0.016505
0.000000
0.000000
0.000000
0.016130
0.000000
0.000000
0.000000
0.012230
0.00000
0.00000
0.00000
Wielens, J.
Parker, M.W.
Chalmers, D.K.
Scanlon, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.587
61.997
81.765
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C7 H6 O3
138.121
1,3-benzodioxol-5-ol
non-polymer
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
Y
74
N
C
Y
75
N
C
Y
76
N
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
N
80
N
O
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
CD
N
91
N
N
N
92
R
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
S
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
Y
163
N
N
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
S
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
S
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
S
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
Y
70
N
doub
Y
71
N
sing
Y
72
N
sing
N
73
N
sing
Y
74
N
doub
Y
75
N
sing
Y
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
Y
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
doub
N
272
N
sing
Y
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
DE
Chemmedchem
1860-7179
6
258
261
10.1002/cmdc.201000483
21275048
Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1
2011
10.2210/pdb3ao1/pdb
pdb_00003ao1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
double crystal monochromator and K-B pair of biomorph mirrors
IMAGE PLATE
2007-08-27
MAR scanner 300 mm plate
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97937
1.0
23-ID-B
APS
0.97937
SYNCHROTRON
APS BEAMLINE 23-ID-B
17802.174
POL polyprotein
Integrase CATALYTIC CORE DOMAIN, 765-927
C56S, W131D, F139D, F185H
2
man
polymer
112.411
CADMIUM ION
4
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
138.121
1,3-benzodioxol-5-ol
3
syn
non-polymer
18.015
water
72
nat
water
no
no
MHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA
CDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQ
TKE
MHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA
CDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKGGIGGYSAGERIVDIIATDIQ
TKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NL43
sample
pol
11676
Human immunodeficiency virus 1
562
Escherichia coli
BL21 (de3)
Plasmid
PeT23b+
1
2.16
42.96
VAPOR DIFFUSION, HANGING DROP
5.6
1.6M AmSO4, 0.1M Na Citrate pH 5.6, 5mM CdCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-03-09
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
HIV-1 integrase core domain
PDBJ
Y
PDBJ
2010-09-17
REL
REL
CD
CADMIUM ION
SO4
SULFATE ION
BZX
1,3-benzodioxol-5-ol
HOH
water
3L3U
PDB ENTRY 3L3U
PDB
experimental model
CD
1003
2
CD
CD
1003
A
CD
1004
2
CD
CD
1004
A
SO4
1
3
SO4
SO4
1
A
BZX
1
4
BZX
BZX
213
A
BZX
1
4
BZX
BZX
214
A
CD
1001
2
CD
CD
1001
B
CD
1002
2
CD
CD
1002
B
BZX
1
4
BZX
BZX
1
B
HOH
4
5
HOH
HOH
4
A
HOH
5
5
HOH
HOH
5
A
HOH
8
5
HOH
HOH
8
A
HOH
9
5
HOH
HOH
9
A
HOH
11
5
HOH
HOH
11
A
HOH
14
5
HOH
HOH
14
A
HOH
15
5
HOH
HOH
15
A
HOH
16
5
HOH
HOH
16
A
HOH
17
5
HOH
HOH
17
A
HOH
23
5
HOH
HOH
23
A
HOH
24
5
HOH
HOH
24
A
HOH
26
5
HOH
HOH
26
A
HOH
27
5
HOH
HOH
27
A
HOH
29
5
HOH
HOH
29
A
HOH
30
5
HOH
HOH
30
A
HOH
31
5
HOH
HOH
31
A
HOH
32
5
HOH
HOH
32
A
HOH
33
5
HOH
HOH
33
A
HOH
34
5
HOH
HOH
34
A
HOH
35
5
HOH
HOH
35
A
HOH
37
5
HOH
HOH
37
A
HOH
38
5
HOH
HOH
38
A
HOH
39
5
HOH
HOH
39
A
HOH
40
5
HOH
HOH
40
A
HOH
42
5
HOH
HOH
42
A
HOH
44
5
HOH
HOH
44
A
HOH
46
5
HOH
HOH
46
A
HOH
51
5
HOH
HOH
215
A
HOH
55
5
HOH
HOH
216
A
HOH
56
5
HOH
HOH
217
A
HOH
57
5
HOH
HOH
218
A
HOH
60
5
HOH
HOH
219
A
HOH
61
5
HOH
HOH
220
A
HOH
64
5
HOH
HOH
221
A
HOH
2
5
HOH
HOH
2
B
HOH
3
5
HOH
HOH
3
B
HOH
6
5
HOH
HOH
6
B
HOH
7
5
HOH
HOH
7
B
HOH
10
5
HOH
HOH
10
B
HOH
12
5
HOH
HOH
12
B
HOH
13
5
HOH
HOH
13
B
HOH
18
5
HOH
HOH
18
B
HOH
19
5
HOH
HOH
19
B
HOH
20
5
HOH
HOH
20
B
HOH
21
5
HOH
HOH
21
B
HOH
22
5
HOH
HOH
22
B
HOH
25
5
HOH
HOH
25
B
HOH
28
5
HOH
HOH
28
B
HOH
36
5
HOH
HOH
36
B
HOH
41
5
HOH
HOH
41
B
HOH
43
5
HOH
HOH
43
B
HOH
45
5
HOH
HOH
45
B
HOH
47
5
HOH
HOH
47
B
HOH
48
5
HOH
HOH
48
B
HOH
49
5
HOH
HOH
49
B
HOH
1
5
HOH
HOH
213
B
HOH
50
5
HOH
HOH
214
B
HOH
52
5
HOH
HOH
215
B
HOH
53
5
HOH
HOH
216
B
HOH
54
5
HOH
HOH
217
B
HOH
58
5
HOH
HOH
218
B
HOH
59
5
HOH
HOH
219
B
HOH
62
5
HOH
HOH
220
B
HOH
63
5
HOH
HOH
221
B
HOH
65
5
HOH
HOH
222
B
HOH
66
5
HOH
HOH
223
B
HOH
67
5
HOH
HOH
224
B
HOH
68
5
HOH
HOH
225
B
HOH
69
5
HOH
HOH
226
B
HOH
70
5
HOH
HOH
227
B
HOH
71
5
HOH
HOH
228
B
HOH
72
5
HOH
HOH
229
B
n
1
50
A
n
2
51
A
n
3
52
A
n
4
53
A
n
5
54
A
n
6
55
A
n
7
56
A
SER
57
n
8
SER
57
A
PRO
58
n
9
PRO
58
A
GLY
59
n
10
GLY
59
A
ILE
60
n
11
ILE
60
A
TRP
61
n
12
TRP
61
A
GLN
62
n
13
GLN
62
A
LEU
63
n
14
LEU
63
A
ASP
64
n
15
ASP
64
A
CYS
65
n
16
CYS
65
A
THR
66
n
17
THR
66
A
HIS
67
n
18
HIS
67
A
LEU
68
n
19
LEU
68
A
GLU
69
n
20
GLU
69
A
GLY
70
n
21
GLY
70
A
LYS
71
n
22
LYS
71
A
VAL
72
n
23
VAL
72
A
ILE
73
n
24
ILE
73
A
LEU
74
n
25
LEU
74
A
VAL
75
n
26
VAL
75
A
ALA
76
n
27
ALA
76
A
VAL
77
n
28
VAL
77
A
HIS
78
n
29
HIS
78
A
VAL
79
n
30
VAL
79
A
ALA
80
n
31
ALA
80
A
SER
81
n
32
SER
81
A
GLY
82
n
33
GLY
82
A
TYR
83
n
34
TYR
83
A
ILE
84
n
35
ILE
84
A
GLU
85
n
36
GLU
85
A
ALA
86
n
37
ALA
86
A
GLU
87
n
38
GLU
87
A
VAL
88
n
39
VAL
88
A
ILE
89
n
40
ILE
89
A
PRO
90
n
41
PRO
90
A
ALA
91
n
42
ALA
91
A
GLU
92
n
43
GLU
92
A
THR
93
n
44
THR
93
A
GLY
94
n
45
GLY
94
A
GLN
95
n
46
GLN
95
A
GLU
96
n
47
GLU
96
A
THR
97
n
48
THR
97
A
ALA
98
n
49
ALA
98
A
TYR
99
n
50
TYR
99
A
PHE
100
n
51
PHE
100
A
LEU
101
n
52
LEU
101
A
LEU
102
n
53
LEU
102
A
LYS
103
n
54
LYS
103
A
LEU
104
n
55
LEU
104
A
ALA
105
n
56
ALA
105
A
GLY
106
n
57
GLY
106
A
ARG
107
n
58
ARG
107
A
TRP
108
n
59
TRP
108
A
PRO
109
n
60
PRO
109
A
VAL
110
n
61
VAL
110
A
LYS
111
n
62
LYS
111
A
THR
112
n
63
THR
112
A
VAL
113
n
64
VAL
113
A
HIS
114
n
65
HIS
114
A
THR
115
n
66
THR
115
A
ASP
116
n
67
ASP
116
A
ASN
117
n
68
ASN
117
A
GLY
118
n
69
GLY
118
A
SER
119
n
70
SER
119
A
ASN
120
n
71
ASN
120
A
PHE
121
n
72
PHE
121
A
THR
122
n
73
THR
122
A
SER
123
n
74
SER
123
A
THR
124
n
75
THR
124
A
THR
125
n
76
THR
125
A
VAL
126
n
77
VAL
126
A
LYS
127
n
78
LYS
127
A
ALA
128
n
79
ALA
128
A
ALA
129
n
80
ALA
129
A
CYS
130
n
81
CYS
130
A
ASP
131
n
82
ASP
131
A
TRP
132
n
83
TRP
132
A
ALA
133
n
84
ALA
133
A
GLY
134
n
85
GLY
134
A
ILE
135
n
86
ILE
135
A
LYS
136
n
87
LYS
136
A
GLN
137
n
88
GLN
137
A
GLU
138
n
89
GLU
138
A
ASP
139
n
90
ASP
139
A
GLY
140
n
91
GLY
140
A
ILE
141
n
92
ILE
141
A
PRO
142
n
93
PRO
142
A
n
94
143
A
n
95
144
A
n
96
145
A
n
97
146
A
n
98
147
A
n
99
148
A
n
100
149
A
n
101
150
A
n
102
151
A
n
103
152
A
SER
153
n
104
SER
153
A
MET
154
n
105
MET
154
A
ASN
155
n
106
ASN
155
A
LYS
156
n
107
LYS
156
A
GLU
157
n
108
GLU
157
A
LEU
158
n
109
LEU
158
A
LYS
159
n
110
LYS
159
A
LYS
160
n
111
LYS
160
A
ILE
161
n
112
ILE
161
A
ILE
162
n
113
ILE
162
A
GLY
163
n
114
GLY
163
A
GLN
164
n
115
GLN
164
A
VAL
165
n
116
VAL
165
A
ARG
166
n
117
ARG
166
A
ASP
167
n
118
ASP
167
A
GLN
168
n
119
GLN
168
A
ALA
169
n
120
ALA
169
A
GLU
170
n
121
GLU
170
A
HIS
171
n
122
HIS
171
A
LEU
172
n
123
LEU
172
A
LYS
173
n
124
LYS
173
A
THR
174
n
125
THR
174
A
ALA
175
n
126
ALA
175
A
VAL
176
n
127
VAL
176
A
GLN
177
n
128
GLN
177
A
MET
178
n
129
MET
178
A
ALA
179
n
130
ALA
179
A
VAL
180
n
131
VAL
180
A
PHE
181
n
132
PHE
181
A
ILE
182
n
133
ILE
182
A
HIS
183
n
134
HIS
183
A
ASN
184
n
135
ASN
184
A
HIS
185
n
136
HIS
185
A
LYS
186
n
137
LYS
186
A
ARG
187
n
138
ARG
187
A
LYS
188
n
139
LYS
188
A
GLY
189
n
140
GLY
189
A
GLY
190
n
141
GLY
190
A
ILE
191
n
142
ILE
191
A
GLY
192
n
143
GLY
192
A
GLY
193
n
144
GLY
193
A
TYR
194
n
145
TYR
194
A
SER
195
n
146
SER
195
A
ALA
196
n
147
ALA
196
A
GLY
197
n
148
GLY
197
A
GLU
198
n
149
GLU
198
A
ARG
199
n
150
ARG
199
A
ILE
200
n
151
ILE
200
A
VAL
201
n
152
VAL
201
A
ASP
202
n
153
ASP
202
A
ILE
203
n
154
ILE
203
A
ILE
204
n
155
ILE
204
A
ALA
205
n
156
ALA
205
A
THR
206
n
157
THR
206
A
ASP
207
n
158
ASP
207
A
n
159
208
A
n
160
209
A
n
161
210
A
n
162
211
A
n
163
212
A
n
1
50
B
n
2
51
B
n
3
52
B
n
4
53
B
n
5
54
B
n
6
55
B
n
7
56
B
SER
57
n
8
SER
57
B
PRO
58
n
9
PRO
58
B
GLY
59
n
10
GLY
59
B
ILE
60
n
11
ILE
60
B
TRP
61
n
12
TRP
61
B
GLN
62
n
13
GLN
62
B
LEU
63
n
14
LEU
63
B
ASP
64
n
15
ASP
64
B
CYS
65
n
16
CYS
65
B
THR
66
n
17
THR
66
B
HIS
67
n
18
HIS
67
B
LEU
68
n
19
LEU
68
B
GLU
69
n
20
GLU
69
B
GLY
70
n
21
GLY
70
B
LYS
71
n
22
LYS
71
B
VAL
72
n
23
VAL
72
B
ILE
73
n
24
ILE
73
B
LEU
74
n
25
LEU
74
B
VAL
75
n
26
VAL
75
B
ALA
76
n
27
ALA
76
B
VAL
77
n
28
VAL
77
B
HIS
78
n
29
HIS
78
B
VAL
79
n
30
VAL
79
B
ALA
80
n
31
ALA
80
B
SER
81
n
32
SER
81
B
GLY
82
n
33
GLY
82
B
TYR
83
n
34
TYR
83
B
ILE
84
n
35
ILE
84
B
GLU
85
n
36
GLU
85
B
ALA
86
n
37
ALA
86
B
GLU
87
n
38
GLU
87
B
VAL
88
n
39
VAL
88
B
ILE
89
n
40
ILE
89
B
PRO
90
n
41
PRO
90
B
ALA
91
n
42
ALA
91
B
GLU
92
n
43
GLU
92
B
THR
93
n
44
THR
93
B
GLY
94
n
45
GLY
94
B
GLN
95
n
46
GLN
95
B
GLU
96
n
47
GLU
96
B
THR
97
n
48
THR
97
B
ALA
98
n
49
ALA
98
B
TYR
99
n
50
TYR
99
B
PHE
100
n
51
PHE
100
B
LEU
101
n
52
LEU
101
B
LEU
102
n
53
LEU
102
B
LYS
103
n
54
LYS
103
B
LEU
104
n
55
LEU
104
B
ALA
105
n
56
ALA
105
B
GLY
106
n
57
GLY
106
B
ARG
107
n
58
ARG
107
B
TRP
108
n
59
TRP
108
B
PRO
109
n
60
PRO
109
B
VAL
110
n
61
VAL
110
B
LYS
111
n
62
LYS
111
B
THR
112
n
63
THR
112
B
VAL
113
n
64
VAL
113
B
HIS
114
n
65
HIS
114
B
THR
115
n
66
THR
115
B
ASP
116
n
67
ASP
116
B
ASN
117
n
68
ASN
117
B
GLY
118
n
69
GLY
118
B
SER
119
n
70
SER
119
B
ASN
120
n
71
ASN
120
B
PHE
121
n
72
PHE
121
B
THR
122
n
73
THR
122
B
SER
123
n
74
SER
123
B
THR
124
n
75
THR
124
B
THR
125
n
76
THR
125
B
VAL
126
n
77
VAL
126
B
LYS
127
n
78
LYS
127
B
ALA
128
n
79
ALA
128
B
ALA
129
n
80
ALA
129
B
CYS
130
n
81
CYS
130
B
ASP
131
n
82
ASP
131
B
TRP
132
n
83
TRP
132
B
ALA
133
n
84
ALA
133
B
GLY
134
n
85
GLY
134
B
ILE
135
n
86
ILE
135
B
LYS
136
n
87
LYS
136
B
GLN
137
n
88
GLN
137
B
GLU
138
n
89
GLU
138
B
n
90
139
B
n
91
140
B
n
92
141
B
n
93
142
B
n
94
143
B
n
95
144
B
n
96
145
B
n
97
146
B
n
98
147
B
n
99
148
B
GLY
149
n
100
GLY
149
B
VAL
150
n
101
VAL
150
B
ILE
151
n
102
ILE
151
B
GLU
152
n
103
GLU
152
B
SER
153
n
104
SER
153
B
MET
154
n
105
MET
154
B
ASN
155
n
106
ASN
155
B
LYS
156
n
107
LYS
156
B
GLU
157
n
108
GLU
157
B
LEU
158
n
109
LEU
158
B
LYS
159
n
110
LYS
159
B
LYS
160
n
111
LYS
160
B
ILE
161
n
112
ILE
161
B
ILE
162
n
113
ILE
162
B
GLY
163
n
114
GLY
163
B
GLN
164
n
115
GLN
164
B
VAL
165
n
116
VAL
165
B
ARG
166
n
117
ARG
166
B
ASP
167
n
118
ASP
167
B
GLN
168
n
119
GLN
168
B
ALA
169
n
120
ALA
169
B
GLU
170
n
121
GLU
170
B
HIS
171
n
122
HIS
171
B
LEU
172
n
123
LEU
172
B
LYS
173
n
124
LYS
173
B
THR
174
n
125
THR
174
B
ALA
175
n
126
ALA
175
B
VAL
176
n
127
VAL
176
B
GLN
177
n
128
GLN
177
B
MET
178
n
129
MET
178
B
ALA
179
n
130
ALA
179
B
VAL
180
n
131
VAL
180
B
PHE
181
n
132
PHE
181
B
ILE
182
n
133
ILE
182
B
HIS
183
n
134
HIS
183
B
ASN
184
n
135
ASN
184
B
HIS
185
n
136
HIS
185
B
LYS
186
n
137
LYS
186
B
ARG
187
n
138
ARG
187
B
LYS
188
n
139
LYS
188
B
GLY
189
n
140
GLY
189
B
GLY
190
n
141
GLY
190
B
ILE
191
n
142
ILE
191
B
GLY
192
n
143
GLY
192
B
GLY
193
n
144
GLY
193
B
TYR
194
n
145
TYR
194
B
SER
195
n
146
SER
195
B
ALA
196
n
147
ALA
196
B
GLY
197
n
148
GLY
197
B
GLU
198
n
149
GLU
198
B
ARG
199
n
150
ARG
199
B
ILE
200
n
151
ILE
200
B
VAL
201
n
152
VAL
201
B
ASP
202
n
153
ASP
202
B
ILE
203
n
154
ILE
203
B
ILE
204
n
155
ILE
204
B
ALA
205
n
156
ALA
205
B
THR
206
n
157
THR
206
B
ASP
207
n
158
ASP
207
B
ILE
208
n
159
ILE
208
B
n
160
209
B
n
161
210
B
n
162
211
B
n
163
212
B
author_and_software_defined_assembly
PISA
2
dimeric
2750
-14
12710
A
HOH
30
K
O
HOH
1_555
A
CD
1004
D
CD
CD
1_555
A
CYS
65
A
SG
CYS
16
1_555
164.8
A
HOH
30
K
O
HOH
1_555
A
CD
1004
D
CD
CD
1_555
A
GLU
92
A
OE1
GLU
43
1_555
77.9
A
CYS
65
A
SG
CYS
16
1_555
A
CD
1004
D
CD
CD
1_555
A
GLU
92
A
OE1
GLU
43
1_555
90.4
A
HOH
30
K
O
HOH
1_555
A
CD
1004
D
CD
CD
1_555
A
ASP
116
A
OD2
ASP
67
1_555
87.2
A
CYS
65
A
SG
CYS
16
1_555
A
CD
1004
D
CD
CD
1_555
A
ASP
116
A
OD2
ASP
67
1_555
105.2
A
GLU
92
A
OE1
GLU
43
1_555
A
CD
1004
D
CD
CD
1_555
A
ASP
116
A
OD2
ASP
67
1_555
163.9
A
CYS
65
A
SG
CYS
16
1_555
A
CD
1003
C
CD
CD
1_555
A
HIS
67
A
NE2
HIS
18
1_555
113.6
A
CYS
65
A
SG
CYS
16
1_555
A
CD
1003
C
CD
CD
1_555
A
GLU
92
A
OE2
GLU
43
1_555
115.1
A
HIS
67
A
NE2
HIS
18
1_555
A
CD
1003
C
CD
CD
1_555
A
GLU
92
A
OE2
GLU
43
1_555
88.7
B
HOH
3
L
O
HOH
1_555
B
CD
1001
H
CD
CD
1_555
B
CYS
65
B
SG
CYS
16
1_555
166.3
B
HOH
3
L
O
HOH
1_555
B
CD
1001
H
CD
CD
1_555
B
GLU
92
B
OE2
GLU
43
1_555
84.3
B
CYS
65
B
SG
CYS
16
1_555
B
CD
1001
H
CD
CD
1_555
B
GLU
92
B
OE2
GLU
43
1_555
91.6
B
HOH
3
L
O
HOH
1_555
B
CD
1001
H
CD
CD
1_555
B
ASP
116
B
OD2
ASP
67
1_555
82.0
B
CYS
65
B
SG
CYS
16
1_555
B
CD
1001
H
CD
CD
1_555
B
ASP
116
B
OD2
ASP
67
1_555
101.8
B
GLU
92
B
OE2
GLU
43
1_555
B
CD
1001
H
CD
CD
1_555
B
ASP
116
B
OD2
ASP
67
1_555
166.3
B
CYS
65
B
SG
CYS
16
1_555
B
CD
1002
I
CD
CD
1_555
B
HIS
67
B
NE2
HIS
18
1_555
114.4
B
CYS
65
B
SG
CYS
16
1_555
B
CD
1002
I
CD
CD
1_555
B
GLU
92
B
OE1
GLU
43
1_555
99.5
B
HIS
67
B
NE2
HIS
18
1_555
B
CD
1002
I
CD
CD
1_555
B
GLU
92
B
OE1
GLU
43
1_555
89.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
89
A
O
ILE
40
A
N
VAL
72
A
N
VAL
23
A
O
ILE
73
A
O
ILE
24
A
N
THR
66
A
N
THR
17
A
N
LEU
63
A
N
LEU
14
A
O
HIS
114
A
O
HIS
65
A
N
VAL
113
A
N
VAL
64
A
O
GLU
138
A
O
GLU
89
B
O
GLU
85
B
O
GLU
36
B
N
ALA
76
B
N
ALA
27
B
O
VAL
75
B
O
VAL
26
B
N
ASP
64
B
N
ASP
15
B
N
LEU
63
B
N
LEU
14
B
O
HIS
114
B
O
HIS
65
B
N
VAL
113
B
N
VAL
64
B
O
LYS
136
B
O
LYS
87
B
N
LYS
188
B
N
LYS
139
B
O
TYR
194
B
O
TYR
145
1
A
CG
GLN
95
A
CG
GLN
46
1
Y
1
A
CD
GLN
95
A
CD
GLN
46
1
Y
1
A
OE1
GLN
95
A
OE1
GLN
46
1
Y
1
A
NE2
GLN
95
A
NE2
GLN
46
1
Y
1
A
MET
50
A
MET
1
1
Y
1
A
HIS
51
A
HIS
2
1
Y
1
A
GLY
52
A
GLY
3
1
Y
1
A
GLN
53
A
GLN
4
1
Y
1
A
VAL
54
A
VAL
5
1
Y
1
A
ASP
55
A
ASP
6
1
Y
1
A
SER
56
A
SER
7
1
Y
1
A
TYR
143
A
TYR
94
1
Y
1
A
ASN
144
A
ASN
95
1
Y
1
A
PRO
145
A
PRO
96
1
Y
1
A
GLN
146
A
GLN
97
1
Y
1
A
SER
147
A
SER
98
1
Y
1
A
GLN
148
A
GLN
99
1
Y
1
A
GLY
149
A
GLY
100
1
Y
1
A
VAL
150
A
VAL
101
1
Y
1
A
ILE
151
A
ILE
102
1
Y
1
A
GLU
152
A
GLU
103
1
Y
1
A
ILE
208
A
ILE
159
1
Y
1
A
GLN
209
A
GLN
160
1
Y
1
A
THR
210
A
THR
161
1
Y
1
A
LYS
211
A
LYS
162
1
Y
1
A
GLU
212
A
GLU
163
1
Y
1
B
MET
50
B
MET
1
1
Y
1
B
HIS
51
B
HIS
2
1
Y
1
B
GLY
52
B
GLY
3
1
Y
1
B
GLN
53
B
GLN
4
1
Y
1
B
VAL
54
B
VAL
5
1
Y
1
B
ASP
55
B
ASP
6
1
Y
1
B
SER
56
B
SER
7
1
Y
1
B
ASP
139
B
ASP
90
1
Y
1
B
GLY
140
B
GLY
91
1
Y
1
B
ILE
141
B
ILE
92
1
Y
1
B
PRO
142
B
PRO
93
1
Y
1
B
TYR
143
B
TYR
94
1
Y
1
B
ASN
144
B
ASN
95
1
Y
1
B
PRO
145
B
PRO
96
1
Y
1
B
GLN
146
B
GLN
97
1
Y
1
B
SER
147
B
SER
98
1
Y
1
B
GLN
148
B
GLN
99
1
Y
1
B
GLN
209
B
GLN
160
1
Y
1
B
THR
210
B
THR
161
1
Y
1
B
LYS
211
B
LYS
162
1
Y
1
B
GLU
212
B
GLU
163
1
Y
1
A
B
CD
O
CD
HOH
1003
223
1.95
1_555
4_455
38.818
-0.33
0.00
0.00
2.64
0.00
-2.31
0.951
0.924
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26760
0.21635
0.21876
1.90
49.40
1234
24930
23602
5.0
99.67
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.165
0.161
0.80
0.80
1.40
PDB ENTRY 3L3U
MAXIMUM LIKELIHOOD
MASK
1.90
49.40
72
2270
39
0
2159
0.009
0.022
2235
1.374
1.952
3024
4.863
5.000
279
33.015
24.831
89
14.597
15.000
382
12.575
15.000
8
0.071
0.200
343
0.004
0.021
1637
0.001
0.020
421
0.204
0.200
462
0.186
0.200
1457
0.175
0.200
1071
0.083
0.200
1107
0.181
0.200
116
0.004
0.200
1
0.254
0.200
5
0.114
0.200
15
0.249
0.200
46
0.386
0.200
7
2.152
1.500
1390
0.184
1.500
585
3.119
2.000
2232
3.050
3.000
845
4.325
4.500
792
0.398
0.344
1.949
101
1706
20
99.83
1.9
62
3AO1
24972
24930
0.086
0.093
1
11
7
99.9
0.48
1.9
2.0
3.2
0.52
7
100
data collection
Blu-Ice
phasing
AMoRE
refinement
REFMAC
5.2.0019
data reduction
MOSFLM
data scaling
SCALA
N
Fragment-based approach to the design of ligands targeting a novel site in HIV-1 integrase
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
2
N
N
2
N
N
4
N
N
5
N
N
5
N
N
A
THR
93
A
THR
44
HELX_P
A
TRP
108
A
TRP
59
1
1
16
A
GLY
118
A
GLY
69
HELX_P
A
SER
123
A
SER
74
1
2
6
A
SER
123
A
SER
74
HELX_P
A
GLY
134
A
GLY
85
1
3
12
A
SER
153
A
SER
104
HELX_P
A
ARG
166
A
ARG
117
1
4
14
A
ASP
167
A
ASP
118
HELX_P
A
ALA
169
A
ALA
120
5
5
3
A
HIS
171
A
HIS
122
HELX_P
A
LYS
186
A
LYS
137
1
6
16
A
SER
195
A
SER
146
HELX_P
A
ALA
205
A
ALA
156
1
7
11
B
THR
93
B
THR
44
HELX_P
B
TRP
108
B
TRP
59
1
8
16
B
GLY
118
B
GLY
69
HELX_P
B
THR
122
B
THR
73
5
9
5
B
SER
123
B
SER
74
HELX_P
B
GLY
134
B
GLY
85
1
10
12
B
VAL
150
B
VAL
101
HELX_P
B
ARG
166
B
ARG
117
1
11
17
B
ASP
167
B
ASP
118
HELX_P
B
ALA
169
B
ALA
120
5
12
3
B
HIS
171
B
HIS
122
HELX_P
B
LYS
186
B
LYS
137
1
13
16
B
ALA
196
B
ALA
147
HELX_P
B
ILE
208
B
ILE
159
1
14
13
metalc
2.464
A
HOH
30
K
O
HOH
1_555
A
CD
1004
D
CD
CD
1_555
metalc
2.563
A
CYS
65
A
SG
CYS
16
1_555
A
CD
1003
C
CD
CD
1_555
metalc
2.618
A
CYS
65
A
SG
CYS
16
1_555
A
CD
1004
D
CD
CD
1_555
metalc
2.407
A
HIS
67
A
NE2
HIS
18
1_555
A
CD
1003
C
CD
CD
1_555
metalc
1.926
A
GLU
92
A
OE2
GLU
43
1_555
A
CD
1003
C
CD
CD
1_555
metalc
2.383
A
GLU
92
A
OE1
GLU
43
1_555
A
CD
1004
D
CD
CD
1_555
metalc
2.374
A
ASP
116
A
OD2
ASP
67
1_555
A
CD
1004
D
CD
CD
1_555
metalc
2.650
B
HOH
3
L
O
HOH
1_555
B
CD
1001
H
CD
CD
1_555
metalc
2.685
B
CYS
65
B
SG
CYS
16
1_555
B
CD
1001
H
CD
CD
1_555
metalc
2.588
B
CYS
65
B
SG
CYS
16
1_555
B
CD
1002
I
CD
CD
1_555
metalc
2.220
B
HIS
67
B
NE2
HIS
18
1_555
B
CD
1002
I
CD
CD
1_555
metalc
2.010
B
GLU
92
B
OE2
GLU
43
1_555
B
CD
1001
H
CD
CD
1_555
metalc
2.277
B
GLU
92
B
OE1
GLU
43
1_555
B
CD
1002
I
CD
CD
1_555
metalc
2.243
B
ASP
116
B
OD2
ASP
67
1_555
B
CD
1001
H
CD
CD
1_555
VIRAL PROTEIN/TRANSFERASE INHIBITOR
DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE, POLYNUCLEOTIDYL TRANSFERASE, DNA BINDING, VIRAL PROTEIN, RNaseH, Fragment binding, VIRAL PROTEIN-TRANSFERASE INHIBITOR complex
Q72498_9HIV1
UNP
1
765
Q72498
MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA
CWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQ
TKE
765
927
3AO1
50
212
Q72498
A
1
1
163
765
927
3AO1
50
212
Q72498
B
1
1
163
1
CYS
engineered mutation
SER
56
3AO1
A
Q72498
UNP
771
7
1
TRP
engineered mutation
ASP
131
3AO1
A
Q72498
UNP
846
82
1
PHE
engineered mutation
ASP
139
3AO1
A
Q72498
UNP
854
90
1
PHE
engineered mutation
HIS
185
3AO1
A
Q72498
UNP
900
136
2
CYS
engineered mutation
SER
56
3AO1
B
Q72498
UNP
771
7
2
TRP
engineered mutation
ASP
131
3AO1
B
Q72498
UNP
846
82
2
PHE
engineered mutation
ASP
139
3AO1
B
Q72498
UNP
854
90
2
PHE
engineered mutation
HIS
185
3AO1
B
Q72498
UNP
900
136
5
5
2
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
A
ILE
84
A
ILE
35
A
ILE
89
A
ILE
40
A
LYS
71
A
LYS
22
A
HIS
78
A
HIS
29
A
ILE
60
A
ILE
11
A
LEU
68
A
LEU
19
A
THR
112
A
THR
63
A
THR
115
A
THR
66
A
LYS
136
A
LYS
87
A
ASP
139
A
ASP
90
B
ILE
84
B
ILE
35
B
ILE
89
B
ILE
40
B
LYS
71
B
LYS
22
B
HIS
78
B
HIS
29
B
ILE
60
B
ILE
11
B
LEU
68
B
LEU
19
B
THR
112
B
THR
63
B
HIS
114
B
HIS
65
B
LYS
136
B
LYS
87
B
GLU
138
B
GLU
89
B
ARG
187
B
ARG
138
B
LYS
188
B
LYS
139
B
TYR
194
B
TYR
145
B
SER
195
B
SER
146
BINDING SITE FOR RESIDUE CD A 1003
A
CD
1003
Software
6
BINDING SITE FOR RESIDUE CD A 1004
A
CD
1004
Software
7
BINDING SITE FOR RESIDUE SO4 A 1
A
SO4
1
Software
9
BINDING SITE FOR RESIDUE BZX A 213
A
BZX
213
Software
9
BINDING SITE FOR RESIDUE BZX A 214
A
BZX
214
Software
4
BINDING SITE FOR RESIDUE CD B 1001
B
CD
1001
Software
6
BINDING SITE FOR RESIDUE CD B 1002
B
CD
1002
Software
5
BINDING SITE FOR RESIDUE BZX B 1
B
BZX
1
Software
12
A
CYS
65
A
CYS
16
6
1_555
A
HIS
67
A
HIS
18
6
1_555
A
GLU
92
A
GLU
43
6
1_555
A
CD
1004
D
CD
6
1_555
B
ASP
131
B
ASP
82
6
4_455
B
HOH
223
L
HOH
6
4_455
A
HOH
4
K
HOH
7
1_555
A
HOH
30
K
HOH
7
1_555
A
CYS
65
A
CYS
16
7
1_555
A
GLU
92
A
GLU
43
7
1_555
A
ASP
116
A
ASP
67
7
1_555
A
CD
1003
C
CD
7
1_555
B
ASP
131
B
ASP
82
7
4_455
A
HOH
11
K
HOH
9
1_555
A
GLU
69
A
GLU
20
9
1_555
A
LYS
71
A
LYS
22
9
1_555
A
ARG
166
A
ARG
117
9
1_555
A
GLU
170
A
GLU
121
9
1_555
A
HIS
171
A
HIS
122
9
1_555
A
LEU
172
A
LEU
123
9
1_555
A
ARG
187
A
ARG
138
9
4_455
A
HOH
221
K
HOH
9
1_555
A
HOH
31
K
HOH
9
1_555
A
TYR
83
A
TYR
34
9
1_555
A
ASN
184
A
ASN
135
9
1_555
A
HIS
185
A
HIS
136
9
1_555
A
GLY
197
A
GLY
148
9
1_555
A
VAL
201
A
VAL
152
9
1_555
B
GLY
106
B
GLY
57
9
1_555
B
ARG
107
B
ARG
58
9
1_555
B
PRO
109
B
PRO
60
9
1_555
A
HOH
9
K
HOH
4
1_555
A
GLY
70
A
GLY
21
4
4_555
A
HIS
185
A
HIS
136
4
1_555
B
PRO
109
B
PRO
60
4
1_555
B
HOH
3
L
HOH
6
1_555
B
CYS
65
B
CYS
16
6
1_555
B
GLU
92
B
GLU
43
6
1_555
B
ASP
116
B
ASP
67
6
1_555
B
HOH
213
L
HOH
6
1_555
B
CD
1002
I
CD
6
1_555
B
CYS
65
B
CYS
16
5
1_555
B
HIS
67
B
HIS
18
5
1_555
B
GLU
92
B
GLU
43
5
1_555
B
HOH
224
L
HOH
5
1_555
B
CD
1001
H
CD
5
1_555
A
GLY
106
A
GLY
57
12
1_555
A
ARG
107
A
ARG
58
12
1_555
A
TRP
108
A
TRP
59
12
1_555
A
PRO
109
A
PRO
60
12
1_555
B
HOH
22
L
HOH
12
1_555
B
HOH
36
L
HOH
12
1_555
B
TYR
83
B
TYR
34
12
1_555
B
ASN
184
B
ASN
135
12
1_555
B
HIS
185
B
HIS
136
12
1_555
B
GLY
197
B
GLY
148
12
1_555
B
GLU
198
B
GLU
149
12
1_555
B
HOH
225
L
HOH
12
1_555
19
P 21 21 21