0.026399 0.000000 0.012305 0.000000 0.025133 0.000000 0.000000 0.000000 0.030746 0.00000 0.00000 0.00000 Noguchi, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 114.99 90.00 37.880 39.789 35.884 C10 H14 N5 O7 P 347.221 [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate 3'-AMP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 R C N 7 S C N 8 N O N 9 R C N 10 N O N 11 R C N 12 N C N 13 N O Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N C Y 21 N N Y 22 N C Y 23 N N N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N CA N 112 N N N 113 R C N 114 N C N 115 N O N 116 N C N 117 N S N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N N N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 N C N 167 N C N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 N C Y 180 N C Y 181 N N Y 182 N C Y 183 N C Y 184 N N N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 S C N 204 N C N 205 N C N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N C N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C Y 248 N C Y 249 N C Y 250 N C Y 251 N C Y 252 N C Y 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N C N 272 N C N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N O N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 R C N 302 N O N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N N Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N C N 352 N O N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C N 370 N C N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing Y 15 N sing Y 16 N sing Y 17 N doub Y 18 N sing Y 19 N doub Y 20 N sing N 21 N sing Y 22 N sing Y 23 N doub Y 24 N sing Y 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N doub Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing Y 244 N doub Y 245 N sing Y 246 N sing N 247 N sing Y 248 N doub N 249 N sing Y 250 N doub N 251 N sing Y 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing Y 313 N doub Y 314 N sing Y 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N sing Y 322 N doub N 323 N sing Y 324 N doub N 325 N sing Y 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing Y 341 N doub Y 342 N sing Y 343 N sing N 344 N sing Y 345 N doub N 346 N sing Y 347 N doub N 348 N sing Y 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 66 843 849 10.1107/S0907444910019621 20606265 Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate 2010 10.2210/pdb3agn/pdb pdb_00003agn 95 1 CCD 2010-01-25 ADSC QUANTUM 4r TRIANGULAR Si(111) SINGLE WAVELENGTH M x-ray 1 0.978 1.0 BL-6A Photon Factory 0.978 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 12392.090 Ribonuclease U2 3.1.27.4 1 nat polymer 347.221 [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 166 nat water RNase U2 no no CDIPQSTNCGGNVYSNDDINTAIQGALDDVANGDRPDNYPHQYYDEASEDITLCCGSGPWSEFPLVYNGPYYSSRDNYVS PGPDRVIYQTNTGEFCATVTHTGAASYDGFTQCS CDIPQSTNCGGNVYSNDDINTAIQGALDDVANGDRPDNYPHQYYDEASEDITLCCGSGPWSEFPLVYNGPYYSSRDNYVS PGPDRVIYQTNTGEFCATVTHTGAASYDGFTQCS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Smut fungus sample 5271 Ustilago sphaerogena 1 1.98 37.81 VAPOR DIFFUSION, HANGING DROP 3.75 12.5% PEG 8000, 200mM calcium acetate, 100mM sodium cacodylate, 240mM HCl, pH 3.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Database references Data collection Database references Derived calculations Refinement description 1 0 2010-07-07 1 1 2011-07-13 1 2 2012-04-04 1 3 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id The same protein, Asp45 of which is isomerized to isoaspartate Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate PDBJ Y PDBJ 2010-04-03 REL REL 3AM [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate CA CALCIUM ION HOH water 1RTU PDB ENTRY 1RTU PDB experimental model 3AM 115 2 3AM 3AM 115 A CA 116 3 CA CA 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 121 4 HOH HOH 121 A HOH 122 4 HOH HOH 122 A HOH 123 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 125 4 HOH HOH 125 A HOH 126 4 HOH HOH 126 A HOH 127 4 HOH HOH 127 A HOH 128 4 HOH HOH 128 A HOH 129 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 131 4 HOH HOH 131 A HOH 132 4 HOH HOH 132 A HOH 133 4 HOH HOH 133 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 137 4 HOH HOH 137 A HOH 138 4 HOH HOH 138 A HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 141 4 HOH HOH 141 A HOH 142 4 HOH HOH 142 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 145 4 HOH HOH 145 A HOH 146 4 HOH HOH 146 A HOH 147 4 HOH HOH 147 A HOH 148 4 HOH HOH 148 A HOH 149 4 HOH HOH 149 A HOH 150 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 152 4 HOH HOH 152 A HOH 153 4 HOH HOH 153 A HOH 154 4 HOH HOH 154 A HOH 155 4 HOH HOH 155 A HOH 156 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 159 4 HOH HOH 159 A HOH 160 4 HOH HOH 160 A HOH 161 4 HOH HOH 161 A HOH 162 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 164 4 HOH HOH 164 A HOH 165 4 HOH HOH 165 A HOH 166 4 HOH HOH 166 A HOH 167 4 HOH HOH 167 A HOH 168 4 HOH HOH 168 A HOH 169 4 HOH HOH 169 A HOH 170 4 HOH HOH 170 A HOH 171 4 HOH HOH 171 A HOH 172 4 HOH HOH 172 A HOH 173 4 HOH HOH 173 A HOH 174 4 HOH HOH 174 A HOH 175 4 HOH HOH 175 A HOH 176 4 HOH HOH 176 A HOH 177 4 HOH HOH 177 A HOH 178 4 HOH HOH 178 A HOH 179 4 HOH HOH 179 A HOH 180 4 HOH HOH 180 A HOH 181 4 HOH HOH 181 A HOH 182 4 HOH HOH 182 A HOH 183 4 HOH HOH 183 A HOH 184 4 HOH HOH 184 A HOH 185 4 HOH HOH 185 A HOH 186 4 HOH HOH 186 A HOH 187 4 HOH HOH 187 A HOH 188 4 HOH HOH 188 A HOH 189 4 HOH HOH 189 A HOH 190 4 HOH HOH 190 A HOH 191 4 HOH HOH 191 A HOH 192 4 HOH HOH 192 A HOH 193 4 HOH HOH 193 A HOH 194 4 HOH HOH 194 A HOH 195 4 HOH HOH 195 A HOH 196 4 HOH HOH 196 A HOH 197 4 HOH HOH 197 A HOH 198 4 HOH HOH 198 A HOH 199 4 HOH HOH 199 A HOH 200 4 HOH HOH 200 A HOH 201 4 HOH HOH 201 A HOH 202 4 HOH HOH 202 A HOH 203 4 HOH HOH 203 A HOH 204 4 HOH HOH 204 A HOH 205 4 HOH HOH 205 A HOH 206 4 HOH HOH 206 A HOH 207 4 HOH HOH 207 A HOH 208 4 HOH HOH 208 A HOH 209 4 HOH HOH 209 A HOH 210 4 HOH HOH 210 A HOH 211 4 HOH HOH 211 A HOH 212 4 HOH HOH 212 A HOH 213 4 HOH HOH 213 A HOH 214 4 HOH HOH 214 A HOH 215 4 HOH HOH 215 A HOH 216 4 HOH HOH 216 A HOH 217 4 HOH HOH 217 A HOH 218 4 HOH HOH 218 A HOH 219 4 HOH HOH 219 A HOH 220 4 HOH HOH 220 A HOH 221 4 HOH HOH 221 A HOH 222 4 HOH HOH 222 A HOH 223 4 HOH HOH 223 A HOH 224 4 HOH HOH 224 A HOH 225 4 HOH HOH 225 A HOH 226 4 HOH HOH 226 A HOH 227 4 HOH HOH 227 A HOH 228 4 HOH HOH 228 A HOH 229 4 HOH HOH 229 A HOH 230 4 HOH HOH 230 A HOH 231 4 HOH HOH 231 A HOH 232 4 HOH HOH 232 A HOH 233 4 HOH HOH 233 A HOH 234 4 HOH HOH 234 A HOH 235 4 HOH HOH 235 A HOH 236 4 HOH HOH 236 A HOH 237 4 HOH HOH 237 A HOH 238 4 HOH HOH 238 A HOH 239 4 HOH HOH 239 A HOH 240 4 HOH HOH 240 A HOH 241 4 HOH HOH 241 A HOH 242 4 HOH HOH 242 A HOH 243 4 HOH HOH 243 A HOH 244 4 HOH HOH 244 A HOH 245 4 HOH HOH 245 A HOH 246 4 HOH HOH 246 A HOH 247 4 HOH HOH 247 A HOH 248 4 HOH HOH 248 A HOH 249 4 HOH HOH 249 A HOH 250 4 HOH HOH 250 A HOH 251 4 HOH HOH 251 A HOH 252 4 HOH HOH 252 A HOH 253 4 HOH HOH 253 A HOH 254 4 HOH HOH 254 A HOH 255 4 HOH HOH 255 A HOH 256 4 HOH HOH 256 A HOH 257 4 HOH HOH 257 A HOH 258 4 HOH HOH 258 A HOH 259 4 HOH HOH 259 A HOH 260 4 HOH HOH 260 A HOH 261 4 HOH HOH 261 A HOH 262 4 HOH HOH 262 A HOH 263 4 HOH HOH 263 A HOH 264 4 HOH HOH 264 A HOH 265 4 HOH HOH 265 A HOH 266 4 HOH HOH 266 A HOH 267 4 HOH HOH 267 A HOH 268 4 HOH HOH 268 A HOH 269 4 HOH HOH 269 A HOH 270 4 HOH HOH 270 A HOH 271 4 HOH HOH 271 A HOH 272 4 HOH HOH 272 A HOH 273 4 HOH HOH 273 A HOH 274 4 HOH HOH 274 A HOH 275 4 HOH HOH 275 A HOH 276 4 HOH HOH 276 A HOH 277 4 HOH HOH 277 A HOH 278 4 HOH HOH 278 A HOH 279 4 HOH HOH 279 A HOH 280 4 HOH HOH 280 A HOH 281 4 HOH HOH 281 A HOH 282 4 HOH HOH 282 A CYS 1 n 1 CYS 1 A ASP 2 n 2 ASP 2 A ILE 3 n 3 ILE 3 A PRO 4 n 4 PRO 4 A GLN 5 n 5 GLN 5 A SER 6 n 6 SER 6 A THR 7 n 7 THR 7 A ASN 8 n 8 ASN 8 A CYS 9 n 9 CYS 9 A GLY 10 n 10 GLY 10 A GLY 11 n 11 GLY 11 A ASN 12 n 12 ASN 12 A VAL 13 n 13 VAL 13 A TYR 14 n 14 TYR 14 A SER 15 n 15 SER 15 A ASN 16 n 16 ASN 16 A ASP 17 n 17 ASP 17 A ASP 18 n 18 ASP 18 A ILE 19 n 19 ILE 19 A ASN 20 n 20 ASN 20 A THR 21 n 21 THR 21 A ALA 22 n 22 ALA 22 A ILE 23 n 23 ILE 23 A GLN 24 n 24 GLN 24 A GLY 25 n 25 GLY 25 A ALA 26 n 26 ALA 26 A LEU 27 n 27 LEU 27 A ASP 28 n 28 ASP 28 A ASP 29 n 29 ASP 29 A VAL 30 n 30 VAL 30 A ALA 31 n 31 ALA 31 A ASN 32 n 32 ASN 32 A GLY 33 n 33 GLY 33 A ASP 34 n 34 ASP 34 A ARG 35 n 35 ARG 35 A PRO 36 n 36 PRO 36 A ASP 37 n 37 ASP 37 A ASN 38 n 38 ASN 38 A TYR 39 n 39 TYR 39 A PRO 40 n 40 PRO 40 A HIS 41 n 41 HIS 41 A GLN 42 n 42 GLN 42 A TYR 43 n 43 TYR 43 A TYR 44 n 44 TYR 44 A ASP 45 n 45 ASP 45 A GLU 46 n 46 GLU 46 A ALA 47 n 47 ALA 47 A SER 48 n 48 SER 48 A GLU 49 n 49 GLU 49 A ASP 50 n 50 ASP 50 A ILE 51 n 51 ILE 51 A THR 52 n 52 THR 52 A LEU 53 n 53 LEU 53 A CYS 54 n 54 CYS 54 A CYS 55 n 55 CYS 55 A GLY 56 n 56 GLY 56 A SER 57 n 57 SER 57 A GLY 58 n 58 GLY 58 A PRO 59 n 59 PRO 59 A TRP 60 n 60 TRP 60 A SER 61 n 61 SER 61 A GLU 62 n 62 GLU 62 A PHE 63 n 63 PHE 63 A PRO 64 n 64 PRO 64 A LEU 65 n 65 LEU 65 A VAL 66 n 66 VAL 66 A TYR 67 n 67 TYR 67 A ASN 68 n 68 ASN 68 A GLY 69 n 69 GLY 69 A PRO 70 n 70 PRO 70 A TYR 71 n 71 TYR 71 A TYR 72 n 72 TYR 72 A SER 73 n 73 SER 73 A SER 74 n 74 SER 74 A ARG 75 n 75 ARG 75 A ASP 76 n 76 ASP 76 A ASN 77 n 77 ASN 77 A TYR 78 n 78 TYR 78 A VAL 79 n 79 VAL 79 A SER 80 n 80 SER 80 A PRO 81 n 81 PRO 81 A GLY 82 n 82 GLY 82 A PRO 83 n 83 PRO 83 A ASP 84 n 84 ASP 84 A ARG 85 n 85 ARG 85 A VAL 86 n 86 VAL 86 A ILE 87 n 87 ILE 87 A TYR 88 n 88 TYR 88 A GLN 89 n 89 GLN 89 A THR 90 n 90 THR 90 A ASN 91 n 91 ASN 91 A THR 92 n 92 THR 92 A GLY 93 n 93 GLY 93 A GLU 94 n 94 GLU 94 A PHE 95 n 95 PHE 95 A CYS 96 n 96 CYS 96 A ALA 97 n 97 ALA 97 A THR 98 n 98 THR 98 A VAL 99 n 99 VAL 99 A THR 100 n 100 THR 100 A HIS 101 n 101 HIS 101 A THR 102 n 102 THR 102 A GLY 103 n 103 GLY 103 A ALA 104 n 104 ALA 104 A ALA 105 n 105 ALA 105 A SER 106 n 106 SER 106 A TYR 107 n 107 TYR 107 A ASP 108 n 108 ASP 108 A GLY 109 n 109 GLY 109 A PHE 110 n 110 PHE 110 A THR 111 n 111 THR 111 A GLN 112 n 112 GLN 112 A CYS 113 n 113 CYS 113 A SER 114 n 114 SER 114 A author_and_software_defined_assembly PISA 1 monomeric A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 A GLN 112 A OE1 GLN 112 1_555 79.8 A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 A HOH 163 D O HOH 1_555 79.4 A GLN 112 A OE1 GLN 112 1_555 A CA 116 C CA CA 1_555 A HOH 163 D O HOH 1_555 111.9 A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 A HOH 164 D O HOH 1_555 130.9 A GLN 112 A OE1 GLN 112 1_555 A CA 116 C CA CA 1_555 A HOH 164 D O HOH 1_555 77.9 A HOH 163 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 164 D O HOH 1_555 149.7 A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 A HOH 165 D O HOH 1_555 137.7 A GLN 112 A OE1 GLN 112 1_555 A CA 116 C CA CA 1_555 A HOH 165 D O HOH 1_555 78.7 A HOH 163 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 165 D O HOH 1_555 75.6 A HOH 164 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 165 D O HOH 1_555 78.7 A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 A HOH 166 D O HOH 1_555 126.0 A GLN 112 A OE1 GLN 112 1_555 A CA 116 C CA CA 1_555 A HOH 166 D O HOH 1_555 154.1 A HOH 163 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 166 D O HOH 1_555 76.1 A HOH 164 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 166 D O HOH 1_555 83.9 A HOH 165 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 166 D O HOH 1_555 79.9 A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 72.2 A GLN 112 A OE1 GLN 112 1_555 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 125.2 A HOH 163 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 107.9 A HOH 164 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 86.2 A HOH 165 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 148.4 A HOH 166 D O HOH 1_555 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 71.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 9 A N CYS 9 A O ASN 12 A O ASN 12 A N HIS 41 A N HIS 41 A O GLU 62 A O GLU 62 A N SER 61 A N SER 61 A O TYR 88 A O TYR 88 A N ILE 87 A N ILE 87 A O ALA 97 A O ALA 97 A N THR 100 A N THR 100 A O THR 111 A O THR 111 1 A ASN 77 -155.87 86.36 48.82 6.480 2.73 0.020 0.000 0.000 0.030 0.000 -0.050 0.978 0.975 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY 0.127 0.117 0.118 0.960 31.050 2949 58481 5.000 98.760 0.125 0.116 1.00 0.25 0.954 0.336 0.009 0.018 0.018 RANDOM 1 anisotropic THROUGHOUT 0.00 0 MOLECULAR REPLACEMENT 0.018 0.018 0.800 0.800 1.400 PDB ENTRY 1RTU MAXIMUM LIKELIHOOD MASK 0.018 0.018 0.960 31.050 166 1060 24 0 870 0.012 0.021 982 0.008 0.020 601 2.405 1.972 1358 3.562 3.000 1480 7.071 5.000 122 37.064 25.769 52 12.389 15.000 124 4.071 15.000 3 0.086 0.200 138 0.010 0.021 1143 0.003 0.020 194 1.122 1.500 601 0.287 1.500 241 1.691 2.000 972 2.160 3.000 381 2.803 4.500 385 0.735 3.000 1582 0.252 0.238 0.984 178 3571 3749 3749 20 86.340 8.0 0.96 34.3 3AGN 58543 0 0.052 1 72.2 14.7 98.9 0.295 0.960 0.984 7.43 3749 1 5.0 86.3 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB help@deposit.rcsb.org Jan. 22, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.100 data collection HKL-2000 data reduction HKL-2000 data scaling SCALEPACK phasing MOLREP Crystal Structure of Ustilago sphaerogena Ribonuclease U2 Complexed with adenosine 3'-monophosphate 1 N N 2 N N 3 N N 4 N N A ASN 16 A ASN 16 HELX_P A ASN 32 A ASN 32 1 1 17 A ARG 35 A ARG 35 HELX_P A TYR 39 A TYR 39 5 2 5 A GLU 46 A GLU 46 HELX_P A ASP 50 A ASP 50 5 3 5 disulf 2.023 A A A CYS 1 A SG CYS 1 1_555 A CYS 54 A SG CYS 54 1_555 disulf 2.059 B B A CYS 1 A SG CYS 1 1_555 A CYS 54 A SG CYS 54 1_555 disulf 2.050 A CYS 9 A SG CYS 9 1_555 A CYS 113 A SG CYS 113 1_555 disulf 2.030 A A CYS 55 A SG CYS 55 1_555 A CYS 96 A SG CYS 96 1_555 disulf 2.041 B A CYS 55 A SG CYS 55 1_555 A CYS 96 A SG CYS 96 1_555 metalc 2.402 A ASP 50 A O ASP 50 1_555 A CA 116 C CA CA 1_555 metalc 2.666 A GLN 112 A OE1 GLN 112 1_555 A CA 116 C CA CA 1_555 metalc 2.312 A CA 116 C CA CA 1_555 A HOH 163 D O HOH 1_555 metalc 2.320 A CA 116 C CA CA 1_555 A HOH 164 D O HOH 1_555 metalc 2.347 A CA 116 C CA CA 1_555 A HOH 165 D O HOH 1_555 metalc 2.373 A CA 116 C CA CA 1_555 A HOH 166 D O HOH 1_555 metalc 2.511 A CA 116 C CA CA 1_555 A HOH 279 D O HOH 1_555 HYDROLASE purine-specific endo-ribonuclease, HYDROLASE A TYR 39 A TYR 39 1 A PRO 40 A PRO 40 8.00 A GLY 58 A GLY 58 1 A PRO 59 A PRO 59 7.21 A GLY 58 A GLY 58 1 A PRO 59 A PRO 59 7.13 A GLY 69 A GLY 69 1 A PRO 70 A PRO 70 5.43 RNU2_USTSP UNP 1 1 P00654 CDIPQSTNCGGNVYSNDDINTAIQGALDDVANGDRPDNYPHQYYDEASEDITLCCGSGPWSEFPLVYNGPYYSSRDNYVS PGPDRVIYQTNTGEFCATVTHTGAASYDGFTQCS 1 114 3AGN 1 114 P00654 A 1 1 114 2 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 6 A SER 6 A CYS 9 A CYS 9 A ASN 12 A ASN 12 A SER 15 A SER 15 A HIS 41 A HIS 41 A TYR 43 A TYR 43 A TRP 60 A TRP 60 A PRO 64 A PRO 64 A ASP 84 A ASP 84 A GLN 89 A GLN 89 A PHE 95 A PHE 95 A THR 100 A THR 100 A THR 111 A THR 111 A GLN 112 A GLN 112 BINDING SITE FOR RESIDUE 3AM A 115 A 3AM 115 Software 17 BINDING SITE FOR RESIDUE CA A 116 A CA 116 Software 7 A TYR 39 A TYR 39 17 1_555 A HIS 41 A HIS 41 17 1_555 A GLN 42 A GLN 42 17 1_555 A TYR 43 A TYR 43 17 1_555 A TYR 44 A TYR 44 17 1_555 A GLU 46 A GLU 46 17 1_555 A GLU 49 A GLU 49 17 1_555 A GLU 62 A GLU 62 17 1_555 A ARG 85 A ARG 85 17 1_555 A HIS 101 A HIS 101 17 1_555 A ASP 108 A ASP 108 17 1_555 A PHE 110 A PHE 110 17 1_555 A HOH 180 D HOH 17 1_555 A HOH 238 D HOH 17 1_555 A HOH 240 D HOH 17 1_555 A HOH 246 D HOH 17 1_555 A HOH 247 D HOH 17 1_555 A ASP 50 A ASP 50 7 1_555 A GLN 112 A GLN 112 7 1_555 A HOH 163 D HOH 7 1_555 A HOH 164 D HOH 7 1_555 A HOH 165 D HOH 7 1_555 A HOH 166 D HOH 7 1_555 A HOH 279 D HOH 7 1_555 4 P 1 21 1