0.021829
0.012603
0.000000
0.000000
0.025206
0.000000
0.000000
0.000000
0.020416
0.00000
0.00000
0.00000
Miyazono, K.
Nagata, K.
Saigo, K.
Kojima, T.
Tanokura, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
45.810
45.810
48.980
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
CL
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
N
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
Y
130
N
C
Y
131
N
N
Y
132
N
C
Y
133
N
C
Y
134
N
N
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
S
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
N
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
S
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
R
C
N
297
N
O
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
N
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
29
1613
1623
10.1038/emboj.2010.53
20389279
Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
2010
10.2210/pdb3a02/pdb
pdb_00003a02
100
1
CCD
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
1.0
AR-NW12A
Photon Factory
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
7301.347
Homeobox protein aristaless
Homeobox, residues 91-146
1
man
polymer
112.411
CADMIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
99
nat
water
no
no
GSHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV
GSHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fruit fly
sample
al, CG3935
7227
Drosophila melanogaster
562
Escherichia coli
1
2.03
39.47
VAPOR DIFFUSION, SITTING DROP
4.8
30% PEG 400, 0.1M Cadmium chloride, 0.1M Acetate, pH 4.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-03-09
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Aristaless and Clawless homeodomains bound to DNA
Hox11L1 homeodomain
PDBJ
Y
PDBJ
2009-02-28
REL
REL
CD
CADMIUM ION
CL
CHLORIDE ION
HOH
water
1FJL
PDB ENTRY 1FJL
PDB
experimental model
CD
1
2
CD
CD
1
A
CL
1
3
CL
CL
147
A
HOH
2
4
HOH
HOH
2
A
HOH
3
4
HOH
HOH
3
A
HOH
4
4
HOH
HOH
4
A
HOH
5
4
HOH
HOH
5
A
HOH
6
4
HOH
HOH
6
A
HOH
7
4
HOH
HOH
7
A
HOH
8
4
HOH
HOH
8
A
HOH
9
4
HOH
HOH
9
A
HOH
10
4
HOH
HOH
10
A
HOH
11
4
HOH
HOH
11
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
16
4
HOH
HOH
16
A
HOH
17
4
HOH
HOH
17
A
HOH
18
4
HOH
HOH
18
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
21
4
HOH
HOH
21
A
HOH
22
4
HOH
HOH
22
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
26
4
HOH
HOH
26
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
34
4
HOH
HOH
34
A
HOH
35
4
HOH
HOH
35
A
HOH
36
4
HOH
HOH
36
A
HOH
37
4
HOH
HOH
37
A
HOH
38
4
HOH
HOH
38
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
42
4
HOH
HOH
42
A
HOH
43
4
HOH
HOH
43
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
47
4
HOH
HOH
47
A
HOH
48
4
HOH
HOH
48
A
HOH
49
4
HOH
HOH
49
A
HOH
50
4
HOH
HOH
50
A
HOH
51
4
HOH
HOH
51
A
HOH
52
4
HOH
HOH
52
A
HOH
53
4
HOH
HOH
53
A
HOH
54
4
HOH
HOH
54
A
HOH
55
4
HOH
HOH
55
A
HOH
56
4
HOH
HOH
56
A
HOH
57
4
HOH
HOH
57
A
HOH
58
4
HOH
HOH
58
A
HOH
59
4
HOH
HOH
59
A
HOH
60
4
HOH
HOH
60
A
HOH
61
4
HOH
HOH
61
A
HOH
62
4
HOH
HOH
62
A
HOH
63
4
HOH
HOH
63
A
HOH
64
4
HOH
HOH
64
A
HOH
65
4
HOH
HOH
65
A
HOH
66
4
HOH
HOH
66
A
HOH
67
4
HOH
HOH
67
A
HOH
68
4
HOH
HOH
68
A
HOH
69
4
HOH
HOH
69
A
HOH
70
4
HOH
HOH
70
A
HOH
71
4
HOH
HOH
71
A
HOH
72
4
HOH
HOH
72
A
HOH
73
4
HOH
HOH
73
A
HOH
74
4
HOH
HOH
74
A
HOH
75
4
HOH
HOH
75
A
HOH
76
4
HOH
HOH
76
A
HOH
77
4
HOH
HOH
77
A
HOH
78
4
HOH
HOH
78
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
81
4
HOH
HOH
81
A
HOH
82
4
HOH
HOH
82
A
HOH
83
4
HOH
HOH
83
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
86
4
HOH
HOH
86
A
HOH
1
4
HOH
HOH
148
A
HOH
87
4
HOH
HOH
149
A
HOH
88
4
HOH
HOH
150
A
HOH
89
4
HOH
HOH
151
A
HOH
90
4
HOH
HOH
152
A
HOH
91
4
HOH
HOH
153
A
HOH
92
4
HOH
HOH
154
A
HOH
93
4
HOH
HOH
155
A
HOH
94
4
HOH
HOH
156
A
HOH
95
4
HOH
HOH
157
A
HOH
96
4
HOH
HOH
158
A
HOH
97
4
HOH
HOH
159
A
HOH
98
4
HOH
HOH
160
A
HOH
99
4
HOH
HOH
161
A
n
1
87
A
n
2
88
A
n
3
89
A
n
4
90
A
THR
91
n
5
THR
91
A
PHE
92
n
6
PHE
92
A
THR
93
n
7
THR
93
A
SER
94
n
8
SER
94
A
PHE
95
n
9
PHE
95
A
GLN
96
n
10
GLN
96
A
LEU
97
n
11
LEU
97
A
GLU
98
n
12
GLU
98
A
GLU
99
n
13
GLU
99
A
LEU
100
n
14
LEU
100
A
GLU
101
n
15
GLU
101
A
LYS
102
n
16
LYS
102
A
ALA
103
n
17
ALA
103
A
PHE
104
n
18
PHE
104
A
SER
105
n
19
SER
105
A
ARG
106
n
20
ARG
106
A
THR
107
n
21
THR
107
A
HIS
108
n
22
HIS
108
A
TYR
109
n
23
TYR
109
A
PRO
110
n
24
PRO
110
A
ASP
111
n
25
ASP
111
A
VAL
112
n
26
VAL
112
A
PHE
113
n
27
PHE
113
A
THR
114
n
28
THR
114
A
ARG
115
n
29
ARG
115
A
GLU
116
n
30
GLU
116
A
GLU
117
n
31
GLU
117
A
LEU
118
n
32
LEU
118
A
ALA
119
n
33
ALA
119
A
MET
120
n
34
MET
120
A
LYS
121
n
35
LYS
121
A
ILE
122
n
36
ILE
122
A
GLY
123
n
37
GLY
123
A
LEU
124
n
38
LEU
124
A
THR
125
n
39
THR
125
A
GLU
126
n
40
GLU
126
A
ALA
127
n
41
ALA
127
A
ARG
128
n
42
ARG
128
A
ILE
129
n
43
ILE
129
A
GLN
130
n
44
GLN
130
A
VAL
131
n
45
VAL
131
A
TRP
132
n
46
TRP
132
A
PHE
133
n
47
PHE
133
A
GLN
134
n
48
GLN
134
A
ASN
135
n
49
ASN
135
A
ARG
136
n
50
ARG
136
A
ARG
137
n
51
ARG
137
A
ALA
138
n
52
ALA
138
A
LYS
139
n
53
LYS
139
A
TRP
140
n
54
TRP
140
A
ARG
141
n
55
ARG
141
A
n
56
142
A
n
57
143
A
n
58
144
A
n
59
145
A
n
60
146
A
9.1266
1.2876
-1.0491
5.2073
1.5223
12.7429
-0.4326
-0.0940
0.5634
-0.6683
0.3067
0.6483
-0.2748
-0.1840
0.1260
0.0957
-0.0315
-0.0931
0.0291
0.0290
0.1087
refined
30.5430
24.6270
0.3960
X-RAY DIFFRACTION
1.1840
-0.3797
1.0510
0.1460
-0.2644
1.2369
0.0186
0.0237
-0.0116
0.0097
-0.0008
0.0005
0.0262
0.0305
-0.0178
0.0718
-0.0305
-0.0008
0.0352
0.0018
0.0278
refined
32.2180
18.4870
-0.1900
X-RAY DIFFRACTION
2.4728
-1.7870
-0.7584
1.3159
0.3158
2.8900
-0.0025
0.0868
-0.0427
0.0003
-0.0548
0.0214
0.0552
-0.0324
0.0574
0.0385
-0.0184
-0.0068
0.0307
-0.0088
0.0526
refined
30.1430
11.1230
0.0700
X-RAY DIFFRACTION
0.3775
-1.0477
0.5983
4.4731
0.6235
4.3492
0.1611
-0.0478
0.0321
-0.3075
0.0660
-0.2642
0.4257
-0.1239
-0.2271
0.1500
-0.0761
0.0229
0.0563
-0.0193
0.0333
refined
30.0460
6.5890
5.7850
X-RAY DIFFRACTION
5.3223
3.0028
0.2996
4.7716
0.1312
0.2445
0.0086
-0.0893
-0.1366
-0.0420
0.0076
-0.1655
0.0889
-0.0116
-0.0161
0.0417
-0.0151
-0.0066
0.0360
-0.0110
0.0349
refined
36.9960
11.8710
12.0060
X-RAY DIFFRACTION
3.8549
2.8841
-3.9536
10.2672
-5.3216
4.7545
-0.2501
0.1528
0.0287
-0.1796
0.2268
-0.2114
0.2440
-0.1923
0.0232
0.0335
-0.0238
0.0090
0.0528
-0.0064
0.0320
refined
39.5840
17.8510
6.6090
X-RAY DIFFRACTION
1.2998
0.7164
-1.9977
0.7702
-0.6673
3.8482
0.0160
0.0541
0.0434
-0.0114
0.0363
-0.0173
-0.0662
-0.1687
-0.0523
0.0302
-0.0112
-0.0098
0.0572
-0.0005
0.0381
refined
34.4780
21.1950
9.8990
X-RAY DIFFRACTION
1.8748
1.0562
1.1964
1.2540
-0.0417
1.5481
-0.0692
0.0753
0.0038
-0.0097
0.0544
-0.0071
-0.0629
0.0259
0.0148
0.0305
-0.0120
-0.0063
0.0496
-0.0005
0.0337
refined
26.9540
16.0060
9.7480
X-RAY DIFFRACTION
0.3791
-0.6760
0.5639
1.2215
-0.8368
3.1933
0.0244
-0.0098
-0.0234
-0.0384
0.0003
0.0477
0.1452
-0.1207
-0.0247
0.0375
-0.0243
-0.0092
0.0544
-0.0007
0.0330
refined
20.1090
9.7480
5.8670
X-RAY DIFFRACTION
A
91
A
95
X-RAY DIFFRACTION
1
A
96
A
100
X-RAY DIFFRACTION
2
A
101
A
105
X-RAY DIFFRACTION
3
A
106
A
110
X-RAY DIFFRACTION
4
A
111
A
116
X-RAY DIFFRACTION
5
A
117
A
121
X-RAY DIFFRACTION
6
A
122
A
127
X-RAY DIFFRACTION
7
A
128
A
135
X-RAY DIFFRACTION
8
A
136
A
141
X-RAY DIFFRACTION
9
author_and_software_defined_assembly
PISA
1
monomeric
A
GLU
126
A
OE1
GLU
40
1_555
A
CD
1
B
CD
CD
1_555
A
GLU
126
A
OE2
GLU
40
1_555
54.6
A
GLU
126
A
OE1
GLU
40
1_555
A
CD
1
B
CD
CD
1_555
A
GLN
130
A
OE1
GLN
44
1_555
111.1
A
GLU
126
A
OE2
GLU
40
1_555
A
CD
1
B
CD
CD
1_555
A
GLN
130
A
OE1
GLN
44
1_555
85.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
3
D
HOH
1
A
CD1
PHE
113
A
CD1
PHE
27
1
Y
1
A
CD2
PHE
113
A
CD2
PHE
27
1
Y
1
A
CE1
PHE
113
A
CE1
PHE
27
1
Y
1
A
CE2
PHE
113
A
CE2
PHE
27
1
Y
1
A
CZ
PHE
113
A
CZ
PHE
27
1
Y
1
A
OE1
GLU
117
A
OE1
GLU
31
1
Y
1
A
OE2
GLU
117
A
OE2
GLU
31
1
Y
1
A
CD
ARG
128
A
CD
ARG
42
1
Y
1
A
NE
ARG
128
A
NE
ARG
42
1
Y
1
A
CZ
ARG
128
A
CZ
ARG
42
1
Y
1
A
NH1
ARG
128
A
NH1
ARG
42
1
Y
1
A
NH2
ARG
128
A
NH2
ARG
42
1
Y
1
A
GLY
87
A
GLY
1
1
Y
1
A
SER
88
A
SER
2
1
Y
1
A
HIS
89
A
HIS
3
1
Y
1
A
MET
90
A
MET
4
1
Y
1
A
LYS
142
A
LYS
56
1
Y
1
A
GLN
143
A
GLN
57
1
Y
1
A
GLU
144
A
GLU
58
1
Y
1
A
LYS
145
A
LYS
59
1
Y
1
A
VAL
146
A
VAL
60
1
Y
1
A
A
OD1
O
ASP
HOH
111
84
2.06
1
A
A
O
O
HOH
HOH
34
82
2.13
1
A
A
O
O
HOH
HOH
14
78
2.19
1
-4.14
0.50
120.30
116.16
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
106
106
106
N
1
4.37
0.50
120.30
124.67
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
106
106
106
N
1
9.96
1.60
100.20
110.16
A
A
A
CG
SD
CE
MET
MET
MET
120
120
120
N
1
-3.15
0.50
120.30
117.15
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
136
136
136
N
1
3.53
0.50
120.30
123.83
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
136
136
136
N
1
A
A
O
O
HOH
HOH
65
78
2.13
1_555
3_665
1
A
A
O
O
HOH
HOH
66
81
2.17
1_555
6_765
64.85
10.254
2.00
0.190
0.100
0.000
0.190
0.000
-0.290
0.950
0.936
0.18436
0.17219
0.17279
1.000
13.23
1633
30595
32228
5.100
98.950
1.00
0.50
0.357
0.015
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.024
0.025
0.800
0.800
1.400
PDB ENTRY 1FJL
MAXIMUM LIKELIHOOD
MASK
1.000
13.23
99
532
2
0
431
0.024
0.022
444
1.943
1.920
597
4.300
5.000
50
27.393
22.174
23
13.198
15.000
83
17.137
15.000
5
0.145
0.200
64
0.015
0.020
331
0.770
1.500
254
1.595
2.000
411
2.941
3.000
190
3.961
4.500
186
0.193
0.194
1.026
125
2213
2338
20
99.830
9.186
0.057
1.000
39.670
3A02
32230
-3.00
0.083
0.087
1
18.230
327246
99.000
0.269
0.450
1.00
1.03
5.8
23071
2344
2340
0.48
99.80
0.205
0.345
1.03
1.05
7.2
23104
2331
2331
0.36
100.00
0.161
0.272
1.05
1.08
8.7
22458
2258
2258
0.29
100.00
0.124
0.212
1.08
1.12
10.6
22352
2214
2214
0.22
100.00
0.096
0.165
1.12
1.15
12.9
21392
2105
2105
0.17
100.00
0.079
0.145
1.15
1.20
14.4
20935
2050
2050
0.15
100.00
0.074
0.132
1.20
1.24
15.4
20641
2004
2004
0.14
100.00
0.065
0.123
1.24
1.29
16.7
19793
1914
1914
0.13
100.00
0.051
0.108
1.29
1.35
19.0
19225
1844
1844
0.11
100.00
0.045
0.096
1.35
1.41
21.0
18213
1748
1748
0.10
100.00
0.040
0.085
1.41
1.49
23.1
17733
1691
1691
0.09
100.00
0.035
0.078
1.49
1.58
25.3
16876
1604
1604
0.08
100.00
0.029
0.071
1.58
1.69
27.5
15823
1499
1499
0.07
100.00
0.026
0.068
1.69
1.83
28.9
14774
1404
1403
0.07
99.90
0.024
0.064
1.83
2.00
30.5
13715
1301
1301
0.07
100.00
0.024
0.062
2.00
2.24
32.0
12270
1180
1180
0.06
100.00
0.024
0.062
2.24
2.58
32.6
10557
1052
1041
0.07
99.00
0.024
0.064
2.58
3.16
31.6
8247
892
869
0.07
97.40
0.028
0.063
3.16
4.47
28.1
4279
717
573
0.07
79.90
0.028
0.066
4.47
26.2
1788
419
261
0.07
62.30
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
24/04/2001
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
refmac_5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
Crystal structure of Aristaless homeodomain
1
N
N
2
N
N
3
N
N
4
N
N
A
THR
93
A
THR
7
HELX_P
A
THR
107
A
THR
21
1
1
15
A
ASP
111
A
ASP
25
HELX_P
A
GLY
123
A
GLY
37
1
2
13
A
THR
125
A
THR
39
HELX_P
A
ARG
141
A
ARG
55
1
3
17
metalc
2.269
A
CD
1
B
CD
CD
1_555
A
GLU
126
A
OE1
GLU
40
1_555
metalc
2.546
A
CD
1
B
CD
CD
1_555
A
GLU
126
A
OE2
GLU
40
1_555
metalc
2.270
A
CD
1
B
CD
CD
1_555
A
GLN
130
A
OE1
GLN
44
1_555
GENE REGULATION
HOMEODOMAIN, Developmental protein, DNA-binding, Homeobox, Nucleus, Gene Regulation
AL_DROME
UNP
1
91
Q06453
TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV
91
146
3A02
91
146
Q06453
A
1
5
60
1
expression tag
GLY
87
3A02
A
Q06453
UNP
1
1
expression tag
SER
88
3A02
A
Q06453
UNP
2
1
expression tag
HIS
89
3A02
A
Q06453
UNP
3
1
expression tag
MET
90
3A02
A
Q06453
UNP
4
BINDING SITE FOR RESIDUE CD A 1
A
CD
1
Software
4
BINDING SITE FOR RESIDUE CL A 147
A
CL
147
Software
4
A
GLU
116
A
GLU
30
4
6_765
A
GLU
126
A
GLU
40
4
1_555
A
GLN
130
A
GLN
44
4
1_555
A
CL
147
C
CL
4
1_555
A
CD
1
B
CD
4
1_555
A
GLU
126
A
GLU
40
4
6_765
A
GLU
126
A
GLU
40
4
1_555
A
GLN
130
A
GLN
44
4
1_555
154
P 32 2 1