62.65 14.271 8.963 36.082 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 39.76 14.602 9.590 34.812 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 44.29 14.119 8.646 33.736 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 29.48 12.842 9.029 33.272 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 28.50 15.015 8.550 32.494 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 38.66 15.135 7.198 32.067 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 24.66 14.377 9.541 31.524 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 19.22 12.921 9.569 31.940 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 15.81 12.322 10.911 31.853 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 17.92 12.865 12.162 31.942 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 20.52 11.993 13.139 31.821 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 17.35 10.768 12.490 31.632 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 12.35 9.439 12.993 31.385 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 15.07 9.001 14.142 31.317 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 15.07 8.496 11.992 31.217 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 10.04 8.860 10.664 31.258 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 14.62 7.864 9.781 31.104 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 11.56 10.074 10.153 31.456 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 13.01 10.978 11.135 31.629 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 19.56 14.475 12.479 28.883 A BR CBR 2 HETATM A BR CBR 1 2 1.00 1 BR 29.71 15.812 6.601 30.744 A P CBR 2 HETATM A P CBR 1 2 1.00 1 P 26.34 16.215 5.221 31.165 A OP1 CBR 2 HETATM A OP1 CBR 1 2 1.00 1 O 25.16 16.978 7.391 30.271 A OP2 CBR 2 HETATM A OP2 CBR 1 2 1.00 1 O 26.05 14.613 6.551 29.693 A O5' CBR 2 HETATM A O5' CBR 1 2 1.00 1 O 17.68 11.674 9.529 28.208 A N1 CBR 2 HETATM A N1 CBR 1 2 1.00 1 N 17.89 12.818 10.242 28.435 A C6 CBR 2 HETATM A C6 CBR 1 2 1.00 1 C 15.22 10.449 10.183 28.058 A C2 CBR 2 HETATM A C2 CBR 1 2 1.00 1 C 13.69 9.419 9.527 27.867 A O2 CBR 2 HETATM A O2 CBR 1 2 1.00 1 O 12.44 10.426 11.547 28.156 A N3 CBR 2 HETATM A N3 CBR 1 2 1.00 1 N 10.25 11.589 12.233 28.395 A C4 CBR 2 HETATM A C4 CBR 1 2 1.00 1 C 12.22 11.433 13.565 28.435 A N4 CBR 2 HETATM A N4 CBR 1 2 1.00 1 N 15.23 12.852 11.584 28.540 A C5 CBR 2 HETATM A C5 CBR 1 2 1.00 1 C 38.78 12.593 7.493 27.114 A C2' CBR 2 HETATM A C2' CBR 1 2 1.00 1 C 28.18 13.445 5.780 30.098 A C5' CBR 2 HETATM A C5' CBR 1 2 1.00 1 C 26.15 12.362 6.123 29.101 A C4' CBR 2 HETATM A C4' CBR 1 2 1.00 1 C 19.77 11.831 7.398 29.344 A O4' CBR 2 HETATM A O4' CBR 1 2 1.00 1 O 25.79 11.585 8.066 28.090 A C1' CBR 2 HETATM A C1' CBR 1 2 1.00 1 C 25.74 12.871 6.098 27.657 A C3' CBR 2 HETATM A C3' CBR 1 2 1.00 1 C 25.19 12.253 5.027 26.945 A O3' CBR 2 HETATM A O3' CBR 1 2 1.00 1 O 30.02 12.596 4.681 25.408 A P DG 3 ATOM A P DG 1 3 1.00 1 P 35.71 12.113 3.290 25.279 A OP1 DG 3 ATOM A OP1 DG 1 3 1.00 1 O 27.51 14.064 4.836 25.165 A OP2 DG 3 ATOM A OP2 DG 1 3 1.00 1 O 21.25 11.796 5.761 24.561 A O5' DG 3 ATOM A O5' DG 1 3 1.00 1 O 21.24 10.357 5.865 24.632 A C5' DG 3 ATOM A C5' DG 1 3 1.00 1 C 29.95 9.995 7.189 24.011 A C4' DG 3 ATOM A C4' DG 1 3 1.00 1 C 18.46 10.701 8.226 24.667 A O4' DG 3 ATOM A O4' DG 1 3 1.00 1 O 25.40 10.367 7.340 22.531 A C3' DG 3 ATOM A C3' DG 1 3 1.00 1 C 36.38 9.475 8.237 21.872 A O3' DG 3 ATOM A O3' DG 1 3 1.00 1 O 21.40 11.761 7.996 22.599 A C2' DG 3 ATOM A C2' DG 1 3 1.00 1 C 13.64 11.360 9.025 23.666 A C1' DG 3 ATOM A C1' DG 1 3 1.00 1 C 15.90 12.541 9.770 24.082 A N9 DG 3 ATOM A N9 DG 1 3 1.00 1 N 13.73 13.829 9.306 24.215 A C8 DG 3 ATOM A C8 DG 1 3 1.00 1 C 16.35 14.667 10.234 24.611 A N7 DG 3 ATOM A N7 DG 1 3 1.00 1 N 14.34 13.867 11.362 24.755 A C5 DG 3 ATOM A C5 DG 1 3 1.00 1 C 16.96 14.206 12.700 25.154 A C6 DG 3 ATOM A C6 DG 1 3 1.00 1 C 16.03 15.337 13.050 25.456 A O6 DG 3 ATOM A O6 DG 1 3 1.00 1 O 14.85 13.139 13.572 25.170 A N1 DG 3 ATOM A N1 DG 1 3 1.00 1 N 8.38 11.854 13.170 24.851 A C2 DG 3 ATOM A C2 DG 1 3 1.00 1 C 10.59 10.906 14.117 24.904 A N2 DG 3 ATOM A N2 DG 1 3 1.00 1 N 10.13 11.498 11.934 24.498 A N3 DG 3 ATOM A N3 DG 1 3 1.00 1 N 10.46 12.559 11.101 24.434 A C4 DG 3 ATOM A C4 DG 1 3 1.00 1 C 32.63 9.016 7.978 20.352 A P DA 4 ATOM A P DA 1 4 1.00 1 P 35.35 7.923 6.974 20.514 A OP1 DA 4 ATOM A OP1 DA 1 4 1.00 1 O 33.84 10.164 7.466 19.550 A OP2 DA 4 ATOM A OP2 DA 1 4 1.00 1 O 33.33 8.487 9.398 19.872 A O5' DA 4 ATOM A O5' DA 1 4 1.00 1 O 34.98 7.341 9.992 20.540 A C5' DA 4 ATOM A C5' DA 1 4 1.00 1 C 28.09 7.706 11.451 20.750 A C4' DA 4 ATOM A C4' DA 1 4 1.00 1 C 24.66 8.821 11.533 21.613 A O4' DA 4 ATOM A O4' DA 1 4 1.00 1 O 34.84 8.160 12.162 19.480 A C3' DA 4 ATOM A C3' DA 1 4 1.00 1 C 43.56 7.075 12.755 18.764 A O3' DA 4 ATOM A O3' DA 1 4 1.00 1 O 28.48 9.151 13.216 19.947 A C2' DA 4 ATOM A C2' DA 1 4 1.00 1 C 31.93 9.578 12.721 21.310 A C1' DA 4 ATOM A C1' DA 1 4 1.00 1 C 12.76 11.010 12.377 21.265 A N9 DA 4 ATOM A N9 DA 1 4 1.00 1 N 17.42 11.543 11.145 20.994 A C8 DA 4 ATOM A C8 DA 1 4 1.00 1 C 13.32 12.853 11.127 21.022 A N7 DA 4 ATOM A N7 DA 1 4 1.00 1 N 15.77 13.181 12.446 21.325 A C5 DA 4 ATOM A C5 DA 1 4 1.00 1 C 11.50 14.433 13.096 21.499 A C6 DA 4 ATOM A C6 DA 1 4 1.00 1 C 12.30 15.618 12.486 21.396 A N6 DA 4 ATOM A N6 DA 1 4 1.00 1 N 14.83 14.385 14.418 21.803 A N1 DA 4 ATOM A N1 DA 1 4 1.00 1 N 10.35 13.178 15.086 21.911 A C2 DA 4 ATOM A C2 DA 1 4 1.00 1 C 15.83 11.978 14.542 21.754 A N3 DA 4 ATOM A N3 DA 1 4 1.00 1 N 9.41 12.064 13.225 21.477 A C4 DA 4 ATOM A C4 DA 1 4 1.00 1 C 29.12 6.724 12.253 17.274 A P DA 5 ATOM A P DA 1 5 1.00 1 P 31.15 5.318 12.725 17.143 A OP1 DA 5 ATOM A OP1 DA 1 5 1.00 1 O 33.21 6.850 10.770 17.152 A OP2 DA 5 ATOM A OP2 DA 1 5 1.00 1 O 34.55 7.794 13.012 16.361 A O5' DA 5 ATOM A O5' DA 1 5 1.00 1 O 30.30 7.594 14.420 16.087 A C5' DA 5 ATOM A C5' DA 1 5 1.00 1 C 37.52 8.707 14.922 15.209 A C4' DA 5 ATOM A C4' DA 1 5 1.00 1 C 31.38 9.935 14.263 15.446 A O4' DA 5 ATOM A O4' DA 1 5 1.00 1 O 31.22 8.461 14.846 13.702 A C3' DA 5 ATOM A C3' DA 1 5 1.00 1 C 37.28 8.470 16.143 13.102 A O3' DA 5 ATOM A O3' DA 1 5 1.00 1 O 30.70 9.604 13.977 13.166 A C2' DA 5 ATOM A C2' DA 1 5 1.00 1 C 35.84 10.682 14.282 14.199 A C1' DA 5 ATOM A C1' DA 1 5 1.00 1 C 20.33 11.728 13.253 14.182 A N9 DA 5 ATOM A N9 DA 1 5 1.00 1 N 19.32 11.572 11.901 13.988 A C8 DA 5 ATOM A C8 DA 1 5 1.00 1 C 15.73 12.698 11.228 14.025 A N7 DA 5 ATOM A N7 DA 1 5 1.00 1 N 16.96 13.655 12.213 14.260 A C5 DA 5 ATOM A C5 DA 1 5 1.00 1 C 18.02 15.065 12.148 14.405 A C6 DA 5 ATOM A C6 DA 1 5 1.00 1 C 19.56 15.795 11.024 14.356 A N6 DA 5 ATOM A N6 DA 1 5 1.00 1 N 19.61 15.718 13.319 14.639 A N1 DA 5 ATOM A N1 DA 1 5 1.00 1 N 21.30 15.007 14.501 14.717 A C2 DA 5 ATOM A C2 DA 1 5 1.00 1 C 19.94 13.693 14.636 14.579 A N3 DA 5 ATOM A N3 DA 1 5 1.00 1 N 20.01 13.076 13.458 14.360 A C4 DA 5 ATOM A C4 DA 1 5 1.00 1 C 31.06 7.371 16.665 12.056 A P DA 6 ATOM A P DA 1 6 1.00 1 P 37.07 6.065 16.389 12.696 A OP1 DA 6 ATOM A OP1 DA 1 6 1.00 1 O 47.48 7.511 15.934 10.749 A OP2 DA 6 ATOM A OP2 DA 1 6 1.00 1 O 33.14 7.741 18.196 11.870 A O5' DA 6 ATOM A O5' DA 1 6 1.00 1 O 38.03 7.750 19.142 12.962 A C5' DA 6 ATOM A C5' DA 1 6 1.00 1 C 31.24 7.748 20.501 12.295 A C4' DA 6 ATOM A C4' DA 1 6 1.00 1 C 38.30 8.941 20.742 11.579 A O4' DA 6 ATOM A O4' DA 1 6 1.00 1 O 29.16 6.642 20.668 11.248 A C3' DA 6 ATOM A C3' DA 1 6 1.00 1 C 31.11 6.205 22.025 11.169 A O3' DA 6 ATOM A O3' DA 1 6 1.00 1 O 21.62 7.330 20.195 9.954 A C2' DA 6 ATOM A C2' DA 1 6 1.00 1 C 20.12 8.667 20.868 10.149 A C1' DA 6 ATOM A C1' DA 1 6 1.00 1 C 15.61 9.740 20.138 9.453 A N9 DA 6 ATOM A N9 DA 1 6 1.00 1 N 18.18 9.816 18.861 8.994 A C8 DA 6 ATOM A C8 DA 1 6 1.00 1 C 15.80 10.970 18.580 8.424 A N7 DA 6 ATOM A N7 DA 1 6 1.00 1 N 12.42 11.673 19.774 8.496 A C5 DA 6 ATOM A C5 DA 1 6 1.00 1 C 18.17 12.982 20.166 8.106 A C6 DA 6 ATOM A C6 DA 1 6 1.00 1 C 17.38 13.863 19.399 7.448 A N6 DA 6 ATOM A N6 DA 1 6 1.00 1 N 15.62 13.340 21.462 8.349 A N1 DA 6 ATOM A N1 DA 1 6 1.00 1 N 16.39 12.470 22.336 8.977 A C2 DA 6 ATOM A C2 DA 1 6 1.00 1 C 17.10 11.242 22.027 9.384 A N3 DA 6 ATOM A N3 DA 1 6 1.00 1 N 13.37 10.931 20.741 9.135 A C4 DA 6 ATOM A C4 DA 1 6 1.00 1 C 34.99 4.956 22.445 10.239 A P DG 7 ATOM A P DG 1 7 1.00 1 P 32.06 4.270 23.485 11.047 A OP1 DG 7 ATOM A OP1 DG 1 7 1.00 1 O 26.70 4.078 21.277 9.951 A OP2 DG 7 ATOM A OP2 DG 1 7 1.00 1 O 35.33 5.698 22.989 8.931 A O5' DG 7 ATOM A O5' DG 1 7 1.00 1 O 24.57 6.646 24.063 9.109 A C5' DG 7 ATOM A C5' DG 1 7 1.00 1 C 33.01 7.430 24.209 7.829 A C4' DG 7 ATOM A C4' DG 1 7 1.00 1 C 30.85 8.160 23.027 7.591 A O4' DG 7 ATOM A O4' DG 1 7 1.00 1 O 39.31 6.622 24.483 6.567 A C3' DG 7 ATOM A C3' DG 1 7 1.00 1 C 37.51 7.187 25.563 5.809 A O3' DG 7 ATOM A O3' DG 1 7 1.00 1 O 32.91 6.664 23.166 5.782 A C2' DG 7 ATOM A C2' DG 1 7 1.00 1 C 31.03 8.038 22.680 6.191 A C1' DG 7 ATOM A C1' DG 1 7 1.00 1 C 17.09 8.221 21.240 5.996 A N9 DG 7 ATOM A N9 DG 1 7 1.00 1 N 15.25 7.384 20.170 6.051 A C8 DG 7 ATOM A C8 DG 1 7 1.00 1 C 17.34 7.955 19.011 5.825 A N7 DG 7 ATOM A N7 DG 1 7 1.00 1 N 15.57 9.276 19.365 5.577 A C5 DG 7 ATOM A C5 DG 1 7 1.00 1 C 14.22 10.408 18.561 5.212 A C6 DG 7 ATOM A C6 DG 1 7 1.00 1 C 17.60 10.426 17.349 5.084 A O6 DG 7 ATOM A O6 DG 1 7 1.00 1 O 14.10 11.549 19.297 5.040 A N1 DG 7 ATOM A N1 DG 1 7 1.00 1 N 13.00 11.593 20.663 5.163 A C2 DG 7 ATOM A C2 DG 1 7 1.00 1 C 18.10 12.793 21.212 4.962 A N2 DG 7 ATOM A N2 DG 1 7 1.00 1 N 17.80 10.566 21.452 5.488 A N3 DG 7 ATOM A N3 DG 1 7 1.00 1 N 18.71 9.456 20.719 5.662 A C4 DG 7 ATOM A C4 DG 1 7 1.00 1 C 31.31 6.224 26.515 4.927 A P DC 8 ATOM A P DC 1 8 1.00 1 P 38.78 5.585 27.380 5.949 A OP1 DC 8 ATOM A OP1 DC 1 8 1.00 1 O 29.79 5.228 25.678 4.186 A OP2 DC 8 ATOM A OP2 DC 1 8 1.00 1 O 39.66 7.245 27.259 3.961 A O5' DC 8 ATOM A O5' DC 1 8 1.00 1 O 44.41 7.683 26.570 2.761 A C5' DC 8 ATOM A C5' DC 1 8 1.00 1 C 44.74 9.197 26.531 2.809 A C4' DC 8 ATOM A C4' DC 1 8 1.00 1 C 46.44 9.622 25.311 3.381 A O4' DC 8 ATOM A O4' DC 1 8 1.00 1 O 46.39 9.851 26.594 1.431 A C3' DC 8 ATOM A C3' DC 1 8 1.00 1 C 40.23 11.078 27.330 1.407 A O3' DC 8 ATOM A O3' DC 1 8 1.00 1 O 49.75 10.032 25.126 1.044 A C2' DC 8 ATOM A C2' DC 1 8 1.00 1 C 29.83 10.258 24.477 2.403 A C1' DC 8 ATOM A C1' DC 1 8 1.00 1 C 20.94 9.736 23.100 2.358 A N1 DC 8 ATOM A N1 DC 1 8 1.00 1 N 15.63 10.688 22.120 2.087 A C2 DC 8 ATOM A C2 DC 1 8 1.00 1 C 14.41 11.853 22.448 1.904 A O2 DC 8 ATOM A O2 DC 1 8 1.00 1 O 19.37 10.270 20.823 2.036 A N3 DC 8 ATOM A N3 DC 1 8 1.00 1 N 16.80 8.972 20.479 2.230 A C4 DC 8 ATOM A C4 DC 1 8 1.00 1 C 13.88 8.624 19.194 2.164 A N4 DC 8 ATOM A N4 DC 1 8 1.00 1 N 15.56 8.009 21.490 2.503 A C5 DC 8 ATOM A C5 DC 1 8 1.00 1 C 17.91 8.417 22.764 2.380 A C6 DC 8 ATOM A C6 DC 1 8 1.00 1 C 58.00 11.138 28.815 0.780 A P DT 9 ATOM A P DT 1 9 1.00 1 P 54.66 12.393 28.799 -0.016 A OP1 DT 9 ATOM A OP1 DT 1 9 1.00 1 O 58.17 11.175 29.849 1.865 A OP2 DT 9 ATOM A OP2 DT 1 9 1.00 1 O 68.73 9.803 28.918 -0.079 A O5' DT 9 ATOM A O5' DT 1 9 1.00 1 O 69.85 9.316 30.213 -0.515 A C5' DT 9 ATOM A C5' DT 1 9 1.00 1 C 73.54 8.378 30.712 0.563 A C4' DT 9 ATOM A C4' DT 1 9 1.00 1 C 74.12 7.272 31.363 -0.022 A O4' DT 9 ATOM A O4' DT 1 9 1.00 1 O 68.66 7.801 29.635 1.472 A C3' DT 9 ATOM A C3' DT 1 9 1.00 1 C 68.05 7.761 30.027 2.848 A O3' DT 9 ATOM A O3' DT 1 9 1.00 1 O 78.99 6.408 29.360 0.901 A C2' DT 9 ATOM A C2' DT 1 9 1.00 1 C 79.50 6.037 30.726 0.354 A C1' DT 9 ATOM A C1' DT 1 9 1.00 1 C 78.10 5.118 30.589 -0.793 A N1 DT 9 ATOM A N1 DT 1 9 1.00 1 N 79.01 5.581 29.973 -1.943 A C2 DT 9 ATOM A C2 DT 1 9 1.00 1 C 73.28 6.729 29.544 -2.027 A O2 DT 9 ATOM A O2 DT 1 9 1.00 1 O 67.48 4.713 29.857 -2.995 A N3 DT 9 ATOM A N3 DT 1 9 1.00 1 N 72.96 3.433 30.321 -2.936 A C4 DT 9 ATOM A C4 DT 1 9 1.00 1 C 77.03 2.637 30.176 -3.999 A O4 DT 9 ATOM A O4 DT 1 9 1.00 1 O 61.07 2.971 30.955 -1.753 A C5 DT 9 ATOM A C5 DT 1 9 1.00 1 C 65.63 1.563 31.486 -1.632 A C7 DT 9 ATOM A C7 DT 1 9 1.00 1 C 80.29 3.834 31.050 -0.732 A C6 DT 9 ATOM A C6 DT 1 9 1.00 1 C 13.07 18.780 10.843 25.743 A CO NCO 10 HETATM B CO NCO 2 0.33 1 CO 11.41 17.791 9.579 24.611 A N1 NCO 10 HETATM B N1 NCO 2 1.00 1 N 12.18 19.394 9.354 26.846 A N2 NCO 10 HETATM B N2 NCO 2 1.00 1 N 22.96 15.657 23.129 7.112 A O HOH 11 HETATM C O HOH 3 1.00 1 O 23.66 6.323 17.992 2.901 A O HOH 12 HETATM C O HOH 3 1.00 1 O 20.91 17.291 14.302 21.017 A O HOH 13 HETATM C O HOH 3 0.33 1 O 5.36 22.030 9.770 27.571 A O HOH 14 HETATM C O HOH 3 1.00 1 O 42.30 13.114 16.207 26.224 A O HOH 15 HETATM C O HOH 3 1.00 1 O 30.98 9.749 6.611 31.190 A O HOH 16 HETATM C O HOH 3 1.00 1 O 34.81 16.670 15.910 23.080 A O HOH 17 HETATM C O HOH 3 1.00 1 O 42.61 12.326 18.268 24.518 A O HOH 18 HETATM C O HOH 3 1.00 1 O 25.49 15.729 6.388 25.474 A O HOH 19 HETATM C O HOH 3 1.00 1 O 42.82 14.983 9.218 21.033 A O HOH 20 HETATM C O HOH 3 1.00 1 O 43.61 14.151 23.962 1.621 A O HOH 21 HETATM C O HOH 3 1.00 1 O 57.42 6.241 5.516 22.360 A O HOH 22 HETATM C O HOH 3 1.00 1 O 53.16 16.900 11.071 29.632 A O HOH 23 HETATM C O HOH 3 1.00 1 O 27.14 7.091 16.270 5.269 A O HOH 24 HETATM C O HOH 3 1.00 1 O 56.54 10.762 9.492 17.510 A O HOH 25 HETATM C O HOH 3 1.00 1 O 35.03 10.832 24.673 6.091 A O HOH 26 HETATM C O HOH 3 1.00 1 O 19.91 18.180 14.850 14.493 A O HOH 27 HETATM C O HOH 3 1.00 1 O 28.71 6.561 13.221 10.142 A O HOH 28 HETATM C O HOH 3 1.00 1 O 0.026624 0.015370 0.000000 0.000000 0.030742 0.000000 0.000000 0.000000 0.015293 0.00000 0.00000 0.00000 Cruse, W.B.T. Shepard, W. Prange, T. delalFortelle, E. Fourme, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 37.560 37.560 65.390 C9 H13 Br N3 O7 P 386.093 n 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Co H18 N6 3 161.116 COBALT HEXAMMINE(III) non-polymer N 1 N BR N 2 N P N 3 N O N 4 N O N 5 N O N 6 N N N 7 N C N 8 N C N 9 N O N 10 N N N 11 N C N 12 N N N 13 N C N 14 N C N 15 N C N 16 R C N 17 N O N 18 R C N 19 S C N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C Y 51 N C N 52 N N Y 53 N N Y 54 N C Y 55 N N Y 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C N 83 N N N 84 N C N 85 N O N 86 N N N 87 N C N 88 N N N 89 N C N 90 N C N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N O N 106 N P N 107 N O N 108 N O N 109 N O N 110 N C N 111 R C N 112 N O N 113 S C N 114 N O N 115 N C N 116 R C Y 117 N N Y 118 N C Y 119 N N Y 120 N C N 121 N C N 122 N O N 123 N N N 124 N C N 125 N N N 126 N N Y 127 N C N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N P N 144 N O N 145 N O N 146 N O N 147 N C N 148 R C N 149 N O N 150 S C N 151 N O N 152 N C N 153 R C N 154 N N N 155 N C N 156 N O N 157 N N N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N O N 179 N H N 180 N H N 181 N CO N 182 N N N 183 N N N 184 N N N 185 N N N 186 N N N 187 N N N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N doub N 14 N sing N 15 N doub N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N doub N 68 N sing N 69 N sing Y 70 N sing Y 71 N doub N 72 N sing Y 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing Y 132 N sing Y 133 N sing Y 134 N doub N 135 N sing Y 136 N sing N 137 N sing Y 138 N doub N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing UK Structure STRUE6 2005 0969-2126 6 849 861 10.1016/S0969-2126(98)00087-2 9687367 A zipper-like duplex in DNA: the crystal structure of d(GCGAAAGCT) at 2.1 A resolution. 1998 US Science SCIEAS 0038 0036-8075 273 1696 1699 RNA Tertiary Structure Mediation by Adenosine Platforms 1997 UK Structure STRUE6 2005 0969-2126 5 713 721 Solution Structure of a Metal-binding Site in the Major Groove of RNA Complexed with Cobalt(III) Hexammine 1997 UK Nucleic Acids Res. NARHAD 0389 0305-1048 17 2223 2231 Extraordinary Stable Structure of Short Single-Stranded DNA Fragments Containing a Specific Base Sequence: d(GCGAAAGC) 1989 US Biochemistry BICHAW 0033 0006-2960 24 237 240 Structural Basis for Stabilisation of Z-DNA by Cobalt Haxaammine and Magnesium Cations 1985 10.2210/pdb376d/pdb pdb_0000376d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 276.00 1 DOUBLE MONO + MULTILAYER FOCUS IMAGE PLATE 1996-09-01 MARRESEARCH SI(III) MAD M x-ray 1 1.0 DW21B LURE SYNCHROTRON LURE BEAMLINE DW21B 2843.733 DNA (5'-D(*GP*(CBR)P*GP*AP*AP*AP*GP*CP*T)-3') 1 man polymer 161.116 COBALT HEXAMMINE(III) 1 syn non-polymer 18.015 water 18 nat water no yes (DG)(CBR)(DG)(DA)(DA)(DA)(DG)(DC)(DT) GCGAAAGCT A polydeoxyribonucleotide n n n n n n n n n 3 2.30 36.0000 WATER 1 CACODYLATE 1 [CO(NH3)6]3+ 1 MPD 1 -1.257 1 19 A 1 A 8 1.074 A_DG1:DC8_A 1 6.292 -0.647 -0.222 -0.153 9.376 1 19 A 2 A 7 -1.394 A_CBR2:DG7_A 2 8.175 0.219 -0.208 -0.072 25.035 9 11 A 3 A 6 9.917 A_DG3:DA6_A 3 -14.740 6.327 1.417 -4.151 -1.257 1 19 A 1 A 8 1.074 A_DG1:DC8_A 4 6.292 -0.647 -0.222 -0.153 9.376 1 19 A 2 A 7 -1.394 A_CBR2:DG7_A 5 8.175 0.219 -0.208 -0.072 25.035 9 11 A 3 A 6 9.917 A_DG3:DA6_A 6 -14.740 6.327 1.417 -4.151 3.164 31.068 A A 1 2 1.767 A A 8 7 3.177 0.946 0.234 0.042 AA_DG1CBR2:DG7DC8_AA 1 -1.360 2.540 31.025 -0.097 -0.690 3.403 52.230 A A 2 3 9.837 A A 7 6 3.201 8.626 0.476 1.572 AA_CBR2DG3:DA6DG7_AA 2 -0.143 0.163 51.562 1.206 -0.550 3.164 31.068 A A 1 2 1.767 A A 8 7 3.177 0.946 0.234 0.042 AA_DG1CBR2:DG7DC8_AA 3 -1.360 2.540 31.025 -0.097 -0.690 3.403 52.230 A A 2 3 9.837 A A 7 6 3.201 8.626 0.476 1.572 AA_CBR2DG3:DA6DG7_AA 4 -0.143 0.163 51.562 1.206 -0.550 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-10-26 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-21 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NDB Y NDB 1998-01-22 REL NCO COBALT HEXAMMINE(III) HOH water MANUALLY BUILT IN THE EXPERIMENTAL DENSITY other NCO 10 2 NCO NCO 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A G 1 n 1 DG 1 A BRO 2 n 2 CBR 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A G 7 n 7 DG 7 A C 8 n 8 DC 8 A T 9 n 9 DT 9 A author_defined_assembly 2 dimeric A CBR 2 A CBR 2 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_665 -y+1,-x+1,-z+1/2 crystal symmetry operation 18.7800000000 32.5279141661 32.6950000000 1 A NCO 10 B NCO 1 A N3 NCO 10 B N3 NCO 1 1 N 1 A N4 NCO 10 B N4 NCO 1 1 N 1 A N5 NCO 10 B N5 NCO 1 1 N 1 A N6 NCO 10 B N6 NCO 1 1 N 1 3.68 0.30 108.30 111.98 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 -4.23 0.60 125.10 120.87 A A A C6 N1 C2 DG DG DG 1 1 1 N 1 4.06 0.60 123.90 127.96 A A A N1 C2 N3 DG DG DG 1 1 1 N 1 2.60 0.40 105.40 108.00 A A A N9 C4 C5 DG DG DG 1 1 1 N 1 -4.73 0.60 119.90 115.17 A A A N1 C6 O6 DG DG DG 1 1 1 N 1 9.92 1.20 119.70 129.62 A A A C3' O3' P DG DG CBR 1 1 2 Y 1 -7.83 0.80 102.40 94.57 A A A C3' C2' C1' DG DG DG 3 3 3 N 1 8.83 0.30 108.30 117.13 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -4.97 0.60 128.60 123.63 A A A C5 C6 O6 DG DG DG 3 3 3 N 1 -3.73 0.50 129.30 125.57 A A A N1 C2 N3 DA DA DA 4 4 4 N 1 3.23 0.30 108.30 111.53 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -3.12 0.50 129.30 126.18 A A A N1 C2 N3 DA DA DA 5 5 5 N 1 -4.37 0.50 129.30 124.93 A A A N1 C2 N3 DA DA DA 6 6 6 N 1 2.43 0.30 108.30 110.73 A A A O4' C1' N9 DG DG DG 7 7 7 N 1 5.73 0.30 108.30 114.03 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 3.55 0.30 108.30 111.85 A A A O4' C1' N1 DT DT DT 9 9 9 N 1 -4.96 0.60 127.20 122.24 A A A C2 N3 C4 DT DT DT 9 9 9 N 1 4.39 0.60 115.20 119.59 A A A N3 C4 C5 DT DT DT 9 9 9 N 1 A A C4 O4 DT DT 9 9 0.108 0.009 1.228 1.336 N 0.241 0.189 0.189 2.100 15.000 183 1832 10.000 95.000 1 MAD AT BROMINE EDGE MANUALLY BUILT IN THE EXPERIMENTAL DENSITY 0.15 15.0 2.100 15.000 18 206 4 184 0 0.012 0.023 2.30 2.100 15.000 376D 1832 3.000 0.053 1 11.3000 95.000 0.148 2.100 4.200 61.00 model building MADLSQ + CCP4 PACKAGE refinement X-PLOR data reduction MOSFLM data scaling CCP4 (SCALA) phasing MADLSQ phasing CCP4 A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT) 1 N N 2 N N 3 N N covale 1.602 both A DG 1 A O3' DG 1 1_555 A CBR 2 A P CBR 2 1_555 covale 1.612 both A CBR 2 A O3' CBR 2 1_555 A DG 3 A P DG 3 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 A DC 8 A N3 DC 8 8_665 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 A DC 8 A O2 DC 8 8_665 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 A DC 8 A N4 DC 8 8_665 hydrog WATSON-CRICK A CBR 2 A N3 CBR 2 1_555 A DG 7 A N1 DG 7 8_665 hydrog WATSON-CRICK A CBR 2 A N4 CBR 2 1_555 A DG 7 A O6 DG 7 8_665 hydrog WATSON-CRICK A CBR 2 A O2 CBR 2 1_555 A DG 7 A N2 DG 7 8_665 hydrog TYPE_11_PAIR A DG 3 A N2 DG 3 1_555 A DA 6 A N7 DA 6 8_665 hydrog TYPE_11_PAIR A DG 3 A N3 DG 3 1_555 A DA 6 A N6 DA 6 8_665 hydrog TYPE_11_PAIR A DA 6 A N6 DA 6 1_555 A DG 3 A N3 DG 3 8_665 hydrog TYPE_11_PAIR A DA 6 A N7 DA 6 1_555 A DG 3 A N2 DG 3 8_665 hydrog WATSON-CRICK A DG 7 A N1 DG 7 1_555 A CBR 2 A N3 CBR 2 8_665 hydrog WATSON-CRICK A DG 7 A N2 DG 7 1_555 A CBR 2 A O2 CBR 2 8_665 hydrog WATSON-CRICK A DG 7 A O6 DG 7 1_555 A CBR 2 A N4 CBR 2 8_665 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 A DG 1 A N1 DG 1 8_665 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 A DG 1 A O6 DG 1 8_665 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 A DG 1 A N2 DG 1 8_665 DNA RIGHT HANDED DNA, DOUBLE HELIX, OVERHANGING BASE, MODIFIED, MISMATCHED, DNA 376D PDB 1 376D 1 9 376D 1 9 376D A 1 1 9 BINDING SITE FOR RESIDUE NCO A 10 A NCO 10 Software 5 A CBR 2 A CBR 2 5 2_655 A DG 3 A DG 3 5 1_555 A DG 3 A DG 3 5 2_655 A HOH 14 C HOH 5 1_555 A HOH 23 C HOH 5 2_655 182 hexagonal P 63 2 2