HEADER DNA 29-APR-98 395D TITLE CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS D(GTACGCGTAC) AND TITLE 2 D(GGCCGCGGCC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*AP*CP*GP*CP*GP*TP*AP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS A-DNA, DOUBLE HELIX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.BAN,M.SUNDARALINGAM REVDAT 4 21-FEB-24 395D 1 REMARK REVDAT 3 16-NOV-11 395D 1 VERSN HETATM REVDAT 2 24-FEB-09 395D 1 VERSN REVDAT 1 01-MAY-98 395D 0 JRNL AUTH C.BAN,B.RAMAKRISHNAN,M.SUNDARALINGAM JRNL TITL CRYSTAL STRUCTURES OF TWO ISOMORPHOUS A-DNA DECAMERS JRNL TITL 2 D(GTACGCGTAC) AND D(GGCCGCGGCC) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.2 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 202 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.027 REMARK 3 BOND ANGLES (DEGREES) : 3.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM11.DNA REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 395D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000178859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.90000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.80000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.85000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.95000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.90000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.80000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.75000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.85000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 12.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.85000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 106 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 122 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 113 O HOH A 115 1.99 REMARK 500 O HOH A 126 O HOH A 138 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 1 C5 DG A 1 N7 0.064 REMARK 500 DA A 3 C4 DA A 3 C5 -0.077 REMARK 500 DA A 3 C6 DA A 3 N1 -0.051 REMARK 500 DA A 3 C5 DA A 3 N7 0.045 REMARK 500 DC A 6 C4' DC A 6 C3' -0.101 REMARK 500 DC A 6 C3' DC A 6 C2' -0.048 REMARK 500 DG A 7 N1 DG A 7 C2 0.057 REMARK 500 DG A 7 C4 DG A 7 C5 0.052 REMARK 500 DT A 8 C4' DT A 8 C3' -0.077 REMARK 500 DA A 9 N9 DA A 9 C4 -0.042 REMARK 500 DA A 9 C6 DA A 9 N6 -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG A 1 C5 - N7 - C8 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG A 1 N7 - C8 - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT A 2 C4' - C3' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 DT A 2 N1 - C2 - N3 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT A 2 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA A 3 C4' - C3' - C2' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA A 3 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA A 3 C5 - N7 - C8 ANGL. DEV. = -3.3 DEGREES REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG A 5 O3' - P - OP2 ANGL. DEV. = 24.9 DEGREES REMARK 500 DG A 5 O3' - P - OP1 ANGL. DEV. = -21.7 DEGREES REMARK 500 DC A 6 O3' - P - OP2 ANGL. DEV. = 22.4 DEGREES REMARK 500 DC A 6 O3' - P - OP1 ANGL. DEV. = -20.1 DEGREES REMARK 500 DC A 6 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG A 7 O3' - P - OP1 ANGL. DEV. = -13.9 DEGREES REMARK 500 DG A 7 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT A 8 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT A 8 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA A 9 O3' - P - O5' ANGL. DEV. = 12.3 DEGREES REMARK 500 DA A 9 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC A 10 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC A 10 N1 - C2 - O2 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC A 10 N3 - C2 - O2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT A 2 0.08 SIDE CHAIN REMARK 500 DA A 3 0.07 SIDE CHAIN REMARK 500 DC A 4 0.05 SIDE CHAIN REMARK 500 DG A 5 0.06 SIDE CHAIN REMARK 500 DC A 6 0.08 SIDE CHAIN REMARK 500 DT A 8 0.08 SIDE CHAIN REMARK 500 DA A 9 0.08 SIDE CHAIN REMARK 500 DC A 10 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 395D A 1 10 PDB 395D 395D 1 10 SEQRES 1 A 10 DG DT DA DC DG DC DG DT DA DC FORMUL 2 HOH *40(H2 O) CRYST1 39.260 39.260 77.700 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025471 0.014706 0.000000 0.00000 SCALE2 0.000000 0.029412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012870 0.00000 ATOM 1 O5' DG A 1 -8.971 20.162 16.628 1.00 50.39 O ATOM 2 C5' DG A 1 -8.853 18.802 16.162 1.00 40.91 C ATOM 3 C4' DG A 1 -8.166 18.700 14.841 1.00 39.07 C ATOM 4 O4' DG A 1 -8.971 19.346 13.831 1.00 34.99 O ATOM 5 C3' DG A 1 -6.792 19.312 14.763 1.00 36.19 C ATOM 6 O3' DG A 1 -5.732 18.496 15.307 1.00 39.11 O ATOM 7 C2' DG A 1 -6.694 19.346 13.287 1.00 34.37 C ATOM 8 C1' DG A 1 -8.048 19.788 12.821 1.00 33.47 C ATOM 9 N9 DG A 1 -8.107 21.250 12.665 1.00 29.04 N ATOM 10 C8 DG A 1 -8.873 22.100 13.364 1.00 31.41 C ATOM 11 N7 DG A 1 -9.010 23.290 12.898 1.00 32.09 N ATOM 12 C5 DG A 1 -8.146 23.222 11.733 1.00 31.44 C ATOM 13 C6 DG A 1 -7.813 24.208 10.800 1.00 30.02 C ATOM 14 O6 DG A 1 -8.146 25.398 10.800 1.00 34.07 O ATOM 15 N1 DG A 1 -7.028 23.732 9.790 1.00 24.76 N ATOM 16 C2 DG A 1 -6.635 22.440 9.712 1.00 26.21 C ATOM 17 N2 DG A 1 -5.830 22.134 8.702 1.00 22.46 N ATOM 18 N3 DG A 1 -6.910 21.488 10.567 1.00 26.13 N ATOM 19 C4 DG A 1 -7.695 21.964 11.577 1.00 30.45 C ATOM 20 P DT A 2 -4.456 19.142 16.006 1.00 39.51 P ATOM 21 OP1 DT A 2 -3.671 18.122 16.705 1.00 48.49 O ATOM 22 OP2 DT A 2 -5.045 20.298 16.783 1.00 38.47 O ATOM 23 O5' DT A 2 -3.494 19.652 14.918 1.00 38.05 O ATOM 24 C5' DT A 2 -2.827 18.632 14.141 1.00 36.47 C ATOM 25 C4' DT A 2 -2.336 19.210 12.821 1.00 39.56 C ATOM 26 O4' DT A 2 -3.416 19.856 12.199 1.00 35.81 O ATOM 27 C3' DT A 2 -1.315 20.298 13.054 1.00 44.68 C ATOM 28 O3' DT A 2 -0.020 19.754 13.364 1.00 50.78 O ATOM 29 C2' DT A 2 -1.413 20.876 11.655 1.00 41.64 C ATOM 30 C1' DT A 2 -2.886 20.978 11.422 1.00 37.04 C ATOM 31 N1 DT A 2 -3.435 22.270 11.966 1.00 31.56 N ATOM 32 C2 DT A 2 -3.357 23.358 11.111 1.00 26.16 C ATOM 33 O2 DT A 2 -2.670 23.460 10.101 1.00 27.60 O ATOM 34 N3 DT A 2 -4.162 24.412 11.577 1.00 22.77 N ATOM 35 C4 DT A 2 -4.809 24.514 12.743 1.00 24.33 C ATOM 36 O4 DT A 2 -5.359 25.602 12.976 1.00 27.71 O ATOM 37 C5 DT A 2 -4.829 23.324 13.520 1.00 23.36 C ATOM 38 C7 DT A 2 -5.693 23.188 14.763 1.00 22.24 C ATOM 39 C6 DT A 2 -4.103 22.270 13.131 1.00 26.66 C ATOM 40 P DA A 3 0.883 20.434 14.530 1.00 49.98 P ATOM 41 OP1 DA A 3 2.022 19.550 14.685 1.00 52.47 O ATOM 42 OP2 DA A 3 0.078 20.944 15.695 1.00 49.13 O ATOM 43 O5' DA A 3 1.433 21.726 13.675 1.00 45.38 O ATOM 44 C5' DA A 3 2.375 21.454 12.665 1.00 41.38 C ATOM 45 C4' DA A 3 2.473 22.644 11.810 1.00 40.42 C ATOM 46 O4' DA A 3 1.178 22.984 11.344 1.00 40.52 O ATOM 47 C3' DA A 3 3.023 23.868 12.432 1.00 42.10 C ATOM 48 O3' DA A 3 4.476 23.800 12.665 1.00 42.67 O ATOM 49 C2' DA A 3 2.591 24.820 11.344 1.00 37.04 C ATOM 50 C1' DA A 3 1.139 24.412 11.111 1.00 36.11 C ATOM 51 N9 DA A 3 0.157 25.092 12.043 1.00 27.15 N ATOM 52 C8 DA A 3 -0.393 24.616 13.209 1.00 23.10 C ATOM 53 N7 DA A 3 -1.296 25.364 13.753 1.00 23.09 N ATOM 54 C5 DA A 3 -1.335 26.452 12.821 1.00 18.55 C ATOM 55 C6 DA A 3 -2.061 27.642 12.821 1.00 17.20 C ATOM 56 N6 DA A 3 -3.043 27.846 13.675 1.00 18.21 N ATOM 57 N1 DA A 3 -1.865 28.526 11.888 1.00 17.93 N ATOM 58 C2 DA A 3 -0.903 28.288 11.033 1.00 21.27 C ATOM 59 N3 DA A 3 -0.118 27.200 10.878 1.00 24.89 N ATOM 60 C4 DA A 3 -0.432 26.316 11.888 1.00 19.07 C ATOM 61 P DC A 4 5.222 24.412 13.908 1.00 45.15 P ATOM 62 OP1 DC A 4 6.615 23.970 14.064 1.00 48.52 O ATOM 63 OP2 DC A 4 4.319 24.344 15.151 1.00 40.56 O ATOM 64 O5' DC A 4 5.222 25.908 13.364 1.00 39.98 O ATOM 65 C5' DC A 4 6.007 26.316 12.277 1.00 35.40 C ATOM 66 C4' DC A 4 5.634 27.710 11.810 1.00 38.35 C ATOM 67 O4' DC A 4 4.240 27.744 11.422 1.00 36.16 O ATOM 68 C3' DC A 4 5.752 28.798 12.898 1.00 40.01 C ATOM 69 O3' DC A 4 7.086 29.342 12.976 1.00 41.56 O ATOM 70 C2' DC A 4 4.849 29.818 12.277 1.00 37.01 C ATOM 71 C1' DC A 4 3.690 28.968 11.810 1.00 34.59 C ATOM 72 N1 DC A 4 2.748 28.900 12.976 1.00 31.57 N ATOM 73 C2 DC A 4 1.767 29.920 12.976 1.00 30.91 C ATOM 74 O2 DC A 4 1.806 30.872 12.199 1.00 33.23 O ATOM 75 N3 DC A 4 0.766 29.818 13.908 1.00 26.12 N ATOM 76 C4 DC A 4 0.667 28.764 14.685 1.00 27.63 C ATOM 77 N4 DC A 4 -0.275 28.764 15.618 1.00 28.52 N ATOM 78 C5 DC A 4 1.570 27.676 14.608 1.00 28.27 C ATOM 79 C6 DC A 4 2.572 27.778 13.675 1.00 27.11 C ATOM 80 P DG A 5 7.479 29.818 14.452 1.00 44.67 P ATOM 81 OP1 DG A 5 8.873 29.784 13.908 1.00 46.90 O ATOM 82 OP2 DG A 5 7.224 29.308 15.851 1.00 44.61 O ATOM 83 O5' DG A 5 6.910 31.348 14.374 1.00 45.12 O ATOM 84 C5' DG A 5 7.381 32.368 13.520 1.00 34.35 C ATOM 85 C4' DG A 5 6.655 33.626 13.753 1.00 28.86 C ATOM 86 O4' DG A 5 5.320 33.354 13.442 1.00 31.79 O ATOM 87 C3' DG A 5 6.596 34.068 15.151 1.00 27.42 C ATOM 88 O3' DG A 5 7.754 34.850 15.462 1.00 31.82 O ATOM 89 C2' DG A 5 5.379 34.952 15.151 1.00 27.43 C ATOM 90 C1' DG A 5 4.476 34.136 14.297 1.00 30.76 C ATOM 91 N9 DG A 5 3.612 33.252 15.074 1.00 28.65 N ATOM 92 C8 DG A 5 3.789 31.926 15.385 1.00 26.08 C ATOM 93 N7 DG A 5 2.886 31.450 16.162 1.00 25.15 N ATOM 94 C5 DG A 5 2.022 32.538 16.395 1.00 26.10 C ATOM 95 C6 DG A 5 0.824 32.640 17.172 1.00 24.19 C ATOM 96 O6 DG A 5 0.236 31.756 17.793 1.00 26.94 O ATOM 97 N1 DG A 5 0.393 33.932 17.249 1.00 23.54 N ATOM 98 C2 DG A 5 0.883 34.986 16.550 1.00 20.21 C ATOM 99 N2 DG A 5 0.353 36.176 16.705 1.00 26.28 N ATOM 100 N3 DG A 5 1.924 34.884 15.695 1.00 24.04 N ATOM 101 C4 DG A 5 2.473 33.660 15.695 1.00 28.04 C ATOM 102 P DC A 6 8.362 34.748 16.939 1.00 40.01 P ATOM 103 OP1 DC A 6 9.481 35.530 16.395 1.00 48.36 O ATOM 104 OP2 DC A 6 8.598 33.592 17.871 1.00 43.23 O ATOM 105 O5' DC A 6 7.342 35.768 17.716 1.00 37.08 O ATOM 106 C5' DC A 6 7.224 37.128 17.482 1.00 30.86 C ATOM 107 C4' DC A 6 6.085 37.740 18.259 1.00 29.63 C ATOM 108 O4' DC A 6 4.829 37.196 17.871 1.00 27.69 O ATOM 109 C3' DC A 6 6.144 37.502 19.658 1.00 30.69 C ATOM 110 O3' DC A 6 7.106 38.352 20.280 1.00 39.69 O ATOM 111 C2' DC A 6 4.770 37.842 20.047 1.00 29.35 C ATOM 112 C1' DC A 6 3.946 37.162 19.036 1.00 27.38 C ATOM 113 N1 DC A 6 3.592 35.734 19.347 1.00 23.16 N ATOM 114 C2 DC A 6 2.356 35.564 19.969 1.00 23.88 C ATOM 115 O2 DC A 6 1.649 36.516 20.280 1.00 28.97 O ATOM 116 N3 DC A 6 1.924 34.272 20.124 1.00 24.99 N ATOM 117 C4 DC A 6 2.689 33.218 19.813 1.00 25.88 C ATOM 118 N4 DC A 6 2.336 31.994 20.280 1.00 26.51 N ATOM 119 C5 DC A 6 3.906 33.422 19.114 1.00 21.03 C ATOM 120 C6 DC A 6 4.240 34.680 18.803 1.00 23.91 C ATOM 121 P DG A 7 7.793 37.978 21.678 1.00 44.42 P ATOM 122 OP1 DG A 7 8.676 39.168 21.601 1.00 50.74 O ATOM 123 OP2 DG A 7 8.402 36.584 21.678 1.00 49.43 O ATOM 124 O5' DG A 7 6.556 38.148 22.611 1.00 35.43 O ATOM 125 C5' DG A 7 6.478 37.536 23.932 1.00 30.65 C ATOM 126 C4' DG A 7 5.123 37.842 24.398 1.00 31.73 C ATOM 127 O4' DG A 7 4.142 37.366 23.465 1.00 32.68 O ATOM 128 C3' DG A 7 4.829 37.128 25.719 1.00 34.28 C ATOM 129 O3' DG A 7 5.300 37.944 26.806 1.00 39.89 O ATOM 130 C2' DG A 7 3.337 36.924 25.641 1.00 29.04 C ATOM 131 C1' DG A 7 3.141 36.584 24.165 1.00 26.63 C ATOM 132 N9 DG A 7 3.337 35.156 23.854 1.00 23.36 N ATOM 133 C8 DG A 7 4.240 34.612 22.921 1.00 20.66 C ATOM 134 N7 DG A 7 4.044 33.320 22.766 1.00 22.44 N ATOM 135 C5 DG A 7 2.886 33.014 23.465 1.00 22.19 C ATOM 136 C6 DG A 7 2.218 31.790 23.698 1.00 25.31 C ATOM 137 O6 DG A 7 2.434 30.668 23.232 1.00 28.06 O ATOM 138 N1 DG A 7 1.099 31.960 24.475 1.00 22.53 N ATOM 139 C2 DG A 7 0.726 33.150 25.175 1.00 22.57 C ATOM 140 N2 DG A 7 -0.314 33.116 25.952 1.00 24.96 N ATOM 141 N3 DG A 7 1.335 34.272 24.942 1.00 19.40 N ATOM 142 C4 DG A 7 2.414 34.170 24.165 1.00 23.30 C ATOM 143 P DT A 8 6.046 37.196 27.972 1.00 36.29 P ATOM 144 OP1 DT A 8 6.380 38.318 28.904 1.00 38.51 O ATOM 145 OP2 DT A 8 7.086 36.346 27.350 1.00 36.15 O ATOM 146 O5' DT A 8 4.868 36.312 28.516 1.00 33.69 O ATOM 147 C5' DT A 8 3.906 36.958 29.371 1.00 33.34 C ATOM 148 C4' DT A 8 2.925 35.938 29.837 1.00 32.08 C ATOM 149 O4' DT A 8 2.414 35.258 28.671 1.00 35.28 O ATOM 150 C3' DT A 8 3.533 34.884 30.614 1.00 37.78 C ATOM 151 O3' DT A 8 3.749 35.394 31.935 1.00 45.16 O ATOM 152 C2' DT A 8 2.434 33.864 30.536 1.00 34.20 C ATOM 153 C1' DT A 8 2.100 33.898 29.060 1.00 33.03 C ATOM 154 N1 DT A 8 2.925 32.946 28.361 1.00 28.56 N ATOM 155 C2 DT A 8 2.336 31.722 28.127 1.00 29.39 C ATOM 156 O2 DT A 8 1.296 31.348 28.671 1.00 32.81 O ATOM 157 N3 DT A 8 3.003 30.906 27.195 1.00 25.77 N ATOM 158 C4 DT A 8 4.122 31.280 26.496 1.00 27.63 C ATOM 159 O4 DT A 8 4.574 30.498 25.641 1.00 33.47 O ATOM 160 C5 DT A 8 4.633 32.572 26.729 1.00 24.94 C ATOM 161 C7 DT A 8 5.771 33.116 25.952 1.00 26.59 C ATOM 162 C6 DT A 8 4.063 33.354 27.661 1.00 26.01 C ATOM 163 P DA A 9 4.574 34.578 33.022 1.00 52.38 P ATOM 164 OP1 DA A 9 4.122 35.428 34.110 1.00 51.32 O ATOM 165 OP2 DA A 9 6.026 34.578 32.556 1.00 52.46 O ATOM 166 O5' DA A 9 4.063 33.082 33.333 1.00 47.26 O ATOM 167 C5' DA A 9 2.905 32.912 34.110 1.00 43.35 C ATOM 168 C4' DA A 9 2.454 31.518 33.955 1.00 44.44 C ATOM 169 O4' DA A 9 2.375 31.246 32.556 1.00 46.53 O ATOM 170 C3' DA A 9 3.494 30.532 34.421 1.00 46.24 C ATOM 171 O3' DA A 9 3.474 30.362 35.820 1.00 50.65 O ATOM 172 C2' DA A 9 3.023 29.308 33.644 1.00 44.36 C ATOM 173 C1' DA A 9 2.591 29.852 32.323 1.00 39.21 C ATOM 174 N9 DA A 9 3.690 29.648 31.391 1.00 32.40 N ATOM 175 C8 DA A 9 4.593 30.532 30.925 1.00 28.60 C ATOM 176 N7 DA A 9 5.123 30.158 29.759 1.00 30.10 N ATOM 177 C5 DA A 9 4.554 28.900 29.526 1.00 29.55 C ATOM 178 C6 DA A 9 4.829 27.880 28.594 1.00 29.35 C ATOM 179 N6 DA A 9 5.693 28.016 27.661 1.00 30.14 N ATOM 180 N1 DA A 9 4.162 26.724 28.749 1.00 31.22 N ATOM 181 C2 DA A 9 3.239 26.622 29.681 1.00 30.10 C ATOM 182 N3 DA A 9 2.886 27.506 30.614 1.00 31.51 N ATOM 183 C4 DA A 9 3.651 28.628 30.536 1.00 28.52 C ATOM 184 P DC A 10 4.829 29.920 36.597 1.00 52.35 P ATOM 185 OP1 DC A 10 4.476 30.328 37.995 1.00 48.18 O ATOM 186 OP2 DC A 10 6.066 30.430 35.975 1.00 47.85 O ATOM 187 O5' DC A 10 4.888 28.322 36.519 1.00 43.81 O ATOM 188 C5' DC A 10 3.867 27.438 36.985 1.00 37.44 C ATOM 189 C4' DC A 10 4.083 26.044 36.364 1.00 37.92 C ATOM 190 O4' DC A 10 3.847 26.044 34.965 1.00 34.75 O ATOM 191 C3' DC A 10 5.536 25.772 36.597 1.00 34.99 C ATOM 192 O3' DC A 10 5.693 25.092 37.840 1.00 36.51 O ATOM 193 C2' DC A 10 5.928 24.956 35.431 1.00 30.80 C ATOM 194 C1' DC A 10 4.888 25.262 34.343 1.00 32.41 C ATOM 195 N1 DC A 10 5.496 25.908 33.178 1.00 26.25 N ATOM 196 C2 DC A 10 5.614 25.160 32.012 1.00 26.24 C ATOM 197 O2 DC A 10 5.065 24.072 31.857 1.00 33.82 O ATOM 198 N3 DC A 10 6.340 25.602 31.002 1.00 22.22 N ATOM 199 C4 DC A 10 6.910 26.792 31.080 1.00 23.40 C ATOM 200 N4 DC A 10 7.656 27.200 30.070 1.00 21.38 N ATOM 201 C5 DC A 10 6.772 27.642 32.245 1.00 22.41 C ATOM 202 C6 DC A 10 6.026 27.166 33.256 1.00 21.14 C TER 203 DC A 10 HETATM 204 O HOH A 101 3.612 29.185 17.579 1.00 42.65 O HETATM 205 O HOH A 102 7.144 31.164 18.233 1.00 47.06 O HETATM 206 O HOH A 103 -4.941 19.345 8.432 1.00 44.64 O HETATM 207 O HOH A 104 5.383 29.917 19.573 1.00 45.39 O HETATM 208 O HOH A 105 5.754 31.546 22.088 1.00 48.05 O HETATM 209 O HOH A 106 -2.093 23.817 32.296 0.50 48.90 O HETATM 210 O HOH A 107 7.074 34.271 20.641 1.00 49.98 O HETATM 211 O HOH A 108 2.983 32.838 10.514 1.00 52.06 O HETATM 212 O HOH A 109 3.248 33.744 40.106 1.00 53.41 O HETATM 213 O HOH A 110 -0.222 20.910 9.054 1.00 53.49 O HETATM 214 O HOH A 111 -0.799 31.911 30.878 1.00 54.45 O HETATM 215 O HOH A 112 -1.602 16.222 15.832 1.00 52.36 O HETATM 216 O HOH A 113 -1.989 22.326 16.653 1.00 52.66 O HETATM 217 O HOH A 114 4.744 27.303 16.458 1.00 53.32 O HETATM 218 O HOH A 115 -0.974 21.192 17.938 1.00 55.04 O HETATM 219 O HOH A 116 -1.052 33.559 32.721 1.00 55.46 O HETATM 220 O HOH A 117 7.577 26.744 39.218 1.00 55.71 O HETATM 221 O HOH A 118 4.319 22.142 18.687 1.00 67.62 O HETATM 222 O HOH A 119 -4.208 17.874 10.592 1.00 61.62 O HETATM 223 O HOH A 120 1.733 27.314 8.905 1.00 62.08 O HETATM 224 O HOH A 121 -10.514 25.485 13.304 1.00 63.50 O HETATM 225 O HOH A 122 0.001 29.535 19.422 0.50 64.12 O HETATM 226 O HOH A 123 -3.049 25.123 15.670 1.00 65.32 O HETATM 227 O HOH A 124 6.930 34.346 36.378 1.00 65.33 O HETATM 228 O HOH A 125 2.771 16.248 16.846 1.00 68.86 O HETATM 229 O HOH A 126 12.045 34.720 14.850 1.00 71.11 O HETATM 230 O HOH A 127 9.642 30.004 17.488 1.00 73.16 O HETATM 231 O HOH A 128 -0.194 26.725 16.734 1.00 74.77 O HETATM 232 O HOH A 129 4.066 29.167 22.241 1.00 75.95 O HETATM 233 O HOH A 130 0.980 29.113 37.955 1.00 79.12 O HETATM 234 O HOH A 131 7.019 30.353 9.155 1.00 80.17 O HETATM 235 O HOH A 132 10.739 32.280 16.103 1.00 83.58 O HETATM 236 O HOH A 133 -1.355 24.680 7.474 1.00 87.27 O HETATM 237 O HOH A 134 8.650 33.487 23.051 1.00 87.66 O HETATM 238 O HOH A 135 7.664 36.930 31.623 1.00 81.97 O HETATM 239 O HOH A 136 7.842 26.563 17.206 1.00 82.89 O HETATM 240 O HOH A 137 5.148 20.095 16.969 1.00 83.78 O HETATM 241 O HOH A 138 12.670 35.167 12.870 1.00 83.79 O HETATM 242 O HOH A 139 -2.931 30.354 30.009 1.00 85.21 O HETATM 243 O HOH A 140 7.264 31.282 29.403 1.00 87.52 O MASTER 352 0 0 0 0 0 0 6 242 1 0 1 END