0.010188
0.005882
0.000000
0.000000
0.011764
0.000000
0.000000
0.000000
0.012454
0.00000
0.00000
0.00000
Morishita, D.
Takami, M.
Yoshikawa, S.
Katayama, R.
Sato, S.
Kukimoto-Niino, M.
Umehara, T.
Shirouzu, M.
Sekimizu, K.
Yokoyama, S.
Fujita, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
98.156
98.156
80.296
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H17 N6 O12 P3
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
N
N
22
N
P
N
23
N
O
N
24
N
O
N
25
N
O
N
26
N
O
N
27
N
C
N
28
R
C
N
29
N
O
N
30
S
C
N
31
N
O
N
32
R
C
N
33
N
O
N
34
R
C
Y
35
N
N
Y
36
N
C
Y
37
N
N
Y
38
N
C
Y
39
N
C
N
40
N
N
Y
41
N
N
Y
42
N
C
Y
43
N
N
Y
44
N
C
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
MG
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
Y
53
N
sing
Y
54
N
doub
N
55
N
sing
Y
56
N
doub
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
286
2681
2688
10.1074/jbc.M109.092452
21062737
Cell-permeable carboxyl-terminal p27(Kip1) peptide exhibits anti-tumor activity by inhibiting Pim-1 kinase
2011
10.2210/pdb3a99/pdb
pdb_00003a99
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-10-09
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.9700
1.0
BL26B2
SPring-8
0.9700
SYNCHROTRON
SPRING-8 BEAMLINE BL26B2
36483.387
Proto-oncogene serine/threonine-protein kinase pim-1
2.7.11.1
Kinase domain, UNP residues 106-404
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
1
syn
non-polymer
18.015
water
281
nat
water
no
no
MGSSHHHHHHSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR
ISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLE
AVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLY
DMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
MGSSHHHHHHSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR
ISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLE
AVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLY
DMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
BL21 Star (DE3) pLysS
Plasmid
pET28a
1
3.06
59.81
VAPOR DIFFUSION, HANGING DROP
6.5
1 M sodium acetate, 0.1 M imidazole buffer , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2010-11-03
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2009-10-22
REL
REL
MG
MAGNESIUM ION
ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
HOH
water
1YXT
PDB ENTRY 1YXT
PDB
experimental model
MG
401
2
MG
MG
401
A
ANP
501
3
ANP
ANP
501
A
HOH
1
4
HOH
HOH
314
A
HOH
2
4
HOH
HOH
315
A
HOH
3
4
HOH
HOH
316
A
HOH
4
4
HOH
HOH
317
A
HOH
5
4
HOH
HOH
318
A
HOH
6
4
HOH
HOH
319
A
HOH
7
4
HOH
HOH
320
A
HOH
8
4
HOH
HOH
321
A
HOH
9
4
HOH
HOH
322
A
HOH
10
4
HOH
HOH
323
A
HOH
11
4
HOH
HOH
324
A
HOH
12
4
HOH
HOH
325
A
HOH
13
4
HOH
HOH
326
A
HOH
14
4
HOH
HOH
327
A
HOH
15
4
HOH
HOH
328
A
HOH
16
4
HOH
HOH
329
A
HOH
17
4
HOH
HOH
330
A
HOH
18
4
HOH
HOH
331
A
HOH
19
4
HOH
HOH
332
A
HOH
20
4
HOH
HOH
333
A
HOH
21
4
HOH
HOH
334
A
HOH
22
4
HOH
HOH
335
A
HOH
23
4
HOH
HOH
336
A
HOH
24
4
HOH
HOH
337
A
HOH
25
4
HOH
HOH
338
A
HOH
26
4
HOH
HOH
339
A
HOH
27
4
HOH
HOH
340
A
HOH
28
4
HOH
HOH
341
A
HOH
29
4
HOH
HOH
342
A
HOH
30
4
HOH
HOH
343
A
HOH
31
4
HOH
HOH
344
A
HOH
32
4
HOH
HOH
345
A
HOH
33
4
HOH
HOH
346
A
HOH
34
4
HOH
HOH
347
A
HOH
35
4
HOH
HOH
348
A
HOH
36
4
HOH
HOH
349
A
HOH
37
4
HOH
HOH
350
A
HOH
38
4
HOH
HOH
351
A
HOH
39
4
HOH
HOH
352
A
HOH
40
4
HOH
HOH
353
A
HOH
41
4
HOH
HOH
354
A
HOH
42
4
HOH
HOH
355
A
HOH
43
4
HOH
HOH
356
A
HOH
44
4
HOH
HOH
357
A
HOH
45
4
HOH
HOH
358
A
HOH
46
4
HOH
HOH
359
A
HOH
47
4
HOH
HOH
360
A
HOH
48
4
HOH
HOH
361
A
HOH
49
4
HOH
HOH
362
A
HOH
50
4
HOH
HOH
363
A
HOH
51
4
HOH
HOH
364
A
HOH
52
4
HOH
HOH
365
A
HOH
53
4
HOH
HOH
366
A
HOH
54
4
HOH
HOH
367
A
HOH
55
4
HOH
HOH
368
A
HOH
56
4
HOH
HOH
369
A
HOH
57
4
HOH
HOH
370
A
HOH
58
4
HOH
HOH
371
A
HOH
59
4
HOH
HOH
372
A
HOH
60
4
HOH
HOH
373
A
HOH
61
4
HOH
HOH
374
A
HOH
62
4
HOH
HOH
375
A
HOH
63
4
HOH
HOH
376
A
HOH
64
4
HOH
HOH
377
A
HOH
65
4
HOH
HOH
378
A
HOH
66
4
HOH
HOH
379
A
HOH
67
4
HOH
HOH
380
A
HOH
68
4
HOH
HOH
381
A
HOH
69
4
HOH
HOH
382
A
HOH
70
4
HOH
HOH
383
A
HOH
71
4
HOH
HOH
384
A
HOH
72
4
HOH
HOH
385
A
HOH
73
4
HOH
HOH
386
A
HOH
74
4
HOH
HOH
387
A
HOH
75
4
HOH
HOH
388
A
HOH
76
4
HOH
HOH
389
A
HOH
77
4
HOH
HOH
390
A
HOH
78
4
HOH
HOH
391
A
HOH
79
4
HOH
HOH
392
A
HOH
80
4
HOH
HOH
393
A
HOH
81
4
HOH
HOH
394
A
HOH
82
4
HOH
HOH
395
A
HOH
83
4
HOH
HOH
396
A
HOH
84
4
HOH
HOH
397
A
HOH
85
4
HOH
HOH
398
A
HOH
86
4
HOH
HOH
399
A
HOH
87
4
HOH
HOH
400
A
HOH
88
4
HOH
HOH
402
A
HOH
89
4
HOH
HOH
403
A
HOH
90
4
HOH
HOH
404
A
HOH
91
4
HOH
HOH
405
A
HOH
92
4
HOH
HOH
406
A
HOH
93
4
HOH
HOH
407
A
HOH
94
4
HOH
HOH
408
A
HOH
95
4
HOH
HOH
409
A
HOH
96
4
HOH
HOH
410
A
HOH
97
4
HOH
HOH
411
A
HOH
98
4
HOH
HOH
412
A
HOH
99
4
HOH
HOH
413
A
HOH
100
4
HOH
HOH
414
A
HOH
101
4
HOH
HOH
415
A
HOH
102
4
HOH
HOH
416
A
HOH
103
4
HOH
HOH
417
A
HOH
104
4
HOH
HOH
418
A
HOH
105
4
HOH
HOH
419
A
HOH
106
4
HOH
HOH
420
A
HOH
107
4
HOH
HOH
421
A
HOH
108
4
HOH
HOH
422
A
HOH
109
4
HOH
HOH
423
A
HOH
110
4
HOH
HOH
424
A
HOH
111
4
HOH
HOH
425
A
HOH
112
4
HOH
HOH
426
A
HOH
113
4
HOH
HOH
427
A
HOH
114
4
HOH
HOH
428
A
HOH
115
4
HOH
HOH
429
A
HOH
116
4
HOH
HOH
430
A
HOH
117
4
HOH
HOH
431
A
HOH
118
4
HOH
HOH
432
A
HOH
119
4
HOH
HOH
433
A
HOH
120
4
HOH
HOH
434
A
HOH
121
4
HOH
HOH
435
A
HOH
122
4
HOH
HOH
436
A
HOH
123
4
HOH
HOH
437
A
HOH
124
4
HOH
HOH
438
A
HOH
125
4
HOH
HOH
439
A
HOH
126
4
HOH
HOH
440
A
HOH
127
4
HOH
HOH
441
A
HOH
128
4
HOH
HOH
442
A
HOH
129
4
HOH
HOH
443
A
HOH
130
4
HOH
HOH
444
A
HOH
131
4
HOH
HOH
445
A
HOH
132
4
HOH
HOH
446
A
HOH
133
4
HOH
HOH
447
A
HOH
134
4
HOH
HOH
448
A
HOH
135
4
HOH
HOH
449
A
HOH
136
4
HOH
HOH
450
A
HOH
137
4
HOH
HOH
451
A
HOH
138
4
HOH
HOH
452
A
HOH
139
4
HOH
HOH
453
A
HOH
140
4
HOH
HOH
454
A
HOH
141
4
HOH
HOH
455
A
HOH
142
4
HOH
HOH
456
A
HOH
143
4
HOH
HOH
457
A
HOH
144
4
HOH
HOH
458
A
HOH
145
4
HOH
HOH
459
A
HOH
146
4
HOH
HOH
460
A
HOH
147
4
HOH
HOH
461
A
HOH
148
4
HOH
HOH
462
A
HOH
149
4
HOH
HOH
463
A
HOH
150
4
HOH
HOH
464
A
HOH
151
4
HOH
HOH
465
A
HOH
152
4
HOH
HOH
466
A
HOH
153
4
HOH
HOH
467
A
HOH
154
4
HOH
HOH
468
A
HOH
155
4
HOH
HOH
469
A
HOH
156
4
HOH
HOH
470
A
HOH
157
4
HOH
HOH
471
A
HOH
158
4
HOH
HOH
472
A
HOH
159
4
HOH
HOH
473
A
HOH
160
4
HOH
HOH
474
A
HOH
161
4
HOH
HOH
475
A
HOH
162
4
HOH
HOH
476
A
HOH
163
4
HOH
HOH
477
A
HOH
164
4
HOH
HOH
478
A
HOH
165
4
HOH
HOH
479
A
HOH
166
4
HOH
HOH
480
A
HOH
167
4
HOH
HOH
481
A
HOH
168
4
HOH
HOH
482
A
HOH
169
4
HOH
HOH
483
A
HOH
170
4
HOH
HOH
484
A
HOH
171
4
HOH
HOH
485
A
HOH
172
4
HOH
HOH
486
A
HOH
173
4
HOH
HOH
487
A
HOH
174
4
HOH
HOH
488
A
HOH
175
4
HOH
HOH
489
A
HOH
176
4
HOH
HOH
490
A
HOH
177
4
HOH
HOH
491
A
HOH
178
4
HOH
HOH
492
A
HOH
179
4
HOH
HOH
493
A
HOH
180
4
HOH
HOH
494
A
HOH
181
4
HOH
HOH
495
A
HOH
182
4
HOH
HOH
496
A
HOH
183
4
HOH
HOH
497
A
HOH
184
4
HOH
HOH
498
A
HOH
185
4
HOH
HOH
499
A
HOH
186
4
HOH
HOH
500
A
HOH
187
4
HOH
HOH
502
A
HOH
188
4
HOH
HOH
503
A
HOH
189
4
HOH
HOH
504
A
HOH
190
4
HOH
HOH
505
A
HOH
191
4
HOH
HOH
506
A
HOH
192
4
HOH
HOH
507
A
HOH
193
4
HOH
HOH
508
A
HOH
194
4
HOH
HOH
509
A
HOH
195
4
HOH
HOH
510
A
HOH
196
4
HOH
HOH
511
A
HOH
197
4
HOH
HOH
512
A
HOH
198
4
HOH
HOH
513
A
HOH
199
4
HOH
HOH
514
A
HOH
200
4
HOH
HOH
515
A
HOH
201
4
HOH
HOH
516
A
HOH
202
4
HOH
HOH
517
A
HOH
203
4
HOH
HOH
518
A
HOH
204
4
HOH
HOH
519
A
HOH
205
4
HOH
HOH
520
A
HOH
206
4
HOH
HOH
521
A
HOH
207
4
HOH
HOH
522
A
HOH
208
4
HOH
HOH
523
A
HOH
209
4
HOH
HOH
524
A
HOH
210
4
HOH
HOH
525
A
HOH
211
4
HOH
HOH
526
A
HOH
212
4
HOH
HOH
527
A
HOH
213
4
HOH
HOH
528
A
HOH
214
4
HOH
HOH
529
A
HOH
215
4
HOH
HOH
530
A
HOH
216
4
HOH
HOH
531
A
HOH
217
4
HOH
HOH
532
A
HOH
218
4
HOH
HOH
533
A
HOH
219
4
HOH
HOH
534
A
HOH
220
4
HOH
HOH
535
A
HOH
221
4
HOH
HOH
536
A
HOH
222
4
HOH
HOH
537
A
HOH
223
4
HOH
HOH
538
A
HOH
224
4
HOH
HOH
539
A
HOH
225
4
HOH
HOH
540
A
HOH
226
4
HOH
HOH
541
A
HOH
227
4
HOH
HOH
542
A
HOH
228
4
HOH
HOH
543
A
HOH
229
4
HOH
HOH
544
A
HOH
230
4
HOH
HOH
545
A
HOH
231
4
HOH
HOH
546
A
HOH
232
4
HOH
HOH
547
A
HOH
233
4
HOH
HOH
548
A
HOH
234
4
HOH
HOH
549
A
HOH
235
4
HOH
HOH
550
A
HOH
236
4
HOH
HOH
551
A
HOH
237
4
HOH
HOH
552
A
HOH
238
4
HOH
HOH
553
A
HOH
239
4
HOH
HOH
554
A
HOH
240
4
HOH
HOH
555
A
HOH
241
4
HOH
HOH
556
A
HOH
242
4
HOH
HOH
557
A
HOH
243
4
HOH
HOH
558
A
HOH
244
4
HOH
HOH
559
A
HOH
245
4
HOH
HOH
560
A
HOH
246
4
HOH
HOH
561
A
HOH
247
4
HOH
HOH
562
A
HOH
248
4
HOH
HOH
563
A
HOH
249
4
HOH
HOH
564
A
HOH
250
4
HOH
HOH
565
A
HOH
251
4
HOH
HOH
566
A
HOH
252
4
HOH
HOH
567
A
HOH
253
4
HOH
HOH
568
A
HOH
254
4
HOH
HOH
569
A
HOH
255
4
HOH
HOH
570
A
HOH
256
4
HOH
HOH
571
A
HOH
257
4
HOH
HOH
572
A
HOH
258
4
HOH
HOH
573
A
HOH
259
4
HOH
HOH
574
A
HOH
260
4
HOH
HOH
575
A
HOH
261
4
HOH
HOH
576
A
HOH
262
4
HOH
HOH
577
A
HOH
263
4
HOH
HOH
578
A
HOH
264
4
HOH
HOH
579
A
HOH
265
4
HOH
HOH
580
A
HOH
266
4
HOH
HOH
581
A
HOH
267
4
HOH
HOH
582
A
HOH
268
4
HOH
HOH
583
A
HOH
269
4
HOH
HOH
584
A
HOH
270
4
HOH
HOH
585
A
HOH
271
4
HOH
HOH
586
A
HOH
272
4
HOH
HOH
587
A
HOH
273
4
HOH
HOH
588
A
HOH
274
4
HOH
HOH
589
A
HOH
275
4
HOH
HOH
590
A
HOH
276
4
HOH
HOH
591
A
HOH
277
4
HOH
HOH
592
A
HOH
278
4
HOH
HOH
593
A
HOH
279
4
HOH
HOH
594
A
HOH
280
4
HOH
HOH
595
A
HOH
281
4
HOH
HOH
596
A
n
1
-6
A
n
2
-5
A
n
3
-4
A
n
4
-3
A
n
5
-2
A
n
6
-1
A
n
7
0
A
n
8
1
A
n
9
2
A
n
10
3
A
n
11
4
A
n
12
5
A
n
13
6
A
n
14
7
A
n
15
8
A
n
16
9
A
n
17
10
A
n
18
11
A
n
19
12
A
n
20
13
A
n
21
14
A
n
22
15
A
n
23
16
A
n
24
17
A
n
25
18
A
n
26
19
A
n
27
20
A
n
28
21
A
n
29
22
A
n
30
23
A
n
31
24
A
n
32
25
A
n
33
26
A
n
34
27
A
n
35
28
A
n
36
29
A
n
37
30
A
n
38
31
A
n
39
32
A
PRO
33
n
40
PRO
33
A
LEU
34
n
41
LEU
34
A
GLU
35
n
42
GLU
35
A
SER
36
n
43
SER
36
A
GLN
37
n
44
GLN
37
A
TYR
38
n
45
TYR
38
A
GLN
39
n
46
GLN
39
A
VAL
40
n
47
VAL
40
A
GLY
41
n
48
GLY
41
A
PRO
42
n
49
PRO
42
A
LEU
43
n
50
LEU
43
A
LEU
44
n
51
LEU
44
A
GLY
45
n
52
GLY
45
A
SER
46
n
53
SER
46
A
GLY
47
n
54
GLY
47
A
GLY
48
n
55
GLY
48
A
PHE
49
n
56
PHE
49
A
GLY
50
n
57
GLY
50
A
SER
51
n
58
SER
51
A
VAL
52
n
59
VAL
52
A
TYR
53
n
60
TYR
53
A
SER
54
n
61
SER
54
A
GLY
55
n
62
GLY
55
A
ILE
56
n
63
ILE
56
A
ARG
57
n
64
ARG
57
A
VAL
58
n
65
VAL
58
A
SER
59
n
66
SER
59
A
ASP
60
n
67
ASP
60
A
ASN
61
n
68
ASN
61
A
LEU
62
n
69
LEU
62
A
PRO
63
n
70
PRO
63
A
VAL
64
n
71
VAL
64
A
ALA
65
n
72
ALA
65
A
ILE
66
n
73
ILE
66
A
LYS
67
n
74
LYS
67
A
HIS
68
n
75
HIS
68
A
VAL
69
n
76
VAL
69
A
GLU
70
n
77
GLU
70
A
LYS
71
n
78
LYS
71
A
ASP
72
n
79
ASP
72
A
ARG
73
n
80
ARG
73
A
ILE
74
n
81
ILE
74
A
SER
75
n
82
SER
75
A
ASP
76
n
83
ASP
76
A
TRP
77
n
84
TRP
77
A
GLY
78
n
85
GLY
78
A
GLU
79
n
86
GLU
79
A
LEU
80
n
87
LEU
80
A
PRO
81
n
88
PRO
81
A
ASN
82
n
89
ASN
82
A
GLY
83
n
90
GLY
83
A
THR
84
n
91
THR
84
A
ARG
85
n
92
ARG
85
A
VAL
86
n
93
VAL
86
A
PRO
87
n
94
PRO
87
A
MET
88
n
95
MET
88
A
GLU
89
n
96
GLU
89
A
VAL
90
n
97
VAL
90
A
VAL
91
n
98
VAL
91
A
LEU
92
n
99
LEU
92
A
LEU
93
n
100
LEU
93
A
LYS
94
n
101
LYS
94
A
LYS
95
n
102
LYS
95
A
VAL
96
n
103
VAL
96
A
SER
97
n
104
SER
97
A
SER
98
n
105
SER
98
A
GLY
99
n
106
GLY
99
A
PHE
100
n
107
PHE
100
A
SER
101
n
108
SER
101
A
GLY
102
n
109
GLY
102
A
VAL
103
n
110
VAL
103
A
ILE
104
n
111
ILE
104
A
ARG
105
n
112
ARG
105
A
LEU
106
n
113
LEU
106
A
LEU
107
n
114
LEU
107
A
ASP
108
n
115
ASP
108
A
TRP
109
n
116
TRP
109
A
PHE
110
n
117
PHE
110
A
GLU
111
n
118
GLU
111
A
ARG
112
n
119
ARG
112
A
PRO
113
n
120
PRO
113
A
ASP
114
n
121
ASP
114
A
SER
115
n
122
SER
115
A
PHE
116
n
123
PHE
116
A
VAL
117
n
124
VAL
117
A
LEU
118
n
125
LEU
118
A
ILE
119
n
126
ILE
119
A
LEU
120
n
127
LEU
120
A
GLU
121
n
128
GLU
121
A
ARG
122
n
129
ARG
122
A
PRO
123
n
130
PRO
123
A
GLU
124
n
131
GLU
124
A
PRO
125
n
132
PRO
125
A
VAL
126
n
133
VAL
126
A
GLN
127
n
134
GLN
127
A
ASP
128
n
135
ASP
128
A
LEU
129
n
136
LEU
129
A
PHE
130
n
137
PHE
130
A
ASP
131
n
138
ASP
131
A
PHE
132
n
139
PHE
132
A
ILE
133
n
140
ILE
133
A
THR
134
n
141
THR
134
A
GLU
135
n
142
GLU
135
A
ARG
136
n
143
ARG
136
A
GLY
137
n
144
GLY
137
A
ALA
138
n
145
ALA
138
A
LEU
139
n
146
LEU
139
A
GLN
140
n
147
GLN
140
A
GLU
141
n
148
GLU
141
A
GLU
142
n
149
GLU
142
A
LEU
143
n
150
LEU
143
A
ALA
144
n
151
ALA
144
A
ARG
145
n
152
ARG
145
A
SER
146
n
153
SER
146
A
PHE
147
n
154
PHE
147
A
PHE
148
n
155
PHE
148
A
TRP
149
n
156
TRP
149
A
GLN
150
n
157
GLN
150
A
VAL
151
n
158
VAL
151
A
LEU
152
n
159
LEU
152
A
GLU
153
n
160
GLU
153
A
ALA
154
n
161
ALA
154
A
VAL
155
n
162
VAL
155
A
ARG
156
n
163
ARG
156
A
HIS
157
n
164
HIS
157
A
CYS
158
n
165
CYS
158
A
HIS
159
n
166
HIS
159
A
ASN
160
n
167
ASN
160
A
CYS
161
n
168
CYS
161
A
GLY
162
n
169
GLY
162
A
VAL
163
n
170
VAL
163
A
LEU
164
n
171
LEU
164
A
HIS
165
n
172
HIS
165
A
ARG
166
n
173
ARG
166
A
ASP
167
n
174
ASP
167
A
ILE
168
n
175
ILE
168
A
LYS
169
n
176
LYS
169
A
ASP
170
n
177
ASP
170
A
GLU
171
n
178
GLU
171
A
ASN
172
n
179
ASN
172
A
ILE
173
n
180
ILE
173
A
LEU
174
n
181
LEU
174
A
ILE
175
n
182
ILE
175
A
ASP
176
n
183
ASP
176
A
LEU
177
n
184
LEU
177
A
ASN
178
n
185
ASN
178
A
ARG
179
n
186
ARG
179
A
GLY
180
n
187
GLY
180
A
GLU
181
n
188
GLU
181
A
LEU
182
n
189
LEU
182
A
LYS
183
n
190
LYS
183
A
LEU
184
n
191
LEU
184
A
ILE
185
n
192
ILE
185
A
ASP
186
n
193
ASP
186
A
PHE
187
n
194
PHE
187
A
GLY
188
n
195
GLY
188
A
SER
189
n
196
SER
189
A
GLY
190
n
197
GLY
190
A
ALA
191
n
198
ALA
191
A
LEU
192
n
199
LEU
192
A
LEU
193
n
200
LEU
193
A
LYS
194
n
201
LYS
194
A
ASP
195
n
202
ASP
195
A
THR
196
n
203
THR
196
A
VAL
197
n
204
VAL
197
A
TYR
198
n
205
TYR
198
A
THR
199
n
206
THR
199
A
ASP
200
n
207
ASP
200
A
PHE
201
n
208
PHE
201
A
ASP
202
n
209
ASP
202
A
GLY
203
n
210
GLY
203
A
THR
204
n
211
THR
204
A
ARG
205
n
212
ARG
205
A
VAL
206
n
213
VAL
206
A
TYR
207
n
214
TYR
207
A
SER
208
n
215
SER
208
A
PRO
209
n
216
PRO
209
A
PRO
210
n
217
PRO
210
A
GLU
211
n
218
GLU
211
A
TRP
212
n
219
TRP
212
A
ILE
213
n
220
ILE
213
A
ARG
214
n
221
ARG
214
A
TYR
215
n
222
TYR
215
A
HIS
216
n
223
HIS
216
A
ARG
217
n
224
ARG
217
A
TYR
218
n
225
TYR
218
A
HIS
219
n
226
HIS
219
A
GLY
220
n
227
GLY
220
A
ARG
221
n
228
ARG
221
A
SER
222
n
229
SER
222
A
ALA
223
n
230
ALA
223
A
ALA
224
n
231
ALA
224
A
VAL
225
n
232
VAL
225
A
TRP
226
n
233
TRP
226
A
SER
227
n
234
SER
227
A
LEU
228
n
235
LEU
228
A
GLY
229
n
236
GLY
229
A
ILE
230
n
237
ILE
230
A
LEU
231
n
238
LEU
231
A
LEU
232
n
239
LEU
232
A
TYR
233
n
240
TYR
233
A
ASP
234
n
241
ASP
234
A
MET
235
n
242
MET
235
A
VAL
236
n
243
VAL
236
A
CYS
237
n
244
CYS
237
A
GLY
238
n
245
GLY
238
A
ASP
239
n
246
ASP
239
A
ILE
240
n
247
ILE
240
A
PRO
241
n
248
PRO
241
A
PHE
242
n
249
PHE
242
A
GLU
243
n
250
GLU
243
A
HIS
244
n
251
HIS
244
A
ASP
245
n
252
ASP
245
A
GLU
246
n
253
GLU
246
A
GLU
247
n
254
GLU
247
A
ILE
248
n
255
ILE
248
A
ILE
249
n
256
ILE
249
A
ARG
250
n
257
ARG
250
A
GLY
251
n
258
GLY
251
A
GLN
252
n
259
GLN
252
A
VAL
253
n
260
VAL
253
A
PHE
254
n
261
PHE
254
A
PHE
255
n
262
PHE
255
A
ARG
256
n
263
ARG
256
A
GLN
257
n
264
GLN
257
A
ARG
258
n
265
ARG
258
A
VAL
259
n
266
VAL
259
A
SER
260
n
267
SER
260
A
SER
261
n
268
SER
261
A
GLU
262
n
269
GLU
262
A
CYS
263
n
270
CYS
263
A
GLN
264
n
271
GLN
264
A
HIS
265
n
272
HIS
265
A
LEU
266
n
273
LEU
266
A
ILE
267
n
274
ILE
267
A
ARG
268
n
275
ARG
268
A
TRP
269
n
276
TRP
269
A
CYS
270
n
277
CYS
270
A
LEU
271
n
278
LEU
271
A
ALA
272
n
279
ALA
272
A
LEU
273
n
280
LEU
273
A
ARG
274
n
281
ARG
274
A
PRO
275
n
282
PRO
275
A
SER
276
n
283
SER
276
A
ASP
277
n
284
ASP
277
A
ARG
278
n
285
ARG
278
A
PRO
279
n
286
PRO
279
A
THR
280
n
287
THR
280
A
PHE
281
n
288
PHE
281
A
GLU
282
n
289
GLU
282
A
GLU
283
n
290
GLU
283
A
ILE
284
n
291
ILE
284
A
GLN
285
n
292
GLN
285
A
ASN
286
n
293
ASN
286
A
HIS
287
n
294
HIS
287
A
PRO
288
n
295
PRO
288
A
TRP
289
n
296
TRP
289
A
MET
290
n
297
MET
290
A
GLN
291
n
298
GLN
291
A
ASP
292
n
299
ASP
292
A
VAL
293
n
300
VAL
293
A
LEU
294
n
301
LEU
294
A
LEU
295
n
302
LEU
295
A
PRO
296
n
303
PRO
296
A
GLN
297
n
304
GLN
297
A
GLU
298
n
305
GLU
298
A
THR
299
n
306
THR
299
A
ALA
300
n
307
ALA
300
A
GLU
301
n
308
GLU
301
A
ILE
302
n
309
ILE
302
A
HIS
303
n
310
HIS
303
A
LEU
304
n
311
LEU
304
A
HIS
305
n
312
HIS
305
A
n
313
306
A
n
314
307
A
n
315
308
A
n
316
309
A
n
317
310
A
n
318
311
A
n
319
312
A
n
320
313
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
186
A
OD2
ASP
193
1_555
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O2B
ANP
1_555
92.8
A
ASP
186
A
OD2
ASP
193
1_555
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O2A
ANP
1_555
90.8
A
ANP
501
C
O2B
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O2A
ANP
1_555
82.6
A
ASP
186
A
OD2
ASP
193
1_555
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O1G
ANP
1_555
174.3
A
ANP
501
C
O2B
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O1G
ANP
1_555
81.7
A
ANP
501
C
O2A
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O1G
ANP
1_555
87.1
A
ASP
186
A
OD2
ASP
193
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
577
D
O
HOH
1_555
93.5
A
ANP
501
C
O2B
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
577
D
O
HOH
1_555
173.4
A
ANP
501
C
O2A
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
577
D
O
HOH
1_555
95.5
A
ANP
501
C
O1G
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
577
D
O
HOH
1_555
91.9
A
ASP
186
A
OD2
ASP
193
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
596
D
O
HOH
1_555
84.1
A
ANP
501
C
O2B
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
596
D
O
HOH
1_555
88.8
A
ANP
501
C
O2A
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
596
D
O
HOH
1_555
169.8
A
ANP
501
C
O1G
ANP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
596
D
O
HOH
1_555
97.1
A
HOH
577
D
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
596
D
O
HOH
1_555
93.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
41
A
N
GLY
48
A
O
SER
54
A
O
SER
61
A
N
TYR
53
A
N
TYR
60
A
O
ILE
66
A
O
ILE
73
A
N
LYS
67
A
N
LYS
74
A
O
LEU
118
A
O
LEU
125
A
O
ILE
119
A
O
ILE
126
A
N
ASP
108
A
N
ASP
115
A
N
GLY
78
A
N
GLY
85
A
O
VAL
86
A
O
VAL
93
A
N
GLN
127
A
N
GLN
134
A
O
ILE
175
A
O
ILE
182
A
N
ASP
176
A
N
ASP
183
A
O
GLU
181
A
O
GLU
188
A
N
LEU
164
A
N
LEU
171
A
O
ALA
191
A
O
ALA
198
1
A
MET
-6
A
MET
1
1
Y
1
A
GLY
-5
A
GLY
2
1
Y
1
A
SER
-4
A
SER
3
1
Y
1
A
SER
-3
A
SER
4
1
Y
1
A
HIS
-2
A
HIS
5
1
Y
1
A
HIS
-1
A
HIS
6
1
Y
1
A
HIS
0
A
HIS
7
1
Y
1
A
HIS
1
A
HIS
8
1
Y
1
A
HIS
2
A
HIS
9
1
Y
1
A
HIS
3
A
HIS
10
1
Y
1
A
SER
4
A
SER
11
1
Y
1
A
SER
5
A
SER
12
1
Y
1
A
GLY
6
A
GLY
13
1
Y
1
A
LEU
7
A
LEU
14
1
Y
1
A
VAL
8
A
VAL
15
1
Y
1
A
PRO
9
A
PRO
16
1
Y
1
A
ARG
10
A
ARG
17
1
Y
1
A
GLY
11
A
GLY
18
1
Y
1
A
SER
12
A
SER
19
1
Y
1
A
HIS
13
A
HIS
20
1
Y
1
A
MET
14
A
MET
21
1
Y
1
A
ALA
15
A
ALA
22
1
Y
1
A
PRO
16
A
PRO
23
1
Y
1
A
CYS
17
A
CYS
24
1
Y
1
A
ASN
18
A
ASN
25
1
Y
1
A
ASP
19
A
ASP
26
1
Y
1
A
LEU
20
A
LEU
27
1
Y
1
A
HIS
21
A
HIS
28
1
Y
1
A
ALA
22
A
ALA
29
1
Y
1
A
THR
23
A
THR
30
1
Y
1
A
LYS
24
A
LYS
31
1
Y
1
A
LEU
25
A
LEU
32
1
Y
1
A
ALA
26
A
ALA
33
1
Y
1
A
PRO
27
A
PRO
34
1
Y
1
A
GLY
28
A
GLY
35
1
Y
1
A
LYS
29
A
LYS
36
1
Y
1
A
GLU
30
A
GLU
37
1
Y
1
A
LYS
31
A
LYS
38
1
Y
1
A
GLU
32
A
GLU
39
1
Y
1
A
SER
306
A
SER
313
1
Y
1
A
LEU
307
A
LEU
314
1
Y
1
A
SER
308
A
SER
315
1
Y
1
A
PRO
309
A
PRO
316
1
Y
1
A
GLY
310
A
GLY
317
1
Y
1
A
PRO
311
A
PRO
318
1
Y
1
A
SER
312
A
SER
319
1
Y
1
A
LYS
313
A
LYS
320
1
Y
1
A
LEU
34
-145.53
-47.21
1
A
ASP
167
-148.19
43.26
1
A
ASP
186
60.85
87.29
protein_rep.param
protein.top
anp_xplor_par2.txt
anp_xplor_top.txt
water_rep.param
water.top
ion.param
ion.top
25.6
1.09
0.79
0.00
1.09
0.00
-2.18
0.206
0.003
0.187
0.187
1.60
32.13
5851
57522
10.2
99.1
RANDOM
1567539.67
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1YXT
FLAT MODEL
52.8156
0.412693
0.19
0.17
5.00
0.12
0.12
1.60
32.13
281
2537
32
0
2224
0.005
1.2
21.9
0.73
1
NONE
1
X-RAY DIFFRACTION
0.248
0.008
0.246
1.70
1005
8396
6
10.7
97.6
22.4
1.6
50
3A99
57557
-3
0.054
1
32.3
6.7
99.3
1.60
1.66
2.76
0.424
97.6
phasing
MOLREP
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
Structure of PIM-1 kinase crystallized in the presence of P27KIP1 Carboxy-terminal peptide
1
N
N
2
N
N
3
N
N
4
N
N
A
ASP
72
A
ASP
79
HELX_P
A
ILE
74
A
ILE
81
5
1
3
A
MET
88
A
MET
95
HELX_P
A
SER
97
A
SER
104
1
2
10
A
LEU
129
A
LEU
136
HELX_P
A
GLY
137
A
GLY
144
1
3
9
A
GLN
140
A
GLN
147
HELX_P
A
CYS
161
A
CYS
168
1
4
22
A
LYS
169
A
LYS
176
HELX_P
A
GLU
171
A
GLU
178
5
5
3
A
THR
204
A
THR
211
HELX_P
A
SER
208
A
SER
215
5
6
5
A
PRO
209
A
PRO
216
HELX_P
A
HIS
216
A
HIS
223
1
7
8
A
HIS
219
A
HIS
226
HELX_P
A
GLY
238
A
GLY
245
1
8
20
A
HIS
244
A
HIS
251
HELX_P
A
GLY
251
A
GLY
258
1
9
8
A
SER
260
A
SER
267
HELX_P
A
LEU
271
A
LEU
278
1
10
12
A
ARG
274
A
ARG
281
HELX_P
A
ARG
278
A
ARG
285
5
11
5
A
THR
280
A
THR
287
HELX_P
A
ASN
286
A
ASN
293
1
12
7
A
HIS
287
A
HIS
294
HELX_P
A
GLN
291
A
GLN
298
5
13
5
A
LEU
295
A
LEU
302
HELX_P
A
LEU
304
A
LEU
311
1
14
10
metalc
2.109
A
ASP
186
A
OD2
ASP
193
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.094
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O2B
ANP
1_555
metalc
2.133
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O2A
ANP
1_555
metalc
2.163
A
MG
401
B
MG
MG
1_555
A
ANP
501
C
O1G
ANP
1_555
metalc
2.166
A
MG
401
B
MG
MG
1_555
A
HOH
577
D
O
HOH
1_555
metalc
2.317
A
MG
401
B
MG
MG
1_555
A
HOH
596
D
O
HOH
1_555
TRANSFERASE
Pim-1, p27Kip1, peptide drug, prostate cancer, TRANSFERASE
A
GLU
124
A
GLU
131
1
A
PRO
125
A
PRO
132
-0.08
PIM1_HUMAN
UNP
1
106
P11309
APCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLK
KVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENIL
IDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVF
FRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
106
404
3A99
15
313
P11309
A
1
22
320
1
expression tag
MET
-6
3A99
A
P11309
UNP
1
1
expression tag
GLY
-5
3A99
A
P11309
UNP
2
1
expression tag
SER
-4
3A99
A
P11309
UNP
3
1
expression tag
SER
-3
3A99
A
P11309
UNP
4
1
expression tag
HIS
-2
3A99
A
P11309
UNP
5
1
expression tag
HIS
-1
3A99
A
P11309
UNP
6
1
expression tag
HIS
0
3A99
A
P11309
UNP
7
1
expression tag
HIS
1
3A99
A
P11309
UNP
8
1
expression tag
HIS
2
3A99
A
P11309
UNP
9
1
expression tag
HIS
3
3A99
A
P11309
UNP
10
1
expression tag
SER
4
3A99
A
P11309
UNP
11
1
expression tag
SER
5
3A99
A
P11309
UNP
12
1
expression tag
GLY
6
3A99
A
P11309
UNP
13
1
expression tag
LEU
7
3A99
A
P11309
UNP
14
1
expression tag
VAL
8
3A99
A
P11309
UNP
15
1
expression tag
PRO
9
3A99
A
P11309
UNP
16
1
expression tag
ARG
10
3A99
A
P11309
UNP
17
1
expression tag
GLY
11
3A99
A
P11309
UNP
18
1
expression tag
SER
12
3A99
A
P11309
UNP
19
1
expression tag
HIS
13
3A99
A
P11309
UNP
20
1
expression tag
MET
14
3A99
A
P11309
UNP
21
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
45
A
LEU
43
A
LEU
50
A
SER
51
A
SER
58
A
ARG
57
A
ARG
64
A
PRO
63
A
PRO
70
A
GLU
70
A
GLU
77
A
SER
115
A
SER
122
A
GLU
121
A
GLU
128
A
LEU
106
A
LEU
113
A
GLU
111
A
GLU
118
A
TRP
77
A
TRP
84
A
GLU
79
A
GLU
86
A
ARG
85
A
ARG
92
A
PRO
87
A
PRO
94
A
VAL
126
A
VAL
133
A
ASP
128
A
ASP
135
A
ILE
173
A
ILE
180
A
ASP
176
A
ASP
183
A
GLU
181
A
GLU
188
A
LEU
184
A
LEU
191
A
VAL
163
A
VAL
170
A
LEU
164
A
LEU
171
A
ALA
191
A
ALA
198
A
LEU
192
A
LEU
199
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
4
BINDING SITE FOR RESIDUE ANP A 501
A
ANP
501
Software
28
A
ASP
186
A
ASP
193
4
1_555
A
ANP
501
C
ANP
4
1_555
A
HOH
577
D
HOH
4
1_555
A
HOH
596
D
HOH
4
1_555
A
LEU
44
A
LEU
51
28
1_555
A
GLY
50
A
GLY
57
28
1_555
A
VAL
52
A
VAL
59
28
1_555
A
ALA
65
A
ALA
72
28
1_555
A
LYS
67
A
LYS
74
28
1_555
A
ILE
104
A
ILE
111
28
1_555
A
GLU
121
A
GLU
128
28
1_555
A
LEU
174
A
LEU
181
28
1_555
A
ASP
186
A
ASP
193
28
1_555
A
HOH
336
D
HOH
28
1_555
A
HOH
338
D
HOH
28
1_555
A
HOH
343
D
HOH
28
1_555
A
HOH
352
D
HOH
28
1_555
A
HOH
356
D
HOH
28
1_555
A
HOH
393
D
HOH
28
1_555
A
HOH
394
D
HOH
28
1_555
A
MG
401
B
MG
28
1_555
A
HOH
422
D
HOH
28
1_555
A
HOH
454
D
HOH
28
1_555
A
HOH
459
D
HOH
28
1_555
A
HOH
462
D
HOH
28
1_555
A
HOH
475
D
HOH
28
1_555
A
HOH
481
D
HOH
28
1_555
A
HOH
489
D
HOH
28
1_555
A
HOH
499
D
HOH
28
1_555
A
HOH
571
D
HOH
28
1_555
A
HOH
572
D
HOH
28
1_555
A
HOH
596
D
HOH
28
1_555
170
P 65