data_372D # _entry.id 372D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 372D pdb_0000372d 10.2210/pdb372d/pdb RCSB ADH0106 ? ? WWPDB D_1000178841 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-05-03 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 372D _pdbx_database_status.recvd_initial_deposition_date 1997-12-19 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fernandez, L.G.' 1 ? 'Subirana, J.A.' 2 ? 'Verdaguer, N.' 3 ? 'Pyshnyi, D.' 4 ? 'Campos, L.' 5 ? # _citation.id primary _citation.title 'Structural variability of A-DNA in crystals of the octamer d(pCpCpCpGpCpGpGpG)' _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_volume 15 _citation.page_first 151 _citation.page_last 163 _citation.year 1997 _citation.journal_id_ASTM JBSDD6 _citation.country US _citation.journal_id_ISSN 0739-1102 _citation.journal_id_CSD 0646 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9283988 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fernandez, L.G.' 1 ? primary 'Subirana, J.A.' 2 ? primary 'Verdaguer, N.' 3 ? primary 'Pyshnyi, D.' 4 ? primary 'Campos, L.' 5 ? primary 'Malinina, L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*CP*CP*GP*CP*GP*GP*G)-3') ; 2428.593 1 ? ? ? ? 2 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DC)(DG)(DC)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCCGCGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DG 8 8 8 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 21 21 HOH HOH A . B 2 HOH 2 22 22 HOH HOH A . B 2 HOH 3 23 23 HOH HOH A . B 2 HOH 4 24 24 HOH HOH A . B 2 HOH 5 25 25 HOH HOH A . B 2 HOH 6 26 26 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 X-PLOR refinement 3.1 ? 2 MARXDS 'data reduction' . ? 3 MARSCALE 'data scaling' . ? 4 # _cell.entry_id 372D _cell.length_a 41.770 _cell.length_b 41.770 _cell.length_c 25.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 372D _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 372D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.54 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 NACL ? ? ? 1 4 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-01-01 _diffrn_detector.details 'COLIMATOR 0.4' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAFITO _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-21' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 372D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 733 _reflns.number_all ? _reflns.percent_possible_obs 98.200 _reflns.pdbx_Rmerge_I_obs 0.0810000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.405 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.520 _reflns_shell.d_res_low 2.620 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.3000000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 372D _refine.ls_number_reflns_obs 729 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.600 _refine.ls_percent_reflns_obs 90.480 _refine.ls_R_factor_obs 0.1840000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1810000 _refine.ls_R_factor_R_free 0.2100000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.860 _refine.ls_number_reflns_R_free 68 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method R-FREE _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 165 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 171 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na 1.150 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.15 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.71 _refine_ls_shell.number_reflns_R_work 76 _refine_ls_shell.R_factor_R_work 0.1150000 _refine_ls_shell.percent_reflns_obs 91.01 _refine_ls_shell.R_factor_R_free 0.2620000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.61 _refine_ls_shell.number_reflns_R_free 5 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARAM_NDBX.DNA _pdbx_xplor_file.topol_file TOP_NDBX.DNA _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 372D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 372D _struct.title 'STRUCTURAL VARIABILITY OF A-DNA IN CRYSTALS OF THE OCTAMER D(PCPCPCPGPCPGPGPG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 372D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 372D _struct_ref.pdbx_db_accession 372D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 372D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 372D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 41.7700000000 -1.0000000000 0.0000000000 0.0000000000 41.7700000000 0.0000000000 0.0000000000 -1.0000000000 12.5750000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 1 A DG 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 1 A DG 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 1 A DG 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 3 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 3 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 3 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 4 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 4 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 4 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 5 A DG 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 5 A DG 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 5 A DG 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 6 A DC 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 6 A DC 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 6 A DC 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 8 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 8 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 8 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 372D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 8 8_665 -0.085 -0.176 0.018 8.256 -11.765 1.736 1 A_DC1:DG8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 8_665 0.339 -0.131 0.306 0.379 -9.865 3.561 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DC 3 1_555 A DG 6 8_665 0.539 -0.207 0.020 3.089 -8.879 6.059 3 A_DC3:DG6_A A 3 ? A 6 ? 19 1 1 A DG 4 1_555 A DC 5 8_665 -0.118 -0.401 0.273 -2.614 -11.097 2.310 4 A_DG4:DC5_A A 4 ? A 5 ? 19 1 1 A DC 5 1_555 A DG 4 8_665 0.118 -0.401 0.273 2.614 -11.097 2.310 5 A_DC5:DG4_A A 5 ? A 4 ? 19 1 1 A DG 6 1_555 A DC 3 8_665 -0.539 -0.207 0.020 -3.089 -8.879 6.059 6 A_DG6:DC3_A A 6 ? A 3 ? 19 1 1 A DG 7 1_555 A DC 2 8_665 -0.339 -0.131 0.306 -0.379 -9.865 3.561 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1 1 A DG 8 1_555 A DC 1 8_665 0.085 -0.176 0.018 -8.256 -11.765 1.736 8 A_DG8:DC1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 8 8_665 A DC 2 1_555 A DG 7 8_665 0.290 -1.449 3.521 -2.583 8.417 36.052 -3.435 -0.811 3.089 13.356 4.099 37.076 1 AA_DC1DC2:DG7DG8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 8_665 A DC 3 1_555 A DG 6 8_665 -0.348 -1.668 3.233 -0.860 5.332 29.956 -4.188 0.500 2.908 10.211 1.647 30.428 2 AA_DC2DC3:DG6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DC 3 1_555 A DG 6 8_665 A DG 4 1_555 A DC 5 8_665 -0.299 -1.198 3.268 -2.444 4.669 35.623 -2.589 0.143 3.104 7.581 3.967 35.998 3 AA_DC3DG4:DC5DG6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DG 4 1_555 A DC 5 8_665 A DC 5 1_555 A DG 4 8_665 0.000 -1.119 3.364 0.000 3.120 28.860 -2.926 0.000 3.227 6.236 0.000 29.025 4 AA_DG4DC5:DG4DC5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DC 5 1_555 A DG 4 8_665 A DG 6 1_555 A DC 3 8_665 0.299 -1.198 3.268 2.444 4.669 35.623 -2.589 -0.143 3.104 7.581 -3.967 35.998 5 AA_DC5DG6:DC3DG4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DG 6 1_555 A DC 3 8_665 A DG 7 1_555 A DC 2 8_665 0.348 -1.668 3.233 0.860 5.332 29.956 -4.188 -0.500 2.908 10.211 -1.647 30.428 6 AA_DG6DG7:DC2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A DC 2 8_665 A DG 8 1_555 A DC 1 8_665 -0.290 -1.449 3.521 2.583 8.417 36.052 -3.435 0.811 3.089 13.356 -4.099 37.076 7 AA_DG7DG8:DC1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 372D _atom_sites.fract_transf_matrix[1][1] 0.023941 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023941 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039761 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O OP3 . DC A 1 1 ? 36.437 -0.301 14.005 1.00 27.13 ? 1 DC A OP3 1 ATOM 2 P P . DC A 1 1 ? 36.261 0.423 12.574 1.00 28.57 ? 1 DC A P 1 ATOM 3 O OP1 . DC A 1 1 ? 35.564 1.705 12.847 1.00 31.45 ? 1 DC A OP1 1 ATOM 4 O OP2 . DC A 1 1 ? 37.556 0.429 11.838 1.00 28.53 ? 1 DC A OP2 1 ATOM 5 O "O5'" . DC A 1 1 ? 35.245 -0.483 11.742 1.00 31.56 ? 1 DC A "O5'" 1 ATOM 6 C "C5'" . DC A 1 1 ? 35.570 -1.844 11.394 1.00 25.76 ? 1 DC A "C5'" 1 ATOM 7 C "C4'" . DC A 1 1 ? 34.382 -2.520 10.748 1.00 21.40 ? 1 DC A "C4'" 1 ATOM 8 O "O4'" . DC A 1 1 ? 33.285 -2.594 11.678 1.00 15.26 ? 1 DC A "O4'" 1 ATOM 9 C "C3'" . DC A 1 1 ? 33.818 -1.796 9.538 1.00 21.40 ? 1 DC A "C3'" 1 ATOM 10 O "O3'" . DC A 1 1 ? 34.539 -2.170 8.367 1.00 20.26 ? 1 DC A "O3'" 1 ATOM 11 C "C2'" . DC A 1 1 ? 32.389 -2.291 9.499 1.00 19.98 ? 1 DC A "C2'" 1 ATOM 12 C "C1'" . DC A 1 1 ? 32.058 -2.422 10.982 1.00 20.05 ? 1 DC A "C1'" 1 ATOM 13 N N1 . DC A 1 1 ? 31.380 -1.258 11.565 1.00 18.74 ? 1 DC A N1 1 ATOM 14 C C2 . DC A 1 1 ? 30.008 -1.075 11.320 1.00 19.53 ? 1 DC A C2 1 ATOM 15 O O2 . DC A 1 1 ? 29.388 -1.932 10.669 1.00 19.45 ? 1 DC A O2 1 ATOM 16 N N3 . DC A 1 1 ? 29.393 0.017 11.815 1.00 17.12 ? 1 DC A N3 1 ATOM 17 C C4 . DC A 1 1 ? 30.078 0.884 12.554 1.00 18.56 ? 1 DC A C4 1 ATOM 18 N N4 . DC A 1 1 ? 29.431 1.940 13.016 1.00 24.32 ? 1 DC A N4 1 ATOM 19 C C5 . DC A 1 1 ? 31.463 0.705 12.849 1.00 16.32 ? 1 DC A C5 1 ATOM 20 C C6 . DC A 1 1 ? 32.068 -0.366 12.331 1.00 15.99 ? 1 DC A C6 1 ATOM 21 P P . DC A 1 2 ? 34.836 -1.068 7.248 1.00 21.17 ? 2 DC A P 1 ATOM 22 O OP1 . DC A 1 2 ? 35.712 -1.624 6.191 1.00 25.28 ? 2 DC A OP1 1 ATOM 23 O OP2 . DC A 1 2 ? 35.243 0.168 7.958 1.00 20.86 ? 2 DC A OP2 1 ATOM 24 O "O5'" . DC A 1 2 ? 33.406 -0.868 6.600 1.00 20.70 ? 2 DC A "O5'" 1 ATOM 25 C "C5'" . DC A 1 2 ? 32.813 -1.917 5.858 1.00 17.91 ? 2 DC A "C5'" 1 ATOM 26 C "C4'" . DC A 1 2 ? 31.378 -1.576 5.557 1.00 19.80 ? 2 DC A "C4'" 1 ATOM 27 O "O4'" . DC A 1 2 ? 30.667 -1.413 6.800 1.00 18.29 ? 2 DC A "O4'" 1 ATOM 28 C "C3'" . DC A 1 2 ? 31.167 -0.255 4.849 1.00 21.60 ? 2 DC A "C3'" 1 ATOM 29 O "O3'" . DC A 1 2 ? 31.391 -0.400 3.445 1.00 25.99 ? 2 DC A "O3'" 1 ATOM 30 C "C2'" . DC A 1 2 ? 29.709 -0.005 5.171 1.00 23.21 ? 2 DC A "C2'" 1 ATOM 31 C "C1'" . DC A 1 2 ? 29.625 -0.471 6.620 1.00 16.59 ? 2 DC A "C1'" 1 ATOM 32 N N1 . DC A 1 2 ? 29.809 0.602 7.612 1.00 14.13 ? 2 DC A N1 1 ATOM 33 C C2 . DC A 1 2 ? 28.756 1.477 7.840 1.00 15.89 ? 2 DC A C2 1 ATOM 34 O O2 . DC A 1 2 ? 27.721 1.330 7.198 1.00 21.95 ? 2 DC A O2 1 ATOM 35 N N3 . DC A 1 2 ? 28.887 2.462 8.757 1.00 16.22 ? 2 DC A N3 1 ATOM 36 C C4 . DC A 1 2 ? 30.020 2.583 9.448 1.00 15.38 ? 2 DC A C4 1 ATOM 37 N N4 . DC A 1 2 ? 30.084 3.541 10.377 1.00 14.20 ? 2 DC A N4 1 ATOM 38 C C5 . DC A 1 2 ? 31.129 1.715 9.225 1.00 15.24 ? 2 DC A C5 1 ATOM 39 C C6 . DC A 1 2 ? 30.977 0.743 8.302 1.00 18.46 ? 2 DC A C6 1 ATOM 40 P P . DC A 1 3 ? 31.696 0.894 2.526 1.00 26.41 ? 3 DC A P 1 ATOM 41 O OP1 . DC A 1 3 ? 31.896 0.342 1.168 1.00 28.90 ? 3 DC A OP1 1 ATOM 42 O OP2 . DC A 1 3 ? 32.735 1.785 3.126 1.00 23.01 ? 3 DC A OP2 1 ATOM 43 O "O5'" . DC A 1 3 ? 30.328 1.711 2.499 1.00 25.36 ? 3 DC A "O5'" 1 ATOM 44 C "C5'" . DC A 1 3 ? 29.199 1.239 1.750 1.00 22.98 ? 3 DC A "C5'" 1 ATOM 45 C "C4'" . DC A 1 3 ? 28.022 2.152 1.982 1.00 21.44 ? 3 DC A "C4'" 1 ATOM 46 O "O4'" . DC A 1 3 ? 27.825 2.271 3.404 1.00 22.25 ? 3 DC A "O4'" 1 ATOM 47 C "C3'" . DC A 1 3 ? 28.235 3.584 1.512 1.00 24.00 ? 3 DC A "C3'" 1 ATOM 48 O "O3'" . DC A 1 3 ? 27.757 3.714 0.171 1.00 24.65 ? 3 DC A "O3'" 1 ATOM 49 C "C2'" . DC A 1 3 ? 27.335 4.381 2.435 1.00 22.47 ? 3 DC A "C2'" 1 ATOM 50 C "C1'" . DC A 1 3 ? 27.317 3.564 3.714 1.00 20.27 ? 3 DC A "C1'" 1 ATOM 51 N N1 . DC A 1 3 ? 28.105 4.119 4.817 1.00 15.38 ? 3 DC A N1 1 ATOM 52 C C2 . DC A 1 3 ? 27.547 5.147 5.571 1.00 15.49 ? 3 DC A C2 1 ATOM 53 O O2 . DC A 1 3 ? 26.409 5.558 5.281 1.00 14.00 ? 3 DC A O2 1 ATOM 54 N N3 . DC A 1 3 ? 28.249 5.669 6.597 1.00 12.99 ? 3 DC A N3 1 ATOM 55 C C4 . DC A 1 3 ? 29.456 5.193 6.883 1.00 11.84 ? 3 DC A C4 1 ATOM 56 N N4 . DC A 1 3 ? 30.106 5.729 7.914 1.00 13.62 ? 3 DC A N4 1 ATOM 57 C C5 . DC A 1 3 ? 30.049 4.145 6.128 1.00 11.68 ? 3 DC A C5 1 ATOM 58 C C6 . DC A 1 3 ? 29.346 3.644 5.113 1.00 12.88 ? 3 DC A C6 1 ATOM 59 P P . DG A 1 4 ? 28.105 5.031 -0.666 1.00 22.69 ? 4 DG A P 1 ATOM 60 O OP1 . DG A 1 4 ? 27.597 4.825 -2.027 1.00 24.19 ? 4 DG A OP1 1 ATOM 61 O OP2 . DG A 1 4 ? 29.544 5.324 -0.443 1.00 21.04 ? 4 DG A OP2 1 ATOM 62 O "O5'" . DG A 1 4 ? 27.254 6.181 0.026 1.00 22.52 ? 4 DG A "O5'" 1 ATOM 63 C "C5'" . DG A 1 4 ? 25.865 6.334 -0.255 1.00 20.20 ? 4 DG A "C5'" 1 ATOM 64 C "C4'" . DG A 1 4 ? 25.330 7.556 0.451 1.00 18.55 ? 4 DG A "C4'" 1 ATOM 65 O "O4'" . DG A 1 4 ? 25.450 7.386 1.874 1.00 18.87 ? 4 DG A "O4'" 1 ATOM 66 C "C3'" . DG A 1 4 ? 26.094 8.833 0.176 1.00 17.34 ? 4 DG A "C3'" 1 ATOM 67 O "O3'" . DG A 1 4 ? 25.611 9.422 -1.004 1.00 19.10 ? 4 DG A "O3'" 1 ATOM 68 C "C2'" . DG A 1 4 ? 25.733 9.682 1.375 1.00 18.76 ? 4 DG A "C2'" 1 ATOM 69 C "C1'" . DG A 1 4 ? 25.688 8.647 2.491 1.00 16.29 ? 4 DG A "C1'" 1 ATOM 70 N N9 . DG A 1 4 ? 26.932 8.541 3.241 1.00 12.67 ? 4 DG A N9 1 ATOM 71 C C8 . DG A 1 4 ? 27.940 7.636 3.052 1.00 12.03 ? 4 DG A C8 1 ATOM 72 N N7 . DG A 1 4 ? 28.916 7.776 3.905 1.00 12.73 ? 4 DG A N7 1 ATOM 73 C C5 . DG A 1 4 ? 28.519 8.840 4.699 1.00 9.04 ? 4 DG A C5 1 ATOM 74 C C6 . DG A 1 4 ? 29.157 9.439 5.802 1.00 10.30 ? 4 DG A C6 1 ATOM 75 O O6 . DG A 1 4 ? 30.237 9.145 6.313 1.00 10.97 ? 4 DG A O6 1 ATOM 76 N N1 . DG A 1 4 ? 28.412 10.487 6.316 1.00 8.28 ? 4 DG A N1 1 ATOM 77 C C2 . DG A 1 4 ? 27.208 10.913 5.812 1.00 10.18 ? 4 DG A C2 1 ATOM 78 N N2 . DG A 1 4 ? 26.639 11.959 6.414 1.00 4.01 ? 4 DG A N2 1 ATOM 79 N N3 . DG A 1 4 ? 26.605 10.353 4.781 1.00 9.80 ? 4 DG A N3 1 ATOM 80 C C4 . DG A 1 4 ? 27.308 9.329 4.287 1.00 6.90 ? 4 DG A C4 1 ATOM 81 P P . DC A 1 5 ? 26.608 10.261 -1.913 1.00 24.71 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? 25.850 10.567 -3.168 1.00 25.50 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? 27.909 9.563 -1.971 1.00 24.54 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? 26.854 11.591 -1.087 1.00 22.94 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? 25.825 12.560 -1.021 1.00 24.17 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? 26.027 13.468 0.163 1.00 17.14 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? 26.362 12.681 1.315 1.00 12.53 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? 27.172 14.441 0.087 1.00 12.75 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? 26.828 15.544 -0.726 1.00 18.28 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? 27.279 14.844 1.540 1.00 9.72 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? 27.077 13.507 2.220 1.00 5.36 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? 28.321 12.820 2.551 1.00 5.67 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? 29.004 13.236 3.672 1.00 3.71 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? 28.555 14.199 4.295 1.00 6.34 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? 30.136 12.584 4.050 1.00 4.61 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? 30.577 11.547 3.328 1.00 3.63 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? 31.661 10.901 3.758 1.00 5.25 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? 29.912 11.121 2.142 1.00 2.00 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? 28.796 11.782 1.792 1.00 5.38 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? 27.973 16.576 -1.164 1.00 24.53 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? 27.281 17.644 -1.928 1.00 27.53 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? 29.123 15.830 -1.769 1.00 21.04 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? 28.517 17.215 0.195 1.00 22.60 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? 27.840 18.325 0.820 1.00 17.38 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? 28.644 18.847 1.991 1.00 15.38 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? 28.802 17.812 2.976 1.00 13.88 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? 30.074 19.267 1.688 1.00 16.79 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? 30.140 20.605 1.226 1.00 19.71 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? 30.716 19.188 3.052 1.00 16.87 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? 30.076 17.939 3.601 1.00 8.34 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? 30.863 16.783 3.234 1.00 3.42 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? 30.657 15.945 2.172 1.00 2.39 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? 31.517 14.959 2.132 1.00 8.97 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? 32.339 15.181 3.228 1.00 3.24 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? 33.423 14.436 3.714 1.00 4.40 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? 33.911 13.412 3.242 1.00 5.74 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? 33.948 14.990 4.882 1.00 6.27 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? 33.476 16.130 5.489 1.00 8.25 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? 34.071 16.508 6.642 1.00 8.23 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? 32.475 16.847 5.015 1.00 6.64 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? 31.952 16.311 3.901 1.00 2.00 ? 6 DG A C4 1 ATOM 122 P P . DG A 1 7 ? 31.375 21.061 0.316 1.00 21.95 ? 7 DG A P 1 ATOM 123 O OP1 . DG A 1 7 ? 31.131 22.504 0.070 1.00 23.70 ? 7 DG A OP1 1 ATOM 124 O OP2 . DG A 1 7 ? 31.503 20.132 -0.840 1.00 20.42 ? 7 DG A OP2 1 ATOM 125 O "O5'" . DG A 1 7 ? 32.647 20.872 1.267 1.00 17.79 ? 7 DG A "O5'" 1 ATOM 126 C "C5'" . DG A 1 7 ? 33.081 21.950 2.085 1.00 12.20 ? 7 DG A "C5'" 1 ATOM 127 C "C4'" . DG A 1 7 ? 34.170 21.513 3.033 1.00 11.87 ? 7 DG A "C4'" 1 ATOM 128 O "O4'" . DG A 1 7 ? 33.919 20.187 3.539 1.00 10.69 ? 7 DG A "O4'" 1 ATOM 129 C "C3'" . DG A 1 7 ? 35.569 21.398 2.472 1.00 10.73 ? 7 DG A "C3'" 1 ATOM 130 O "O3'" . DG A 1 7 ? 36.148 22.677 2.310 1.00 15.65 ? 7 DG A "O3'" 1 ATOM 131 C "C2'" . DG A 1 7 ? 36.245 20.628 3.588 1.00 9.98 ? 7 DG A "C2'" 1 ATOM 132 C "C1'" . DG A 1 7 ? 35.174 19.608 3.915 1.00 7.98 ? 7 DG A "C1'" 1 ATOM 133 N N9 . DG A 1 7 ? 35.358 18.402 3.124 1.00 11.29 ? 7 DG A N9 1 ATOM 134 C C8 . DG A 1 7 ? 34.660 18.017 2.002 1.00 10.51 ? 7 DG A C8 1 ATOM 135 N N7 . DG A 1 7 ? 35.045 16.859 1.534 1.00 8.60 ? 7 DG A N7 1 ATOM 136 C C5 . DG A 1 7 ? 36.058 16.467 2.393 1.00 9.06 ? 7 DG A C5 1 ATOM 137 C C6 . DG A 1 7 ? 36.848 15.299 2.399 1.00 10.30 ? 7 DG A C6 1 ATOM 138 O O6 . DG A 1 7 ? 36.812 14.333 1.617 1.00 18.32 ? 7 DG A O6 1 ATOM 139 N N1 . DG A 1 7 ? 37.755 15.306 3.452 1.00 12.25 ? 7 DG A N1 1 ATOM 140 C C2 . DG A 1 7 ? 37.873 16.307 4.385 1.00 13.12 ? 7 DG A C2 1 ATOM 141 N N2 . DG A 1 7 ? 38.780 16.118 5.346 1.00 16.73 ? 7 DG A N2 1 ATOM 142 N N3 . DG A 1 7 ? 37.149 17.410 4.384 1.00 14.41 ? 7 DG A N3 1 ATOM 143 C C4 . DG A 1 7 ? 36.267 17.420 3.371 1.00 11.44 ? 7 DG A C4 1 ATOM 144 P P . DG A 1 8 ? 37.567 22.816 1.585 1.00 19.03 ? 8 DG A P 1 ATOM 145 O OP1 . DG A 1 8 ? 37.996 24.229 1.787 1.00 25.17 ? 8 DG A OP1 1 ATOM 146 O OP2 . DG A 1 8 ? 37.475 22.266 0.202 1.00 18.69 ? 8 DG A OP2 1 ATOM 147 O "O5'" . DG A 1 8 ? 38.518 21.914 2.489 1.00 21.15 ? 8 DG A "O5'" 1 ATOM 148 C "C5'" . DG A 1 8 ? 38.815 22.303 3.842 1.00 20.31 ? 8 DG A "C5'" 1 ATOM 149 C "C4'" . DG A 1 8 ? 40.060 21.595 4.314 1.00 21.23 ? 8 DG A "C4'" 1 ATOM 150 O "O4'" . DG A 1 8 ? 39.771 20.193 4.390 1.00 25.35 ? 8 DG A "O4'" 1 ATOM 151 C "C3'" . DG A 1 8 ? 41.237 21.725 3.352 1.00 24.57 ? 8 DG A "C3'" 1 ATOM 152 O "O3'" . DG A 1 8 ? 42.100 22.766 3.840 1.00 31.29 ? 8 DG A "O3'" 1 ATOM 153 C "C2'" . DG A 1 8 ? 41.961 20.406 3.514 1.00 26.73 ? 8 DG A "C2'" 1 ATOM 154 C "C1'" . DG A 1 8 ? 40.844 19.436 3.840 1.00 23.94 ? 8 DG A "C1'" 1 ATOM 155 N N9 . DG A 1 8 ? 40.319 18.648 2.723 1.00 18.19 ? 8 DG A N9 1 ATOM 156 C C8 . DG A 1 8 ? 39.291 18.977 1.867 1.00 14.36 ? 8 DG A C8 1 ATOM 157 N N7 . DG A 1 8 ? 39.007 18.021 1.023 1.00 13.04 ? 8 DG A N7 1 ATOM 158 C C5 . DG A 1 8 ? 39.910 17.007 1.334 1.00 9.15 ? 8 DG A C5 1 ATOM 159 C C6 . DG A 1 8 ? 40.072 15.714 0.780 1.00 12.07 ? 8 DG A C6 1 ATOM 160 O O6 . DG A 1 8 ? 39.394 15.161 -0.093 1.00 21.57 ? 8 DG A O6 1 ATOM 161 N N1 . DG A 1 8 ? 41.143 15.031 1.357 1.00 9.58 ? 8 DG A N1 1 ATOM 162 C C2 . DG A 1 8 ? 41.941 15.523 2.352 1.00 10.92 ? 8 DG A C2 1 ATOM 163 N N2 . DG A 1 8 ? 42.969 14.751 2.729 1.00 6.06 ? 8 DG A N2 1 ATOM 164 N N3 . DG A 1 8 ? 41.761 16.700 2.922 1.00 12.29 ? 8 DG A N3 1 ATOM 165 C C4 . DG A 1 8 ? 40.741 17.388 2.359 1.00 11.44 ? 8 DG A C4 1 HETATM 166 O O . HOH B 2 . ? 34.214 11.598 1.388 1.00 15.95 ? 21 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 34.391 15.271 -0.815 1.00 33.50 ? 22 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 30.866 6.201 3.160 1.00 21.48 ? 23 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 32.271 7.877 5.675 1.00 12.92 ? 24 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 26.078 5.393 -5.106 1.00 40.42 ? 25 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 25.174 2.653 -2.634 1.00 45.69 ? 26 HOH A O 1 #