0.022839
0.000000
0.000000
0.000000
0.022839
0.000000
0.000000
0.000000
0.008662
0.000000
0.000000
0.000000
Yamada, S.
Sugimoto, H.
Kobayashi, M.
Ohno, A.
Nakamura, H.
Shiro, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
43.784
43.784
115.448
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
S
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
S
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
R
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
N
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
N
396
N
O
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
N
414
N
C
N
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
Y
352
N
doub
Y
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
UK
Structure
STRUE6
2005
0969-2126
17
1333
1344
10.1016/j.str.2009.07.016
19836334
Structure of PAS-linked histidine kinase and the response regulator complex
2009
10.2210/pdb3a0s/pdb
pdb_00003a0s
100
1
CCD
2007-06-01
ADSC QUANTUM 210
Si 111 DOUBLE CRYSTAL MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL44B2
SPring-8
1.0
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
11219.812
Sensor protein
2.7.13.3
PAS domain
1
man
polymer
194.226
TETRAETHYLENE GLYCOL
4
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
1
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
18.015
water
50
nat
water
Histidine kinase ThkA
no
no
METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFR
NAKTQLLEGVIITIDD
METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFR
NAKTQLLEGVIITIDD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
TM_1359
2336
Thermotoga maritima
469008
Escherichia coli BL21(DE3)
BL21(DE3) CodonPlus RIL
plasmid
pRSETA
1
2.47
50.12
VAPOR DIFFUSION
50% PEG200, 0.1M sodium/potassium-phosphate pH 6.2, 0.2M sodium chloride, VAPOR DIFFUSION, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-10-20
1
1
2011-07-13
1
2
2011-08-17
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Histidine kinase ThkA (TM1359) in complex with response regulator protein TrrA (TM1360)
PDBJ
Y
PDBJ
2009-03-24
REL
REL
PG4
TETRAETHYLENE GLYCOL
PGE
TRIETHYLENE GLYCOL
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
3A0V
PDB
experimental model
PG4
600
2
PG4
PG4
600
A
PG4
601
2
PG4
PG4
601
A
PG4
602
2
PG4
PG4
602
A
PG4
603
2
PG4
PG4
603
A
PGE
604
3
PGE
PGE
604
A
PEG
605
4
PEG
PEG
605
A
HOH
1
5
HOH
HOH
1
A
HOH
2
5
HOH
HOH
2
A
HOH
3
5
HOH
HOH
3
A
HOH
4
5
HOH
HOH
4
A
HOH
5
5
HOH
HOH
5
A
HOH
6
5
HOH
HOH
6
A
HOH
7
5
HOH
HOH
7
A
HOH
8
5
HOH
HOH
8
A
HOH
9
5
HOH
HOH
9
A
HOH
10
5
HOH
HOH
10
A
HOH
11
5
HOH
HOH
11
A
HOH
12
5
HOH
HOH
12
A
HOH
13
5
HOH
HOH
13
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
17
5
HOH
HOH
17
A
HOH
18
5
HOH
HOH
18
A
HOH
19
5
HOH
HOH
19
A
HOH
20
5
HOH
HOH
20
A
HOH
21
5
HOH
HOH
21
A
HOH
22
5
HOH
HOH
22
A
HOH
23
5
HOH
HOH
23
A
HOH
24
5
HOH
HOH
24
A
HOH
25
5
HOH
HOH
25
A
HOH
26
5
HOH
HOH
26
A
HOH
27
5
HOH
HOH
27
A
HOH
28
5
HOH
HOH
28
A
HOH
29
5
HOH
HOH
29
A
HOH
30
5
HOH
HOH
30
A
HOH
31
5
HOH
HOH
31
A
HOH
32
5
HOH
HOH
32
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
35
5
HOH
HOH
35
A
HOH
36
5
HOH
HOH
36
A
HOH
37
5
HOH
HOH
37
A
HOH
38
5
HOH
HOH
38
A
HOH
39
5
HOH
HOH
39
A
HOH
40
5
HOH
HOH
40
A
HOH
41
5
HOH
HOH
41
A
HOH
42
5
HOH
HOH
42
A
HOH
43
5
HOH
HOH
43
A
HOH
44
5
HOH
HOH
44
A
HOH
45
5
HOH
HOH
45
A
HOH
46
5
HOH
HOH
46
A
HOH
47
5
HOH
HOH
47
A
HOH
48
5
HOH
HOH
48
A
HOH
49
5
HOH
HOH
49
A
HOH
50
5
HOH
HOH
50
A
MET
423
n
1
MET
423
A
GLU
424
n
2
GLU
424
A
THR
425
n
3
THR
425
A
ALA
426
n
4
ALA
426
A
ILE
427
n
5
ILE
427
A
ILE
428
n
6
ILE
428
A
THR
429
n
7
THR
429
A
LEU
430
n
8
LEU
430
A
SER
431
n
9
SER
431
A
LYS
432
n
10
LYS
432
A
ASP
433
n
11
ASP
433
A
GLY
434
n
12
GLY
434
A
ARG
435
n
13
ARG
435
A
ILE
436
n
14
ILE
436
A
THR
437
n
15
THR
437
A
GLU
438
n
16
GLU
438
A
TRP
439
n
17
TRP
439
A
ASN
440
n
18
ASN
440
A
LYS
441
n
19
LYS
441
A
LYS
442
n
20
LYS
442
A
ALA
443
n
21
ALA
443
A
GLU
444
n
22
GLU
444
A
GLN
445
n
23
GLN
445
A
LEU
446
n
24
LEU
446
A
PHE
447
n
25
PHE
447
A
GLY
448
n
26
GLY
448
A
LEU
449
n
27
LEU
449
A
LYS
450
n
28
LYS
450
A
LYS
451
n
29
LYS
451
A
GLU
452
n
30
GLU
452
A
ASN
453
n
31
ASN
453
A
VAL
454
n
32
VAL
454
A
LEU
455
n
33
LEU
455
A
GLY
456
n
34
GLY
456
A
ARG
457
n
35
ARG
457
A
ARG
458
n
36
ARG
458
A
LEU
459
n
37
LEU
459
A
LYS
460
n
38
LYS
460
A
ASP
461
n
39
ASP
461
A
LEU
462
n
40
LEU
462
A
PRO
463
n
41
PRO
463
A
ASP
464
n
42
ASP
464
A
PHE
465
n
43
PHE
465
A
GLU
466
n
44
GLU
466
A
GLU
467
n
45
GLU
467
A
ILE
468
n
46
ILE
468
A
GLY
469
n
47
GLY
469
A
SER
470
n
48
SER
470
A
VAL
471
n
49
VAL
471
A
ALA
472
n
50
ALA
472
A
GLU
473
n
51
GLU
473
A
SER
474
n
52
SER
474
A
VAL
475
n
53
VAL
475
A
PHE
476
n
54
PHE
476
A
GLU
477
n
55
GLU
477
A
ASN
478
n
56
ASN
478
A
LYS
479
n
57
LYS
479
A
GLU
480
n
58
GLU
480
A
PRO
481
n
59
PRO
481
A
VAL
482
n
60
VAL
482
A
PHE
483
n
61
PHE
483
A
LEU
484
n
62
LEU
484
A
ASN
485
n
63
ASN
485
A
PHE
486
n
64
PHE
486
A
TYR
487
n
65
TYR
487
A
LYS
488
n
66
LYS
488
A
PHE
489
n
67
PHE
489
A
GLY
490
n
68
GLY
490
A
GLU
491
n
69
GLU
491
A
ARG
492
n
70
ARG
492
A
TYR
493
n
71
TYR
493
A
PHE
494
n
72
PHE
494
A
ASN
495
n
73
ASN
495
A
ILE
496
n
74
ILE
496
A
ARG
497
n
75
ARG
497
A
PHE
498
n
76
PHE
498
A
SER
499
n
77
SER
499
A
PRO
500
n
78
PRO
500
A
PHE
501
n
79
PHE
501
A
ARG
502
n
80
ARG
502
A
ASN
503
n
81
ASN
503
A
ALA
504
n
82
ALA
504
A
LYS
505
n
83
LYS
505
A
THR
506
n
84
THR
506
A
GLN
507
n
85
GLN
507
A
LEU
508
n
86
LEU
508
A
LEU
509
n
87
LEU
509
A
GLU
510
n
88
GLU
510
A
GLY
511
n
89
GLY
511
A
VAL
512
n
90
VAL
512
A
ILE
513
n
91
ILE
513
A
ILE
514
n
92
ILE
514
A
THR
515
n
93
THR
515
A
ILE
516
n
94
ILE
516
A
ASP
517
n
95
ASP
517
A
ASP
518
n
96
ASP
518
A
0.7741
0.1065
-0.2412
0.3742
-0.2945
1.9226
0.0224
0.0758
0.0461
-0.0407
-0.0099
0.0163
0.1964
-0.0777
-0.0125
-0.0879
-0.0062
-0.0056
-0.0210
-0.0033
-0.0755
refined
8.7580
5.1280
42.9290
X-RAY DIFFRACTION
A
423
A
518
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
437
A
O
THR
15
A
N
THR
429
A
N
THR
7
A
N
ILE
428
A
N
ILE
6
A
O
ILE
514
A
O
ILE
92
A
O
ASP
517
A
O
ASP
95
A
N
ASN
495
A
N
ASN
73
A
O
ILE
496
A
O
ILE
74
A
N
LEU
484
A
N
LEU
62
1
A
ASP
464
102.82
-19.22
61.41
27.384
11.95
0.570
0.000
0.000
0.570
0.000
-1.140
0.953
0.943
0.234
0.210
0.211
1.470
20.000
967
19680
4.900
98.730
1.00
0.50
2.510
0.047
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.079
0.079
0.800
0.800
1.400
3A0V
MAXIMUM LIKELIHOOD
MASK
1.470
20.000
50
912
69
0
793
0.012
0.022
901
1.522
2.022
1183
6.024
5.000
95
30.907
23.913
46
14.520
15.000
167
17.113
15.000
8
0.106
0.200
124
0.006
0.020
629
0.229
0.200
387
0.310
0.200
602
0.143
0.200
47
0.197
0.200
57
0.116
0.200
21
1.055
1.500
498
1.593
2.000
790
2.691
3.000
442
3.955
4.500
393
0.295
0.255
1.508
65
1197
1262
20
87.520
20.2
1.47
30.00
3A0S
19750
-3.0
0.047
1
41.5
18.2
98.7
1.47
1.52
3.5
0.334
1
6.0
88.9
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
phasing
REFMAC
5.2.0019
N
PAS domain of histidine kinase ThkA (TM1359)
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
ASN
440
A
ASN
18
HELX_P
A
GLY
448
A
GLY
26
1
1
9
A
LYS
450
A
LYS
28
HELX_P
A
LEU
455
A
LEU
33
1
2
6
A
ARG
458
A
ARG
36
HELX_P
A
LEU
462
A
LEU
40
5
3
5
A
PHE
465
A
PHE
43
HELX_P
A
LYS
479
A
LYS
57
1
4
15
TRANSFERASE
PAS-fold, Kinase, Phosphoprotein, Transferase, Two-component regulatory system
Q9X180_THEMA
UNP
1
424
Q9X180
ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRN
AKTQLLEGVIITIDD
424
518
3A0S
424
518
Q9X180
A
1
2
96
1
expression tag
MET
423
3A0S
A
Q9X180
UNP
1
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
436
A
ILE
14
A
TRP
439
A
TRP
17
A
ALA
426
A
ALA
4
A
SER
431
A
SER
9
A
LEU
509
A
LEU
87
A
ASP
517
A
ASP
95
A
ARG
492
A
ARG
70
A
ARG
502
A
ARG
80
A
VAL
482
A
VAL
60
A
PHE
489
A
PHE
67
BINDING SITE FOR RESIDUE PG4 A 600
A
PG4
600
Software
12
BINDING SITE FOR RESIDUE PG4 A 601
A
PG4
601
Software
5
BINDING SITE FOR RESIDUE PG4 A 602
A
PG4
602
Software
8
BINDING SITE FOR RESIDUE PG4 A 603
A
PG4
603
Software
6
BINDING SITE FOR RESIDUE PGE A 604
A
PGE
604
Software
3
BINDING SITE FOR RESIDUE PEG A 605
A
PEG
605
Software
5
A
HOH
8
H
HOH
12
1_555
A
LEU
430
A
LEU
8
12
1_555
A
SER
431
A
SER
9
12
1_555
A
LYS
432
A
LYS
10
12
1_555
A
ASP
433
A
ASP
11
12
1_555
A
GLY
434
A
GLY
12
12
1_555
A
ARG
458
A
ARG
36
12
1_555
A
LYS
460
A
LYS
38
12
1_555
A
GLY
469
A
GLY
47
12
1_555
A
ALA
472
A
ALA
50
12
1_555
A
GLU
473
A
GLU
51
12
1_555
A
PHE
476
A
PHE
54
12
1_555
A
HOH
44
H
HOH
5
1_555
A
THR
437
A
THR
15
5
6_455
A
GLU
438
A
GLU
16
5
6_455
A
PHE
501
A
PHE
79
5
6_455
A
GLU
510
A
GLU
88
5
6_455
A
HOH
16
H
HOH
8
4_554
A
MET
423
A
MET
1
8
1_555
A
LYS
432
A
LYS
10
8
4_554
A
PHE
476
A
PHE
54
8
4_554
A
GLU
477
A
GLU
55
8
4_554
A
ARG
492
A
ARG
70
8
1_555
A
LEU
509
A
LEU
87
8
4_554
A
ASP
518
A
ASP
96
8
1_555
A
ASN
485
A
ASN
63
6
1_555
A
PHE
486
A
PHE
64
6
1_555
A
PHE
494
A
PHE
72
6
1_555
A
ASN
495
A
ASN
73
6
1_555
A
PHE
501
A
PHE
79
6
4_554
A
ARG
502
A
ARG
80
6
4_554
A
LYS
488
A
LYS
66
3
1_555
A
GLY
490
A
GLY
68
3
1_555
A
PEG
605
G
PEG
3
1_555
A
LEU
446
A
LEU
24
5
1_555
A
PHE
489
A
PHE
67
5
1_555
A
GLU
491
A
GLU
69
5
1_555
A
ARG
492
A
ARG
70
5
1_555
A
PGE
604
F
PGE
5
1_555
92
P 41 21 2