0.013716
0.000000
0.000000
0.000000
0.012598
0.000000
0.000000
0.000000
0.012798
0.00000
0.00000
0.00000
Tanaka, H.
Nogi, T.
Yasui, N.
Takagi, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
72.910
79.380
78.135
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
R
C
N
252
R
C
N
253
R
C
N
254
S
C
N
255
R
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
R
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
US
Plos One
1932-6203
6
e19411
e19411
10.1371/journal.pone.0019411
21552542
Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin
2011
10.2210/pdb3asi/pdb
pdb_00003asi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-10-16
ADSC QUANTUM 315r
rotated-inclined double-crystal monochromator, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL41XU
SPring-8
1.0000
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
44838.309
Neurexin-1-alpha
UNP residues 923-1323
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
18.015
water
148
nat
water
Neurexin I-alpha
no
no
RNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSS
NKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLN
GRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW
PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTR
SGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGE
VSRLENLYFQ
RNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSS
NKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLN
GRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW
PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTR
SGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGE
VSRLENLYFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine
sample
NRXN1
9913
Bos taurus
CHO lec 3.2.8.1
10029
Cricetulus griseus
pCDNA3.1
vector
1
2.52
51.22
VAPOR DIFFUSION, HANGING DROP
7.0
18% PEG3000, 0.1M sodium acetate and 0.3M sodium malonate pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293KK
293
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2011-04-13
1
1
2011-07-13
1
2
2020-07-29
1
3
2023-11-01
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
PDBJ
Y
PDBJ
2010-12-13
REL
REL
CA
CALCIUM ION
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
1. RESIDUE 1068 (UNP RESIDUE NUMBER 1128) WAS A PHE IN THE CDNA USED FOR THIS STUDY; 2. SEQUENCE OF THE PROTEIN WAS BASED ON ISOFORM 11 OF DATABASE Q28146 (NRX1A_BOVIN).
1C4R
PDB ENTRY 1C4R
PDB
experimental model
CA
2001
2
CA
CA
2001
A
NAG
4001
3
NAG
NAG
4001
A
HOH
5001
4
HOH
HOH
5001
A
HOH
5002
4
HOH
HOH
5002
A
HOH
5003
4
HOH
HOH
5003
A
HOH
5004
4
HOH
HOH
5004
A
HOH
5005
4
HOH
HOH
5005
A
HOH
5006
4
HOH
HOH
5006
A
HOH
5007
4
HOH
HOH
5007
A
HOH
5008
4
HOH
HOH
5008
A
HOH
5009
4
HOH
HOH
5009
A
HOH
5010
4
HOH
HOH
5010
A
HOH
5011
4
HOH
HOH
5011
A
HOH
5012
4
HOH
HOH
5012
A
HOH
5013
4
HOH
HOH
5013
A
HOH
5014
4
HOH
HOH
5014
A
HOH
5015
4
HOH
HOH
5015
A
HOH
5016
4
HOH
HOH
5016
A
HOH
5017
4
HOH
HOH
5017
A
HOH
5018
4
HOH
HOH
5018
A
HOH
5019
4
HOH
HOH
5019
A
HOH
5020
4
HOH
HOH
5020
A
HOH
5021
4
HOH
HOH
5021
A
HOH
5022
4
HOH
HOH
5022
A
HOH
5023
4
HOH
HOH
5023
A
HOH
5024
4
HOH
HOH
5024
A
HOH
5025
4
HOH
HOH
5025
A
HOH
5026
4
HOH
HOH
5026
A
HOH
5027
4
HOH
HOH
5027
A
HOH
5028
4
HOH
HOH
5028
A
HOH
5029
4
HOH
HOH
5029
A
HOH
5030
4
HOH
HOH
5030
A
HOH
5031
4
HOH
HOH
5031
A
HOH
5032
4
HOH
HOH
5032
A
HOH
5033
4
HOH
HOH
5033
A
HOH
5034
4
HOH
HOH
5034
A
HOH
5035
4
HOH
HOH
5035
A
HOH
5036
4
HOH
HOH
5036
A
HOH
5037
4
HOH
HOH
5037
A
HOH
5038
4
HOH
HOH
5038
A
HOH
5039
4
HOH
HOH
5039
A
HOH
5040
4
HOH
HOH
5040
A
HOH
5041
4
HOH
HOH
5041
A
HOH
5042
4
HOH
HOH
5042
A
HOH
5043
4
HOH
HOH
5043
A
HOH
5044
4
HOH
HOH
5044
A
HOH
5045
4
HOH
HOH
5045
A
HOH
5046
4
HOH
HOH
5046
A
HOH
5047
4
HOH
HOH
5047
A
HOH
5048
4
HOH
HOH
5048
A
HOH
5049
4
HOH
HOH
5049
A
HOH
5050
4
HOH
HOH
5050
A
HOH
5051
4
HOH
HOH
5051
A
HOH
5052
4
HOH
HOH
5052
A
HOH
5053
4
HOH
HOH
5053
A
HOH
5054
4
HOH
HOH
5054
A
HOH
5055
4
HOH
HOH
5055
A
HOH
5056
4
HOH
HOH
5056
A
HOH
5057
4
HOH
HOH
5057
A
HOH
5058
4
HOH
HOH
5058
A
HOH
5059
4
HOH
HOH
5059
A
HOH
5060
4
HOH
HOH
5060
A
HOH
5061
4
HOH
HOH
5061
A
HOH
5062
4
HOH
HOH
5062
A
HOH
5063
4
HOH
HOH
5063
A
HOH
5064
4
HOH
HOH
5064
A
HOH
5065
4
HOH
HOH
5065
A
HOH
5066
4
HOH
HOH
5066
A
HOH
5067
4
HOH
HOH
5067
A
HOH
5068
4
HOH
HOH
5068
A
HOH
5069
4
HOH
HOH
5069
A
HOH
5070
4
HOH
HOH
5070
A
HOH
5071
4
HOH
HOH
5071
A
HOH
5072
4
HOH
HOH
5072
A
HOH
5073
4
HOH
HOH
5073
A
HOH
5074
4
HOH
HOH
5074
A
HOH
5075
4
HOH
HOH
5075
A
HOH
5076
4
HOH
HOH
5076
A
HOH
5077
4
HOH
HOH
5077
A
HOH
5078
4
HOH
HOH
5078
A
HOH
5079
4
HOH
HOH
5079
A
HOH
5080
4
HOH
HOH
5080
A
HOH
5081
4
HOH
HOH
5081
A
HOH
5082
4
HOH
HOH
5082
A
HOH
5083
4
HOH
HOH
5083
A
HOH
5084
4
HOH
HOH
5084
A
HOH
5085
4
HOH
HOH
5085
A
HOH
5086
4
HOH
HOH
5086
A
HOH
5087
4
HOH
HOH
5087
A
HOH
5088
4
HOH
HOH
5088
A
HOH
5089
4
HOH
HOH
5089
A
HOH
5090
4
HOH
HOH
5090
A
HOH
5091
4
HOH
HOH
5091
A
HOH
5092
4
HOH
HOH
5092
A
HOH
5093
4
HOH
HOH
5093
A
HOH
5094
4
HOH
HOH
5094
A
HOH
5095
4
HOH
HOH
5095
A
HOH
5096
4
HOH
HOH
5096
A
HOH
5097
4
HOH
HOH
5097
A
HOH
5098
4
HOH
HOH
5098
A
HOH
5099
4
HOH
HOH
5099
A
HOH
5100
4
HOH
HOH
5100
A
HOH
5101
4
HOH
HOH
5101
A
HOH
5102
4
HOH
HOH
5102
A
HOH
5103
4
HOH
HOH
5103
A
HOH
5104
4
HOH
HOH
5104
A
HOH
5105
4
HOH
HOH
5105
A
HOH
5106
4
HOH
HOH
5106
A
HOH
5107
4
HOH
HOH
5107
A
HOH
5108
4
HOH
HOH
5108
A
HOH
5109
4
HOH
HOH
5109
A
HOH
5110
4
HOH
HOH
5110
A
HOH
5111
4
HOH
HOH
5111
A
HOH
5112
4
HOH
HOH
5112
A
HOH
5113
4
HOH
HOH
5113
A
HOH
5114
4
HOH
HOH
5114
A
HOH
5115
4
HOH
HOH
5115
A
HOH
5116
4
HOH
HOH
5116
A
HOH
5117
4
HOH
HOH
5117
A
HOH
5118
4
HOH
HOH
5118
A
HOH
5119
4
HOH
HOH
5119
A
HOH
5120
4
HOH
HOH
5120
A
HOH
5121
4
HOH
HOH
5121
A
HOH
5122
4
HOH
HOH
5122
A
HOH
5123
4
HOH
HOH
5123
A
HOH
5124
4
HOH
HOH
5124
A
HOH
5125
4
HOH
HOH
5125
A
HOH
5126
4
HOH
HOH
5126
A
HOH
5127
4
HOH
HOH
5127
A
HOH
5128
4
HOH
HOH
5128
A
HOH
5129
4
HOH
HOH
5129
A
HOH
5130
4
HOH
HOH
5130
A
HOH
5131
4
HOH
HOH
5131
A
HOH
5132
4
HOH
HOH
5132
A
HOH
5133
4
HOH
HOH
5133
A
HOH
5134
4
HOH
HOH
5134
A
HOH
5135
4
HOH
HOH
5135
A
HOH
5136
4
HOH
HOH
5136
A
HOH
5137
4
HOH
HOH
5137
A
HOH
5138
4
HOH
HOH
5138
A
HOH
5139
4
HOH
HOH
5139
A
HOH
5140
4
HOH
HOH
5140
A
HOH
5141
4
HOH
HOH
5141
A
HOH
5142
4
HOH
HOH
5142
A
HOH
5143
4
HOH
HOH
5143
A
HOH
5144
4
HOH
HOH
5144
A
HOH
5145
4
HOH
HOH
5145
A
HOH
5146
4
HOH
HOH
5146
A
HOH
5147
4
HOH
HOH
5147
A
HOH
5148
4
HOH
HOH
5148
A
n
1
863
A
n
2
864
A
n
3
865
A
n
4
866
A
ALA
867
n
5
ALA
867
A
ASP
868
n
6
ASP
868
A
PRO
869
n
7
PRO
869
A
VAL
870
n
8
VAL
870
A
THR
871
n
9
THR
871
A
PHE
872
n
10
PHE
872
A
LYS
873
n
11
LYS
873
A
THR
874
n
12
THR
874
A
LYS
875
n
13
LYS
875
A
SER
876
n
14
SER
876
A
SER
877
n
15
SER
877
A
TYR
878
n
16
TYR
878
A
VAL
879
n
17
VAL
879
A
ALA
880
n
18
ALA
880
A
LEU
881
n
19
LEU
881
A
ALA
882
n
20
ALA
882
A
THR
883
n
21
THR
883
A
LEU
884
n
22
LEU
884
A
GLN
885
n
23
GLN
885
A
ALA
886
n
24
ALA
886
A
TYR
887
n
25
TYR
887
A
THR
888
n
26
THR
888
A
SER
889
n
27
SER
889
A
MET
890
n
28
MET
890
A
HIS
891
n
29
HIS
891
A
LEU
892
n
30
LEU
892
A
PHE
893
n
31
PHE
893
A
PHE
894
n
32
PHE
894
A
GLN
895
n
33
GLN
895
A
PHE
896
n
34
PHE
896
A
LYS
897
n
35
LYS
897
A
THR
898
n
36
THR
898
A
THR
899
n
37
THR
899
A
SER
900
n
38
SER
900
A
LEU
901
n
39
LEU
901
A
ASP
902
n
40
ASP
902
A
GLY
903
n
41
GLY
903
A
LEU
904
n
42
LEU
904
A
ILE
905
n
43
ILE
905
A
LEU
906
n
44
LEU
906
A
TYR
907
n
45
TYR
907
A
ASN
908
n
46
ASN
908
A
SER
909
n
47
SER
909
A
GLY
910
n
48
GLY
910
A
ASP
911
n
49
ASP
911
A
GLY
912
n
50
GLY
912
A
ASN
913
n
51
ASN
913
A
ASP
914
n
52
ASP
914
A
PHE
915
n
53
PHE
915
A
ILE
916
n
54
ILE
916
A
VAL
917
n
55
VAL
917
A
VAL
918
n
56
VAL
918
A
GLU
919
n
57
GLU
919
A
LEU
920
n
58
LEU
920
A
VAL
921
n
59
VAL
921
A
LYS
922
n
60
LYS
922
A
GLY
923
n
61
GLY
923
A
TYR
924
n
62
TYR
924
A
LEU
925
n
63
LEU
925
A
HIS
926
n
64
HIS
926
A
TYR
927
n
65
TYR
927
A
VAL
928
n
66
VAL
928
A
PHE
929
n
67
PHE
929
A
ASP
930
n
68
ASP
930
A
LEU
931
n
69
LEU
931
A
GLY
932
n
70
GLY
932
A
ASN
933
n
71
ASN
933
A
GLY
934
n
72
GLY
934
A
ALA
935
n
73
ALA
935
A
ASN
936
n
74
ASN
936
A
LEU
937
n
75
LEU
937
A
ILE
938
n
76
ILE
938
A
LYS
939
n
77
LYS
939
A
GLY
940
n
78
GLY
940
A
SER
941
n
79
SER
941
A
SER
942
n
80
SER
942
A
ASN
943
n
81
ASN
943
A
LYS
944
n
82
LYS
944
A
PRO
945
n
83
PRO
945
A
LEU
946
n
84
LEU
946
A
ASN
947
n
85
ASN
947
A
ASP
948
n
86
ASP
948
A
ASN
949
n
87
ASN
949
A
GLN
950
n
88
GLN
950
A
TRP
951
n
89
TRP
951
A
HIS
952
n
90
HIS
952
A
ASN
953
n
91
ASN
953
A
VAL
954
n
92
VAL
954
A
MET
955
n
93
MET
955
A
ILE
956
n
94
ILE
956
A
SER
957
n
95
SER
957
A
ARG
958
n
96
ARG
958
A
ASP
959
n
97
ASP
959
A
THR
960
n
98
THR
960
A
SER
961
n
99
SER
961
A
ASN
962
n
100
ASN
962
A
LEU
963
n
101
LEU
963
A
HIS
964
n
102
HIS
964
A
THR
965
n
103
THR
965
A
VAL
966
n
104
VAL
966
A
LYS
967
n
105
LYS
967
A
ILE
968
n
106
ILE
968
A
ASP
969
n
107
ASP
969
A
THR
970
n
108
THR
970
A
LYS
971
n
109
LYS
971
A
ILE
972
n
110
ILE
972
A
THR
973
n
111
THR
973
A
THR
974
n
112
THR
974
A
GLN
975
n
113
GLN
975
A
ILE
976
n
114
ILE
976
A
THR
977
n
115
THR
977
A
ALA
978
n
116
ALA
978
A
GLY
979
n
117
GLY
979
A
ALA
980
n
118
ALA
980
A
ARG
981
n
119
ARG
981
A
ASN
982
n
120
ASN
982
A
LEU
983
n
121
LEU
983
A
ASP
984
n
122
ASP
984
A
LEU
985
n
123
LEU
985
A
LYS
986
n
124
LYS
986
A
SER
987
n
125
SER
987
A
ASP
988
n
126
ASP
988
A
LEU
989
n
127
LEU
989
A
TYR
990
n
128
TYR
990
A
ILE
991
n
129
ILE
991
A
GLY
992
n
130
GLY
992
A
GLY
993
n
131
GLY
993
A
VAL
994
n
132
VAL
994
A
ALA
995
n
133
ALA
995
A
LYS
996
n
134
LYS
996
A
GLU
997
n
135
GLU
997
A
THR
998
n
136
THR
998
A
TYR
999
n
137
TYR
999
A
LYS
1000
n
138
LYS
1000
A
SER
1001
n
139
SER
1001
A
LEU
1002
n
140
LEU
1002
A
PRO
1003
n
141
PRO
1003
A
LYS
1004
n
142
LYS
1004
A
LEU
1005
n
143
LEU
1005
A
VAL
1006
n
144
VAL
1006
A
HIS
1007
n
145
HIS
1007
A
ALA
1008
n
146
ALA
1008
A
LYS
1009
n
147
LYS
1009
A
GLU
1010
n
148
GLU
1010
A
GLY
1011
n
149
GLY
1011
A
PHE
1012
n
150
PHE
1012
A
GLN
1013
n
151
GLN
1013
A
GLY
1014
n
152
GLY
1014
A
CYS
1015
n
153
CYS
1015
A
LEU
1016
n
154
LEU
1016
A
ALA
1017
n
155
ALA
1017
A
SER
1018
n
156
SER
1018
A
VAL
1019
n
157
VAL
1019
A
ASP
1020
n
158
ASP
1020
A
LEU
1021
n
159
LEU
1021
A
ASN
1022
n
160
ASN
1022
A
GLY
1023
n
161
GLY
1023
A
ARG
1024
n
162
ARG
1024
A
LEU
1025
n
163
LEU
1025
A
PRO
1026
n
164
PRO
1026
A
ASP
1027
n
165
ASP
1027
A
LEU
1028
n
166
LEU
1028
A
ILE
1029
n
167
ILE
1029
A
SER
1030
n
168
SER
1030
A
ASP
1031
n
169
ASP
1031
A
ALA
1032
n
170
ALA
1032
A
LEU
1033
n
171
LEU
1033
A
PHE
1034
n
172
PHE
1034
A
CYS
1035
n
173
CYS
1035
A
ASN
1036
n
174
ASN
1036
A
GLY
1037
n
175
GLY
1037
A
GLN
1038
n
176
GLN
1038
A
ILE
1039
n
177
ILE
1039
A
GLU
1040
n
178
GLU
1040
A
ARG
1041
n
179
ARG
1041
A
GLY
1042
n
180
GLY
1042
A
CYS
1043
n
181
CYS
1043
A
GLU
1044
n
182
GLU
1044
A
GLY
1045
n
183
GLY
1045
A
PRO
1046
n
184
PRO
1046
A
SER
1047
n
185
SER
1047
A
THR
1048
n
186
THR
1048
A
THR
1049
n
187
THR
1049
A
CYS
1050
n
188
CYS
1050
A
GLN
1051
n
189
GLN
1051
A
GLU
1052
n
190
GLU
1052
A
ASP
1053
n
191
ASP
1053
A
SER
1054
n
192
SER
1054
A
CYS
1055
n
193
CYS
1055
A
SER
1056
n
194
SER
1056
A
ASN
1057
n
195
ASN
1057
A
GLN
1058
n
196
GLN
1058
A
GLY
1059
n
197
GLY
1059
A
VAL
1060
n
198
VAL
1060
A
CYS
1061
n
199
CYS
1061
A
LEU
1062
n
200
LEU
1062
A
GLN
1063
n
201
GLN
1063
A
GLN
1064
n
202
GLN
1064
A
TRP
1065
n
203
TRP
1065
A
ASP
1066
n
204
ASP
1066
A
GLY
1067
n
205
GLY
1067
A
PHE
1068
n
206
PHE
1068
A
SER
1069
n
207
SER
1069
A
CYS
1070
n
208
CYS
1070
A
ASP
1071
n
209
ASP
1071
A
CYS
1072
n
210
CYS
1072
A
SER
1073
n
211
SER
1073
A
MET
1074
n
212
MET
1074
A
THR
1075
n
213
THR
1075
A
SER
1076
n
214
SER
1076
A
PHE
1077
n
215
PHE
1077
A
SER
1078
n
216
SER
1078
A
GLY
1079
n
217
GLY
1079
A
PRO
1080
n
218
PRO
1080
A
LEU
1081
n
219
LEU
1081
A
CYS
1082
n
220
CYS
1082
A
ASN
1083
n
221
ASN
1083
A
ASP
1084
n
222
ASP
1084
A
PRO
1085
n
223
PRO
1085
A
GLY
1086
n
224
GLY
1086
A
THR
1087
n
225
THR
1087
A
THR
1088
n
226
THR
1088
A
TYR
1089
n
227
TYR
1089
A
ILE
1090
n
228
ILE
1090
A
PHE
1091
n
229
PHE
1091
A
SER
1092
n
230
SER
1092
A
LYS
1093
n
231
LYS
1093
A
GLY
1094
n
232
GLY
1094
A
GLY
1095
n
233
GLY
1095
A
GLY
1096
n
234
GLY
1096
A
GLN
1097
n
235
GLN
1097
A
ILE
1098
n
236
ILE
1098
A
THR
1099
n
237
THR
1099
A
TYR
1100
n
238
TYR
1100
A
LYS
1101
n
239
LYS
1101
A
TRP
1102
n
240
TRP
1102
A
PRO
1103
n
241
PRO
1103
A
PRO
1104
n
242
PRO
1104
A
ASN
1105
n
243
ASN
1105
A
ASP
1106
n
244
ASP
1106
A
ARG
1107
n
245
ARG
1107
A
PRO
1108
n
246
PRO
1108
A
SER
1109
n
247
SER
1109
A
THR
1110
n
248
THR
1110
A
ARG
1111
n
249
ARG
1111
A
ALA
1112
n
250
ALA
1112
A
ASP
1113
n
251
ASP
1113
A
ARG
1114
n
252
ARG
1114
A
LEU
1115
n
253
LEU
1115
A
ALA
1116
n
254
ALA
1116
A
ILE
1117
n
255
ILE
1117
A
GLY
1118
n
256
GLY
1118
A
PHE
1119
n
257
PHE
1119
A
SER
1120
n
258
SER
1120
A
THR
1121
n
259
THR
1121
A
VAL
1122
n
260
VAL
1122
A
GLN
1123
n
261
GLN
1123
A
LYS
1124
n
262
LYS
1124
A
GLU
1125
n
263
GLU
1125
A
ALA
1126
n
264
ALA
1126
A
VAL
1127
n
265
VAL
1127
A
LEU
1128
n
266
LEU
1128
A
VAL
1129
n
267
VAL
1129
A
ARG
1130
n
268
ARG
1130
A
VAL
1131
n
269
VAL
1131
A
ASP
1132
n
270
ASP
1132
A
SER
1133
n
271
SER
1133
A
SER
1134
n
272
SER
1134
A
SER
1135
n
273
SER
1135
A
GLY
1136
n
274
GLY
1136
A
LEU
1137
n
275
LEU
1137
A
GLY
1138
n
276
GLY
1138
A
ASP
1139
n
277
ASP
1139
A
TYR
1140
n
278
TYR
1140
A
LEU
1141
n
279
LEU
1141
A
GLU
1142
n
280
GLU
1142
A
LEU
1143
n
281
LEU
1143
A
HIS
1144
n
282
HIS
1144
A
ILE
1145
n
283
ILE
1145
A
HIS
1146
n
284
HIS
1146
A
GLN
1147
n
285
GLN
1147
A
GLY
1148
n
286
GLY
1148
A
LYS
1149
n
287
LYS
1149
A
ILE
1150
n
288
ILE
1150
A
GLY
1151
n
289
GLY
1151
A
VAL
1152
n
290
VAL
1152
A
LYS
1153
n
291
LYS
1153
A
PHE
1154
n
292
PHE
1154
A
ASN
1155
n
293
ASN
1155
A
VAL
1156
n
294
VAL
1156
A
GLY
1157
n
295
GLY
1157
A
THR
1158
n
296
THR
1158
A
ASP
1159
n
297
ASP
1159
A
ASP
1160
n
298
ASP
1160
A
ILE
1161
n
299
ILE
1161
A
ALA
1162
n
300
ALA
1162
A
ILE
1163
n
301
ILE
1163
A
GLU
1164
n
302
GLU
1164
A
GLU
1165
n
303
GLU
1165
A
SER
1166
n
304
SER
1166
A
ASN
1167
n
305
ASN
1167
A
ALA
1168
n
306
ALA
1168
A
ILE
1169
n
307
ILE
1169
A
ILE
1170
n
308
ILE
1170
A
ASN
1171
n
309
ASN
1171
A
ASP
1172
n
310
ASP
1172
A
GLY
1173
n
311
GLY
1173
A
LYS
1174
n
312
LYS
1174
A
TYR
1175
n
313
TYR
1175
A
HIS
1176
n
314
HIS
1176
A
VAL
1177
n
315
VAL
1177
A
VAL
1178
n
316
VAL
1178
A
ARG
1179
n
317
ARG
1179
A
PHE
1180
n
318
PHE
1180
A
THR
1181
n
319
THR
1181
A
ARG
1182
n
320
ARG
1182
A
SER
1183
n
321
SER
1183
A
GLY
1184
n
322
GLY
1184
A
GLY
1185
n
323
GLY
1185
A
ASN
1186
n
324
ASN
1186
A
ALA
1187
n
325
ALA
1187
A
THR
1188
n
326
THR
1188
A
LEU
1189
n
327
LEU
1189
A
GLN
1190
n
328
GLN
1190
A
VAL
1191
n
329
VAL
1191
A
ASP
1192
n
330
ASP
1192
A
SER
1193
n
331
SER
1193
A
TRP
1194
n
332
TRP
1194
A
PRO
1195
n
333
PRO
1195
A
VAL
1196
n
334
VAL
1196
A
ILE
1197
n
335
ILE
1197
A
GLU
1198
n
336
GLU
1198
A
ARG
1199
n
337
ARG
1199
A
TYR
1200
n
338
TYR
1200
A
PRO
1201
n
339
PRO
1201
A
ALA
1202
n
340
ALA
1202
A
GLY
1203
n
341
GLY
1203
A
ARG
1204
n
342
ARG
1204
A
GLN
1205
n
343
GLN
1205
A
LEU
1206
n
344
LEU
1206
A
THR
1207
n
345
THR
1207
A
ILE
1208
n
346
ILE
1208
A
PHE
1209
n
347
PHE
1209
A
ASN
1210
n
348
ASN
1210
A
SER
1211
n
349
SER
1211
A
GLN
1212
n
350
GLN
1212
A
ALA
1213
n
351
ALA
1213
A
THR
1214
n
352
THR
1214
A
ILE
1215
n
353
ILE
1215
A
ILE
1216
n
354
ILE
1216
A
ILE
1217
n
355
ILE
1217
A
GLY
1218
n
356
GLY
1218
A
GLY
1219
n
357
GLY
1219
A
LYS
1220
n
358
LYS
1220
A
GLU
1221
n
359
GLU
1221
A
GLN
1222
n
360
GLN
1222
A
GLY
1223
n
361
GLY
1223
A
GLN
1224
n
362
GLN
1224
A
PRO
1225
n
363
PRO
1225
A
PHE
1226
n
364
PHE
1226
A
GLN
1227
n
365
GLN
1227
A
GLY
1228
n
366
GLY
1228
A
GLN
1229
n
367
GLN
1229
A
LEU
1230
n
368
LEU
1230
A
SER
1231
n
369
SER
1231
A
GLY
1232
n
370
GLY
1232
A
LEU
1233
n
371
LEU
1233
A
TYR
1234
n
372
TYR
1234
A
TYR
1235
n
373
TYR
1235
A
ASN
1236
n
374
ASN
1236
A
GLY
1237
n
375
GLY
1237
A
LEU
1238
n
376
LEU
1238
A
LYS
1239
n
377
LYS
1239
A
VAL
1240
n
378
VAL
1240
A
LEU
1241
n
379
LEU
1241
A
ASN
1242
n
380
ASN
1242
A
MET
1243
n
381
MET
1243
A
ALA
1244
n
382
ALA
1244
A
ALA
1245
n
383
ALA
1245
A
GLU
1246
n
384
GLU
1246
A
ASN
1247
n
385
ASN
1247
A
ASP
1248
n
386
ASP
1248
A
ALA
1249
n
387
ALA
1249
A
ASN
1250
n
388
ASN
1250
A
ILE
1251
n
389
ILE
1251
A
ALA
1252
n
390
ALA
1252
A
ILE
1253
n
391
ILE
1253
A
VAL
1254
n
392
VAL
1254
A
GLY
1255
n
393
GLY
1255
A
ASN
1256
n
394
ASN
1256
A
VAL
1257
n
395
VAL
1257
A
ARG
1258
n
396
ARG
1258
A
LEU
1259
n
397
LEU
1259
A
VAL
1260
n
398
VAL
1260
A
GLY
1261
n
399
GLY
1261
A
n
400
1262
A
n
401
1263
A
n
402
1264
A
n
403
1265
A
n
404
1266
A
n
405
1267
A
n
406
1268
A
n
407
1269
A
n
408
1270
A
n
409
1271
A
n
410
1272
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
1139
A
OD2
ASP
277
1_555
A
CA
2001
B
CA
CA
1_555
A
VAL
1156
A
O
VAL
294
1_555
97.1
A
ASP
1139
A
OD2
ASP
277
1_555
A
CA
2001
B
CA
CA
1_555
A
ILE
1208
A
O
ILE
346
1_555
89.9
A
VAL
1156
A
O
VAL
294
1_555
A
CA
2001
B
CA
CA
1_555
A
ILE
1208
A
O
ILE
346
1_555
90.9
A
ASP
1139
A
OD2
ASP
277
1_555
A
CA
2001
B
CA
CA
1_555
A
ASN
1210
A
OD1
ASN
348
1_555
95.1
A
VAL
1156
A
O
VAL
294
1_555
A
CA
2001
B
CA
CA
1_555
A
ASN
1210
A
OD1
ASN
348
1_555
167.6
A
ILE
1208
A
O
ILE
346
1_555
A
CA
2001
B
CA
CA
1_555
A
ASN
1210
A
OD1
ASN
348
1_555
91.7
A
ASP
1139
A
OD2
ASP
277
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5072
D
O
HOH
1_555
84.5
A
VAL
1156
A
O
VAL
294
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5072
D
O
HOH
1_555
83.6
A
ILE
1208
A
O
ILE
346
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5072
D
O
HOH
1_555
171.6
A
ASN
1210
A
OD1
ASN
348
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5072
D
O
HOH
1_555
95.1
A
ASP
1139
A
OD2
ASP
277
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5078
D
O
HOH
1_555
159.2
A
VAL
1156
A
O
VAL
294
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5078
D
O
HOH
1_555
103.7
A
ILE
1208
A
O
ILE
346
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5078
D
O
HOH
1_555
89.6
A
ASN
1210
A
OD1
ASN
348
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5078
D
O
HOH
1_555
64.2
A
HOH
5072
D
O
HOH
1_555
A
CA
2001
B
CA
CA
1_555
A
HOH
5078
D
O
HOH
1_555
97.8
A
ASN
1186
GLYCOSYLATION SITE
A
ASN
324
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
975
A
O
GLN
113
A
N
HIS
964
A
N
HIS
102
A
O
LYS
967
A
O
LYS
105
A
N
MET
955
A
N
MET
93
A
O
ILE
956
A
O
ILE
94
A
N
LEU
892
A
N
LEU
30
A
N
PHE
893
A
N
PHE
31
A
O
ASP
1020
A
O
ASP
158
A
O
GLY
1014
A
O
GLY
152
A
N
PHE
872
A
N
PHE
10
A
N
THR
871
A
N
THR
9
A
O
GLU
1040
A
O
GLU
178
A
O
ASN
936
A
O
ASN
74
A
N
PHE
929
A
N
PHE
67
A
O
HIS
926
A
O
HIS
64
A
N
GLU
919
A
N
GLU
57
A
O
LEU
920
A
O
LEU
58
A
N
GLY
903
A
N
GLY
41
A
N
TYR
907
A
N
TYR
45
A
O
TYR
990
A
O
TYR
128
A
O
LEU
989
A
O
LEU
127
A
N
LEU
881
A
N
LEU
19
A
N
TYR
878
A
N
TYR
16
A
O
ASN
1036
A
O
ASN
174
A
N
VAL
1060
A
N
VAL
198
A
O
ASP
1071
A
O
ASP
209
A
N
SER
1078
A
N
SER
216
A
O
ASP
1084
A
O
ASP
222
A
O
ILE
1163
A
O
ILE
301
A
N
VAL
1152
A
N
VAL
290
A
O
LYS
1153
A
O
LYS
291
A
N
GLU
1142
A
N
GLU
280
A
O
LEU
1141
A
O
LEU
279
A
N
VAL
1131
A
N
VAL
269
A
N
ARG
1130
A
N
ARG
268
A
O
ILE
1216
A
O
ILE
354
A
O
ILE
1217
A
O
ILE
355
A
N
ILE
1098
A
N
ILE
236
A
N
PHE
1091
A
N
PHE
229
A
O
GLY
1228
A
O
GLY
366
A
O
SER
1231
A
O
SER
369
A
N
GLY
1118
A
N
GLY
256
A
N
LEU
1115
A
N
LEU
253
A
O
PHE
1180
A
O
PHE
318
A
N
SER
1183
A
N
SER
321
A
O
ASN
1186
A
O
ASN
324
A
N
LEU
1189
A
N
LEU
327
A
O
ILE
1197
A
O
ILE
335
A
O
ILE
1163
A
O
ILE
301
A
N
VAL
1152
A
N
VAL
290
A
O
LYS
1153
A
O
LYS
291
A
N
GLU
1142
A
N
GLU
280
A
O
LEU
1141
A
O
LEU
279
A
N
VAL
1131
A
N
VAL
269
A
N
ARG
1130
A
N
ARG
268
A
O
ILE
1216
A
O
ILE
354
A
O
ILE
1217
A
O
ILE
355
A
N
ILE
1098
A
N
ILE
236
A
N
THR
1099
A
N
THR
237
A
O
ALA
1252
A
O
ALA
390
1
A
ARG
863
A
ARG
1
1
Y
1
A
ASN
864
A
ASN
2
1
Y
1
A
ILE
865
A
ILE
3
1
Y
1
A
ILE
866
A
ILE
4
1
Y
1
A
GLU
1262
A
GLU
400
1
Y
1
A
VAL
1263
A
VAL
401
1
Y
1
A
SER
1264
A
SER
402
1
Y
1
A
ARG
1265
A
ARG
403
1
Y
1
A
LEU
1266
A
LEU
404
1
Y
1
A
GLU
1267
A
GLU
405
1
Y
1
A
ASN
1268
A
ASN
406
1
Y
1
A
LEU
1269
A
LEU
407
1
Y
1
A
TYR
1270
A
TYR
408
1
Y
1
A
PHE
1271
A
PHE
409
1
Y
1
A
GLN
1272
A
GLN
410
1
Y
1
A
A
O
O
SER
HOH
877
5091
2.16
1
A
A
O
O
PHE
HOH
1012
5091
2.19
1
A
THR
883
-33.21
129.92
1
A
ASN
962
83.24
29.20
1
A
ASP
969
56.80
-102.69
1
A
ARG
981
-100.96
-105.39
1
A
LYS
986
-132.00
-36.85
1
A
ASN
1022
88.93
73.33
1
A
SER
1076
71.15
-5.05
1
A
LYS
1093
-38.23
125.49
1
A
THR
1158
-113.50
-105.40
1
A
ASN
1171
-94.17
43.92
1
A
ASP
1192
52.05
-125.60
24.548
3.16
0.00
0.00
-2.38
0.00
-0.78
0.940
0.903
0.2470
0.1971
0.1997
0.1997
2.30
39.07
1035
19697
19697
5.0
99.97
6.079
0.152
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.233
0.80
0.80
1.20
PDB ENTRY 1C4R
MAXIMUM LIKELIHOOD
MASK
2.30
39.07
148
3182
15
0
3019
0.008
0.022
3121
1.124
1.952
4238
6.312
5.000
400
40.307
25.000
142
14.725
15.000
516
18.024
15.000
14
0.073
0.200
475
0.004
0.021
2378
0.476
1.500
1955
0.925
2.000
3146
1.313
3.000
1166
2.249
4.500
1089
0.236
0.219
2.360
73
1412
20
99.93
28.8
2.30
39.07
3ASI
20732
20732
0
-3
0.083
1
20.9
7.1
99.9
0.271
2.30
2.42
6.2
2962
1
7.2
100
data collection
ADSC
Quantum
phasing
MOLREP
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6
1
N
N
2
N
N
3
N
N
4
N
N
A
ALA
995
A
ALA
133
HELX_P
A
LEU
1002
A
LEU
140
5
1
8
A
LYS
1239
A
LYS
377
HELX_P
A
GLU
1246
A
GLU
384
1
2
8
disulf
2.052
A
CYS
1015
A
SG
CYS
153
1_555
A
CYS
1043
A
SG
CYS
181
1_555
disulf
2.060
A
CYS
1050
A
SG
CYS
188
1_555
A
CYS
1061
A
SG
CYS
199
1_555
disulf
2.032
A
CYS
1055
A
SG
CYS
193
1_555
A
CYS
1070
A
SG
CYS
208
1_555
disulf
2.055
A
CYS
1072
A
SG
CYS
210
1_555
A
CYS
1082
A
SG
CYS
220
1_555
covale
1.447
one
N-Glycosylation
A
ASN
1186
A
ND2
ASN
324
1_555
A
NAG
4001
C
C1
NAG
1_555
metalc
2.452
A
ASP
1139
A
OD2
ASP
277
1_555
A
CA
2001
B
CA
CA
1_555
metalc
2.436
A
VAL
1156
A
O
VAL
294
1_555
A
CA
2001
B
CA
CA
1_555
metalc
2.349
A
ILE
1208
A
O
ILE
346
1_555
A
CA
2001
B
CA
CA
1_555
metalc
2.303
A
ASN
1210
A
OD1
ASN
348
1_555
A
CA
2001
B
CA
CA
1_555
metalc
2.518
A
CA
2001
B
CA
CA
1_555
A
HOH
5072
D
O
HOH
1_555
metalc
2.651
A
CA
2001
B
CA
CA
1_555
A
HOH
5078
D
O
HOH
1_555
CELL ADHESION
Beta-sandwich, cell adhesion, synapse maturation, Neuroligin, N-glycosylation, Membrane
NRX1A_BOVIN
UNP
1
923
Q28146
RNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSS
NKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLN
GRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGISCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW
PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTR
SGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVGE
V
923
1323
3ASI
863
1263
Q28146
A
1
1
401
1
ILE
SEE REMARK 999
PHE
1068
3ASI
A
Q28146
UNP
1128
206
1
expression tag
SER
1264
3ASI
A
Q28146
UNP
402
1
expression tag
ARG
1265
3ASI
A
Q28146
UNP
403
1
expression tag
LEU
1266
3ASI
A
Q28146
UNP
404
1
expression tag
GLU
1267
3ASI
A
Q28146
UNP
405
1
expression tag
ASN
1268
3ASI
A
Q28146
UNP
406
1
expression tag
LEU
1269
3ASI
A
Q28146
UNP
407
1
expression tag
TYR
1270
3ASI
A
Q28146
UNP
408
1
expression tag
PHE
1271
3ASI
A
Q28146
UNP
409
1
expression tag
GLN
1272
3ASI
A
Q28146
UNP
410
7
7
2
2
11
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
971
A
LYS
109
A
ILE
976
A
ILE
114
A
LEU
963
A
LEU
101
A
ILE
968
A
ILE
106
A
HIS
952
A
HIS
90
A
ARG
958
A
ARG
96
A
MET
890
A
MET
28
A
LYS
897
A
LYS
35
A
GLY
1014
A
GLY
152
A
ASP
1020
A
ASP
158
A
VAL
870
A
VAL
8
A
PHE
872
A
PHE
10
A
ILE
1039
A
ILE
177
A
ARG
1041
A
ARG
179
A
ALA
935
A
ALA
73
A
LYS
939
A
LYS
77
A
TYR
924
A
TYR
62
A
ASP
930
A
ASP
68
A
PHE
915
A
PHE
53
A
VAL
921
A
VAL
59
A
GLY
903
A
GLY
41
A
SER
909
A
SER
47
A
LEU
989
A
LEU
127
A
ILE
991
A
ILE
129
A
TYR
878
A
TYR
16
A
LEU
881
A
LEU
19
A
PHE
1034
A
PHE
172
A
ASN
1036
A
ASN
174
A
VAL
1060
A
VAL
198
A
GLN
1063
A
GLN
201
A
PHE
1068
A
PHE
206
A
ASP
1071
A
ASP
209
A
PHE
1077
A
PHE
215
A
SER
1078
A
SER
216
A
ASP
1084
A
ASP
222
A
PRO
1085
A
PRO
223
A
ILE
1161
A
ILE
299
A
GLU
1164
A
GLU
302
A
LYS
1149
A
LYS
287
A
ASN
1155
A
ASN
293
A
TYR
1140
A
TYR
278
A
HIS
1146
A
HIS
284
A
GLU
1125
A
GLU
263
A
SER
1133
A
SER
271
A
GLN
1212
A
GLN
350
A
ILE
1217
A
ILE
355
A
THR
1088
A
THR
226
A
LYS
1101
A
LYS
239
A
GLY
1228
A
GLY
366
A
TYR
1235
A
TYR
373
A
ALA
1112
A
ALA
250
A
SER
1120
A
SER
258
A
HIS
1176
A
HIS
314
A
SER
1183
A
SER
321
A
ASN
1186
A
ASN
324
A
VAL
1191
A
VAL
329
A
ILE
1197
A
ILE
335
A
ARG
1199
A
ARG
337
A
ILE
1161
A
ILE
299
A
GLU
1164
A
GLU
302
A
LYS
1149
A
LYS
287
A
ASN
1155
A
ASN
293
A
TYR
1140
A
TYR
278
A
HIS
1146
A
HIS
284
A
GLU
1125
A
GLU
263
A
SER
1133
A
SER
271
A
GLN
1212
A
GLN
350
A
ILE
1217
A
ILE
355
A
THR
1088
A
THR
226
A
LYS
1101
A
LYS
239
A
ILE
1251
A
ILE
389
A
VAL
1260
A
VAL
398
18
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