0.014131 0.008158 0.000000 0.000000 0.016317 0.000000 0.000000 0.000000 0.014864 0.000000 0.000000 0.000000 Peat, T.S. Deadman, J.J. Newman, J. Rhodes, D.I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 70.768 70.768 67.279 C2 H4 O2 60.052 ACETIC ACID non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GE Chembiochem 1439-4227 12 2311 2315 10.1002/cbic.201100350 21850718 Crystal structures of novel allosteric peptide inhibitors of HIV integrase identify new interactions at the LEDGF binding site. 2011 100 1 CCD 2009-12-14 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.96 1.0 MX2 Australian Synchrotron 0.96 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 20044.672 Integrase CCD domain (UNP RESIDUES 1197-1359) C56S, F139D, F185H 2 man polymer 962.061 LEDGF peptide 2 syn polymer 96.063 SULFATE ION 8 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 60.052 ACETIC ACID 4 syn non-polymer 18.015 water 147 nat water IN lens epithelial derived growth factor peptide no no MGSSHHHHHHSSGLVPRGSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWP VKTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG GIGGYSAGERIVDIIATDIQTKE MGSSHHHHHHSSGLVPRGSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWP VKTVHTDNGSNFTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNHKRKG GIGGYSAGERIVDIIATDIQTKE A,B polypeptide(L) no no SRKIDNLD SRKIDNLD D,F polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-1 NEW YORK-5 ISOLATE sample gag-pol 11698 Human immunodeficiency virus type 1 562 Escherichia coli BL21(DE3) plasmid pET28 1 2.32 46.87 VAPOR DIFFUSION, SITTING DROP 40mM Tris pH 8.0, 250mM NaCl, 30mM MgCl2, 5mM DTT, 1.6-2.0M ammonium sulfate, 100mM sodium acetate buffer pH 5.0-5.5, vapor diffusion, sitting drop, temperature 293K 5.0-5.5 293 repository Initial release Other Database references 1 0 2012-01-18 1 1 2012-12-12 1 2 2013-06-19 PDBJ Y PDBJ 2011-03-05 REL REL SO4 SULFATE ION CL CHLORIDE ION ACY ACETIC ACID HOH water chemical synthsis 9606 Human Homo sapiens sample Enzyme inhibitor SRKIDNLD peptide Cyclic peptide SO4 2 3 SO4 SO4 2 A SO4 4 3 SO4 SO4 4 A SO4 6 3 SO4 SO4 6 A SO4 7 3 SO4 SO4 7 A CL 2 4 CL CL 213 A ACY 2 5 ACY ACY 214 A ACY 3 5 ACY ACY 3 A ACY 4 5 ACY ACY 215 A SO4 1 3 SO4 SO4 1 B SO4 3 3 SO4 SO4 3 B SO4 5 3 SO4 SO4 5 B SO4 8 3 SO4 SO4 8 B CL 1 4 CL CL 213 B ACY 1 5 ACY ACY 214 B HOH 5 6 HOH HOH 5 A HOH 8 6 HOH HOH 8 A HOH 9 6 HOH HOH 9 A HOH 12 6 HOH HOH 12 A HOH 16 6 HOH HOH 16 A HOH 17 6 HOH HOH 17 A HOH 19 6 HOH HOH 19 A HOH 20 6 HOH HOH 20 A HOH 21 6 HOH HOH 21 A HOH 23 6 HOH HOH 23 A HOH 24 6 HOH HOH 24 A HOH 28 6 HOH HOH 28 A HOH 29 6 HOH HOH 29 A HOH 2 6 HOH HOH 216 A HOH 3 6 HOH HOH 217 A HOH 32 6 HOH HOH 218 A HOH 33 6 HOH HOH 219 A HOH 35 6 HOH HOH 220 A HOH 36 6 HOH HOH 221 A HOH 40 6 HOH HOH 222 A HOH 43 6 HOH HOH 223 A HOH 44 6 HOH HOH 224 A HOH 45 6 HOH HOH 225 A HOH 50 6 HOH HOH 226 A HOH 51 6 HOH HOH 227 A HOH 53 6 HOH HOH 228 A HOH 56 6 HOH HOH 229 A HOH 57 6 HOH HOH 230 A HOH 59 6 HOH HOH 231 A HOH 61 6 HOH HOH 232 A HOH 63 6 HOH HOH 233 A HOH 64 6 HOH HOH 234 A HOH 65 6 HOH HOH 235 A HOH 66 6 HOH HOH 236 A HOH 67 6 HOH HOH 237 A HOH 68 6 HOH HOH 238 A HOH 70 6 HOH HOH 239 A HOH 71 6 HOH HOH 240 A HOH 73 6 HOH HOH 241 A HOH 74 6 HOH HOH 242 A HOH 76 6 HOH HOH 243 A HOH 77 6 HOH HOH 244 A HOH 80 6 HOH HOH 245 A HOH 83 6 HOH HOH 246 A HOH 85 6 HOH HOH 247 A HOH 87 6 HOH HOH 248 A HOH 91 6 HOH HOH 249 A HOH 93 6 HOH HOH 250 A HOH 97 6 HOH HOH 251 A HOH 98 6 HOH HOH 252 A HOH 102 6 HOH HOH 253 A HOH 105 6 HOH HOH 254 A HOH 106 6 HOH HOH 255 A HOH 107 6 HOH HOH 256 A HOH 108 6 HOH HOH 257 A HOH 111 6 HOH HOH 258 A HOH 112 6 HOH HOH 259 A HOH 113 6 HOH HOH 260 A HOH 114 6 HOH HOH 261 A HOH 118 6 HOH HOH 262 A HOH 119 6 HOH HOH 263 A HOH 129 6 HOH HOH 264 A HOH 130 6 HOH HOH 265 A HOH 132 6 HOH HOH 266 A HOH 133 6 HOH HOH 267 A HOH 134 6 HOH HOH 268 A HOH 140 6 HOH HOH 269 A HOH 142 6 HOH HOH 270 A HOH 143 6 HOH HOH 271 A HOH 147 6 HOH HOH 272 A HOH 4 6 HOH HOH 4 B HOH 6 6 HOH HOH 6 B HOH 7 6 HOH HOH 7 B HOH 10 6 HOH HOH 10 B HOH 11 6 HOH HOH 11 B HOH 13 6 HOH HOH 13 B HOH 14 6 HOH HOH 14 B HOH 15 6 HOH HOH 15 B HOH 18 6 HOH HOH 18 B HOH 22 6 HOH HOH 22 B HOH 25 6 HOH HOH 25 B HOH 26 6 HOH HOH 26 B HOH 27 6 HOH HOH 27 B HOH 1 6 HOH HOH 215 B HOH 30 6 HOH HOH 216 B HOH 31 6 HOH HOH 217 B HOH 34 6 HOH HOH 218 B HOH 37 6 HOH HOH 219 B HOH 38 6 HOH HOH 220 B HOH 39 6 HOH HOH 221 B HOH 41 6 HOH HOH 222 B HOH 42 6 HOH HOH 223 B HOH 46 6 HOH HOH 224 B HOH 47 6 HOH HOH 225 B HOH 48 6 HOH HOH 226 B HOH 49 6 HOH HOH 227 B HOH 52 6 HOH HOH 228 B HOH 54 6 HOH HOH 229 B HOH 55 6 HOH HOH 230 B HOH 58 6 HOH HOH 231 B HOH 60 6 HOH HOH 232 B HOH 62 6 HOH HOH 233 B HOH 69 6 HOH HOH 234 B HOH 72 6 HOH HOH 235 B HOH 75 6 HOH HOH 236 B HOH 78 6 HOH HOH 237 B HOH 79 6 HOH HOH 238 B HOH 81 6 HOH HOH 239 B HOH 82 6 HOH HOH 240 B HOH 84 6 HOH HOH 241 B HOH 86 6 HOH HOH 242 B HOH 88 6 HOH HOH 243 B HOH 89 6 HOH HOH 244 B HOH 90 6 HOH HOH 245 B HOH 92 6 HOH HOH 246 B HOH 94 6 HOH HOH 247 B HOH 95 6 HOH HOH 248 B HOH 96 6 HOH HOH 249 B HOH 99 6 HOH HOH 250 B HOH 100 6 HOH HOH 251 B HOH 101 6 HOH HOH 252 B HOH 103 6 HOH HOH 253 B HOH 104 6 HOH HOH 254 B HOH 109 6 HOH HOH 255 B HOH 110 6 HOH HOH 256 B HOH 115 6 HOH HOH 257 B HOH 116 6 HOH HOH 258 B HOH 117 6 HOH HOH 259 B HOH 120 6 HOH HOH 260 B HOH 121 6 HOH HOH 261 B HOH 122 6 HOH HOH 262 B HOH 123 6 HOH HOH 263 B HOH 124 6 HOH HOH 264 B HOH 125 6 HOH HOH 265 B HOH 126 6 HOH HOH 266 B HOH 127 6 HOH HOH 267 B HOH 128 6 HOH HOH 268 B HOH 131 6 HOH HOH 269 B HOH 135 6 HOH HOH 270 B HOH 136 6 HOH HOH 271 B HOH 137 6 HOH HOH 272 B HOH 138 6 HOH HOH 273 B HOH 139 6 HOH HOH 274 B HOH 145 6 HOH HOH 275 B HOH 146 6 HOH HOH 276 B HOH 141 6 HOH HOH 141 D HOH 144 6 HOH HOH 144 F n 1 30 A n 2 31 A n 3 32 A n 4 33 A n 5 34 A n 6 35 A n 7 36 A n 8 37 A n 9 38 A n 10 39 A n 11 40 A n 12 41 A n 13 42 A n 14 43 A n 15 44 A n 16 45 A n 17 46 A n 18 47 A n 19 48 A n 20 49 A n 21 50 A n 22 51 A n 23 52 A n 24 53 A n 25 54 A n 26 55 A n 27 56 A SER 57 n 28 SER 57 A PRO 58 n 29 PRO 58 A GLY 59 n 30 GLY 59 A ILE 60 n 31 ILE 60 A TRP 61 n 32 TRP 61 A GLN 62 n 33 GLN 62 A LEU 63 n 34 LEU 63 A ASP 64 n 35 ASP 64 A CYS 65 n 36 CYS 65 A THR 66 n 37 THR 66 A HIS 67 n 38 HIS 67 A LEU 68 n 39 LEU 68 A GLU 69 n 40 GLU 69 A GLY 70 n 41 GLY 70 A LYS 71 n 42 LYS 71 A VAL 72 n 43 VAL 72 A ILE 73 n 44 ILE 73 A LEU 74 n 45 LEU 74 A VAL 75 n 46 VAL 75 A ALA 76 n 47 ALA 76 A VAL 77 n 48 VAL 77 A HIS 78 n 49 HIS 78 A VAL 79 n 50 VAL 79 A ALA 80 n 51 ALA 80 A SER 81 n 52 SER 81 A GLY 82 n 53 GLY 82 A TYR 83 n 54 TYR 83 A ILE 84 n 55 ILE 84 A GLU 85 n 56 GLU 85 A ALA 86 n 57 ALA 86 A GLU 87 n 58 GLU 87 A VAL 88 n 59 VAL 88 A ILE 89 n 60 ILE 89 A PRO 90 n 61 PRO 90 A ALA 91 n 62 ALA 91 A GLU 92 n 63 GLU 92 A THR 93 n 64 THR 93 A GLY 94 n 65 GLY 94 A GLN 95 n 66 GLN 95 A GLU 96 n 67 GLU 96 A THR 97 n 68 THR 97 A ALA 98 n 69 ALA 98 A TYR 99 n 70 TYR 99 A PHE 100 n 71 PHE 100 A LEU 101 n 72 LEU 101 A LEU 102 n 73 LEU 102 A LYS 103 n 74 LYS 103 A LEU 104 n 75 LEU 104 A ALA 105 n 76 ALA 105 A GLY 106 n 77 GLY 106 A ARG 107 n 78 ARG 107 A TRP 108 n 79 TRP 108 A PRO 109 n 80 PRO 109 A VAL 110 n 81 VAL 110 A LYS 111 n 82 LYS 111 A THR 112 n 83 THR 112 A VAL 113 n 84 VAL 113 A HIS 114 n 85 HIS 114 A THR 115 n 86 THR 115 A ASP 116 n 87 ASP 116 A ASN 117 n 88 ASN 117 A GLY 118 n 89 GLY 118 A SER 119 n 90 SER 119 A ASN 120 n 91 ASN 120 A PHE 121 n 92 PHE 121 A THR 122 n 93 THR 122 A SER 123 n 94 SER 123 A THR 124 n 95 THR 124 A THR 125 n 96 THR 125 A VAL 126 n 97 VAL 126 A LYS 127 n 98 LYS 127 A ALA 128 n 99 ALA 128 A ALA 129 n 100 ALA 129 A CYS 130 n 101 CYS 130 A TRP 131 n 102 TRP 131 A TRP 132 n 103 TRP 132 A ALA 133 n 104 ALA 133 A GLY 134 n 105 GLY 134 A ILE 135 n 106 ILE 135 A LYS 136 n 107 LYS 136 A GLN 137 n 108 GLN 137 A GLU 138 n 109 GLU 138 A ASP 139 n 110 ASP 139 A GLY 140 n 111 GLY 140 A ILE 141 n 112 ILE 141 A PRO 142 n 113 PRO 142 A TYR 143 n 114 TYR 143 A ASN 144 n 115 ASN 144 A PRO 145 n 116 PRO 145 A GLN 146 n 117 GLN 146 A SER 147 n 118 SER 147 A GLN 148 n 119 GLN 148 A GLY 149 n 120 GLY 149 A VAL 150 n 121 VAL 150 A ILE 151 n 122 ILE 151 A GLU 152 n 123 GLU 152 A SER 153 n 124 SER 153 A MET 154 n 125 MET 154 A ASN 155 n 126 ASN 155 A LYS 156 n 127 LYS 156 A GLU 157 n 128 GLU 157 A LEU 158 n 129 LEU 158 A LYS 159 n 130 LYS 159 A LYS 160 n 131 LYS 160 A ILE 161 n 132 ILE 161 A ILE 162 n 133 ILE 162 A GLY 163 n 134 GLY 163 A GLN 164 n 135 GLN 164 A VAL 165 n 136 VAL 165 A ARG 166 n 137 ARG 166 A ASP 167 n 138 ASP 167 A GLN 168 n 139 GLN 168 A ALA 169 n 140 ALA 169 A GLU 170 n 141 GLU 170 A HIS 171 n 142 HIS 171 A LEU 172 n 143 LEU 172 A LYS 173 n 144 LYS 173 A THR 174 n 145 THR 174 A ALA 175 n 146 ALA 175 A VAL 176 n 147 VAL 176 A GLN 177 n 148 GLN 177 A MET 178 n 149 MET 178 A ALA 179 n 150 ALA 179 A VAL 180 n 151 VAL 180 A PHE 181 n 152 PHE 181 A ILE 182 n 153 ILE 182 A HIS 183 n 154 HIS 183 A ASN 184 n 155 ASN 184 A HIS 185 n 156 HIS 185 A LYS 186 n 157 LYS 186 A ARG 187 n 158 ARG 187 A LYS 188 n 159 LYS 188 A n 160 189 A n 161 190 A n 162 191 A n 163 192 A GLY 193 n 164 GLY 193 A TYR 194 n 165 TYR 194 A SER 195 n 166 SER 195 A ALA 196 n 167 ALA 196 A GLY 197 n 168 GLY 197 A GLU 198 n 169 GLU 198 A ARG 199 n 170 ARG 199 A ILE 200 n 171 ILE 200 A VAL 201 n 172 VAL 201 A ASP 202 n 173 ASP 202 A ILE 203 n 174 ILE 203 A ILE 204 n 175 ILE 204 A ALA 205 n 176 ALA 205 A THR 206 n 177 THR 206 A ASP 207 n 178 ASP 207 A ILE 208 n 179 ILE 208 A GLN 209 n 180 GLN 209 A n 181 210 A n 182 211 A n 183 212 A n 1 30 B n 2 31 B n 3 32 B n 4 33 B n 5 34 B n 6 35 B n 7 36 B n 8 37 B n 9 38 B n 10 39 B n 11 40 B n 12 41 B n 13 42 B n 14 43 B n 15 44 B n 16 45 B n 17 46 B n 18 47 B n 19 48 B n 20 49 B n 21 50 B n 22 51 B n 23 52 B n 24 53 B n 25 54 B n 26 55 B n 27 56 B SER 57 n 28 SER 57 B PRO 58 n 29 PRO 58 B GLY 59 n 30 GLY 59 B ILE 60 n 31 ILE 60 B TRP 61 n 32 TRP 61 B GLN 62 n 33 GLN 62 B LEU 63 n 34 LEU 63 B ASP 64 n 35 ASP 64 B CYS 65 n 36 CYS 65 B THR 66 n 37 THR 66 B HIS 67 n 38 HIS 67 B LEU 68 n 39 LEU 68 B GLU 69 n 40 GLU 69 B GLY 70 n 41 GLY 70 B LYS 71 n 42 LYS 71 B VAL 72 n 43 VAL 72 B ILE 73 n 44 ILE 73 B LEU 74 n 45 LEU 74 B VAL 75 n 46 VAL 75 B ALA 76 n 47 ALA 76 B VAL 77 n 48 VAL 77 B HIS 78 n 49 HIS 78 B VAL 79 n 50 VAL 79 B ALA 80 n 51 ALA 80 B SER 81 n 52 SER 81 B GLY 82 n 53 GLY 82 B TYR 83 n 54 TYR 83 B ILE 84 n 55 ILE 84 B GLU 85 n 56 GLU 85 B ALA 86 n 57 ALA 86 B GLU 87 n 58 GLU 87 B VAL 88 n 59 VAL 88 B ILE 89 n 60 ILE 89 B PRO 90 n 61 PRO 90 B ALA 91 n 62 ALA 91 B GLU 92 n 63 GLU 92 B THR 93 n 64 THR 93 B GLY 94 n 65 GLY 94 B GLN 95 n 66 GLN 95 B GLU 96 n 67 GLU 96 B THR 97 n 68 THR 97 B ALA 98 n 69 ALA 98 B TYR 99 n 70 TYR 99 B PHE 100 n 71 PHE 100 B LEU 101 n 72 LEU 101 B LEU 102 n 73 LEU 102 B LYS 103 n 74 LYS 103 B LEU 104 n 75 LEU 104 B ALA 105 n 76 ALA 105 B GLY 106 n 77 GLY 106 B ARG 107 n 78 ARG 107 B TRP 108 n 79 TRP 108 B PRO 109 n 80 PRO 109 B VAL 110 n 81 VAL 110 B LYS 111 n 82 LYS 111 B THR 112 n 83 THR 112 B VAL 113 n 84 VAL 113 B HIS 114 n 85 HIS 114 B THR 115 n 86 THR 115 B ASP 116 n 87 ASP 116 B ASN 117 n 88 ASN 117 B GLY 118 n 89 GLY 118 B SER 119 n 90 SER 119 B ASN 120 n 91 ASN 120 B PHE 121 n 92 PHE 121 B THR 122 n 93 THR 122 B SER 123 n 94 SER 123 B THR 124 n 95 THR 124 B THR 125 n 96 THR 125 B VAL 126 n 97 VAL 126 B LYS 127 n 98 LYS 127 B ALA 128 n 99 ALA 128 B ALA 129 n 100 ALA 129 B CYS 130 n 101 CYS 130 B TRP 131 n 102 TRP 131 B TRP 132 n 103 TRP 132 B ALA 133 n 104 ALA 133 B GLY 134 n 105 GLY 134 B ILE 135 n 106 ILE 135 B LYS 136 n 107 LYS 136 B GLN 137 n 108 GLN 137 B GLU 138 n 109 GLU 138 B ASP 139 n 110 ASP 139 B GLY 140 n 111 GLY 140 B ILE 141 n 112 ILE 141 B PRO 142 n 113 PRO 142 B TYR 143 n 114 TYR 143 B ASN 144 n 115 ASN 144 B PRO 145 n 116 PRO 145 B GLN 146 n 117 GLN 146 B SER 147 n 118 SER 147 B GLN 148 n 119 GLN 148 B GLY 149 n 120 GLY 149 B VAL 150 n 121 VAL 150 B ILE 151 n 122 ILE 151 B GLU 152 n 123 GLU 152 B SER 153 n 124 SER 153 B MET 154 n 125 MET 154 B ASN 155 n 126 ASN 155 B LYS 156 n 127 LYS 156 B GLU 157 n 128 GLU 157 B LEU 158 n 129 LEU 158 B LYS 159 n 130 LYS 159 B LYS 160 n 131 LYS 160 B ILE 161 n 132 ILE 161 B ILE 162 n 133 ILE 162 B GLY 163 n 134 GLY 163 B GLN 164 n 135 GLN 164 B VAL 165 n 136 VAL 165 B ARG 166 n 137 ARG 166 B ASP 167 n 138 ASP 167 B GLN 168 n 139 GLN 168 B ALA 169 n 140 ALA 169 B GLU 170 n 141 GLU 170 B HIS 171 n 142 HIS 171 B LEU 172 n 143 LEU 172 B LYS 173 n 144 LYS 173 B THR 174 n 145 THR 174 B ALA 175 n 146 ALA 175 B VAL 176 n 147 VAL 176 B GLN 177 n 148 GLN 177 B MET 178 n 149 MET 178 B ALA 179 n 150 ALA 179 B VAL 180 n 151 VAL 180 B PHE 181 n 152 PHE 181 B ILE 182 n 153 ILE 182 B HIS 183 n 154 HIS 183 B ASN 184 n 155 ASN 184 B HIS 185 n 156 HIS 185 B LYS 186 n 157 LYS 186 B ARG 187 n 158 ARG 187 B LYS 188 n 159 LYS 188 B n 160 189 B n 161 190 B n 162 191 B n 163 192 B GLY 193 n 164 GLY 193 B TYR 194 n 165 TYR 194 B SER 195 n 166 SER 195 B ALA 196 n 167 ALA 196 B GLY 197 n 168 GLY 197 B GLU 198 n 169 GLU 198 B ARG 199 n 170 ARG 199 B ILE 200 n 171 ILE 200 B VAL 201 n 172 VAL 201 B ASP 202 n 173 ASP 202 B ILE 203 n 174 ILE 203 B ILE 204 n 175 ILE 204 B ALA 205 n 176 ALA 205 B THR 206 n 177 THR 206 B ASP 207 n 178 ASP 207 B ILE 208 n 179 ILE 208 B GLN 209 n 180 GLN 209 B n 181 210 B n 182 211 B n 183 212 B SER 1 n 1 SER 1 D ARG 2 n 2 ARG 2 D LYS 3 n 3 LYS 3 D ILE 4 n 4 ILE 4 D ASP 5 n 5 ASP 5 D ASN 6 n 6 ASN 6 D LEU 7 n 7 LEU 7 D ASP 8 n 8 ASP 8 D SER 1 n 1 SER 1 F ARG 2 n 2 ARG 2 F LYS 3 n 3 LYS 3 F ILE 4 n 4 ILE 4 F ASP 5 n 5 ASP 5 F ASN 6 n 6 ASN 6 F LEU 7 n 7 LEU 7 F ASP 8 n 8 ASP 8 F author_and_software_defined_assembly PISA 4 tetrameric 4410 -24 14720 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 85 A O GLU 56 A N ALA 76 A N ALA 47 A O ILE 73 A O ILE 44 A N THR 66 A N THR 37 A N LEU 63 A N LEU 34 A O HIS 114 A O HIS 85 A N VAL 113 A N VAL 84 A O GLU 138 A O GLU 109 B O GLU 85 B O GLU 56 B N ALA 76 B N ALA 47 B O ILE 73 B O ILE 44 B N THR 66 B N THR 37 B N TRP 61 B N TRP 32 B O HIS 114 B O HIS 85 B N VAL 113 B N VAL 84 B O GLU 138 B O GLU 109 1 A MET 30 A MET 1 1 Y 1 A GLY 31 A GLY 2 1 Y 1 A SER 32 A SER 3 1 Y 1 A SER 33 A SER 4 1 Y 1 A HIS 34 A HIS 5 1 Y 1 A HIS 35 A HIS 6 1 Y 1 A HIS 36 A HIS 7 1 Y 1 A HIS 37 A HIS 8 1 Y 1 A HIS 38 A HIS 9 1 Y 1 A HIS 39 A HIS 10 1 Y 1 A SER 40 A SER 11 1 Y 1 A SER 41 A SER 12 1 Y 1 A GLY 42 A GLY 13 1 Y 1 A LEU 43 A LEU 14 1 Y 1 A VAL 44 A VAL 15 1 Y 1 A PRO 45 A PRO 16 1 Y 1 A ARG 46 A ARG 17 1 Y 1 A GLY 47 A GLY 18 1 Y 1 A SER 48 A SER 19 1 Y 1 A HIS 49 A HIS 20 1 Y 1 A MET 50 A MET 21 1 Y 1 A HIS 51 A HIS 22 1 Y 1 A GLY 52 A GLY 23 1 Y 1 A GLN 53 A GLN 24 1 Y 1 A VAL 54 A VAL 25 1 Y 1 A ASP 55 A ASP 26 1 Y 1 A SER 56 A SER 27 1 Y 1 A GLY 189 A GLY 160 1 Y 1 A GLY 190 A GLY 161 1 Y 1 A ILE 191 A ILE 162 1 Y 1 A GLY 192 A GLY 163 1 Y 1 A THR 210 A THR 181 1 Y 1 A LYS 211 A LYS 182 1 Y 1 A GLU 212 A GLU 183 1 Y 1 B MET 30 B MET 1 1 Y 1 B GLY 31 B GLY 2 1 Y 1 B SER 32 B SER 3 1 Y 1 B SER 33 B SER 4 1 Y 1 B HIS 34 B HIS 5 1 Y 1 B HIS 35 B HIS 6 1 Y 1 B HIS 36 B HIS 7 1 Y 1 B HIS 37 B HIS 8 1 Y 1 B HIS 38 B HIS 9 1 Y 1 B HIS 39 B HIS 10 1 Y 1 B SER 40 B SER 11 1 Y 1 B SER 41 B SER 12 1 Y 1 B GLY 42 B GLY 13 1 Y 1 B LEU 43 B LEU 14 1 Y 1 B VAL 44 B VAL 15 1 Y 1 B PRO 45 B PRO 16 1 Y 1 B ARG 46 B ARG 17 1 Y 1 B GLY 47 B GLY 18 1 Y 1 B SER 48 B SER 19 1 Y 1 B HIS 49 B HIS 20 1 Y 1 B MET 50 B MET 21 1 Y 1 B HIS 51 B HIS 22 1 Y 1 B GLY 52 B GLY 23 1 Y 1 B GLN 53 B GLN 24 1 Y 1 B VAL 54 B VAL 25 1 Y 1 B ASP 55 B ASP 26 1 Y 1 B SER 56 B SER 27 1 Y 1 B GLY 189 B GLY 160 1 Y 1 B GLY 190 B GLY 161 1 Y 1 B ILE 191 B ILE 162 1 Y 1 B GLY 192 B GLY 163 1 Y 1 B THR 210 B THR 181 1 Y 1 B LYS 211 B LYS 182 1 Y 1 B GLU 212 B GLU 183 1 Y 1 A A OE1 O GLU ACY 87 215 1.83 B 1 B A OE1 O GLU ACY 87 3 1.84 B 1 B B O1 O SO4 HOH 5 266 1.97 1 B B OH O TYR HOH 143 263 2.08 1 A A OH O TYR HOH 143 260 2.11 1 5.61 0.90 118.30 123.91 A A A CB CG OD1 ASP ASP ASP 116 116 116 N 1 6.51 0.90 118.30 124.81 B B B CB CG OD1 ASP ASP ASP 116 116 116 N 1 -6.41 0.90 118.30 111.89 B B B CB CG OD2 ASP ASP ASP 116 116 116 N 1 A A CE3 CZ3 TRP TRP 132 132 0.106 0.017 1.380 1.486 N 1 B B CB OG SER SER 119 119 0.081 0.013 1.418 1.499 N 1 B B CE3 CZ3 TRP TRP 132 132 0.103 0.017 1.380 1.483 N 1 D ASN 6 -152.83 84.86 1 F ASN 6 -152.67 86.83 103.910 28.2462 7.910 0.3800 0.1900 0.0000 0.3800 0.0000 -0.5700 0.9660 0.9510 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: REFINED INDIVIDUALLY 0.1966 0.1584 0.1603 1.8800 61.2900 1547 30664 5.0000 99.9800 1.000 0.200 2.4540 0.0740 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1170 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 1.8800 61.2900 147 2655 58 0 2450 0.028 0.022 2719 2.184 1.956 3723 5.922 5.000 359 30.538 25.385 117 15.308 15.000 490 11.143 15.000 10 0.192 0.200 421 0.011 0.021 2032 0.2890 0.2470 1.9290 126 2141 2267 20 100.0000 1.88 67.3 3AVM 30687 30687 1 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0062 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 Integrase, LEDGF peptide Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N 5 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N 6 N N A THR 93 A THR 64 HELX_P A TRP 108 A TRP 79 1 1 16 A ASN 117 A ASN 88 HELX_P A SER 123 A SER 94 1 2 7 A SER 123 A SER 94 HELX_P A ALA 133 A ALA 104 1 3 11 A PRO 145 A PRO 116 HELX_P A ARG 166 A ARG 137 1 4 22 A ASP 167 A ASP 138 HELX_P A ALA 169 A ALA 140 5 5 3 A HIS 171 A HIS 142 HELX_P A LYS 186 A LYS 157 1 6 16 A SER 195 A SER 166 HELX_P A GLN 209 A GLN 180 1 7 15 B THR 93 B THR 64 HELX_P B TRP 108 B TRP 79 1 8 16 B ASN 117 B ASN 88 HELX_P B SER 123 B SER 94 1 9 7 B SER 123 B SER 94 HELX_P B ALA 133 B ALA 104 1 10 11 B PRO 145 B PRO 116 HELX_P B ARG 166 B ARG 137 1 11 22 B ASP 167 B ASP 138 HELX_P B ALA 169 B ALA 140 5 12 3 B HIS 171 B HIS 142 HELX_P B LYS 186 B LYS 157 1 13 16 B SER 195 B SER 166 HELX_P B GLN 209 B GLN 180 1 14 15 covale 1.331 D ASP 8 C C ASP 8 1_555 D SER 1 C N SER 1 1_555 covale 1.330 F ASP 8 D C ASP 8 1_555 F SER 1 D N SER 1 1_555 RECOMBINATION/INHIBITOR protein-protein interactions, HIV, RECOMBINATION-INHIBITOR complex POL_HV1N5 UNP 1 1197 P12497 MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA CWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQ TKE 3AVM PDB 2 3AVM 1197 1359 3AVM 50 212 P12497 A 1 21 183 1197 1359 3AVM 50 212 P12497 B 1 21 183 1 8 3AVM 1 8 3AVM D 2 1 8 1 8 3AVM 1 8 3AVM F 2 1 8 1 EXPRESSION TAG MET 30 3AVM A P12497 UNP 1 1 EXPRESSION TAG GLY 31 3AVM A P12497 UNP 2 1 EXPRESSION TAG SER 32 3AVM A P12497 UNP 3 1 EXPRESSION TAG SER 33 3AVM A P12497 UNP 4 1 EXPRESSION TAG HIS 34 3AVM A P12497 UNP 5 1 EXPRESSION TAG HIS 35 3AVM A P12497 UNP 6 1 EXPRESSION TAG HIS 36 3AVM A P12497 UNP 7 1 EXPRESSION TAG HIS 37 3AVM A P12497 UNP 8 1 EXPRESSION TAG HIS 38 3AVM A P12497 UNP 9 1 EXPRESSION TAG HIS 39 3AVM A P12497 UNP 10 1 EXPRESSION TAG SER 40 3AVM A P12497 UNP 11 1 EXPRESSION TAG SER 41 3AVM A P12497 UNP 12 1 EXPRESSION TAG GLY 42 3AVM A P12497 UNP 13 1 EXPRESSION TAG LEU 43 3AVM A P12497 UNP 14 1 EXPRESSION TAG VAL 44 3AVM A P12497 UNP 15 1 EXPRESSION TAG PRO 45 3AVM A P12497 UNP 16 1 EXPRESSION TAG ARG 46 3AVM A P12497 UNP 17 1 EXPRESSION TAG GLY 47 3AVM A P12497 UNP 18 1 EXPRESSION TAG SER 48 3AVM A P12497 UNP 19 1 EXPRESSION TAG HIS 49 3AVM A P12497 UNP 20 1 CYS ENGINEERED MUTATION SER 56 3AVM A P12497 UNP 1203 27 1 PHE ENGINEERED MUTATION ASP 139 3AVM A P12497 UNP 1286 110 1 PHE ENGINEERED MUTATION HIS 185 3AVM A P12497 UNP 1332 156 2 EXPRESSION TAG MET 30 3AVM B P12497 UNP 1 2 EXPRESSION TAG GLY 31 3AVM B P12497 UNP 2 2 EXPRESSION TAG SER 32 3AVM B P12497 UNP 3 2 EXPRESSION TAG SER 33 3AVM B P12497 UNP 4 2 EXPRESSION TAG HIS 34 3AVM B P12497 UNP 5 2 EXPRESSION TAG HIS 35 3AVM B P12497 UNP 6 2 EXPRESSION TAG HIS 36 3AVM B P12497 UNP 7 2 EXPRESSION TAG HIS 37 3AVM B P12497 UNP 8 2 EXPRESSION TAG HIS 38 3AVM B P12497 UNP 9 2 EXPRESSION TAG HIS 39 3AVM B P12497 UNP 10 2 EXPRESSION TAG SER 40 3AVM B P12497 UNP 11 2 EXPRESSION TAG SER 41 3AVM B P12497 UNP 12 2 EXPRESSION TAG GLY 42 3AVM B P12497 UNP 13 2 EXPRESSION TAG LEU 43 3AVM B P12497 UNP 14 2 EXPRESSION TAG VAL 44 3AVM B P12497 UNP 15 2 EXPRESSION TAG PRO 45 3AVM B P12497 UNP 16 2 EXPRESSION TAG ARG 46 3AVM B P12497 UNP 17 2 EXPRESSION TAG GLY 47 3AVM B P12497 UNP 18 2 EXPRESSION TAG SER 48 3AVM B P12497 UNP 19 2 EXPRESSION TAG HIS 49 3AVM B P12497 UNP 20 2 CYS ENGINEERED MUTATION SER 56 3AVM B P12497 UNP 1203 27 2 PHE ENGINEERED MUTATION ASP 139 3AVM B P12497 UNP 1286 110 2 PHE ENGINEERED MUTATION HIS 185 3AVM B P12497 UNP 1332 156 5 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel parallel A ILE 84 A ILE 55 A ILE 89 A ILE 60 A LYS 71 A LYS 42 A HIS 78 A HIS 49 A ILE 60 A ILE 31 A LEU 68 A LEU 39 A THR 112 A THR 83 A HIS 114 A HIS 85 A LYS 136 A LYS 107 A GLU 138 A GLU 109 B ILE 84 B ILE 55 B ILE 89 B ILE 60 B LYS 71 B LYS 42 B HIS 78 B HIS 49 B ILE 60 B ILE 31 B LEU 68 B LEU 39 B THR 112 B THR 83 B HIS 114 B HIS 85 B LYS 136 B LYS 107 B GLU 138 B GLU 109 BINDING SITE FOR RESIDUE SO4 A 2 Software 6 BINDING SITE FOR RESIDUE SO4 A 4 Software 5 BINDING SITE FOR RESIDUE SO4 A 6 Software 6 BINDING SITE FOR RESIDUE SO4 A 7 Software 6 BINDING SITE FOR RESIDUE CL A 213 Software 1 BINDING SITE FOR RESIDUE ACY A 214 Software 8 BINDING SITE FOR RESIDUE ACY A 3 Software 7 BINDING SITE FOR RESIDUE ACY A 215 Software 7 BINDING SITE FOR RESIDUE SO4 B 1 Software 5 BINDING SITE FOR RESIDUE SO4 B 3 Software 6 BINDING SITE FOR RESIDUE SO4 B 5 Software 7 BINDING SITE FOR RESIDUE SO4 B 8 Software 6 BINDING SITE FOR RESIDUE CL B 213 Software 2 BINDING SITE FOR RESIDUE ACY B 214 Software 7 BINDING SITE FOR CHAIN D OF LEDGF PEPTIDE Software 13 BINDING SITE FOR CHAIN F OF LEDGF PEPTIDE Software 12 A HOH 28 S HOH 6 1_555 A THR 66 A THR 37 6 1_555 A HIS 67 A HIS 38 6 1_555 A LYS 111 A LYS 82 6 3_544 A LYS 136 A LYS 107 6 3_544 A LYS 159 A LYS 130 6 1_555 A LYS 71 A LYS 42 5 1_555 A HIS 171 A HIS 142 5 1_555 A LEU 172 A LEU 143 5 1_555 A HOH 221 S HOH 5 1_555 A HOH 248 S HOH 5 1_555 A GLY 94 A GLY 65 6 1_555 A SER 123 A SER 94 6 1_555 A THR 124 A THR 95 6 1_555 A THR 125 A THR 96 6 1_555 A HOH 251 S HOH 6 1_555 A HOH 253 S HOH 6 1_555 A GLU 85 A GLU 56 6 1_555 A GLU 87 A GLU 58 6 1_555 A PHE 100 A PHE 71 6 1_555 A LYS 103 A LYS 74 6 1_555 B SO4 8 P SO4 6 1_555 B ARG 107 B ARG 78 6 1_555 A GLU 92 A GLU 63 1 1_555 A HOH 8 S HOH 8 1_555 A ASN 184 A ASN 155 8 1_555 A HIS 185 A HIS 156 8 1_555 B ALA 105 B ALA 76 8 1_555 B GLY 106 B GLY 77 8 1_555 B ARG 107 B ARG 78 8 1_555 B TRP 108 B TRP 79 8 1_555 B PRO 109 B PRO 80 8 1_555 A TYR 99 A TYR 70 7 1_555 A LYS 103 A LYS 74 7 1_555 A ACY 215 L ACY 7 1_555 A HOH 228 S HOH 7 1_555 B HOH 25 T HOH 7 1_555 B GLU 87 B GLU 58 7 1_555 B HOH 269 T HOH 7 1_555 A ACY 3 K ACY 7 1_555 A HOH 20 S HOH 7 1_555 A GLU 87 A GLU 58 7 1_555 A HOH 226 S HOH 7 1_555 A HOH 249 S HOH 7 1_555 B TYR 99 B TYR 70 7 1_555 B LYS 103 B LYS 74 7 1_555 B THR 66 B THR 37 5 1_555 B HIS 67 B HIS 38 5 1_555 B LYS 111 B LYS 82 5 2_545 B LYS 136 B LYS 107 5 2_545 B LYS 159 B LYS 130 5 1_555 B LYS 71 B LYS 42 6 1_555 B ARG 166 B ARG 137 6 1_555 B HIS 171 B HIS 142 6 1_555 B LEU 172 B LEU 143 6 1_555 B HOH 221 T HOH 6 1_555 B HOH 271 T HOH 6 1_555 B GLY 94 B GLY 65 7 1_555 B SER 123 B SER 94 7 1_555 B THR 124 B THR 95 7 1_555 B THR 125 B THR 96 7 1_555 B HOH 241 T HOH 7 1_555 B HOH 249 T HOH 7 1_555 B HOH 266 T HOH 7 1_555 A SO4 7 H SO4 6 1_555 A ARG 107 A ARG 78 6 1_555 B GLU 85 B GLU 56 6 1_555 B GLU 87 B GLU 58 6 1_555 B PHE 100 B PHE 71 6 1_555 B LYS 103 B LYS 74 6 1_555 B VAL 72 B VAL 43 2 1_555 B GLU 92 B GLU 63 2 1_555 A ARG 107 A ARG 78 7 1_555 A TRP 108 A TRP 79 7 1_555 A PRO 109 A PRO 80 7 1_555 B TRP 108 B TRP 79 7 1_555 B GLY 197 B GLY 168 7 1_555 B VAL 201 B VAL 172 7 1_555 B HOH 256 T HOH 7 1_555 A GLN 95 A GLN 66 13 1_555 A THR 124 A THR 95 13 1_555 A ASP 139 A ASP 110 13 2_445 A HOH 270 S HOH 13 1_555 B ASP 167 B ASP 138 13 1_555 B GLN 168 B GLN 139 13 1_555 B ALA 169 B ALA 140 13 1_555 B GLU 170 B GLU 141 13 1_555 B HIS 171 B HIS 142 13 1_555 B THR 174 B THR 145 13 1_555 B HOH 243 T HOH 13 1_555 B HOH 275 T HOH 13 1_555 D HOH 141 U HOH 13 1_555 A ASP 167 A ASP 138 12 1_555 A GLN 168 A GLN 139 12 1_555 A ALA 169 A ALA 140 12 1_555 A GLU 170 A GLU 141 12 1_555 A HIS 171 A HIS 142 12 1_555 A THR 174 A THR 145 12 1_555 A HOH 225 S HOH 12 1_555 A HOH 242 S HOH 12 1_555 B GLN 95 B GLN 66 12 1_555 B THR 124 B THR 95 12 1_555 B HOH 267 T HOH 12 1_555 F HOH 144 V HOH 12 1_555 144 P 31