0.005481
0.000000
0.000000
0.000000
0.005481
0.000000
0.000000
0.000000
0.005481
0.00000
0.00000
0.00000
Abe, S.
Hikage, T.
Watanabe, Y.
Kitagawa, S.
Ueno, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
96
90.00
90.00
90.00
182.433
182.433
182.433
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Pd 2
106.420
PALLADIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H5 Pd
147.492
Palladium(II) allyl complex
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
Y
153
N
C
Y
154
N
N
Y
155
N
C
Y
156
N
C
Y
157
N
N
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
S
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
S
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
PD
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
C
N
286
N
C
N
287
N
PD
N
288
N
C
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
S
N
326
N
O
N
327
N
O
N
328
N
O
N
329
N
O
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
US
Inorg.Chem.
INOCAJ
0009
0020-1669
49
6967
6973
10.1021/ic1003758
20586408
Mechanism of Accumulation and Incorporation of Organometallic Pd Complexes into the Protein Nanocage of apo-Ferritin.
2010
10.2210/pdb3af9/pdb
pdb_00003af9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-11-26
RAYONIX MX225HE
Rotated-inclined double-crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.5080
1.0
BL41XU
SPring-8
0.5080
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
19840.363
Ferritin light chain
C48A
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
112.411
CADMIUM ION
3
syn
non-polymer
147.492
Palladium(II) allyl complex
1
syn
non-polymer
106.420
PALLADIUM ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
7
syn
non-polymer
18.015
water
153
nat
water
Ferritin L subunit
no
no
SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVAHFFRELAEEKREGAERLLKMQNQRGGRALFQD
LQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAG
LGEYLFERLTLKHD
SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVAHFFRELAEEKREGAERLLKMQNQRGGRALFQD
LQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAG
LGEYLFERLTLKHD
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
domestic horse, equine
sample
FTL
9796
Equus caballus
562
Escherichia coli
Nova Blue
Plasmid
pMK2
1
3.19
61.41
VAPOR DIFFUSION, HANGING DROP
7
ammonium sulfate, cadmium sulfate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2010-08-11
1
1
2011-07-13
1
2
2021-11-10
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2010-02-24
REL
REL
SO4
SULFATE ION
CD
CADMIUM ION
PLL
Palladium(II) allyl complex
PD
PALLADIUM ION
EDO
1,2-ETHANEDIOL
HOH
water
1DAT
PDB
experimental model
SO4
1
2
SO4
SO4
175
X
CD
1
3
CD
CD
176
X
CD
2
3
CD
CD
177
X
CD
3
3
CD
CD
178
X
PLL
1
4
PLL
PLL
179
X
PD
2
5
PD
PD
180
X
EDO
1
6
EDO
EDO
181
X
EDO
2
6
EDO
EDO
182
X
EDO
3
6
EDO
EDO
183
X
EDO
4
6
EDO
EDO
184
X
EDO
5
6
EDO
EDO
185
X
EDO
6
6
EDO
EDO
186
X
EDO
7
6
EDO
EDO
187
X
HOH
1
7
HOH
HOH
188
X
HOH
2
7
HOH
HOH
189
X
HOH
3
7
HOH
HOH
190
X
HOH
4
7
HOH
HOH
191
X
HOH
5
7
HOH
HOH
192
X
HOH
6
7
HOH
HOH
193
X
HOH
7
7
HOH
HOH
194
X
HOH
8
7
HOH
HOH
195
X
HOH
9
7
HOH
HOH
196
X
HOH
10
7
HOH
HOH
197
X
HOH
11
7
HOH
HOH
198
X
HOH
12
7
HOH
HOH
199
X
HOH
13
7
HOH
HOH
200
X
HOH
14
7
HOH
HOH
201
X
HOH
15
7
HOH
HOH
202
X
HOH
16
7
HOH
HOH
203
X
HOH
17
7
HOH
HOH
204
X
HOH
18
7
HOH
HOH
205
X
HOH
19
7
HOH
HOH
206
X
HOH
20
7
HOH
HOH
207
X
HOH
21
7
HOH
HOH
208
X
HOH
22
7
HOH
HOH
209
X
HOH
23
7
HOH
HOH
210
X
HOH
24
7
HOH
HOH
211
X
HOH
25
7
HOH
HOH
212
X
HOH
26
7
HOH
HOH
213
X
HOH
27
7
HOH
HOH
214
X
HOH
28
7
HOH
HOH
215
X
HOH
29
7
HOH
HOH
216
X
HOH
30
7
HOH
HOH
217
X
HOH
31
7
HOH
HOH
218
X
HOH
32
7
HOH
HOH
219
X
HOH
33
7
HOH
HOH
220
X
HOH
34
7
HOH
HOH
221
X
HOH
35
7
HOH
HOH
222
X
HOH
36
7
HOH
HOH
223
X
HOH
37
7
HOH
HOH
224
X
HOH
38
7
HOH
HOH
225
X
HOH
39
7
HOH
HOH
226
X
HOH
40
7
HOH
HOH
227
X
HOH
41
7
HOH
HOH
228
X
HOH
42
7
HOH
HOH
229
X
HOH
43
7
HOH
HOH
230
X
HOH
44
7
HOH
HOH
231
X
HOH
45
7
HOH
HOH
232
X
HOH
46
7
HOH
HOH
233
X
HOH
47
7
HOH
HOH
234
X
HOH
48
7
HOH
HOH
235
X
HOH
49
7
HOH
HOH
236
X
HOH
50
7
HOH
HOH
237
X
HOH
51
7
HOH
HOH
238
X
HOH
52
7
HOH
HOH
239
X
HOH
53
7
HOH
HOH
240
X
HOH
54
7
HOH
HOH
241
X
HOH
55
7
HOH
HOH
242
X
HOH
56
7
HOH
HOH
243
X
HOH
57
7
HOH
HOH
244
X
HOH
58
7
HOH
HOH
245
X
HOH
59
7
HOH
HOH
246
X
HOH
60
7
HOH
HOH
247
X
HOH
61
7
HOH
HOH
248
X
HOH
62
7
HOH
HOH
249
X
HOH
63
7
HOH
HOH
250
X
HOH
64
7
HOH
HOH
251
X
HOH
65
7
HOH
HOH
252
X
HOH
66
7
HOH
HOH
253
X
HOH
67
7
HOH
HOH
254
X
HOH
68
7
HOH
HOH
255
X
HOH
69
7
HOH
HOH
256
X
HOH
70
7
HOH
HOH
257
X
HOH
71
7
HOH
HOH
258
X
HOH
72
7
HOH
HOH
259
X
HOH
73
7
HOH
HOH
260
X
HOH
74
7
HOH
HOH
261
X
HOH
75
7
HOH
HOH
262
X
HOH
76
7
HOH
HOH
263
X
HOH
77
7
HOH
HOH
264
X
HOH
78
7
HOH
HOH
265
X
HOH
79
7
HOH
HOH
266
X
HOH
80
7
HOH
HOH
267
X
HOH
81
7
HOH
HOH
268
X
HOH
82
7
HOH
HOH
269
X
HOH
83
7
HOH
HOH
270
X
HOH
84
7
HOH
HOH
271
X
HOH
85
7
HOH
HOH
272
X
HOH
86
7
HOH
HOH
273
X
HOH
87
7
HOH
HOH
274
X
HOH
88
7
HOH
HOH
275
X
HOH
89
7
HOH
HOH
276
X
HOH
90
7
HOH
HOH
277
X
HOH
91
7
HOH
HOH
278
X
HOH
92
7
HOH
HOH
279
X
HOH
93
7
HOH
HOH
280
X
HOH
94
7
HOH
HOH
281
X
HOH
95
7
HOH
HOH
282
X
HOH
96
7
HOH
HOH
283
X
HOH
97
7
HOH
HOH
284
X
HOH
98
7
HOH
HOH
285
X
HOH
99
7
HOH
HOH
286
X
HOH
100
7
HOH
HOH
287
X
HOH
101
7
HOH
HOH
288
X
HOH
102
7
HOH
HOH
289
X
HOH
103
7
HOH
HOH
290
X
HOH
104
7
HOH
HOH
291
X
HOH
105
7
HOH
HOH
292
X
HOH
106
7
HOH
HOH
293
X
HOH
107
7
HOH
HOH
294
X
HOH
108
7
HOH
HOH
295
X
HOH
109
7
HOH
HOH
296
X
HOH
110
7
HOH
HOH
297
X
HOH
111
7
HOH
HOH
298
X
HOH
112
7
HOH
HOH
299
X
HOH
113
7
HOH
HOH
300
X
HOH
114
7
HOH
HOH
301
X
HOH
115
7
HOH
HOH
302
X
HOH
116
7
HOH
HOH
303
X
HOH
117
7
HOH
HOH
304
X
HOH
118
7
HOH
HOH
305
X
HOH
119
7
HOH
HOH
306
X
HOH
120
7
HOH
HOH
307
X
HOH
121
7
HOH
HOH
308
X
HOH
122
7
HOH
HOH
309
X
HOH
123
7
HOH
HOH
310
X
HOH
124
7
HOH
HOH
311
X
HOH
125
7
HOH
HOH
312
X
HOH
126
7
HOH
HOH
313
X
HOH
127
7
HOH
HOH
314
X
HOH
128
7
HOH
HOH
315
X
HOH
129
7
HOH
HOH
316
X
HOH
130
7
HOH
HOH
317
X
HOH
131
7
HOH
HOH
318
X
HOH
132
7
HOH
HOH
319
X
HOH
133
7
HOH
HOH
320
X
HOH
134
7
HOH
HOH
321
X
HOH
135
7
HOH
HOH
322
X
HOH
136
7
HOH
HOH
323
X
HOH
137
7
HOH
HOH
324
X
HOH
138
7
HOH
HOH
325
X
HOH
139
7
HOH
HOH
326
X
HOH
140
7
HOH
HOH
327
X
HOH
141
7
HOH
HOH
328
X
HOH
142
7
HOH
HOH
329
X
HOH
143
7
HOH
HOH
330
X
HOH
144
7
HOH
HOH
331
X
HOH
145
7
HOH
HOH
332
X
HOH
146
7
HOH
HOH
333
X
HOH
147
7
HOH
HOH
334
X
HOH
148
7
HOH
HOH
335
X
HOH
149
7
HOH
HOH
336
X
HOH
150
7
HOH
HOH
337
X
HOH
151
7
HOH
HOH
338
X
HOH
152
7
HOH
HOH
339
X
HOH
153
7
HOH
HOH
340
X
n
1
1
X
SER
2
n
2
SER
2
X
GLN
3
n
3
GLN
3
X
ILE
4
n
4
ILE
4
X
ARG
5
n
5
ARG
5
X
GLN
6
n
6
GLN
6
X
ASN
7
n
7
ASN
7
X
TYR
8
n
8
TYR
8
X
SER
9
n
9
SER
9
X
THR
10
n
10
THR
10
X
GLU
11
n
11
GLU
11
X
VAL
12
n
12
VAL
12
X
GLU
13
n
13
GLU
13
X
ALA
14
n
14
ALA
14
X
ALA
15
n
15
ALA
15
X
VAL
16
n
16
VAL
16
X
ASN
17
n
17
ASN
17
X
ARG
18
n
18
ARG
18
X
LEU
19
n
19
LEU
19
X
VAL
20
n
20
VAL
20
X
ASN
21
n
21
ASN
21
X
LEU
22
n
22
LEU
22
X
TYR
23
n
23
TYR
23
X
LEU
24
n
24
LEU
24
X
ARG
25
n
25
ARG
25
X
ALA
26
n
26
ALA
26
X
SER
27
n
27
SER
27
X
TYR
28
n
28
TYR
28
X
THR
29
n
29
THR
29
X
TYR
30
n
30
TYR
30
X
LEU
31
n
31
LEU
31
X
SER
32
n
32
SER
32
X
LEU
33
n
33
LEU
33
X
GLY
34
n
34
GLY
34
X
PHE
35
n
35
PHE
35
X
TYR
36
n
36
TYR
36
X
PHE
37
n
37
PHE
37
X
ASP
38
n
38
ASP
38
X
ARG
39
n
39
ARG
39
X
ASP
40
n
40
ASP
40
X
ASP
41
n
41
ASP
41
X
VAL
42
n
42
VAL
42
X
ALA
43
n
43
ALA
43
X
LEU
44
n
44
LEU
44
X
GLU
45
n
45
GLU
45
X
GLY
46
n
46
GLY
46
X
VAL
47
n
47
VAL
47
X
ALA
48
n
48
ALA
48
X
HIS
49
n
49
HIS
49
X
PHE
50
n
50
PHE
50
X
PHE
51
n
51
PHE
51
X
ARG
52
n
52
ARG
52
X
ALA
53
n
53
GLU
53
X
LEU
54
n
54
LEU
54
X
ALA
55
n
55
ALA
55
X
GLU
56
n
56
GLU
56
X
GLU
57
n
57
GLU
57
X
LYS
58
n
58
LYS
58
X
ARG
59
n
59
ARG
59
X
GLU
60
n
60
GLU
60
X
GLY
61
n
61
GLY
61
X
ALA
62
n
62
ALA
62
X
GLU
63
n
63
GLU
63
X
ARG
64
n
64
ARG
64
X
LEU
65
n
65
LEU
65
X
LEU
66
n
66
LEU
66
X
LYS
67
n
67
LYS
67
X
MET
68
n
68
MET
68
X
GLN
69
n
69
GLN
69
X
ASN
70
n
70
ASN
70
X
GLN
71
n
71
GLN
71
X
ARG
72
n
72
ARG
72
X
GLY
73
n
73
GLY
73
X
GLY
74
n
74
GLY
74
X
ARG
75
n
75
ARG
75
X
ALA
76
n
76
ALA
76
X
LEU
77
n
77
LEU
77
X
PHE
78
n
78
PHE
78
X
GLN
79
n
79
GLN
79
X
ASP
80
n
80
ASP
80
X
LEU
81
n
81
LEU
81
X
GLN
82
n
82
GLN
82
X
LYS
83
n
83
LYS
83
X
PRO
84
n
84
PRO
84
X
SER
85
n
85
SER
85
X
GLN
86
n
86
GLN
86
X
ASP
87
n
87
ASP
87
X
GLU
88
n
88
GLU
88
X
TRP
89
n
89
TRP
89
X
GLY
90
n
90
GLY
90
X
THR
91
n
91
THR
91
X
THR
92
n
92
THR
92
X
LEU
93
n
93
LEU
93
X
ASP
94
n
94
ASP
94
X
ALA
95
n
95
ALA
95
X
MET
96
n
96
MET
96
X
LYS
97
n
97
LYS
97
X
ALA
98
n
98
ALA
98
X
ALA
99
n
99
ALA
99
X
ILE
100
n
100
ILE
100
X
VAL
101
n
101
VAL
101
X
LEU
102
n
102
LEU
102
X
GLU
103
n
103
GLU
103
X
LYS
104
n
104
LYS
104
X
SER
105
n
105
SER
105
X
LEU
106
n
106
LEU
106
X
ASN
107
n
107
ASN
107
X
GLN
108
n
108
GLN
108
X
ALA
109
n
109
ALA
109
X
LEU
110
n
110
LEU
110
X
LEU
111
n
111
LEU
111
X
ASP
112
n
112
ASP
112
X
LEU
113
n
113
LEU
113
X
HIS
114
n
114
HIS
114
X
ALA
115
n
115
ALA
115
X
LEU
116
n
116
LEU
116
X
GLY
117
n
117
GLY
117
X
SER
118
n
118
SER
118
X
ALA
119
n
119
ALA
119
X
GLN
120
n
120
GLN
120
X
ALA
121
n
121
ALA
121
X
ASP
122
n
122
ASP
122
X
PRO
123
n
123
PRO
123
X
HIS
124
n
124
HIS
124
X
LEU
125
n
125
LEU
125
X
CYS
126
n
126
CYS
126
X
ASP
127
n
127
ASP
127
X
PHE
128
n
128
PHE
128
X
LEU
129
n
129
LEU
129
X
GLU
130
n
130
GLU
130
X
SER
131
n
131
SER
131
X
HIS
132
n
132
HIS
132
X
PHE
133
n
133
PHE
133
X
LEU
134
n
134
LEU
134
X
ASP
135
n
135
ASP
135
X
ALA
136
n
136
GLU
136
X
GLU
137
n
137
GLU
137
X
VAL
138
n
138
VAL
138
X
LYS
139
n
139
LYS
139
X
LEU
140
n
140
LEU
140
X
ILE
141
n
141
ILE
141
X
LYS
142
n
142
LYS
142
X
LYS
143
n
143
LYS
143
X
MET
144
n
144
MET
144
X
GLY
145
n
145
GLY
145
X
ASP
146
n
146
ASP
146
X
HIS
147
n
147
HIS
147
X
LEU
148
n
148
LEU
148
X
THR
149
n
149
THR
149
X
ASN
150
n
150
ASN
150
X
ILE
151
n
151
ILE
151
X
GLN
152
n
152
GLN
152
X
ARG
153
n
153
ARG
153
X
LEU
154
n
154
LEU
154
X
VAL
155
n
155
VAL
155
X
GLY
156
n
156
GLY
156
X
SER
157
n
157
SER
157
X
GLN
158
n
158
GLN
158
X
ALA
159
n
159
ALA
159
X
GLY
160
n
160
GLY
160
X
LEU
161
n
161
LEU
161
X
GLY
162
n
162
GLY
162
X
GLU
163
n
163
GLU
163
X
TYR
164
n
164
TYR
164
X
LEU
165
n
165
LEU
165
X
PHE
166
n
166
PHE
166
X
GLU
167
n
167
GLU
167
X
ARG
168
n
168
ARG
168
X
LEU
169
n
169
LEU
169
X
THR
170
n
170
THR
170
X
LEU
171
n
171
LEU
171
X
ALA
172
n
172
LYS
172
X
n
173
173
X
n
174
174
X
author_and_software_defined_assembly
PISA
24
24-meric
91540
-320
136630
X
ASP
80
A
OD2
ASP
80
1_555
X
CD
176
C
CD
CD
1_555
X
GLN
82
A
OE1
GLN
82
1_555
25.3
X
HIS
114
A
NE2
HIS
114
1_555
X
PLL
179
F
PD
PLL
1_555
X
PLL
179
F
C19
PLL
1_555
159.9
X
HIS
114
A
NE2
HIS
114
1_555
X
PLL
179
F
PD
PLL
1_555
X
PLL
179
F
C20
PLL
1_555
98.0
X
PLL
179
F
C19
PLL
1_555
X
PLL
179
F
PD
PLL
1_555
X
PLL
179
F
C20
PLL
1_555
62.5
X
HIS
114
A
NE2
HIS
114
1_555
X
PLL
179
F
PD
PLL
1_555
X
PLL
179
F
C21
PLL
1_555
126.8
X
PLL
179
F
C19
PLL
1_555
X
PLL
179
F
PD
PLL
1_555
X
PLL
179
F
C21
PLL
1_555
33.1
X
PLL
179
F
C20
PLL
1_555
X
PLL
179
F
PD
PLL
1_555
X
PLL
179
F
C21
PLL
1_555
32.3
X
HIS
114
A
NE2
HIS
114
1_555
X
PLL
179
F
PD
PLL
1_555
X
CYS
126
A
SG
CYS
126
1_555
100.8
X
PLL
179
F
C19
PLL
1_555
X
PLL
179
F
PD
PLL
1_555
X
CYS
126
A
SG
CYS
126
1_555
99.1
X
PLL
179
F
C20
PLL
1_555
X
PLL
179
F
PD
PLL
1_555
X
CYS
126
A
SG
CYS
126
1_555
160.7
X
PLL
179
F
C21
PLL
1_555
X
PLL
179
F
PD
PLL
1_555
X
CYS
126
A
SG
CYS
126
1_555
131.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
5_555
z,x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
6_555
z,-x,-y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
7_555
-z,-x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_555
-z,x,-y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_555
y,z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
10_555
-y,z,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_555
y,-z,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
12_555
-y,-z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
13_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
14_555
-y,-x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
15_555
y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
16_555
-y,x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
17_555
x,z,-y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
18_555
-x,z,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
19_555
-x,-z,-y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
20_555
x,-z,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
21_555
z,y,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
22_555
z,-y,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
23_555
-z,y,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
24_555
-z,-y,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
X
CD
176
C
CD
1
X
HOH
296
O
HOH
1
X
CG
GLU
53
A
CG
GLU
53
1
Y
1
X
CD
GLU
53
A
CD
GLU
53
1
Y
1
X
OE1
GLU
53
A
OE1
GLU
53
1
Y
1
X
OE2
GLU
53
A
OE2
GLU
53
1
Y
1
X
CG
GLU
136
A
CG
GLU
136
1
Y
1
X
CD
GLU
136
A
CD
GLU
136
1
Y
1
X
OE1
GLU
136
A
OE1
GLU
136
1
Y
1
X
OE2
GLU
136
A
OE2
GLU
136
1
Y
1
X
CG
LYS
172
A
CG
LYS
172
1
Y
1
X
CD
LYS
172
A
CD
LYS
172
1
Y
1
X
CE
LYS
172
A
CE
LYS
172
1
Y
1
X
NZ
LYS
172
A
NZ
LYS
172
1
Y
1
X
SER
1
A
SER
1
1
Y
1
X
HIS
173
A
HIS
173
1
Y
1
X
ASP
174
A
ASP
174
1
Y
1
X
VAL
42
-125.38
-62.26
1
X
PHE
133
-133.34
-58.30
16.087
0.949
0.935
0.20283
0.17710
0.17837
1.85
25.55
1162
21557
5.1
99.93
1.872
0.059
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.109
0.104
0.80
0.80
1.20
1DAT
MAXIMUM LIKELIHOOD
MASK
1.85
25.55
153
1554
41
0
1360
0.011
0.021
1465
1.219
1.973
1968
4.160
5.000
184
36.389
23.718
78
13.595
15.000
263
17.119
15.000
14
0.095
0.200
214
0.005
0.020
1108
0.218
0.200
729
0.304
0.200
1007
0.120
0.200
131
0.106
0.200
1
0.185
0.200
81
0.128
0.200
28
0.211
0.200
2
0.897
1.500
888
1.412
2.000
1380
2.469
3.000
634
4.052
4.500
581
16.865
3.000
5
0.220
0.180
1.899
99
1554
20
100.00
16.771
1.85
30
3AF9
22730
0.094
1
11.3
100
0.272
1.85
1.92
11.6
100
data collection
HKL-2000
phasing
MOLREP
refinement
REFMAC
5.2.0005
data scaling
SCALEPACK
Crystal Structure of Pd(allyl)/apo-C48AFr
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
7
N
N
X
SER
9
A
SER
9
HELX_P
X
PHE
37
A
PHE
37
1
1
29
X
LEU
44
A
LEU
44
HELX_P
X
GLY
73
A
GLY
73
1
2
30
X
THR
91
A
THR
91
HELX_P
X
GLN
120
A
GLN
120
1
3
30
X
ASP
122
A
ASP
122
HELX_P
X
PHE
133
A
PHE
133
1
4
12
X
PHE
133
A
PHE
133
HELX_P
X
VAL
155
A
VAL
155
1
5
23
X
GLN
158
A
GLN
158
HELX_P
X
THR
170
A
THR
170
1
6
13
metalc
2.353
A
X
HIS
49
A
NE2
HIS
49
1_555
X
CD
177
D
CD
CD
1_555
metalc
2.210
X
ASP
80
A
OD2
ASP
80
1_555
X
CD
176
C
CD
CD
1_555
metalc
1.960
X
GLN
82
A
OE1
GLN
82
1_555
X
CD
176
C
CD
CD
13_555
metalc
2.136
X
HIS
114
A
NE2
HIS
114
1_555
X
PLL
179
F
PD
PLL
1_555
metalc
2.447
X
CYS
126
A
SG
CYS
126
1_555
X
PLL
179
F
PD
PLL
1_555
metalc
2.386
X
CYS
126
A
SG
CYS
126
1_555
X
PD
180
G
PD
PD
1_555
metalc
2.094
X
ASP
135
A
OD2
ASP
135
1_555
X
CD
178
E
CD
CD
1_555
METAL BINDING PROTEIN
Iron Storage Protein, Light Chain Ferritin, Artificial Metalloprotein, Metal Binding Protein
FRIL_HORSE
UNP
1
2
P02791
SSQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLKMQNQRGGRALFQD
LQKPSQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAG
LGEYLFERLTLKHD
2
175
3AF9
1
174
P02791
X
1
1
174
1
CYS
engineered mutation
ALA
48
3AF9
X
P02791
UNP
49
48
BINDING SITE FOR RESIDUE SO4 X 175
X
SO4
175
Software
5
BINDING SITE FOR RESIDUE CD X 176
X
CD
176
Software
4
BINDING SITE FOR RESIDUE CD X 177
X
CD
177
Software
1
BINDING SITE FOR RESIDUE CD X 178
X
CD
178
Software
2
BINDING SITE FOR RESIDUE PLL X 179
X
PLL
179
Software
6
BINDING SITE FOR RESIDUE PD X 180
X
PD
180
Software
3
BINDING SITE FOR RESIDUE EDO X 181
X
EDO
181
Software
6
BINDING SITE FOR RESIDUE EDO X 182
X
EDO
182
Software
4
BINDING SITE FOR RESIDUE EDO X 183
X
EDO
183
Software
1
BINDING SITE FOR RESIDUE EDO X 184
X
EDO
184
Software
4
BINDING SITE FOR RESIDUE EDO X 185
X
EDO
185
Software
8
BINDING SITE FOR RESIDUE EDO X 186
X
EDO
186
Software
3
BINDING SITE FOR RESIDUE EDO X 187
X
EDO
187
Software
4
X
GLN
6
A
GLN
6
5
1_555
X
ASN
7
A
ASN
7
5
1_555
X
HOH
223
O
HOH
5
1_555
X
HOH
252
O
HOH
5
9_555
X
HOH
257
O
HOH
5
1_555
X
ASP
80
A
ASP
80
4
86_445
X
ASP
80
A
ASP
80
4
1_555
X
GLN
82
A
GLN
82
4
13_555
X
GLN
82
A
GLN
82
4
74_445
X
HIS
49
A
HIS
49
1
1_555
X
ASP
127
A
ASP
127
2
5_555
X
ASP
135
A
ASP
135
2
1_555
X
HIS
114
A
HIS
114
6
1_555
X
PRO
123
A
PRO
123
6
5_555
X
CYS
126
A
CYS
126
6
1_555
X
GLU
130
A
GLU
130
6
1_555
X
PD
180
G
PD
6
1_555
X
HOH
293
O
HOH
6
1_555
X
CYS
126
A
CYS
126
3
1_555
X
PLL
179
F
PLL
3
1_555
X
HOH
293
O
HOH
3
9_555
X
TYR
36
A
TYR
36
6
1_555
X
GLY
90
A
GLY
90
6
1_555
X
THR
91
A
THR
91
6
1_555
X
ARG
153
A
ARG
153
6
21_555
X
GLU
163
A
GLU
163
6
1_555
X
HOH
309
O
HOH
6
1_555
X
THR
10
A
THR
10
4
1_555
X
GLU
11
A
GLU
11
4
1_555
X
ALA
14
A
ALA
14
4
1_555
X
HOH
218
O
HOH
4
1_555
X
SER
27
A
SER
27
1
13_555
X
ARG
5
A
ARG
5
4
1_555
X
TYR
8
A
TYR
8
4
1_555
X
THR
10
A
THR
10
4
1_555
X
HOH
223
O
HOH
4
1_555
X
ILE
151
A
ILE
151
8
1_555
X
LEU
154
A
LEU
154
8
1_555
X
VAL
155
A
VAL
155
8
1_555
X
ALA
159
A
ALA
159
8
1_555
X
GLY
162
A
GLY
162
8
1_555
X
GLU
163
A
GLU
163
8
1_555
X
HOH
255
O
HOH
8
1_555
X
HOH
277
O
HOH
8
1_555
X
ARG
25
A
ARG
25
3
1_555
X
LYS
83
A
LYS
83
3
86_445
X
SER
85
A
SER
85
3
1_555
X
LEU
93
A
LEU
93
4
1_555
X
GLN
152
A
GLN
152
4
1_555
X
VAL
155
A
VAL
155
4
1_555
X
HOH
269
O
HOH
4
1_555
209
F 4 3 2