0.014136 0.008161 0.000000 0.000000 0.016322 0.000000 0.000000 0.000000 0.015013 0.000000 0.000000 0.000000 Peat, T.S. Deadman, J.J. Newman, J. Rhodes, D.I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 70.743 70.743 66.609 C2 H4 O2 60.052 ACETIC ACID non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GE Chembiochem 1439-4227 12 2311 2315 10.1002/cbic.201100350 21850718 Crystal structures of novel allosteric peptide inhibitors of HIV integrase identify new interactions at the LEDGF binding site. 2011 100 1 CCD 2009-12-14 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.96 1.0 MX2 Australian Synchrotron 0.96 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 20044.672 Integrase CCD domain (UNP RESIDUES 1197-1359) C56S, F139D, F185H 2 man polymer 933.981 LEDGF peptide 2 syn polymer 96.063 SULFATE ION 8 syn non-polymer 60.052 ACETIC ACID 2 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 141 nat water IN lens epithelial derived growth factor peptide no no MGSSHHHHHHSSGLVPRGSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWP VKTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG GIGGYSAGERIVDIIATDIQTKE MGSSHHHHHHSSGLVPRGSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWP VKTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG GIGGYSAGERIVDIIATDIQTKE A,B polypeptide(L) no no SLKIDNED SLKIDNED D,F polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-1 NEW YORK-5 ISOLATE sample gag-pol 11698 Human immunodeficiency virus type 1 562 Escherichia coli BL21(DE3) plasmid pET28 1 2.29 46.37 VAPOR DIFFUSION, SITTING DROP 40mM Tris pH 8.0, 250mM NaCl, 30mM MgCl2, 5mM DTT, 1.6-2.0M ammonium sulfate, 100mM sodium acetate buffer pH 5.0-5.5, vapor diffusion, sitting drop, temperature 293K, VAPOR DIFFUSION, SITTING DROP 5.0-5.5 293 repository Initial release Other Database references 1 0 2012-01-18 1 1 2012-12-12 1 2 2013-06-19 PDBJ Y PDBJ 2011-03-05 REL REL SO4 SULFATE ION ACY ACETIC ACID CL CHLORIDE ION HOH water chemical synthsis 9606 Human Homo sapiens sample Enzyme inhibitor SLKIDNED peptide Cyclic peptide SO4 2 3 SO4 SO4 2 A SO4 4 3 SO4 SO4 4 A SO4 5 3 SO4 SO4 5 A SO4 7 3 SO4 SO4 7 A ACY 1 4 ACY ACY 1 A CL 1 5 CL CL 213 A SO4 1 3 SO4 SO4 1 B SO4 3 3 SO4 SO4 3 B SO4 6 3 SO4 SO4 6 B SO4 8 3 SO4 SO4 8 B ACY 2 4 ACY ACY 2 B CL 2 5 CL CL 213 B HOH 6 6 HOH HOH 6 A HOH 10 6 HOH HOH 10 A HOH 11 6 HOH HOH 11 A HOH 12 6 HOH HOH 12 A HOH 14 6 HOH HOH 14 A HOH 15 6 HOH HOH 15 A HOH 18 6 HOH HOH 18 A HOH 19 6 HOH HOH 19 A HOH 21 6 HOH HOH 21 A HOH 23 6 HOH HOH 23 A HOH 24 6 HOH HOH 24 A HOH 27 6 HOH HOH 27 A HOH 28 6 HOH HOH 28 A HOH 29 6 HOH HOH 29 A HOH 1 6 HOH HOH 214 A HOH 7 6 HOH HOH 215 A HOH 32 6 HOH HOH 216 A HOH 35 6 HOH HOH 217 A HOH 38 6 HOH HOH 218 A HOH 39 6 HOH HOH 219 A HOH 40 6 HOH HOH 220 A HOH 42 6 HOH HOH 221 A HOH 43 6 HOH HOH 222 A HOH 46 6 HOH HOH 223 A HOH 47 6 HOH HOH 224 A HOH 48 6 HOH HOH 225 A HOH 51 6 HOH HOH 226 A HOH 55 6 HOH HOH 227 A HOH 62 6 HOH HOH 228 A HOH 63 6 HOH HOH 229 A HOH 65 6 HOH HOH 230 A HOH 68 6 HOH HOH 231 A HOH 70 6 HOH HOH 232 A HOH 71 6 HOH HOH 233 A HOH 72 6 HOH HOH 234 A HOH 74 6 HOH HOH 235 A HOH 75 6 HOH HOH 236 A HOH 77 6 HOH HOH 237 A HOH 78 6 HOH HOH 238 A HOH 79 6 HOH HOH 239 A HOH 83 6 HOH HOH 240 A HOH 84 6 HOH HOH 241 A HOH 87 6 HOH HOH 242 A HOH 88 6 HOH HOH 243 A HOH 89 6 HOH HOH 244 A HOH 90 6 HOH HOH 245 A HOH 91 6 HOH HOH 246 A HOH 92 6 HOH HOH 247 A HOH 93 6 HOH HOH 248 A HOH 94 6 HOH HOH 249 A HOH 95 6 HOH HOH 250 A HOH 103 6 HOH HOH 251 A HOH 105 6 HOH HOH 252 A HOH 106 6 HOH HOH 253 A HOH 107 6 HOH HOH 254 A HOH 108 6 HOH HOH 255 A HOH 109 6 HOH HOH 256 A HOH 110 6 HOH HOH 257 A HOH 111 6 HOH HOH 258 A HOH 117 6 HOH HOH 259 A HOH 120 6 HOH HOH 260 A HOH 121 6 HOH HOH 261 A HOH 122 6 HOH HOH 262 A HOH 123 6 HOH HOH 263 A HOH 124 6 HOH HOH 264 A HOH 129 6 HOH HOH 265 A HOH 137 6 HOH HOH 266 A HOH 138 6 HOH HOH 267 A HOH 139 6 HOH HOH 268 A HOH 140 6 HOH HOH 269 A HOH 141 6 HOH HOH 270 A HOH 4 6 HOH HOH 4 B HOH 5 6 HOH HOH 5 B HOH 9 6 HOH HOH 9 B HOH 13 6 HOH HOH 13 B HOH 16 6 HOH HOH 16 B HOH 17 6 HOH HOH 17 B HOH 20 6 HOH HOH 20 B HOH 22 6 HOH HOH 22 B HOH 25 6 HOH HOH 25 B HOH 26 6 HOH HOH 26 B HOH 2 6 HOH HOH 214 B HOH 3 6 HOH HOH 215 B HOH 8 6 HOH HOH 216 B HOH 30 6 HOH HOH 217 B HOH 31 6 HOH HOH 218 B HOH 33 6 HOH HOH 219 B HOH 34 6 HOH HOH 220 B HOH 36 6 HOH HOH 221 B HOH 37 6 HOH HOH 222 B HOH 41 6 HOH HOH 223 B HOH 44 6 HOH HOH 224 B HOH 45 6 HOH HOH 225 B HOH 49 6 HOH HOH 226 B HOH 50 6 HOH HOH 227 B HOH 52 6 HOH HOH 228 B HOH 53 6 HOH HOH 229 B HOH 54 6 HOH HOH 230 B HOH 56 6 HOH HOH 231 B HOH 57 6 HOH HOH 232 B HOH 58 6 HOH HOH 233 B HOH 59 6 HOH HOH 234 B HOH 60 6 HOH HOH 235 B HOH 61 6 HOH HOH 236 B HOH 64 6 HOH HOH 237 B HOH 66 6 HOH HOH 238 B HOH 67 6 HOH HOH 239 B HOH 69 6 HOH HOH 240 B HOH 73 6 HOH HOH 241 B HOH 76 6 HOH HOH 242 B HOH 80 6 HOH HOH 243 B HOH 81 6 HOH HOH 244 B HOH 82 6 HOH HOH 245 B HOH 85 6 HOH HOH 246 B HOH 86 6 HOH HOH 247 B HOH 96 6 HOH HOH 248 B HOH 97 6 HOH HOH 249 B HOH 98 6 HOH HOH 250 B HOH 99 6 HOH HOH 251 B HOH 100 6 HOH HOH 252 B HOH 101 6 HOH HOH 253 B HOH 102 6 HOH HOH 254 B HOH 104 6 HOH HOH 255 B HOH 112 6 HOH HOH 256 B HOH 113 6 HOH HOH 257 B HOH 114 6 HOH HOH 258 B HOH 115 6 HOH HOH 259 B HOH 116 6 HOH HOH 260 B HOH 118 6 HOH HOH 261 B HOH 119 6 HOH HOH 262 B HOH 125 6 HOH HOH 263 B HOH 130 6 HOH HOH 264 B HOH 131 6 HOH HOH 265 B HOH 133 6 HOH HOH 266 B HOH 134 6 HOH HOH 267 B HOH 135 6 HOH HOH 268 B HOH 136 6 HOH HOH 269 B HOH 142 6 HOH HOH 270 B HOH 143 6 HOH HOH 271 B HOH 126 6 HOH HOH 126 D HOH 127 6 HOH HOH 127 F n 1 30 A n 2 31 A n 3 32 A n 4 33 A n 5 34 A n 6 35 A n 7 36 A n 8 37 A n 9 38 A n 10 39 A n 11 40 A n 12 41 A n 13 42 A n 14 43 A n 15 44 A n 16 45 A n 17 46 A n 18 47 A n 19 48 A n 20 49 A n 21 50 A n 22 51 A n 23 52 A n 24 53 A n 25 54 A n 26 55 A n 27 56 A SER 57 n 28 SER 57 A PRO 58 n 29 PRO 58 A GLY 59 n 30 GLY 59 A ILE 60 n 31 ILE 60 A TRP 61 n 32 TRP 61 A GLN 62 n 33 GLN 62 A LEU 63 n 34 LEU 63 A ASP 64 n 35 ASP 64 A CYS 65 n 36 CYS 65 A THR 66 n 37 THR 66 A HIS 67 n 38 HIS 67 A LEU 68 n 39 LEU 68 A GLU 69 n 40 GLU 69 A GLY 70 n 41 GLY 70 A LYS 71 n 42 LYS 71 A VAL 72 n 43 VAL 72 A ILE 73 n 44 ILE 73 A LEU 74 n 45 LEU 74 A VAL 75 n 46 VAL 75 A ALA 76 n 47 ALA 76 A VAL 77 n 48 VAL 77 A HIS 78 n 49 HIS 78 A VAL 79 n 50 VAL 79 A ALA 80 n 51 ALA 80 A SER 81 n 52 SER 81 A GLY 82 n 53 GLY 82 A TYR 83 n 54 TYR 83 A ILE 84 n 55 ILE 84 A GLU 85 n 56 GLU 85 A ALA 86 n 57 ALA 86 A GLU 87 n 58 GLU 87 A VAL 88 n 59 VAL 88 A ILE 89 n 60 ILE 89 A PRO 90 n 61 PRO 90 A ALA 91 n 62 ALA 91 A GLU 92 n 63 GLU 92 A THR 93 n 64 THR 93 A GLY 94 n 65 GLY 94 A GLN 95 n 66 GLN 95 A GLU 96 n 67 GLU 96 A THR 97 n 68 THR 97 A ALA 98 n 69 ALA 98 A TYR 99 n 70 TYR 99 A PHE 100 n 71 PHE 100 A LEU 101 n 72 LEU 101 A LEU 102 n 73 LEU 102 A LYS 103 n 74 LYS 103 A LEU 104 n 75 LEU 104 A ALA 105 n 76 ALA 105 A GLY 106 n 77 GLY 106 A ARG 107 n 78 ARG 107 A TRP 108 n 79 TRP 108 A PRO 109 n 80 PRO 109 A VAL 110 n 81 VAL 110 A LYS 111 n 82 LYS 111 A THR 112 n 83 THR 112 A VAL 113 n 84 VAL 113 A HIS 114 n 85 HIS 114 A THR 115 n 86 THR 115 A ASP 116 n 87 ASP 116 A ASN 117 n 88 ASN 117 A GLY 118 n 89 GLY 118 A SER 119 n 90 SER 119 A ASN 120 n 91 ASN 120 A PHE 121 n 92 PHE 121 A THR 122 n 93 THR 122 A SER 123 n 94 SER 123 A THR 124 n 95 THR 124 A THR 125 n 96 THR 125 A VAL 126 n 97 VAL 126 A LYS 127 n 98 LYS 127 A ALA 128 n 99 ALA 128 A ALA 129 n 100 ALA 129 A CYS 130 n 101 CYS 130 A TRP 131 n 102 TRP 131 A TRP 132 n 103 TRP 132 A ALA 133 n 104 ALA 133 A GLY 134 n 105 GLY 134 A ILE 135 n 106 ILE 135 A LYS 136 n 107 LYS 136 A GLN 137 n 108 GLN 137 A GLU 138 n 109 GLU 138 A ASP 139 n 110 ASP 139 A GLY 140 n 111 GLY 140 A ILE 141 n 112 ILE 141 A PRO 142 n 113 PRO 142 A TYR 143 n 114 TYR 143 A ASN 144 n 115 ASN 144 A PRO 145 n 116 PRO 145 A GLN 146 n 117 GLN 146 A SER 147 n 118 SER 147 A GLN 148 n 119 GLN 148 A GLY 149 n 120 GLY 149 A VAL 150 n 121 VAL 150 A ILE 151 n 122 ILE 151 A GLU 152 n 123 GLU 152 A SER 153 n 124 SER 153 A MET 154 n 125 MET 154 A ASN 155 n 126 ASN 155 A LYS 156 n 127 LYS 156 A GLU 157 n 128 GLU 157 A LEU 158 n 129 LEU 158 A LYS 159 n 130 LYS 159 A LYS 160 n 131 LYS 160 A ILE 161 n 132 ILE 161 A ILE 162 n 133 ILE 162 A GLY 163 n 134 GLY 163 A GLN 164 n 135 GLN 164 A VAL 165 n 136 VAL 165 A ARG 166 n 137 ARG 166 A ASP 167 n 138 ASP 167 A GLN 168 n 139 GLN 168 A ALA 169 n 140 ALA 169 A GLU 170 n 141 GLU 170 A HIS 171 n 142 HIS 171 A LEU 172 n 143 LEU 172 A LYS 173 n 144 LYS 173 A THR 174 n 145 THR 174 A ALA 175 n 146 ALA 175 A VAL 176 n 147 VAL 176 A GLN 177 n 148 GLN 177 A MET 178 n 149 MET 178 A ALA 179 n 150 ALA 179 A VAL 180 n 151 VAL 180 A PHE 181 n 152 PHE 181 A ILE 182 n 153 ILE 182 A HIS 183 n 154 HIS 183 A ASN 184 n 155 ASN 184 A HIS 185 n 156 HIS 185 A LYS 186 n 157 LYS 186 A ARG 187 n 158 ARG 187 A LYS 188 n 159 LYS 188 A n 160 189 A n 161 190 A n 162 191 A n 163 192 A GLY 193 n 164 GLY 193 A TYR 194 n 165 TYR 194 A SER 195 n 166 SER 195 A ALA 196 n 167 ALA 196 A GLY 197 n 168 GLY 197 A GLU 198 n 169 GLU 198 A ARG 199 n 170 ARG 199 A ILE 200 n 171 ILE 200 A VAL 201 n 172 VAL 201 A ASP 202 n 173 ASP 202 A ILE 203 n 174 ILE 203 A ILE 204 n 175 ILE 204 A ALA 205 n 176 ALA 205 A THR 206 n 177 THR 206 A ASP 207 n 178 ASP 207 A ILE 208 n 179 ILE 208 A GLN 209 n 180 GLN 209 A n 181 210 A n 182 211 A n 183 212 A n 1 30 B n 2 31 B n 3 32 B n 4 33 B n 5 34 B n 6 35 B n 7 36 B n 8 37 B n 9 38 B n 10 39 B n 11 40 B n 12 41 B n 13 42 B n 14 43 B n 15 44 B n 16 45 B n 17 46 B n 18 47 B n 19 48 B n 20 49 B n 21 50 B n 22 51 B n 23 52 B n 24 53 B n 25 54 B n 26 55 B n 27 56 B SER 57 n 28 SER 57 B PRO 58 n 29 PRO 58 B GLY 59 n 30 GLY 59 B ILE 60 n 31 ILE 60 B TRP 61 n 32 TRP 61 B GLN 62 n 33 GLN 62 B LEU 63 n 34 LEU 63 B ASP 64 n 35 ASP 64 B CYS 65 n 36 CYS 65 B THR 66 n 37 THR 66 B HIS 67 n 38 HIS 67 B LEU 68 n 39 LEU 68 B GLU 69 n 40 GLU 69 B GLY 70 n 41 GLY 70 B LYS 71 n 42 LYS 71 B VAL 72 n 43 VAL 72 B ILE 73 n 44 ILE 73 B LEU 74 n 45 LEU 74 B VAL 75 n 46 VAL 75 B ALA 76 n 47 ALA 76 B VAL 77 n 48 VAL 77 B HIS 78 n 49 HIS 78 B VAL 79 n 50 VAL 79 B ALA 80 n 51 ALA 80 B SER 81 n 52 SER 81 B GLY 82 n 53 GLY 82 B TYR 83 n 54 TYR 83 B ILE 84 n 55 ILE 84 B GLU 85 n 56 GLU 85 B ALA 86 n 57 ALA 86 B GLU 87 n 58 GLU 87 B VAL 88 n 59 VAL 88 B ILE 89 n 60 ILE 89 B PRO 90 n 61 PRO 90 B ALA 91 n 62 ALA 91 B GLU 92 n 63 GLU 92 B THR 93 n 64 THR 93 B GLY 94 n 65 GLY 94 B GLN 95 n 66 GLN 95 B GLU 96 n 67 GLU 96 B THR 97 n 68 THR 97 B ALA 98 n 69 ALA 98 B TYR 99 n 70 TYR 99 B PHE 100 n 71 PHE 100 B LEU 101 n 72 LEU 101 B LEU 102 n 73 LEU 102 B LYS 103 n 74 LYS 103 B LEU 104 n 75 LEU 104 B ALA 105 n 76 ALA 105 B GLY 106 n 77 GLY 106 B ARG 107 n 78 ARG 107 B TRP 108 n 79 TRP 108 B PRO 109 n 80 PRO 109 B VAL 110 n 81 VAL 110 B LYS 111 n 82 LYS 111 B THR 112 n 83 THR 112 B VAL 113 n 84 VAL 113 B HIS 114 n 85 HIS 114 B THR 115 n 86 THR 115 B ASP 116 n 87 ASP 116 B ASN 117 n 88 ASN 117 B GLY 118 n 89 GLY 118 B SER 119 n 90 SER 119 B ASN 120 n 91 ASN 120 B PHE 121 n 92 PHE 121 B THR 122 n 93 THR 122 B SER 123 n 94 SER 123 B THR 124 n 95 THR 124 B THR 125 n 96 THR 125 B VAL 126 n 97 VAL 126 B LYS 127 n 98 LYS 127 B ALA 128 n 99 ALA 128 B ALA 129 n 100 ALA 129 B CYS 130 n 101 CYS 130 B TRP 131 n 102 TRP 131 B TRP 132 n 103 TRP 132 B ALA 133 n 104 ALA 133 B GLY 134 n 105 GLY 134 B ILE 135 n 106 ILE 135 B LYS 136 n 107 LYS 136 B GLN 137 n 108 GLN 137 B GLU 138 n 109 GLU 138 B ASP 139 n 110 ASP 139 B GLY 140 n 111 GLY 140 B ILE 141 n 112 ILE 141 B PRO 142 n 113 PRO 142 B TYR 143 n 114 TYR 143 B ASN 144 n 115 ASN 144 B PRO 145 n 116 PRO 145 B GLN 146 n 117 GLN 146 B SER 147 n 118 SER 147 B GLN 148 n 119 GLN 148 B GLY 149 n 120 GLY 149 B VAL 150 n 121 VAL 150 B ILE 151 n 122 ILE 151 B GLU 152 n 123 GLU 152 B SER 153 n 124 SER 153 B MET 154 n 125 MET 154 B ASN 155 n 126 ASN 155 B LYS 156 n 127 LYS 156 B GLU 157 n 128 GLU 157 B LEU 158 n 129 LEU 158 B LYS 159 n 130 LYS 159 B LYS 160 n 131 LYS 160 B ILE 161 n 132 ILE 161 B ILE 162 n 133 ILE 162 B GLY 163 n 134 GLY 163 B GLN 164 n 135 GLN 164 B VAL 165 n 136 VAL 165 B ARG 166 n 137 ARG 166 B ASP 167 n 138 ASP 167 B GLN 168 n 139 GLN 168 B ALA 169 n 140 ALA 169 B GLU 170 n 141 GLU 170 B HIS 171 n 142 HIS 171 B LEU 172 n 143 LEU 172 B LYS 173 n 144 LYS 173 B THR 174 n 145 THR 174 B ALA 175 n 146 ALA 175 B VAL 176 n 147 VAL 176 B GLN 177 n 148 GLN 177 B MET 178 n 149 MET 178 B ALA 179 n 150 ALA 179 B VAL 180 n 151 VAL 180 B PHE 181 n 152 PHE 181 B ILE 182 n 153 ILE 182 B HIS 183 n 154 HIS 183 B ASN 184 n 155 ASN 184 B HIS 185 n 156 HIS 185 B LYS 186 n 157 LYS 186 B ARG 187 n 158 ARG 187 B LYS 188 n 159 LYS 188 B n 160 189 B n 161 190 B n 162 191 B n 163 192 B GLY 193 n 164 GLY 193 B TYR 194 n 165 TYR 194 B SER 195 n 166 SER 195 B ALA 196 n 167 ALA 196 B GLY 197 n 168 GLY 197 B GLU 198 n 169 GLU 198 B ARG 199 n 170 ARG 199 B ILE 200 n 171 ILE 200 B VAL 201 n 172 VAL 201 B ASP 202 n 173 ASP 202 B ILE 203 n 174 ILE 203 B ILE 204 n 175 ILE 204 B ALA 205 n 176 ALA 205 B THR 206 n 177 THR 206 B ASP 207 n 178 ASP 207 B ILE 208 n 179 ILE 208 B GLN 209 n 180 GLN 209 B n 181 210 B n 182 211 B n 183 212 B SER 1 n 1 SER 1 D LEU 2 n 2 LEU 2 D LYS 3 n 3 LYS 3 D ILE 4 n 4 ILE 4 D ASP 5 n 5 ASP 5 D ASN 6 n 6 ASN 6 D GLU 7 n 7 GLU 7 D ASP 8 n 8 ASP 8 D SER 1 n 1 SER 1 F LEU 2 n 2 LEU 2 F LYS 3 n 3 LYS 3 F ILE 4 n 4 ILE 4 F ASP 5 n 5 ASP 5 F ASN 6 n 6 ASN 6 F GLU 7 n 7 GLU 7 F ASP 8 n 8 ASP 8 F author_and_software_defined_assembly PISA 4 tetrameric 4620 -25 14280 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 89 A O ILE 60 A N VAL 72 A N VAL 43 A O ILE 73 A O ILE 44 A N THR 66 A N THR 37 A N LEU 63 A N LEU 34 A O HIS 114 A O HIS 85 A N VAL 113 A N VAL 84 A O GLU 138 A O GLU 109 B O ILE 89 B O ILE 60 B N VAL 72 B N VAL 43 B O VAL 77 B O VAL 48 B N GLN 62 B N GLN 33 B N LEU 63 B N LEU 34 B O HIS 114 B O HIS 85 B N VAL 113 B N VAL 84 B O GLU 138 B O GLU 109 1 A MET 30 A MET 1 1 Y 1 A GLY 31 A GLY 2 1 Y 1 A SER 32 A SER 3 1 Y 1 A SER 33 A SER 4 1 Y 1 A HIS 34 A HIS 5 1 Y 1 A HIS 35 A HIS 6 1 Y 1 A HIS 36 A HIS 7 1 Y 1 A HIS 37 A HIS 8 1 Y 1 A HIS 38 A HIS 9 1 Y 1 A HIS 39 A HIS 10 1 Y 1 A SER 40 A SER 11 1 Y 1 A SER 41 A SER 12 1 Y 1 A GLY 42 A GLY 13 1 Y 1 A LEU 43 A LEU 14 1 Y 1 A VAL 44 A VAL 15 1 Y 1 A PRO 45 A PRO 16 1 Y 1 A ARG 46 A ARG 17 1 Y 1 A GLY 47 A GLY 18 1 Y 1 A SER 48 A SER 19 1 Y 1 A HIS 49 A HIS 20 1 Y 1 A MET 50 A MET 21 1 Y 1 A HIS 51 A HIS 22 1 Y 1 A GLY 52 A GLY 23 1 Y 1 A GLN 53 A GLN 24 1 Y 1 A VAL 54 A VAL 25 1 Y 1 A ASP 55 A ASP 26 1 Y 1 A SER 56 A SER 27 1 Y 1 A GLY 189 A GLY 160 1 Y 1 A GLY 190 A GLY 161 1 Y 1 A ILE 191 A ILE 162 1 Y 1 A GLY 192 A GLY 163 1 Y 1 A THR 210 A THR 181 1 Y 1 A LYS 211 A LYS 182 1 Y 1 A GLU 212 A GLU 183 1 Y 1 B MET 30 B MET 1 1 Y 1 B GLY 31 B GLY 2 1 Y 1 B SER 32 B SER 3 1 Y 1 B SER 33 B SER 4 1 Y 1 B HIS 34 B HIS 5 1 Y 1 B HIS 35 B HIS 6 1 Y 1 B HIS 36 B HIS 7 1 Y 1 B HIS 37 B HIS 8 1 Y 1 B HIS 38 B HIS 9 1 Y 1 B HIS 39 B HIS 10 1 Y 1 B SER 40 B SER 11 1 Y 1 B SER 41 B SER 12 1 Y 1 B GLY 42 B GLY 13 1 Y 1 B LEU 43 B LEU 14 1 Y 1 B VAL 44 B VAL 15 1 Y 1 B PRO 45 B PRO 16 1 Y 1 B ARG 46 B ARG 17 1 Y 1 B GLY 47 B GLY 18 1 Y 1 B SER 48 B SER 19 1 Y 1 B HIS 49 B HIS 20 1 Y 1 B MET 50 B MET 21 1 Y 1 B HIS 51 B HIS 22 1 Y 1 B GLY 52 B GLY 23 1 Y 1 B GLN 53 B GLN 24 1 Y 1 B VAL 54 B VAL 25 1 Y 1 B ASP 55 B ASP 26 1 Y 1 B SER 56 B SER 27 1 Y 1 B GLY 189 B GLY 160 1 Y 1 B GLY 190 B GLY 161 1 Y 1 B ILE 191 B ILE 162 1 Y 1 B GLY 192 B GLY 163 1 Y 1 B THR 210 B THR 181 1 Y 1 B LYS 211 B LYS 182 1 Y 1 B GLU 212 B GLU 183 1 Y 1 A A OE1 O GLU HOH 87 229 1.67 B 1 B B OE1 O GLU HOH 87 240 1.78 B 1 A B O O HOH HOH 221 264 1.98 1 A A O O HOH HOH 238 270 2.03 1 B B O O HOH HOH 256 265 2.05 1 A B O O HOH HOH 227 269 2.05 1 B B O O HOH HOH 251 262 2.08 1 A A O O HOH HOH 239 258 2.15 1 -10.24 1.70 111.00 100.76 A A A CB CG CD2 LEU LEU LEU 74 74 74 N 1 B B OE2 O GLU HOH 152 228 2.09 1_555 3_564 1 D ASN 6 -168.98 84.11 1 F ASN 6 -165.01 85.52 75.310 23.7749 7.010 0.2100 0.1000 0.0000 0.2100 0.0000 -0.3100 0.9660 0.9490 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: REFINED INDIVIDUALLY 0.1993 0.1587 0.1608 1.7500 61.2700 1880 37630 5.0000 99.9900 1.000 0.200 1.7510 0.0580 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1000 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 1.7500 61.2700 141 2637 50 0 2446 0.030 0.022 2767 2.318 1.959 3798 6.309 5.000 366 29.933 25.763 118 14.552 15.000 496 10.671 15.000 8 0.198 0.200 431 0.013 0.021 2086 0.3300 0.2670 1.7950 150 2678 2828 20 100.0000 1.75 61.3 3AVK 37635 37635 1 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0062 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 Integrase, LEDGF peptide Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N 6 N N A THR 93 A THR 64 HELX_P A TRP 108 A TRP 79 1 1 16 A ASN 117 A ASN 88 HELX_P A SER 123 A SER 94 1 2 7 A SER 123 A SER 94 HELX_P A ALA 133 A ALA 104 1 3 11 A PRO 145 A PRO 116 HELX_P A ARG 166 A ARG 137 1 4 22 A ASP 167 A ASP 138 HELX_P A ALA 169 A ALA 140 5 5 3 A HIS 171 A HIS 142 HELX_P A LYS 186 A LYS 157 1 6 16 A SER 195 A SER 166 HELX_P A GLN 209 A GLN 180 1 7 15 B THR 93 B THR 64 HELX_P B TRP 108 B TRP 79 1 8 16 B ASN 117 B ASN 88 HELX_P B SER 123 B SER 94 1 9 7 B SER 123 B SER 94 HELX_P B ALA 133 B ALA 104 1 10 11 B PRO 145 B PRO 116 HELX_P B ARG 166 B ARG 137 1 11 22 B ASP 167 B ASP 138 HELX_P B ALA 169 B ALA 140 5 12 3 B HIS 171 B HIS 142 HELX_P B LYS 186 B LYS 157 1 13 16 B SER 195 B SER 166 HELX_P B GLN 209 B GLN 180 1 14 15 covale 1.338 D ASP 8 C C ASP 8 1_555 D SER 1 C N SER 1 1_555 covale 1.340 F ASP 8 D C ASP 8 1_555 F SER 1 D N SER 1 1_555 RECOMBINATION/INHIBITOR protein-protein interactions, HIV, RECOMBINATION-INHIBITOR complex POL_HV1N5 UNP 1 1197 P12497 MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA CWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQ TKE 3AVK PDB 2 3AVK 1197 1359 3AVK 50 212 P12497 A 1 21 183 1197 1359 3AVK 50 212 P12497 B 1 21 183 1 8 3AVK 1 8 3AVK D 2 1 8 1 8 3AVK 1 8 3AVK F 2 1 8 1 EXPRESSION TAG MET 30 3AVK A P12497 UNP 1 1 EXPRESSION TAG GLY 31 3AVK A P12497 UNP 2 1 EXPRESSION TAG SER 32 3AVK A P12497 UNP 3 1 EXPRESSION TAG SER 33 3AVK A P12497 UNP 4 1 EXPRESSION TAG HIS 34 3AVK A P12497 UNP 5 1 EXPRESSION TAG HIS 35 3AVK A P12497 UNP 6 1 EXPRESSION TAG HIS 36 3AVK A P12497 UNP 7 1 EXPRESSION TAG HIS 37 3AVK A P12497 UNP 8 1 EXPRESSION TAG HIS 38 3AVK A P12497 UNP 9 1 EXPRESSION TAG HIS 39 3AVK A P12497 UNP 10 1 EXPRESSION TAG SER 40 3AVK A P12497 UNP 11 1 EXPRESSION TAG SER 41 3AVK A P12497 UNP 12 1 EXPRESSION TAG GLY 42 3AVK A P12497 UNP 13 1 EXPRESSION TAG LEU 43 3AVK A P12497 UNP 14 1 EXPRESSION TAG VAL 44 3AVK A P12497 UNP 15 1 EXPRESSION TAG PRO 45 3AVK A P12497 UNP 16 1 EXPRESSION TAG ARG 46 3AVK A P12497 UNP 17 1 EXPRESSION TAG GLY 47 3AVK A P12497 UNP 18 1 EXPRESSION TAG SER 48 3AVK A P12497 UNP 19 1 EXPRESSION TAG HIS 49 3AVK A P12497 UNP 20 1 CYS ENGINEERED MUTATION SER 56 3AVK A P12497 UNP 1203 27 1 PHE ENGINEERED MUTATION ASP 139 3AVK A P12497 UNP 1286 110 1 PHE ENGINEERED MUTATION HIS 185 3AVK A P12497 UNP 1332 156 2 EXPRESSION TAG MET 30 3AVK B P12497 UNP 1 2 EXPRESSION TAG GLY 31 3AVK B P12497 UNP 2 2 EXPRESSION TAG SER 32 3AVK B P12497 UNP 3 2 EXPRESSION TAG SER 33 3AVK B P12497 UNP 4 2 EXPRESSION TAG HIS 34 3AVK B P12497 UNP 5 2 EXPRESSION TAG HIS 35 3AVK B P12497 UNP 6 2 EXPRESSION TAG HIS 36 3AVK B P12497 UNP 7 2 EXPRESSION TAG HIS 37 3AVK B P12497 UNP 8 2 EXPRESSION TAG HIS 38 3AVK B P12497 UNP 9 2 EXPRESSION TAG HIS 39 3AVK B P12497 UNP 10 2 EXPRESSION TAG SER 40 3AVK B P12497 UNP 11 2 EXPRESSION TAG SER 41 3AVK B P12497 UNP 12 2 EXPRESSION TAG GLY 42 3AVK B P12497 UNP 13 2 EXPRESSION TAG LEU 43 3AVK B P12497 UNP 14 2 EXPRESSION TAG VAL 44 3AVK B P12497 UNP 15 2 EXPRESSION TAG PRO 45 3AVK B P12497 UNP 16 2 EXPRESSION TAG ARG 46 3AVK B P12497 UNP 17 2 EXPRESSION TAG GLY 47 3AVK B P12497 UNP 18 2 EXPRESSION TAG SER 48 3AVK B P12497 UNP 19 2 EXPRESSION TAG HIS 49 3AVK B P12497 UNP 20 2 CYS ENGINEERED MUTATION SER 56 3AVK B P12497 UNP 1203 27 2 PHE ENGINEERED MUTATION ASP 139 3AVK B P12497 UNP 1286 110 2 PHE ENGINEERED MUTATION HIS 185 3AVK B P12497 UNP 1332 156 5 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel parallel A ILE 84 A ILE 55 A ILE 89 A ILE 60 A LYS 71 A LYS 42 A HIS 78 A HIS 49 A ILE 60 A ILE 31 A LEU 68 A LEU 39 A THR 112 A THR 83 A HIS 114 A HIS 85 A LYS 136 A LYS 107 A GLU 138 A GLU 109 B ILE 84 B ILE 55 B ILE 89 B ILE 60 B LYS 71 B LYS 42 B HIS 78 B HIS 49 B ILE 60 B ILE 31 B LEU 68 B LEU 39 B THR 112 B THR 83 B HIS 114 B HIS 85 B LYS 136 B LYS 107 B GLU 138 B GLU 109 BINDING SITE FOR RESIDUE SO4 A 2 Software 7 BINDING SITE FOR RESIDUE SO4 A 4 Software 6 BINDING SITE FOR RESIDUE SO4 A 5 Software 8 BINDING SITE FOR RESIDUE SO4 A 7 Software 9 BINDING SITE FOR RESIDUE ACY A 1 Software 6 BINDING SITE FOR RESIDUE CL A 213 Software 2 BINDING SITE FOR RESIDUE SO4 B 1 Software 6 BINDING SITE FOR RESIDUE SO4 B 3 Software 6 BINDING SITE FOR RESIDUE SO4 B 6 Software 8 BINDING SITE FOR RESIDUE SO4 B 8 Software 7 BINDING SITE FOR RESIDUE ACY B 2 Software 6 BINDING SITE FOR RESIDUE CL B 213 Software 2 BINDING SITE FOR CHAIN D OF LEDGF PEPTIDE Software 14 BINDING SITE FOR CHAIN F OF LEDGF PEPTIDE Software 14 A THR 66 A THR 37 7 1_555 A HIS 67 A HIS 38 7 1_555 A LYS 111 A LYS 82 7 2_565 A LYS 136 A LYS 107 7 2_565 A LYS 159 A LYS 130 7 1_555 A HOH 220 Q HOH 7 1_555 A HOH 236 Q HOH 7 1_555 A LYS 71 A LYS 42 6 1_555 A ARG 166 A ARG 137 6 1_555 A HIS 171 A HIS 142 6 1_555 A LEU 172 A LEU 143 6 1_555 A HOH 222 Q HOH 6 1_555 A HOH 235 Q HOH 6 1_555 A HOH 19 Q HOH 8 1_555 A GLY 94 A GLY 65 8 1_555 A SER 123 A SER 94 8 1_555 A THR 124 A THR 95 8 1_555 A THR 125 A THR 96 8 1_555 A HOH 218 Q HOH 8 1_555 A HOH 248 Q HOH 8 1_555 D HOH 126 S HOH 8 1_555 A GLU 85 A GLU 56 9 1_555 A GLU 87 A GLU 58 9 1_555 A PHE 100 A PHE 71 9 1_555 A LYS 103 A LYS 74 9 1_555 A ARG 107 A ARG 78 9 1_555 A HOH 243 Q HOH 9 1_555 B SO4 8 N SO4 9 1_555 B LYS 103 B LYS 74 9 1_555 B ARG 107 B ARG 78 9 1_555 A ALA 105 A ALA 76 6 1_555 A GLY 106 A GLY 77 6 1_555 A TRP 108 A TRP 79 6 1_555 B ASN 184 B ASN 155 6 1_555 B HIS 185 B HIS 156 6 1_555 B GLY 197 B GLY 168 6 1_555 A VAL 72 A VAL 43 2 1_555 A GLU 92 A GLU 63 2 1_555 B THR 66 B THR 37 6 1_555 B HIS 67 B HIS 38 6 1_555 B LYS 111 B LYS 82 6 3_564 B LYS 136 B LYS 107 6 3_564 B LYS 159 B LYS 130 6 1_555 B HOH 228 R HOH 6 3_564 B LYS 71 B LYS 42 6 1_555 B ARG 166 B ARG 137 6 1_555 B HIS 171 B HIS 142 6 1_555 B LEU 172 B LEU 143 6 1_555 B HOH 234 R HOH 6 1_555 B HOH 236 R HOH 6 1_555 B HOH 26 R HOH 8 1_555 B GLY 94 B GLY 65 8 1_555 B SER 123 B SER 94 8 1_555 B THR 124 B THR 95 8 1_555 B THR 125 B THR 96 8 1_555 B HOH 217 R HOH 8 1_555 B HOH 251 R HOH 8 1_555 F HOH 127 T HOH 8 1_555 A SO4 7 H SO4 7 1_555 A ARG 107 A ARG 78 7 1_555 B GLU 85 B GLU 56 7 1_555 B ALA 86 B ALA 57 7 1_555 B GLU 87 B GLU 58 7 1_555 B PHE 100 B PHE 71 7 1_555 B LYS 103 B LYS 74 7 1_555 A ASN 184 A ASN 155 6 1_555 A HIS 185 A HIS 156 6 1_555 A GLY 197 A GLY 168 6 1_555 B ALA 105 B ALA 76 6 1_555 B GLY 106 B GLY 77 6 1_555 B TRP 108 B TRP 79 6 1_555 B VAL 72 B VAL 43 2 1_555 B GLU 92 B GLU 63 2 1_555 A GLN 95 A GLN 66 14 1_555 A THR 125 A THR 96 14 1_555 A ALA 128 A ALA 99 14 1_555 A TRP 131 A TRP 102 14 1_555 A ILE 141 A ILE 112 14 3_454 A TYR 143 A TYR 114 14 3_454 B ASP 167 B ASP 138 14 1_555 B GLN 168 B GLN 139 14 1_555 B ALA 169 B ALA 140 14 1_555 B GLU 170 B GLU 141 14 1_555 B HIS 171 B HIS 142 14 1_555 B THR 174 B THR 145 14 1_555 B MET 178 B MET 149 14 1_555 D HOH 126 S HOH 14 1_555 A ASP 167 A ASP 138 14 1_555 A GLN 168 A GLN 139 14 1_555 A ALA 169 A ALA 140 14 1_555 A GLU 170 A GLU 141 14 1_555 A HIS 171 A HIS 142 14 1_555 A THR 174 A THR 145 14 1_555 A HOH 266 Q HOH 14 1_555 B GLN 95 B GLN 66 14 1_555 B THR 125 B THR 96 14 1_555 B ALA 128 B ALA 99 14 1_555 B TRP 131 B TRP 102 14 1_555 B ILE 141 B ILE 112 14 2_665 B TYR 143 B TYR 114 14 2_665 F HOH 127 T HOH 14 1_555 144 P 31