0.029842
0.000000
0.000000
0.000000
0.015591
0.000000
0.000000
0.000000
0.013763
0.00000
0.00000
0.00000
Kuwada, T.
Hasegawa, T.
Takagi, T.
Shishikura, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
33.510
64.140
72.660
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C O
28.010
CARBON MONOXIDE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
C
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
C
Y
160
N
C
Y
161
N
C
Y
162
N
C
Y
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
Y
177
N
N
N
178
N
N
Y
179
N
N
N
180
N
N
N
181
N
FE
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
Y
219
N
C
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
S
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
S
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
R
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
trip
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
Y
142
N
doub
Y
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
Y
174
N
sing
Y
175
N
sing
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
Y
223
N
sing
Y
224
N
doub
Y
225
N
doub
N
226
N
sing
Y
227
N
sing
N
228
N
sing
Y
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
66
258
267
10.1107/S0907444909055760
20179337
pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera)
2010
10.2210/pdb3a5g/pdb
pdb_00003a5g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2008-01-30
RIGAKU RAXIS IV++
confocal
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU ULTRAX 18
17219.344
Hemoglobin V
1
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
1
syn
non-polymer
28.010
CARBON MONOXIDE
1
syn
non-polymer
18.015
water
219
nat
water
no
no
AFVGLSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKN
VGNDKGFQKVIADMSGPHVARPITHGSYNDLRGVIYDSMHLDSTHGAAWNKMMDNFFYVFYECLDGRCSQFS
AFVGLSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKN
VGNDKGFQKVIADMSGPHVARPITHGSYNDLRGVIYDSMHLDSTHGAAWNKMMDNFFYVFYECLDGRCSQFS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
28383
Tokunagayusurika akamusi
larval hemolymph
1
2.27
45.75
VAPOR DIFFUSION, HANGING DROP
7.0
PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-02-09
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The sama protein in a different pH condition.
The sama protein in a different pH condition.
The sama protein in a different pH condition.
PDBJ
Y
PDBJ
2009-08-06
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
CMO
CARBON MONOXIDE
HOH
water
1X3K
PDB
experimental model
HEM
1
2
HEM
HEM
153
A
CMO
2
3
CMO
CMO
154
A
HOH
155
4
HOH
HOH
155
A
HOH
156
4
HOH
HOH
156
A
HOH
157
4
HOH
HOH
157
A
HOH
158
4
HOH
HOH
158
A
HOH
159
4
HOH
HOH
159
A
HOH
160
4
HOH
HOH
160
A
HOH
161
4
HOH
HOH
161
A
HOH
162
4
HOH
HOH
162
A
HOH
163
4
HOH
HOH
163
A
HOH
164
4
HOH
HOH
164
A
HOH
165
4
HOH
HOH
165
A
HOH
166
4
HOH
HOH
166
A
HOH
167
4
HOH
HOH
167
A
HOH
168
4
HOH
HOH
168
A
HOH
169
4
HOH
HOH
169
A
HOH
170
4
HOH
HOH
170
A
HOH
171
4
HOH
HOH
171
A
HOH
172
4
HOH
HOH
172
A
HOH
173
4
HOH
HOH
173
A
HOH
174
4
HOH
HOH
174
A
HOH
175
4
HOH
HOH
175
A
HOH
176
4
HOH
HOH
176
A
HOH
177
4
HOH
HOH
177
A
HOH
178
4
HOH
HOH
178
A
HOH
179
4
HOH
HOH
179
A
HOH
180
4
HOH
HOH
180
A
HOH
181
4
HOH
HOH
181
A
HOH
182
4
HOH
HOH
182
A
HOH
183
4
HOH
HOH
183
A
HOH
184
4
HOH
HOH
184
A
HOH
185
4
HOH
HOH
185
A
HOH
186
4
HOH
HOH
186
A
HOH
187
4
HOH
HOH
187
A
HOH
188
4
HOH
HOH
188
A
HOH
189
4
HOH
HOH
189
A
HOH
190
4
HOH
HOH
190
A
HOH
191
4
HOH
HOH
191
A
HOH
192
4
HOH
HOH
192
A
HOH
193
4
HOH
HOH
193
A
HOH
194
4
HOH
HOH
194
A
HOH
195
4
HOH
HOH
195
A
HOH
196
4
HOH
HOH
196
A
HOH
197
4
HOH
HOH
197
A
HOH
198
4
HOH
HOH
198
A
HOH
199
4
HOH
HOH
199
A
HOH
200
4
HOH
HOH
200
A
HOH
201
4
HOH
HOH
201
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
216
4
HOH
HOH
216
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
1
4
HOH
HOH
220
A
HOH
2
4
HOH
HOH
221
A
HOH
3
4
HOH
HOH
222
A
HOH
4
4
HOH
HOH
223
A
HOH
5
4
HOH
HOH
224
A
HOH
6
4
HOH
HOH
225
A
HOH
7
4
HOH
HOH
226
A
HOH
8
4
HOH
HOH
227
A
HOH
9
4
HOH
HOH
228
A
HOH
10
4
HOH
HOH
229
A
HOH
11
4
HOH
HOH
230
A
HOH
12
4
HOH
HOH
231
A
HOH
13
4
HOH
HOH
232
A
HOH
14
4
HOH
HOH
233
A
HOH
15
4
HOH
HOH
234
A
HOH
16
4
HOH
HOH
235
A
HOH
17
4
HOH
HOH
236
A
HOH
18
4
HOH
HOH
237
A
HOH
19
4
HOH
HOH
238
A
HOH
20
4
HOH
HOH
239
A
HOH
21
4
HOH
HOH
240
A
HOH
22
4
HOH
HOH
241
A
HOH
23
4
HOH
HOH
242
A
HOH
24
4
HOH
HOH
243
A
HOH
25
4
HOH
HOH
244
A
HOH
26
4
HOH
HOH
245
A
HOH
27
4
HOH
HOH
246
A
HOH
28
4
HOH
HOH
247
A
HOH
29
4
HOH
HOH
248
A
HOH
30
4
HOH
HOH
249
A
HOH
31
4
HOH
HOH
250
A
HOH
32
4
HOH
HOH
251
A
HOH
33
4
HOH
HOH
252
A
HOH
34
4
HOH
HOH
253
A
HOH
35
4
HOH
HOH
254
A
HOH
36
4
HOH
HOH
255
A
HOH
37
4
HOH
HOH
256
A
HOH
38
4
HOH
HOH
257
A
HOH
39
4
HOH
HOH
258
A
HOH
40
4
HOH
HOH
259
A
HOH
41
4
HOH
HOH
260
A
HOH
42
4
HOH
HOH
261
A
HOH
43
4
HOH
HOH
262
A
HOH
44
4
HOH
HOH
263
A
HOH
45
4
HOH
HOH
264
A
HOH
46
4
HOH
HOH
265
A
HOH
47
4
HOH
HOH
266
A
HOH
48
4
HOH
HOH
267
A
HOH
49
4
HOH
HOH
268
A
HOH
50
4
HOH
HOH
269
A
HOH
51
4
HOH
HOH
270
A
HOH
52
4
HOH
HOH
271
A
HOH
53
4
HOH
HOH
272
A
HOH
54
4
HOH
HOH
273
A
HOH
55
4
HOH
HOH
274
A
HOH
56
4
HOH
HOH
275
A
HOH
57
4
HOH
HOH
276
A
HOH
58
4
HOH
HOH
277
A
HOH
59
4
HOH
HOH
278
A
HOH
60
4
HOH
HOH
279
A
HOH
61
4
HOH
HOH
280
A
HOH
62
4
HOH
HOH
281
A
HOH
63
4
HOH
HOH
282
A
HOH
64
4
HOH
HOH
283
A
HOH
65
4
HOH
HOH
284
A
HOH
66
4
HOH
HOH
285
A
HOH
67
4
HOH
HOH
286
A
HOH
68
4
HOH
HOH
287
A
HOH
69
4
HOH
HOH
288
A
HOH
70
4
HOH
HOH
289
A
HOH
71
4
HOH
HOH
290
A
HOH
72
4
HOH
HOH
291
A
HOH
73
4
HOH
HOH
292
A
HOH
74
4
HOH
HOH
293
A
HOH
75
4
HOH
HOH
294
A
HOH
76
4
HOH
HOH
295
A
HOH
77
4
HOH
HOH
296
A
HOH
78
4
HOH
HOH
297
A
HOH
79
4
HOH
HOH
298
A
HOH
80
4
HOH
HOH
299
A
HOH
81
4
HOH
HOH
300
A
HOH
82
4
HOH
HOH
301
A
HOH
83
4
HOH
HOH
302
A
HOH
84
4
HOH
HOH
303
A
HOH
85
4
HOH
HOH
304
A
HOH
86
4
HOH
HOH
305
A
HOH
87
4
HOH
HOH
306
A
HOH
88
4
HOH
HOH
307
A
HOH
89
4
HOH
HOH
308
A
HOH
90
4
HOH
HOH
309
A
HOH
91
4
HOH
HOH
310
A
HOH
92
4
HOH
HOH
311
A
HOH
93
4
HOH
HOH
312
A
HOH
94
4
HOH
HOH
313
A
HOH
95
4
HOH
HOH
314
A
HOH
96
4
HOH
HOH
315
A
HOH
97
4
HOH
HOH
316
A
HOH
98
4
HOH
HOH
317
A
HOH
99
4
HOH
HOH
318
A
HOH
100
4
HOH
HOH
319
A
HOH
101
4
HOH
HOH
320
A
HOH
102
4
HOH
HOH
321
A
HOH
103
4
HOH
HOH
322
A
HOH
104
4
HOH
HOH
323
A
HOH
105
4
HOH
HOH
324
A
HOH
106
4
HOH
HOH
325
A
HOH
107
4
HOH
HOH
326
A
HOH
108
4
HOH
HOH
327
A
HOH
109
4
HOH
HOH
328
A
HOH
110
4
HOH
HOH
329
A
HOH
111
4
HOH
HOH
330
A
HOH
112
4
HOH
HOH
331
A
HOH
113
4
HOH
HOH
332
A
HOH
114
4
HOH
HOH
333
A
HOH
115
4
HOH
HOH
334
A
HOH
116
4
HOH
HOH
335
A
HOH
117
4
HOH
HOH
336
A
HOH
118
4
HOH
HOH
337
A
HOH
119
4
HOH
HOH
338
A
HOH
120
4
HOH
HOH
339
A
HOH
121
4
HOH
HOH
340
A
HOH
122
4
HOH
HOH
341
A
HOH
123
4
HOH
HOH
342
A
HOH
124
4
HOH
HOH
343
A
HOH
125
4
HOH
HOH
344
A
HOH
126
4
HOH
HOH
345
A
HOH
127
4
HOH
HOH
346
A
HOH
128
4
HOH
HOH
347
A
HOH
129
4
HOH
HOH
348
A
HOH
130
4
HOH
HOH
349
A
HOH
131
4
HOH
HOH
350
A
HOH
132
4
HOH
HOH
351
A
HOH
133
4
HOH
HOH
352
A
HOH
134
4
HOH
HOH
353
A
HOH
135
4
HOH
HOH
354
A
HOH
136
4
HOH
HOH
355
A
HOH
137
4
HOH
HOH
356
A
HOH
138
4
HOH
HOH
357
A
HOH
139
4
HOH
HOH
358
A
HOH
140
4
HOH
HOH
359
A
HOH
141
4
HOH
HOH
360
A
HOH
142
4
HOH
HOH
361
A
HOH
143
4
HOH
HOH
362
A
HOH
144
4
HOH
HOH
363
A
HOH
145
4
HOH
HOH
364
A
HOH
146
4
HOH
HOH
365
A
HOH
147
4
HOH
HOH
366
A
HOH
148
4
HOH
HOH
367
A
HOH
149
4
HOH
HOH
368
A
HOH
150
4
HOH
HOH
369
A
HOH
151
4
HOH
HOH
370
A
HOH
152
4
HOH
HOH
371
A
HOH
153
4
HOH
HOH
372
A
HOH
154
4
HOH
HOH
373
A
ALA
1
n
1
ALA
1
A
PHE
2
n
2
PHE
2
A
VAL
3
n
3
VAL
3
A
GLY
4
n
4
GLY
4
A
LEU
5
n
5
LEU
5
A
SER
6
n
6
SER
6
A
ASP
7
n
7
ASP
7
A
SER
8
n
8
SER
8
A
GLU
9
n
9
GLU
9
A
GLU
10
n
10
GLU
10
A
LYS
11
n
11
LYS
11
A
LEU
12
n
12
LEU
12
A
VAL
13
n
13
VAL
13
A
ARG
14
n
14
ARG
14
A
ASP
15
n
15
ASP
15
A
ALA
16
n
16
ALA
16
A
TRP
17
n
17
TRP
17
A
ALA
18
n
18
ALA
18
A
PRO
19
n
19
PRO
19
A
ILE
20
n
20
ILE
20
A
HIS
21
n
21
HIS
21
A
GLY
22
n
22
GLY
22
A
ASP
23
n
23
ASP
23
A
LEU
24
n
24
LEU
24
A
GLN
25
n
25
GLN
25
A
GLY
26
n
26
GLY
26
A
THR
27
n
27
THR
27
A
ALA
28
n
28
ALA
28
A
ASN
29
n
29
ASN
29
A
THR
30
n
30
THR
30
A
VAL
31
n
31
VAL
31
A
PHE
32
n
32
PHE
32
A
TYR
33
n
33
TYR
33
A
ASN
34
n
34
ASN
34
A
TYR
35
n
35
TYR
35
A
LEU
36
n
36
LEU
36
A
LYS
37
n
37
LYS
37
A
LYS
38
n
38
LYS
38
A
TYR
39
n
39
TYR
39
A
PRO
40
n
40
PRO
40
A
SER
41
n
41
SER
41
A
ASN
42
n
42
ASN
42
A
GLN
43
n
43
GLN
43
A
ASP
44
n
44
ASP
44
A
LYS
45
n
45
LYS
45
A
PHE
46
n
46
PHE
46
A
GLU
47
n
47
GLU
47
A
THR
48
n
48
THR
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
GLY
51
n
51
GLY
51
A
HIS
52
n
52
HIS
52
A
PRO
53
n
53
PRO
53
A
LEU
54
n
54
LEU
54
A
ASP
55
n
55
ASP
55
A
GLU
56
n
56
GLU
56
A
VAL
57
n
57
VAL
57
A
LYS
58
n
58
LYS
58
A
ASP
59
n
59
ASP
59
A
THR
60
n
60
THR
60
A
ALA
61
n
61
ALA
61
A
ASN
62
n
62
ASN
62
A
PHE
63
n
63
PHE
63
A
LYS
64
n
64
LYS
64
A
LEU
65
n
65
LEU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
ILE
70
n
70
ILE
70
A
PHE
71
n
71
PHE
71
A
THR
72
n
72
THR
72
A
ILE
73
n
73
ILE
73
A
PHE
74
n
74
PHE
74
A
ASP
75
n
75
ASP
75
A
ASN
76
n
76
ASN
76
A
CYS
77
n
77
CYS
77
A
VAL
78
n
78
VAL
78
A
LYS
79
n
79
LYS
79
A
ASN
80
n
80
ASN
80
A
VAL
81
n
81
VAL
81
A
GLY
82
n
82
GLY
82
A
ASN
83
n
83
ASN
83
A
ASP
84
n
84
ASP
84
A
LYS
85
n
85
LYS
85
A
GLY
86
n
86
GLY
86
A
PHE
87
n
87
PHE
87
A
GLN
88
n
88
GLN
88
A
LYS
89
n
89
LYS
89
A
VAL
90
n
90
VAL
90
A
ILE
91
n
91
ILE
91
A
ALA
92
n
92
ALA
92
A
ASP
93
n
93
ASP
93
A
MET
94
n
94
MET
94
A
SER
95
n
95
SER
95
A
GLY
96
n
96
GLY
96
A
PRO
97
n
97
PRO
97
A
HIS
98
n
98
HIS
98
A
VAL
99
n
99
VAL
99
A
ALA
100
n
100
ALA
100
A
ARG
101
n
101
ARG
101
A
PRO
102
n
102
PRO
102
A
ILE
103
n
103
ILE
103
A
THR
104
n
104
THR
104
A
HIS
105
n
105
HIS
105
A
GLY
106
n
106
GLY
106
A
SER
107
n
107
SER
107
A
TYR
108
n
108
TYR
108
A
ASN
109
n
109
ASN
109
A
ASP
110
n
110
ASP
110
A
LEU
111
n
111
LEU
111
A
ARG
112
n
112
ARG
112
A
GLY
113
n
113
GLY
113
A
VAL
114
n
114
VAL
114
A
ILE
115
n
115
ILE
115
A
TYR
116
n
116
TYR
116
A
ASP
117
n
117
ASP
117
A
SER
118
n
118
SER
118
A
MET
119
n
119
MET
119
A
HIS
120
n
120
HIS
120
A
LEU
121
n
121
LEU
121
A
ASP
122
n
122
ASP
122
A
SER
123
n
123
SER
123
A
THR
124
n
124
THR
124
A
HIS
125
n
125
HIS
125
A
GLY
126
n
126
GLY
126
A
ALA
127
n
127
ALA
127
A
ALA
128
n
128
ALA
128
A
TRP
129
n
129
TRP
129
A
ASN
130
n
130
ASN
130
A
LYS
131
n
131
LYS
131
A
MET
132
n
132
MET
132
A
MET
133
n
133
MET
133
A
ASP
134
n
134
ASP
134
A
ASN
135
n
135
ASN
135
A
PHE
136
n
136
PHE
136
A
PHE
137
n
137
PHE
137
A
TYR
138
n
138
TYR
138
A
VAL
139
n
139
VAL
139
A
PHE
140
n
140
PHE
140
A
TYR
141
n
141
TYR
141
A
GLU
142
n
142
GLU
142
A
CYS
143
n
143
CYS
143
A
LEU
144
n
144
LEU
144
A
ASP
145
n
145
ASP
145
A
GLY
146
n
146
GLY
146
A
ARG
147
n
147
ARG
147
A
CYS
148
n
148
CYS
148
A
SER
149
n
149
SER
149
A
GLN
150
n
150
GLN
150
A
PHE
151
n
151
PHE
151
A
SER
152
n
152
SER
152
A
0.206
0.205
0.008
0.217
739
5.0
author_and_software_defined_assembly
PISA
1
monomeric
A
HIS
98
A
NE2
HIS
98
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
NA
HEM
1_555
86.5
A
HIS
98
A
NE2
HIS
98
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
NB
HEM
1_555
89.5
A
HEM
153
B
NA
HEM
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
NB
HEM
1_555
90.2
A
HIS
98
A
NE2
HIS
98
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
NC
HEM
1_555
91.9
A
HEM
153
B
NA
HEM
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
NC
HEM
1_555
178.2
A
HEM
153
B
NB
HEM
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
NC
HEM
1_555
90.6
A
HIS
98
A
NE2
HIS
98
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
ND
HEM
1_555
86.5
A
HEM
153
B
NA
HEM
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
ND
HEM
1_555
91.3
A
HEM
153
B
NB
HEM
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
ND
HEM
1_555
175.7
A
HEM
153
B
NC
HEM
1_555
A
HEM
153
B
FE
HEM
1_555
A
HEM
153
B
ND
HEM
1_555
87.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CBC
HEM
153
B
CBC
HEM
0
N
1
A
A
FE
C
HEM
CMO
153
154
1.87
1
A
A
NZ
OD1
LYS
ASP
11
15
1.94
1
A
A
OD1
O
ASP
HOH
23
196
2.08
1
A
ALA
100
51.56
15.54
protein_rep.param
protein.top
water_rep.param
water.top
PaV-heme.param
PaV-heme.top
cmo_xplor.param
cmo_xplor.top
23.1
-1.04
0.00
0.00
-2.58
0.00
3.62
0.208
0.008
0.190
0.191
1.81
36.33
734
14863
14782
5.0
99.1
RANDOM
970488.21
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1X3K
FLAT MODEL
46.2757
0.371321
0.23
0.20
5.00
0.22
0.16
1.81
36.33
219
1477
45
0
1213
0.019
1.7
18.8
1.90
3.37
1.50
3.99
2.00
4.04
2.00
5.18
2.50
0.386
0.035
0.319
1.92
122
2295
6
5.0
99.8
23.9
1.81
48.08
3A5G
14864
0.054
1
6.71
99.8
0.229
1.81
1.87
6.1
6.62
99.9
data collection
CrystalClear
refinement
CNX
2005
data reduction
CrystalClear
data scaling
CrystalClear
phasing
CNX
2005
Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH7.0 coordinates)
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
6
A
SER
6
HELX_P
A
GLY
22
A
GLY
22
1
1
17
A
ASP
23
A
ASP
23
HELX_P
A
TYR
39
A
TYR
39
1
2
17
A
PRO
40
A
PRO
40
HELX_P
A
PHE
46
A
PHE
46
5
3
7
A
PRO
53
A
PRO
53
HELX_P
A
LYS
58
A
LYS
58
1
4
6
A
THR
60
A
THR
60
HELX_P
A
ASN
80
A
ASN
80
1
5
21
A
ASN
83
A
ASN
83
HELX_P
A
GLY
96
A
GLY
96
1
6
14
A
THR
104
A
THR
104
HELX_P
A
HIS
120
A
HIS
120
1
7
17
A
ASP
122
A
ASP
122
HELX_P
A
ASP
145
A
ASP
145
1
8
24
disulf
2.039
A
CYS
143
A
SG
CYS
143
1_555
A
CYS
148
A
SG
CYS
148
1_555
metalc
2.198
A
HIS
98
A
NE2
HIS
98
1_555
A
HEM
153
B
FE
HEM
1_555
OXYGEN TRANSPORT
hemoglobin, insect, Diptera, Propsilocerus akamusi, midge larva, Heme, Oxygen transport, Transport
Q7M422_9DIPT
UNP
1
1
Q7M422
AFVGLSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKN
VGNDKGFQKVIADMSGPHVARPITHGSYNDLRGVIYDSMHLDSTHGAAWNKMMDNFFYVFYECLDGRCSQFS
1
152
3A5G
1
152
Q7M422
A
1
1
152
BINDING SITE FOR RESIDUE HEM A 153
A
HEM
153
Software
16
BINDING SITE FOR RESIDUE CMO A 154
A
CMO
154
Software
5
A
TYR
35
A
TYR
35
16
1_555
A
LYS
45
A
LYS
45
16
1_555
A
PHE
46
A
PHE
46
16
1_555
A
ARG
69
A
ARG
69
16
1_555
A
ILE
70
A
ILE
70
16
1_555
A
ILE
73
A
ILE
73
16
1_555
A
MET
94
A
MET
94
16
1_555
A
HIS
98
A
HIS
98
16
1_555
A
ILE
103
A
ILE
103
16
1_555
A
LEU
111
A
LEU
111
16
1_555
A
CMO
154
C
CMO
16
1_555
A
HOH
158
D
HOH
16
1_555
A
HOH
208
D
HOH
16
1_555
A
HOH
235
D
HOH
16
1_555
A
HOH
243
D
HOH
16
1_555
A
HOH
342
D
HOH
16
1_555
A
PHE
46
A
PHE
46
5
1_555
A
ILE
66
A
ILE
66
5
1_555
A
ARG
69
A
ARG
69
5
1_555
A
ILE
70
A
ILE
70
5
1_555
A
HEM
153
B
HEM
5
1_555
19
P 21 21 21