0.008114 0.004685 0.000000 0.000000 0.009369 0.000000 0.000000 0.000000 0.022297 0.00000 0.00000 0.00000 Imamura, K. Wallace, S. Doublie, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 123.241 123.241 44.849 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N S N 305 N O N 306 N O N 307 N O N 308 N O N 309 N N N 310 S C N 311 N C N 312 N O N 313 R C N 314 N O N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N N Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N C N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 284 26174 26183 10.1074/jbc.M109.021907 19625256 Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA 2009 10.2210/pdb3a42/pdb pdb_00003a42 100 1 IMAGE PLATE 2006-10-11 MARRESEARCH MAR mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 34582.352 Formamidopyrimidine-DNA glycosylase 3.2.2.23 1 man polymer 92.094 GLYCEROL 3 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 82 nat water Fapy-DNA glycosylase, DNA-(apurinic or apyrimidinic site) lyase, AP lyase, Endonuclease VIII MvNei1 no no MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWN TFGLTGMWSLFEAKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFLKNDDIDISKIKKYKQPIVAL LMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPN IHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAPAIQKLEHHHHHH MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWN TFGLTGMWSLFEAKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFLKNDDIDISKIKKYKQPIVAL LMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPN IHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAPAIQKLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n APMV sample L315, MIMI_L315 212035 Acanthamoeba polyphaga mimivirus 562 Escherichia coli Rosetta(DE3)pLys plasmid pET22b 1 2.84 56.74 VAPOR DIFFUSION, HANGING DROP 6.3 PEG2000MME, ammonium sulfate, pH6.3, VAPOR DIFFUSION, HANGING DROP, temperature 285K 285 software chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Non-polymer description Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2009-07-21 1 1 2011-07-13 1 2 2017-10-11 1 3 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2009-06-30 REL REL GOL GLYCEROL SO4 SULFATE ION HOH water GOL 401 2 GOL GOL 401 A GOL 402 2 GOL GOL 402 A GOL 403 2 GOL GOL 403 A SO4 504 3 SO4 SO4 504 A HOH 1 4 HOH HOH 296 A HOH 2 4 HOH HOH 297 A HOH 3 4 HOH HOH 298 A HOH 4 4 HOH HOH 299 A HOH 5 4 HOH HOH 300 A HOH 6 4 HOH HOH 301 A HOH 7 4 HOH HOH 302 A HOH 8 4 HOH HOH 303 A HOH 9 4 HOH HOH 304 A HOH 10 4 HOH HOH 305 A HOH 11 4 HOH HOH 306 A HOH 12 4 HOH HOH 307 A HOH 13 4 HOH HOH 308 A HOH 14 4 HOH HOH 309 A HOH 15 4 HOH HOH 310 A HOH 16 4 HOH HOH 311 A HOH 17 4 HOH HOH 312 A HOH 18 4 HOH HOH 313 A HOH 19 4 HOH HOH 314 A HOH 20 4 HOH HOH 315 A HOH 21 4 HOH HOH 316 A HOH 22 4 HOH HOH 317 A HOH 23 4 HOH HOH 318 A HOH 24 4 HOH HOH 319 A HOH 25 4 HOH HOH 320 A HOH 26 4 HOH HOH 321 A HOH 27 4 HOH HOH 322 A HOH 28 4 HOH HOH 323 A HOH 29 4 HOH HOH 324 A HOH 30 4 HOH HOH 325 A HOH 31 4 HOH HOH 326 A HOH 32 4 HOH HOH 327 A HOH 33 4 HOH HOH 328 A HOH 34 4 HOH HOH 329 A HOH 35 4 HOH HOH 330 A HOH 36 4 HOH HOH 331 A HOH 37 4 HOH HOH 332 A HOH 38 4 HOH HOH 333 A HOH 39 4 HOH HOH 334 A HOH 40 4 HOH HOH 335 A HOH 41 4 HOH HOH 336 A HOH 42 4 HOH HOH 337 A HOH 43 4 HOH HOH 338 A HOH 44 4 HOH HOH 339 A HOH 45 4 HOH HOH 340 A HOH 46 4 HOH HOH 341 A HOH 47 4 HOH HOH 342 A HOH 48 4 HOH HOH 343 A HOH 49 4 HOH HOH 344 A HOH 50 4 HOH HOH 345 A HOH 51 4 HOH HOH 346 A HOH 52 4 HOH HOH 347 A HOH 53 4 HOH HOH 348 A HOH 54 4 HOH HOH 349 A HOH 55 4 HOH HOH 350 A HOH 56 4 HOH HOH 351 A HOH 57 4 HOH HOH 352 A HOH 58 4 HOH HOH 353 A HOH 59 4 HOH HOH 354 A HOH 60 4 HOH HOH 355 A HOH 61 4 HOH HOH 356 A HOH 62 4 HOH HOH 357 A HOH 63 4 HOH HOH 358 A HOH 64 4 HOH HOH 359 A HOH 65 4 HOH HOH 360 A HOH 66 4 HOH HOH 361 A HOH 67 4 HOH HOH 362 A HOH 68 4 HOH HOH 363 A HOH 69 4 HOH HOH 364 A HOH 70 4 HOH HOH 365 A HOH 71 4 HOH HOH 366 A HOH 72 4 HOH HOH 367 A HOH 73 4 HOH HOH 368 A HOH 74 4 HOH HOH 369 A HOH 75 4 HOH HOH 370 A HOH 76 4 HOH HOH 371 A HOH 77 4 HOH HOH 372 A HOH 78 4 HOH HOH 373 A HOH 79 4 HOH HOH 374 A HOH 80 4 HOH HOH 375 A HOH 81 4 HOH HOH 376 A HOH 82 4 HOH HOH 377 A n 1 1 A PRO 2 n 2 PRO 2 A GLU 3 n 3 GLU 3 A GLY 4 n 4 GLY 4 A PRO 5 n 5 PRO 5 A GLU 6 n 6 GLU 6 A VAL 7 n 7 VAL 7 A ALA 8 n 8 ALA 8 A LEU 9 n 9 LEU 9 A THR 10 n 10 THR 10 A ALA 11 n 11 ALA 11 A ASP 12 n 12 ASP 12 A ILE 13 n 13 ILE 13 A LEU 14 n 14 LEU 14 A GLU 15 n 15 GLU 15 A LYS 16 n 16 LYS 16 A TYR 17 n 17 TYR 17 A PHE 18 n 18 PHE 18 A LYS 19 n 19 LYS 19 A GLY 20 n 20 GLY 20 A LYS 21 n 21 LYS 21 A THR 22 n 22 THR 22 A LEU 23 n 23 LEU 23 A GLU 24 n 24 GLU 24 A TYR 25 n 25 TYR 25 A ILE 26 n 26 ILE 26 A ASP 27 n 27 ASP 27 A PHE 28 n 28 PHE 28 A ILE 29 n 29 ILE 29 A SER 30 n 30 SER 30 A GLY 31 n 31 GLY 31 A ARG 32 n 32 ARG 32 A TYR 33 n 33 TYR 33 A SER 34 n 34 SER 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A GLU 37 n 37 GLU 37 A PRO 38 n 38 PRO 38 A GLU 39 n 39 GLU 39 A GLY 40 n 40 GLY 40 A TYR 41 n 41 TYR 41 A ASP 42 n 42 ASP 42 A ASP 43 n 43 ASP 43 A PHE 44 n 44 PHE 44 A ILE 45 n 45 ILE 45 A ALA 46 n 46 ALA 46 A ASN 47 n 47 ASN 47 A LEU 48 n 48 LEU 48 A PRO 49 n 49 PRO 49 A LEU 50 n 50 LEU 50 A LYS 51 n 51 LYS 51 A VAL 52 n 52 VAL 52 A SER 53 n 53 SER 53 A ASN 54 n 54 ASN 54 A VAL 55 n 55 VAL 55 A ASP 56 n 56 ASP 56 A THR 57 n 57 THR 57 A LYS 58 n 58 LYS 58 A GLY 59 n 59 GLY 59 A LYS 60 n 60 LYS 60 A PHE 61 n 61 PHE 61 A LEU 62 n 62 LEU 62 A TRP 63 n 63 TRP 63 A PHE 64 n 64 PHE 64 A GLU 65 n 65 GLU 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASP 68 n 68 ASP 68 A PRO 69 n 69 PRO 69 A ASN 70 n 70 ASN 70 A ASP 71 n 71 ASP 71 A LYS 72 n 72 LYS 72 A SER 73 n 73 SER 73 A ASN 74 n 74 ASN 74 A LYS 75 n 75 LYS 75 A TRP 76 n 76 TRP 76 A TYR 77 n 77 TYR 77 A ILE 78 n 78 ILE 78 A TRP 79 n 79 TRP 79 A ASN 80 n 80 ASN 80 A THR 81 n 81 THR 81 A PHE 82 n 82 PHE 82 A GLY 83 n 83 GLY 83 A LEU 84 n 84 LEU 84 A THR 85 n 85 THR 85 A GLY 86 n 86 GLY 86 A MET 87 n 87 MET 87 A TRP 88 n 88 TRP 88 A SER 89 n 89 SER 89 A LEU 90 n 90 LEU 90 A PHE 91 n 91 PHE 91 A GLU 92 n 92 GLU 92 A ALA 93 n 93 ALA 93 A LYS 94 n 94 LYS 94 A TYR 95 n 95 TYR 95 A THR 96 n 96 THR 96 A ARG 97 n 97 ARG 97 A ALA 98 n 98 ALA 98 A VAL 99 n 99 VAL 99 A LEU 100 n 100 LEU 100 A SER 101 n 101 SER 101 A PHE 102 n 102 PHE 102 A ASP 103 n 103 ASP 103 A ASN 104 n 104 ASN 104 A GLU 105 n 105 GLU 105 A LEU 106 n 106 LEU 106 A MET 107 n 107 MET 107 A ALA 108 n 108 ALA 108 A TYR 109 n 109 TYR 109 A PHE 110 n 110 PHE 110 A SER 111 n 111 SER 111 A ASP 112 n 112 ASP 112 A MET 113 n 113 MET 113 A ARG 114 n 114 ARG 114 A ASN 115 n 115 ASN 115 A PHE 116 n 116 PHE 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A PHE 119 n 119 PHE 119 A LYS 120 n 120 LYS 120 A PHE 121 n 121 PHE 121 A SER 122 n 122 SER 122 A ASN 123 n 123 ASN 123 A SER 124 n 124 SER 124 A GLU 125 n 125 GLU 125 A LYS 126 n 126 LYS 126 A GLU 127 n 127 GLU 127 A LEU 128 n 128 LEU 128 A LYS 129 n 129 LYS 129 A ARG 130 n 130 ARG 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A GLU 134 n 134 GLU 134 A LEU 135 n 135 LEU 135 A GLY 136 n 136 GLY 136 A PRO 137 n 137 PRO 137 A ASP 138 n 138 ASP 138 A PHE 139 n 139 PHE 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A ASN 142 n 142 ASN 142 A ASP 143 n 143 ASP 143 A ASP 144 n 144 ASP 144 A ILE 145 n 145 ILE 145 A ASP 146 n 146 ASP 146 A ILE 147 n 147 ILE 147 A SER 148 n 148 SER 148 A LYS 149 n 149 LYS 149 A ILE 150 n 150 ILE 150 A LYS 151 n 151 LYS 151 A LYS 152 n 152 LYS 152 A TYR 153 n 153 TYR 153 A LYS 154 n 154 LYS 154 A GLN 155 n 155 GLN 155 A PRO 156 n 156 PRO 156 A ILE 157 n 157 ILE 157 A VAL 158 n 158 VAL 158 A ALA 159 n 159 ALA 159 A LEU 160 n 160 LEU 160 A LEU 161 n 161 LEU 161 A MET 162 n 162 MET 162 A ASP 163 n 163 ASP 163 A GLN 164 n 164 GLN 164 A LYS 165 n 165 LYS 165 A LYS 166 n 166 LYS 166 A ILE 167 n 167 ILE 167 A GLY 168 n 168 GLY 168 A SER 169 n 169 SER 169 A GLY 170 n 170 GLY 170 A LEU 171 n 171 LEU 171 A GLY 172 n 172 GLY 172 A ASN 173 n 173 ASN 173 A TYR 174 n 174 TYR 174 A LEU 175 n 175 LEU 175 A VAL 176 n 176 VAL 176 A ALA 177 n 177 ALA 177 A GLU 178 n 178 GLU 178 A ILE 179 n 179 ILE 179 A LEU 180 n 180 LEU 180 A TYR 181 n 181 TYR 181 A ARG 182 n 182 ARG 182 A ALA 183 n 183 ALA 183 A LYS 184 n 184 LYS 184 A ILE 185 n 185 ILE 185 A ASP 186 n 186 ASP 186 A PRO 187 n 187 PRO 187 A HIS 188 n 188 HIS 188 A LYS 189 n 189 LYS 189 A LEU 190 n 190 LEU 190 A GLY 191 n 191 GLY 191 A SER 192 n 192 SER 192 A ASN 193 n 193 ASN 193 A LEU 194 n 194 LEU 194 A THR 195 n 195 THR 195 A ASP 196 n 196 ASP 196 A GLN 197 n 197 GLN 197 A GLU 198 n 198 GLU 198 A ILE 199 n 199 ILE 199 A GLU 200 n 200 GLU 200 A ASN 201 n 201 ASN 201 A LEU 202 n 202 LEU 202 A TRP 203 n 203 TRP 203 A TYR 204 n 204 TYR 204 A TRP 205 n 205 TRP 205 A ILE 206 n 206 ILE 206 A LYS 207 n 207 LYS 207 A TYR 208 n 208 TYR 208 A GLU 209 n 209 GLU 209 A THR 210 n 210 THR 210 A LYS 211 n 211 LYS 211 A LEU 212 n 212 LEU 212 A ALA 213 n 213 ALA 213 A TYR 214 n 214 TYR 214 A ASP 215 n 215 ASP 215 A SER 216 n 216 SER 216 A ASN 217 n 217 ASN 217 A HIS 218 n 218 HIS 218 A ILE 219 n 219 ILE 219 A GLY 220 n 220 GLY 220 A TYR 221 n 221 TYR 221 A MET 222 n 222 MET 222 A VAL 223 n 223 VAL 223 A ASN 224 n 224 ASN 224 A LEU 225 n 225 LEU 225 A GLU 226 n 226 GLU 226 A ASN 227 n 227 ASN 227 A GLU 228 n 228 GLU 228 A SER 229 n 229 SER 229 A SER 230 n 230 SER 230 A LYS 231 n 231 LYS 231 A ILE 232 n 232 ILE 232 A GLY 233 n 233 GLY 233 A ARG 234 n 234 ARG 234 A LYS 235 n 235 LYS 235 A ASN 236 n 236 ASN 236 A TYR 237 n 237 TYR 237 A HIS 238 n 238 HIS 238 A PRO 239 n 239 PRO 239 A ASN 240 n 240 ASN 240 A ILE 241 n 241 ILE 241 A HIS 242 n 242 HIS 242 A PRO 243 n 243 PRO 243 A THR 244 n 244 THR 244 A GLU 245 n 245 GLU 245 A LYS 246 n 246 LYS 246 A GLU 247 n 247 GLU 247 A PHE 248 n 248 PHE 248 A ASP 249 n 249 ASP 249 A PHE 250 n 250 PHE 250 A LEU 251 n 251 LEU 251 A VAL 252 n 252 VAL 252 A TYR 253 n 253 TYR 253 A ARG 254 n 254 ARG 254 A LYS 255 n 255 LYS 255 A LYS 256 n 256 LYS 256 A LYS 257 n 257 LYS 257 A ASP 258 n 258 ASP 258 A PRO 259 n 259 PRO 259 A ASN 260 n 260 ASN 260 A GLY 261 n 261 GLY 261 A ASN 262 n 262 ASN 262 A LYS 263 n 263 LYS 263 A VAL 264 n 264 VAL 264 A ILE 265 n 265 ILE 265 A ALA 266 n 266 ALA 266 A ASP 267 n 267 ASP 267 A LYS 268 n 268 LYS 268 A ILE 269 n 269 ILE 269 A ILE 270 n 270 ILE 270 A n 271 271 A n 272 272 A n 273 273 A n 274 274 A n 275 275 A n 276 276 A ARG 277 n 277 ARG 277 A THR 278 n 278 THR 278 A THR 279 n 279 THR 279 A TYR 280 n 280 TYR 280 A TRP 281 n 281 TRP 281 A ALA 282 n 282 ALA 282 A PRO 283 n 283 PRO 283 A ALA 284 n 284 ALA 284 A ILE 285 n 285 ILE 285 A GLN 286 n 286 GLN 286 A LYS 287 n 287 LYS 287 A LEU 288 n 288 LEU 288 A GLU 289 n 289 GLU 289 A n 290 290 A n 291 291 A n 292 292 A n 293 293 A n 294 294 A n 295 295 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 89 A N SER 89 A O TYR 109 A O TYR 109 A O ALA 108 A O ALA 108 A N LEU 100 A N LEU 100 A O SER 101 A O SER 101 A N TYR 25 A N TYR 25 A N LEU 23 A N LEU 23 A O LEU 50 A O LEU 50 A N SER 53 A N SER 53 A O GLU 65 A O GLU 65 A N LEU 66 A N LEU 66 A O TRP 76 A O TRP 76 A N TRP 79 A N TRP 79 A O LYS 120 A O LYS 120 1 A MET 1 A MET 1 1 Y 1 A GLY 271 A GLY 271 1 Y 1 A SER 272 A SER 272 1 Y 1 A GLY 273 A GLY 273 1 Y 1 A LYS 274 A LYS 274 1 Y 1 A ASN 275 A ASN 275 1 Y 1 A LYS 276 A LYS 276 1 Y 1 A HIS 290 A HIS 290 1 Y 1 A HIS 291 A HIS 291 1 Y 1 A HIS 292 A HIS 292 1 Y 1 A HIS 293 A HIS 293 1 Y 1 A HIS 294 A HIS 294 1 Y 1 A HIS 295 A HIS 295 1 Y 1 A GLU 37 -38.86 156.34 1 A LYS 72 -66.74 0.31 1 A ASP 112 -165.23 79.71 1 A LYS 120 -170.42 133.51 1 A ASP 144 -153.81 48.26 1 A ASP 146 -105.31 79.37 1 A LYS 149 -59.47 3.17 1 A LYS 154 -92.92 49.45 1 A MET 222 81.23 -2.06 1 A PRO 239 -59.68 -1.83 1 A ASN 260 -66.20 10.46 1 A ALA 266 -90.80 49.88 protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top gol_xplor_param gol_xplor_top 106.95 54.731 21.32 0.653 0.000 0.000 0.653 0.000 -1.307 0.268 0.209 2.600 15.000 1256 12144 10.300 99.900 1.00 0.80 random 1 0.00 MIR Engh & Huber 49.071 0.43 0.33 5.00 0.49 0.39 2.600 15.000 82 2442 23 0 2337 0.007 1.335 1.510 1.500 1.876 2.000 2.618 2.000 2.953 2.500 0.393 0.031 0.326 2.72 1507 99.9 66.5 2.6 15 3A42 12173 0.059 1 44.4 11.8 100 0.27 2.60 2.69 4.8 1209 1 100 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE program phasing Thomas C. Terwilliger terwilliger@lanl.gov http://www.solve.lanl.gov/ RESOLVE program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package data extraction PDB help@deposit.rcsb.org June 11, 2008 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.005 data collection MAR345dtb Crystal structure of MvNei1 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N A GLU 3 A GLU 3 HELX_P A LYS 19 A LYS 19 1 1 17 A GLY 31 A GLY 31 HELX_P A SER 36 A SER 36 1 2 6 A GLY 40 A GLY 40 HELX_P A ALA 46 A ALA 46 1 3 7 A GLU 125 A GLU 125 HELX_P A ASN 133 A ASN 133 1 4 9 A ASP 146 A ASP 146 HELX_P A LYS 151 A LYS 151 5 5 6 A PRO 156 A PRO 156 HELX_P A ASP 163 A ASP 163 1 6 8 A GLY 172 A GLY 172 HELX_P A LYS 184 A LYS 184 1 7 13 A LEU 190 A LEU 190 HELX_P A LEU 194 A LEU 194 5 8 5 A THR 195 A THR 195 HELX_P A SER 216 A SER 216 1 9 22 A MET 222 A MET 222 HELX_P A ASN 224 A ASN 224 5 10 3 A LEU 225 A LEU 225 HELX_P A SER 230 A SER 230 1 11 6 HYDROLASE helix two turns helix, zinc-less finger, HYDROLASE, DNA damage, DNA repair, DNA-binding, Glycosidase, Lyase, Multifunctional enzyme A LEU 48 A LEU 48 1 A PRO 49 A PRO 49 0.40 FPG_MIMIV UNP 1 1 Q5UQ00 MPEGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWN TFGLTGMWSLFEAKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFLKNDDIDISKIKKYKQPIVAL LMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPN IHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAPAIQK 1 287 3A42 1 287 Q5UQ00 A 1 1 287 1 expression tag LEU 288 3A42 A Q5UQ00 UNP 288 1 expression tag GLU 289 3A42 A Q5UQ00 UNP 289 1 expression tag HIS 290 3A42 A Q5UQ00 UNP 290 1 expression tag HIS 291 3A42 A Q5UQ00 UNP 291 1 expression tag HIS 292 3A42 A Q5UQ00 UNP 292 1 expression tag HIS 293 3A42 A Q5UQ00 UNP 293 1 expression tag HIS 294 3A42 A Q5UQ00 UNP 294 1 expression tag HIS 295 3A42 A Q5UQ00 UNP 295 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 86 A GLY 86 A SER 89 A SER 89 A MET 107 A MET 107 A ASP 112 A ASP 112 A THR 96 A THR 96 A PHE 102 A PHE 102 A THR 22 A THR 22 A PHE 28 A PHE 28 A LEU 50 A LEU 50 A LYS 58 A LYS 58 A PHE 61 A PHE 61 A PHE 67 A PHE 67 A LYS 75 A LYS 75 A THR 81 A THR 81 A THR 118 A THR 118 A SER 122 A SER 122 BINDING SITE FOR RESIDUE GOL A 401 A GOL 401 Software 5 BINDING SITE FOR RESIDUE GOL A 402 A GOL 402 Software 3 BINDING SITE FOR RESIDUE GOL A 403 A GOL 403 Software 3 BINDING SITE FOR RESIDUE SO4 A 504 A SO4 504 Software 5 A LYS 16 A LYS 16 5 1_555 A TYR 17 A TYR 17 5 1_555 A LYS 94 A LYS 94 5 4_664 A TYR 95 A TYR 95 5 4_664 A LYS 231 A LYS 231 5 1_555 A SER 124 A SER 124 3 1_555 A GLU 125 A GLU 125 3 1_555 A LYS 126 A LYS 126 3 1_555 A ASN 201 A ASN 201 3 1_555 A TYR 204 A TYR 204 3 1_555 A TRP 205 A TRP 205 3 1_555 A TRP 79 A TRP 79 5 1_555 A LYS 120 A LYS 120 5 1_555 A ARG 130 A ARG 130 5 1_555 A LYS 131 A LYS 131 5 1_555 A HOH 341 F HOH 5 1_555 170 P 65