0.009051
0.000000
0.000000
0.000000
0.009051
0.000000
0.000000
0.000000
0.004896
0.00000
0.00000
0.00000
Watanabe, N.
James, M.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
110.486
110.486
204.242
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C14 H22 N3 O7 P
375.314
n
(2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid
N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
411
649
660
10.1016/j.jmb.2011.06.023
21722650
The Structure of ll-Diaminopimelate Aminotransferase from Chlamydia trachomatis: Implications for Its Broad Substrate Specificity.
2011
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-09-16
MARMOSAIC 300 mm CCD
ACCEL/BRUKER double crystal monochromator (DCM)
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
08ID-1
CLSI
0.97949
SYNCHROTRON
CLSI BEAMLINE 08ID-1
44940.762
LL-diaminopimelate aminotransferase
2.6.1.83
1
man
polymer
18.015
water
39
nat
water
LL-DAP-aminotransferase
no
yes
MKRNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPAL
RQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE
DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFS(LLP)
PLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATG
FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQSHH
HHHH
MKRNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPAL
RQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE
DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF
AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATGFEVF
GGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQSHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
400
dapL, aspC, CT_390
813
Chlamydia trachomatis
562
Escherichia coli
Biological sequence
1
3.49
64.71
VAPOR DIFFUSION, SITTING DROP
7.5
10% PEG6000, 2.0M NaCl, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
298.0
atom_site
entity
entity_name_com
entity_poly
entity_poly_seq
entity_src_gen
pdbx_distant_solvent_atoms
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_poly_seq_scheme
pdbx_struct_assembly_gen
pdbx_struct_mod_residue
pdbx_struct_special_symmetry
pdbx_unobs_or_zero_occ_residues
pdbx_validate_torsion
struct_asym
struct_conn
struct_ref_seq_dif
repository
Initial release
Advisory
Atomic model
Data collection
Database references
Derived calculations
Polymer sequence
Source and taxonomy
Structure summary
1
0
2011-08-31
2
0
2020-04-15
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.group_PDB
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.type_symbol
_entity_name_com.name
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly_seq.mon_id
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.pdbx_seq_type
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
PDBJ
Y
PDBJ
2010-12-10
REL
REL
1
A
O
HOH
427
5.92
1
A
O
HOH
429
7.96
1
A
O
HOH
430
6.73
1
A
O
HOH
435
7.85
1
A
O
HOH
436
7.28
1
A
O
HOH
440
10.23
HOH
water
HOH
2
2
HOH
HOH
402
A
HOH
3
2
HOH
HOH
403
A
HOH
4
2
HOH
HOH
404
A
HOH
5
2
HOH
HOH
405
A
HOH
6
2
HOH
HOH
406
A
HOH
7
2
HOH
HOH
407
A
HOH
8
2
HOH
HOH
408
A
HOH
10
2
HOH
HOH
409
A
HOH
12
2
HOH
HOH
410
A
HOH
13
2
HOH
HOH
411
A
HOH
15
2
HOH
HOH
412
A
HOH
19
2
HOH
HOH
413
A
HOH
20
2
HOH
HOH
414
A
HOH
24
2
HOH
HOH
415
A
HOH
25
2
HOH
HOH
416
A
HOH
26
2
HOH
HOH
417
A
HOH
30
2
HOH
HOH
418
A
HOH
32
2
HOH
HOH
419
A
HOH
35
2
HOH
HOH
420
A
HOH
37
2
HOH
HOH
421
A
HOH
38
2
HOH
HOH
422
A
HOH
40
2
HOH
HOH
423
A
HOH
42
2
HOH
HOH
424
A
HOH
47
2
HOH
HOH
425
A
HOH
51
2
HOH
HOH
426
A
HOH
53
2
HOH
HOH
427
A
HOH
54
2
HOH
HOH
428
A
HOH
55
2
HOH
HOH
429
A
HOH
58
2
HOH
HOH
430
A
HOH
59
2
HOH
HOH
431
A
HOH
60
2
HOH
HOH
432
A
HOH
61
2
HOH
HOH
433
A
HOH
62
2
HOH
HOH
434
A
HOH
63
2
HOH
HOH
435
A
HOH
64
2
HOH
HOH
436
A
HOH
65
2
HOH
HOH
437
A
HOH
66
2
HOH
HOH
438
A
HOH
67
2
HOH
HOH
439
A
HOH
68
2
HOH
HOH
440
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
ARG
3
n
3
ARG
3
A
ASN
4
n
4
ASN
4
A
PRO
5
n
5
PRO
5
A
HIS
6
n
6
HIS
6
A
PHE
7
n
7
PHE
7
A
VAL
8
n
8
VAL
8
A
SER
9
n
9
SER
9
A
LEU
10
n
10
LEU
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
PHE
16
n
16
PHE
16
A
ALA
17
n
17
ALA
17
A
ASP
18
n
18
ASP
18
A
LEU
19
n
19
LEU
19
A
GLN
20
n
20
GLN
20
A
LYS
21
n
21
LYS
21
A
ARG
22
n
22
ARG
22
A
VAL
23
n
23
VAL
23
A
ALA
24
n
24
ALA
24
A
GLN
25
n
25
GLN
25
A
PHE
26
n
26
PHE
26
A
ARG
27
n
27
ARG
27
A
LEU
28
n
28
LEU
28
A
GLU
29
n
29
GLU
29
A
ASN
30
n
30
ASN
30
A
PRO
31
n
31
PRO
31
A
ALA
32
n
32
GLN
32
A
n
33
33
A
n
34
34
A
VAL
35
n
35
VAL
35
A
ILE
36
n
36
ILE
36
A
ASN
37
n
37
ASN
37
A
LEU
38
n
38
LEU
38
A
SER
39
n
39
SER
39
A
ILE
40
n
40
ILE
40
A
GLY
41
n
41
GLY
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
PRO
46
n
46
PRO
46
A
LEU
47
n
47
LEU
47
A
ASN
48
n
48
ASN
48
A
ALA
49
n
49
ALA
49
A
SER
50
n
50
SER
50
A
VAL
51
n
51
VAL
51
A
ALA
52
n
52
ALA
52
A
GLU
53
n
53
GLU
53
A
ALA
54
n
54
ALA
54
A
PHE
55
n
55
PHE
55
A
ALA
56
n
56
ALA
56
A
SER
57
n
57
SER
57
A
SER
58
n
58
SER
58
A
ILE
59
n
59
ILE
59
A
ALA
60
n
60
ALA
60
A
ARG
61
n
61
ARG
61
A
LEU
62
n
62
LEU
62
A
SER
63
n
63
SER
63
A
SER
64
n
64
SER
64
A
PRO
65
n
65
PRO
65
A
THR
66
n
66
THR
66
A
n
67
67
A
n
68
68
A
n
69
69
A
n
70
70
A
n
71
71
A
n
72
72
A
n
73
73
A
ASP
74
n
74
ASP
74
A
PHE
75
n
75
PHE
75
A
GLY
76
n
76
GLY
76
A
LEU
77
n
77
LEU
77
A
PRO
78
n
78
PRO
78
A
ALA
79
n
79
ALA
79
A
LEU
80
n
80
LEU
80
A
ARG
81
n
81
ARG
81
A
GLN
82
n
82
GLN
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
GLU
86
n
86
GLU
86
A
ASP
87
n
87
ASP
87
A
PHE
88
n
88
PHE
88
A
TYR
89
n
89
TYR
89
A
ARG
90
n
90
ARG
90
A
GLY
91
n
91
GLY
91
A
PHE
92
n
92
PHE
92
A
VAL
93
n
93
VAL
93
A
ASP
94
n
94
ASP
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
GLU
97
n
97
GLU
97
A
ILE
98
n
98
ILE
98
A
PHE
99
n
99
PHE
99
A
ILE
100
n
100
ILE
100
A
SER
101
n
101
SER
101
A
ASP
102
n
102
ASP
102
A
GLY
103
n
103
GLY
103
A
ALA
104
n
104
ALA
104
A
LYS
105
n
105
LYS
105
A
VAL
106
n
106
VAL
106
A
ASP
107
n
107
ASP
107
A
LEU
108
n
108
LEU
108
A
PHE
109
n
109
PHE
109
A
ARG
110
n
110
ARG
110
A
LEU
111
n
111
LEU
111
A
LEU
112
n
112
LEU
112
A
SER
113
n
113
SER
113
A
PHE
114
n
114
PHE
114
A
PHE
115
n
115
PHE
115
A
GLY
116
n
116
GLY
116
A
PRO
117
n
117
PRO
117
A
ASN
118
n
118
ASN
118
A
GLN
119
n
119
GLN
119
A
THR
120
n
120
THR
120
A
VAL
121
n
121
VAL
121
A
ALA
122
n
122
ALA
122
A
ILE
123
n
123
ILE
123
A
GLN
124
n
124
GLN
124
A
ASP
125
n
125
ASP
125
A
PRO
126
n
126
PRO
126
A
SER
127
n
127
SER
127
A
TYR
128
n
128
TYR
128
A
PRO
129
n
129
PRO
129
A
ALA
130
n
130
ALA
130
A
TYR
131
n
131
TYR
131
A
LEU
132
n
132
LEU
132
A
ASP
133
n
133
ASP
133
A
ILE
134
n
134
ILE
134
A
ALA
135
n
135
ALA
135
A
ARG
136
n
136
ARG
136
A
LEU
137
n
137
LEU
137
A
THR
138
n
138
THR
138
A
GLY
139
n
139
GLY
139
A
ALA
140
n
140
ALA
140
A
LYS
141
n
141
LYS
141
A
GLU
142
n
142
GLU
142
A
ILE
143
n
143
ILE
143
A
ILE
144
n
144
ILE
144
A
ALA
145
n
145
ALA
145
A
LEU
146
n
146
LEU
146
A
PRO
147
n
147
PRO
147
A
CYS
148
n
148
CYS
148
A
LEU
149
n
149
LEU
149
A
GLN
150
n
150
GLN
150
A
GLU
151
n
151
GLU
151
A
ASN
152
n
152
ASN
152
A
ALA
153
n
153
ALA
153
A
PHE
154
n
154
PHE
154
A
PHE
155
n
155
PHE
155
A
PRO
156
n
156
PRO
156
A
GLU
157
n
157
GLU
157
A
PHE
158
n
158
PHE
158
A
PRO
159
n
159
PRO
159
A
GLU
160
n
160
GLU
160
A
ASP
161
n
161
ASP
161
A
THR
162
n
162
THR
162
A
HIS
163
n
163
HIS
163
A
ILE
164
n
164
ILE
164
A
ASP
165
n
165
ASP
165
A
ILE
166
n
166
ILE
166
A
LEU
167
n
167
LEU
167
A
CYS
168
n
168
CYS
168
A
LEU
169
n
169
LEU
169
A
CYS
170
n
170
CYS
170
A
SER
171
n
171
SER
171
A
PRO
172
n
172
PRO
172
A
ASN
173
n
173
ASN
173
A
ASN
174
n
174
ASN
174
A
PRO
175
n
175
PRO
175
A
THR
176
n
176
THR
176
A
GLY
177
n
177
GLY
177
A
THR
178
n
178
THR
178
A
VAL
179
n
179
VAL
179
A
LEU
180
n
180
LEU
180
A
ASN
181
n
181
ASN
181
A
LYS
182
n
182
LYS
182
A
ASP
183
n
183
ASP
183
A
GLN
184
n
184
GLN
184
A
LEU
185
n
185
LEU
185
A
ARG
186
n
186
ARG
186
A
ALA
187
n
187
ALA
187
A
ILE
188
n
188
ILE
188
A
VAL
189
n
189
VAL
189
A
HIS
190
n
190
HIS
190
A
TYR
191
n
191
TYR
191
A
ALA
192
n
192
ALA
192
A
ILE
193
n
193
ILE
193
A
GLU
194
n
194
GLU
194
A
HIS
195
n
195
HIS
195
A
GLU
196
n
196
GLU
196
A
ILE
197
n
197
ILE
197
A
LEU
198
n
198
LEU
198
A
ILE
199
n
199
ILE
199
A
LEU
200
n
200
LEU
200
A
PHE
201
n
201
PHE
201
A
ASP
202
n
202
ASP
202
A
ALA
203
n
203
ALA
203
A
ALA
204
n
204
ALA
204
A
TYR
205
n
205
TYR
205
A
SER
206
n
206
SER
206
A
THR
207
n
207
THR
207
A
PHE
208
n
208
PHE
208
A
ILE
209
n
209
ILE
209
A
SER
210
n
210
SER
210
A
ASP
211
n
211
ASP
211
A
PRO
212
n
212
PRO
212
A
SER
213
n
213
SER
213
A
LEU
214
n
214
LEU
214
A
PRO
215
n
215
PRO
215
A
LYS
216
n
216
LYS
216
A
SER
217
n
217
SER
217
A
ILE
218
n
218
ILE
218
A
PHE
219
n
219
PHE
219
A
GLU
220
n
220
GLU
220
A
ILE
221
n
221
ILE
221
A
PRO
222
n
222
PRO
222
A
ASP
223
n
223
ASP
223
A
ALA
224
n
224
ALA
224
A
ARG
225
n
225
ARG
225
A
PHE
226
n
226
PHE
226
A
CYS
227
n
227
CYS
227
A
ALA
228
n
228
ALA
228
A
ILE
229
n
229
ILE
229
A
GLU
230
n
230
GLU
230
A
ILE
231
n
231
ILE
231
A
ASN
232
n
232
ASN
232
A
SER
233
n
233
SER
233
A
PHE
234
n
234
PHE
234
A
SER
235
n
235
SER
235
A
LLP
400
n
236
LLP
236
A
PRO
237
n
237
PRO
237
A
LEU
238
n
238
LEU
238
A
GLY
239
n
239
GLY
239
A
PHE
240
n
240
PHE
240
A
ALA
241
n
241
ALA
241
A
GLY
242
n
242
GLY
242
A
ILE
243
n
243
ILE
243
A
ARG
244
n
244
ARG
244
A
LEU
245
n
245
LEU
245
A
GLY
246
n
246
GLY
246
A
TRP
247
n
247
TRP
247
A
THR
248
n
248
THR
248
A
VAL
249
n
249
VAL
249
A
ILE
250
n
250
ILE
250
A
PRO
251
n
251
PRO
251
A
GLN
252
n
252
GLN
252
A
GLU
253
n
253
GLU
253
A
LEU
254
n
254
LEU
254
A
THR
255
n
255
THR
255
A
TYR
256
n
256
TYR
256
A
ALA
257
n
257
ALA
257
A
ASP
258
n
258
ASP
258
A
GLY
259
n
259
GLY
259
A
HIS
260
n
260
HIS
260
A
PHE
261
n
261
PHE
261
A
VAL
262
n
262
VAL
262
A
ILE
263
n
263
ILE
263
A
GLN
264
n
264
GLN
264
A
ASP
265
n
265
ASP
265
A
TRP
266
n
266
TRP
266
A
GLU
267
n
267
GLU
267
A
ARG
268
n
268
ARG
268
A
PHE
269
n
269
PHE
269
A
LEU
270
n
270
LEU
270
A
SER
271
n
271
SER
271
A
THR
272
n
272
THR
272
A
THR
273
n
273
THR
273
A
PHE
274
n
274
PHE
274
A
ASN
275
n
275
ASN
275
A
GLY
276
n
276
GLY
276
A
ALA
277
n
277
ALA
277
A
SER
278
n
278
SER
278
A
ILE
279
n
279
ILE
279
A
PRO
280
n
280
PRO
280
A
ALA
281
n
281
ALA
281
A
GLN
282
n
282
GLN
282
A
GLU
283
n
283
GLU
283
A
ALA
284
n
284
ALA
284
A
GLY
285
n
285
GLY
285
A
VAL
286
n
286
VAL
286
A
ALA
287
n
287
ALA
287
A
GLY
288
n
288
GLY
288
A
LEU
289
n
289
LEU
289
A
SER
290
n
290
SER
290
A
ILE
291
n
291
ILE
291
A
LEU
292
n
292
LEU
292
A
PRO
293
n
293
PRO
293
A
GLN
294
n
294
GLN
294
A
LEU
295
n
295
LEU
295
A
GLU
296
n
296
GLU
296
A
ALA
297
n
297
ALA
297
A
ILE
298
n
298
ILE
298
A
HIS
299
n
299
HIS
299
A
TYR
300
n
300
TYR
300
A
TYR
301
n
301
TYR
301
A
ARG
302
n
302
ARG
302
A
GLU
303
n
303
GLU
303
A
ASN
304
n
304
ASN
304
A
SER
305
n
305
SER
305
A
ASP
306
n
306
ASP
306
A
LEU
307
n
307
LEU
307
A
LEU
308
n
308
LEU
308
A
ARG
309
n
309
ARG
309
A
LYS
310
n
310
LYS
310
A
ALA
311
n
311
ALA
311
A
LEU
312
n
312
LEU
312
A
LEU
313
n
313
LEU
313
A
ALA
314
n
314
ALA
314
A
THR
315
n
315
THR
315
A
GLY
316
n
316
GLY
316
A
PHE
317
n
317
PHE
317
A
GLU
318
n
318
GLU
318
A
VAL
319
n
319
VAL
319
A
PHE
320
n
320
PHE
320
A
GLY
321
n
321
GLY
321
A
GLY
322
n
322
GLY
322
A
GLU
323
n
323
GLU
323
A
HIS
324
n
324
HIS
324
A
ALA
325
n
325
ALA
325
A
PRO
326
n
326
PRO
326
A
TYR
327
n
327
TYR
327
A
LEU
328
n
328
LEU
328
A
TRP
329
n
329
TRP
329
A
VAL
330
n
330
VAL
330
A
LYS
331
n
331
LYS
331
A
PRO
332
n
332
PRO
332
A
n
333
333
A
n
334
334
A
n
335
335
A
n
336
336
A
n
337
337
A
n
338
338
A
ASP
339
n
339
ASP
339
A
ARG
340
n
340
ARG
340
A
ASP
341
n
341
ASP
341
A
LEU
342
n
342
LEU
342
A
PHE
343
n
343
PHE
343
A
ASP
344
n
344
ASP
344
A
PHE
345
n
345
PHE
345
A
PHE
346
n
346
PHE
346
A
LEU
347
n
347
LEU
347
A
ARG
348
n
348
ARG
348
A
GLU
349
n
349
GLU
349
A
TYR
350
n
350
TYR
350
A
HIS
351
n
351
HIS
351
A
ILE
352
n
352
ILE
352
A
ALA
353
n
353
ALA
353
A
ILE
354
n
354
ILE
354
A
THR
355
n
355
THR
355
A
PRO
356
n
356
PRO
356
A
GLY
357
n
357
GLY
357
A
ILE
358
n
358
ILE
358
A
GLY
359
n
359
GLY
359
A
PHE
360
n
360
PHE
360
A
GLY
361
n
361
GLY
361
A
ARG
362
n
362
ARG
362
A
SER
363
n
363
SER
363
A
GLY
364
n
364
GLY
364
A
SER
365
n
365
SER
365
A
GLY
366
n
366
GLY
366
A
PHE
367
n
367
PHE
367
A
VAL
368
n
368
VAL
368
A
ARG
369
n
369
ARG
369
A
PHE
370
n
370
PHE
370
A
SER
371
n
371
SER
371
A
SER
372
n
372
SER
372
A
LEU
373
n
373
LEU
373
A
GLY
374
n
374
GLY
374
A
LYS
375
n
375
LYS
375
A
ARG
376
n
376
ARG
376
A
GLU
377
n
377
GLU
377
A
ASP
378
n
378
ASP
378
A
ILE
379
n
379
ILE
379
A
LEU
380
n
380
LEU
380
A
ALA
381
n
381
ALA
381
A
ALA
382
n
382
ALA
382
A
CYS
383
n
383
CYS
383
A
GLU
384
n
384
GLU
384
A
ARG
385
n
385
ARG
385
A
LEU
386
n
386
LEU
386
A
GLN
387
n
387
GLN
387
A
MET
388
n
388
MET
388
A
n
389
389
A
n
390
390
A
n
391
391
A
n
392
392
A
n
393
393
A
n
394
394
A
n
395
395
A
n
396
396
A
n
397
397
A
n
398
398
A
n
399
399
A
n
400
400
A
author_and_software_defined_assembly
PISA
2
dimeric
4680
-29
29980
A
LLP
236
modified residue
A
LLP
236
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
x,-y+1/2,-z+1/4
crystal symmetry operation
0.0000000000
55.2430000000
51.0605000000
A
N
ILE
36
A
N
ILE
36
A
O
ALA
353
A
O
ALA
353
A
N
PHE
99
A
N
PHE
99
A
O
THR
248
A
O
THR
248
A
O
VAL
249
A
O
VAL
249
A
N
GLU
230
A
N
GLU
230
A
O
ILE
229
A
O
ILE
229
A
N
ILE
199
A
N
ILE
199
A
O
LEU
200
A
O
LEU
200
A
N
LEU
167
A
N
LEU
167
A
O
CYS
168
A
O
CYS
168
A
N
ALA
122
A
N
ALA
122
A
N
ASP
125
A
N
ASP
125
A
O
LEU
146
A
O
LEU
146
A
N
PHE
320
A
N
PHE
320
A
O
TRP
329
A
O
TRP
329
A
N
VAL
330
A
N
VAL
330
A
O
VAL
368
A
O
VAL
368
A
O
ARG
369
A
O
ARG
369
A
N
THR
355
A
N
THR
355
1
A
HOH
404
B
HOH
1
A
HOH
419
B
HOH
1
A
CG
GLN
32
A
CG
GLN
32
1
Y
1
A
CD
GLN
32
A
CD
GLN
32
1
Y
1
A
OE1
GLN
32
A
OE1
GLN
32
1
Y
1
A
NE2
GLN
32
A
NE2
GLN
32
1
Y
1
A
THR
11
A
THR
11
1
Y
1
A
LYS
12
A
LYS
12
1
Y
1
A
ASN
13
A
ASN
13
1
Y
1
A
TYR
14
A
TYR
14
1
Y
1
A
LEU
15
A
LEU
15
1
Y
1
A
HIS
33
A
HIS
33
1
Y
1
A
THR
34
A
THR
34
1
Y
1
A
ASP
42
A
ASP
42
1
Y
1
A
THR
43
A
THR
43
1
Y
1
A
THR
44
A
THR
44
1
Y
1
A
GLN
45
A
GLN
45
1
Y
1
A
THR
67
A
THR
67
1
Y
1
A
CYS
68
A
CYS
68
1
Y
1
A
ARG
69
A
ARG
69
1
Y
1
A
GLY
70
A
GLY
70
1
Y
1
A
TYR
71
A
TYR
71
1
Y
1
A
GLY
72
A
GLY
72
1
Y
1
A
PRO
73
A
PRO
73
1
Y
1
A
THR
333
A
THR
333
1
Y
1
A
GLN
334
A
GLN
334
1
Y
1
A
ALA
335
A
ALA
335
1
Y
1
A
ASN
336
A
ASN
336
1
Y
1
A
ILE
337
A
ILE
337
1
Y
1
A
SER
338
A
SER
338
1
Y
1
A
ALA
389
A
ALA
389
1
Y
1
A
PRO
390
A
PRO
390
1
Y
1
A
ALA
391
A
ALA
391
1
Y
1
A
LEU
392
A
LEU
392
1
Y
1
A
GLN
393
A
GLN
393
1
Y
1
A
SER
394
A
SER
394
1
Y
1
A
HIS
395
A
HIS
395
1
Y
1
A
HIS
396
A
HIS
396
1
Y
1
A
HIS
397
A
HIS
397
1
Y
1
A
HIS
398
A
HIS
398
1
Y
1
A
HIS
399
A
HIS
399
1
Y
1
A
HIS
400
A
HIS
400
1
Y
1
A
HIS
6
-54.21
-7.15
1
A
VAL
8
-85.39
38.86
1
A
SER
9
-144.39
32.68
1
A
ASP
18
85.11
-55.85
1
A
ARG
22
-69.91
1.41
1
A
LEU
28
-67.45
3.31
1
A
PRO
31
-52.36
-8.15
1
A
ILE
40
-174.43
-176.07
1
A
SER
63
-79.68
26.81
1
A
PHE
114
-29.69
-44.75
1
A
ASP
223
88.09
-5.78
1
A
CYS
227
-148.22
23.62
1
A
PHE
234
-78.51
-82.04
1
A
SER
235
26.88
-66.01
1
A
LLP
236
-104.47
53.88
1
A
LEU
238
-99.18
-149.51
1
A
GLN
294
-156.72
-83.69
1
A
LEU
295
9.19
93.91
1
A
ALA
297
-51.55
0.88
1
A
PRO
326
-88.65
35.97
1
A
ARG
340
-56.99
-1.70
1
A
ILE
358
-49.58
-10.22
1
A
SER
365
-38.23
123.58
1
A
ARG
385
-55.74
37.24
1
A
LEU
386
-147.13
39.02
1
A
GLN
387
-120.37
-97.94
79.910
-1.00
0.00
0.00
-1.00
0.00
2.00
0.941
0.914
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.28699
0.22223
0.22521
2.70
40.00
900
16706
5.1
99.08
11.614
0.238
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.331
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.70
40.00
39
2926
24
0
2863
0.020
0.022
2960
2.087
1.969
4014
8.161
5.000
358
36.706
23.381
139
22.438
15.000
462
18.632
15.000
20
0.137
0.200
440
0.011
0.021
2278
1.013
1.500
1814
1.934
2.000
2915
2.656
3.000
1146
4.437
4.500
1099
0.455
0.313
2.770
71
1198
20
99.84
2.70
40.0
3ASB
17651
0.053
1
35.8
8.1
2.70
2.80
3.3
1733
0.675
1
8.2
data collection
MXDS
phasing
PHASER
refinement
REFMAC
5.5.0055
data reduction
HKL-2000
data scaling
HKL-2000
LL-diaminopimelate aminotransferase (E.C.2.6.1.83)
Crystal structure of PLP-bound LL-diaminopimelate aminotransferase from Chlamydia trachomatis
1
N
N
2
N
N
A
ASN
4
A
ASN
4
HELX_P
A
VAL
8
A
VAL
8
5
1
5
A
GLN
20
A
GLN
20
HELX_P
A
LEU
28
A
LEU
28
1
2
9
A
ASN
48
A
ASN
48
HELX_P
A
SER
63
A
SER
63
1
3
16
A
LEU
77
A
LEU
77
HELX_P
A
PHE
88
A
PHE
88
1
4
12
A
ASP
94
A
ASP
94
HELX_P
A
LYS
96
A
LYS
96
5
5
3
A
GLY
103
A
GLY
103
HELX_P
A
PHE
115
A
PHE
115
1
6
13
A
TYR
128
A
TYR
128
HELX_P
A
GLY
139
A
GLY
139
1
7
12
A
LEU
149
A
LEU
149
HELX_P
A
ALA
153
A
ALA
153
5
8
5
A
ASN
181
A
ASN
181
HELX_P
A
HIS
195
A
HIS
195
1
9
15
A
TYR
205
A
TYR
205
HELX_P
A
ILE
209
A
ILE
209
5
10
5
A
SER
217
A
SER
217
HELX_P
A
ILE
221
A
ILE
221
5
11
5
A
ASP
223
A
ASP
223
HELX_P
A
PHE
226
A
PHE
226
5
12
4
A
PHE
261
A
PHE
261
HELX_P
A
PHE
274
A
PHE
274
1
13
14
A
SER
278
A
SER
278
HELX_P
A
LEU
292
A
LEU
292
1
14
15
A
LEU
295
A
LEU
295
HELX_P
A
THR
315
A
THR
315
1
15
21
A
ARG
340
A
ARG
340
HELX_P
A
HIS
351
A
HIS
351
1
16
12
A
ILE
358
A
ILE
358
HELX_P
A
PHE
360
A
PHE
360
5
17
3
A
GLY
361
A
GLY
361
HELX_P
A
SER
365
A
SER
365
5
18
5
A
LYS
375
A
LYS
375
HELX_P
A
ARG
385
A
ARG
385
1
19
11
covale
1.340
both
A
SER
235
A
C
SER
235
1_555
A
LLP
236
A
N
LLP
236
1_555
covale
1.359
both
A
PRO
237
A
N
PRO
237
1_555
A
LLP
236
A
C
LLP
236
1_555
TRANSFERASE
PLP dependent aminotransferase, TRANSFERASE
A
PHE
16
A
PHE
16
1
A
ALA
17
A
ALA
17
-0.24
A
ALA
17
A
ALA
17
1
A
ASP
18
A
ASP
18
10.03
A
ASP
125
A
ASP
125
1
A
PRO
126
A
PRO
126
4.76
A
GLU
160
A
GLU
160
1
A
ASP
161
A
ASP
161
-16.33
A
SER
171
A
SER
171
1
A
PRO
172
A
PRO
172
-5.75
A
ASN
174
A
ASN
174
1
A
PRO
175
A
PRO
175
25.31
A
PRO
237
A
PRO
237
1
A
LEU
238
A
LEU
238
-12.65
DAPAT_CHLTR
UNP
1
1
O84395
MKRNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPAL
RQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE
DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF
AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATGFEVF
GGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAACERLQMAPALQS
1
394
3ASB
1
394
O84395
A
1
1
394
1
expression tag
HIS
395
3ASB
A
O84395
UNP
395
1
expression tag
HIS
396
3ASB
A
O84395
UNP
396
1
expression tag
HIS
397
3ASB
A
O84395
UNP
397
1
expression tag
HIS
398
3ASB
A
O84395
UNP
398
1
expression tag
HIS
399
3ASB
A
O84395
UNP
399
1
expression tag
HIS
400
3ASB
A
O84395
UNP
400
2
7
4
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
36
A
ILE
36
A
ASN
37
A
ASN
37
A
ILE
352
A
ILE
352
A
ALA
353
A
ALA
353
A
ILE
98
A
ILE
98
A
SER
101
A
SER
101
A
GLY
246
A
GLY
246
A
VAL
249
A
VAL
249
A
ALA
228
A
ALA
228
A
SER
233
A
SER
233
A
LEU
198
A
LEU
198
A
ASP
202
A
ASP
202
A
ILE
166
A
ILE
166
A
CYS
170
A
CYS
170
A
THR
120
A
THR
120
A
ASP
125
A
ASP
125
A
GLU
142
A
GLU
142
A
PRO
147
A
PRO
147
A
GLU
318
A
GLU
318
A
GLY
321
A
GLY
321
A
TYR
327
A
TYR
327
A
LYS
331
A
LYS
331
A
VAL
368
A
VAL
368
A
SER
371
A
SER
371
A
THR
355
A
THR
355
A
PRO
356
A
PRO
356
BINDING SITE FOR RESIDUE LLP A 401
Software
15
A
GLY
103
A
GLY
103
15
1_555
A
ALA
104
A
ALA
104
15
1_555
A
LYS
105
A
LYS
105
15
1_555
A
TYR
128
A
TYR
128
15
1_555
A
CYS
170
A
CYS
170
15
1_555
A
ASN
174
A
ASN
174
15
1_555
A
ASP
202
A
ASP
202
15
1_555
A
TYR
205
A
TYR
205
15
1_555
A
PHE
208
A
PHE
208
15
1_555
A
SER
233
A
SER
233
15
1_555
A
PHE
234
A
PHE
234
15
1_555
A
SER
235
A
SER
235
15
1_555
A
PRO
237
A
PRO
237
15
1_555
A
LEU
238
A
LEU
238
15
1_555
A
ASN
275
A
ASN
275
15
6_555
98
I 41 2 2