0.022477 0.000000 0.000000 0.000000 0.019385 0.000000 0.000000 0.000000 0.007575 0.00000 0.00000 0.00000 Kakuda, S. Takimoto-Kamimura, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 44.489 51.585 132.017 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C28 H46 O4 446.662 (1R,3S,5Z)-5-[(2E)-2-[(1R,3S,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-3-methoxy-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N C N 90 N C N 91 N C N 92 S C N 93 R C N 94 S C N 95 N C N 96 R C N 97 N C N 98 N C N 99 N C N 100 N C N 101 R C N 102 N C N 103 S C N 104 N C N 105 N C N 106 R C N 107 N C N 108 N O N 109 N O N 110 N C N 111 N C N 112 N C N 113 N C N 114 N C N 115 N C N 116 N C N 117 N O N 118 N O N 119 N C N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N O N 174 N N N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N C N 192 N C N 193 N O N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 N C N 207 N C N 208 N O N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C Y 220 N C Y 221 N N Y 222 N C Y 223 N C Y 224 N N N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N O N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 S C N 244 N C N 245 N C N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N C N 291 N N N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N S N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 R C N 387 N O N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N N Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 E sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 Z sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing Y 220 N sing Y 221 N doub Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing Y 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub N 333 N sing Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub Y 402 N sing Y 403 N sing N 404 N sing Y 405 N sing Y 406 N doub N 407 N sing Y 408 N doub N 409 N sing Y 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing Y 425 N doub Y 426 N sing Y 427 N sing N 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing US Org.Lett. 1523-7060 13 2852 2855 10.1021/ol200828s 21539305 New C15-substituted active vitamin D3 2011 10.2210/pdb3ax8/pdb pdb_00003ax8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 CCD 2008-01-25 SINGLE WAVELENGTH M x-ray 1 1.000 1.0 BL-17A Photon Factory 1.000 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 29805.342 Vitamin D3 receptor ligand binding domain, residues 118-427 DEL(165-215) mutant 1 man polymer 446.662 (1R,3S,5Z)-5-[(2E)-2-[(1R,3S,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-3-methoxy-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 1 syn non-polymer 18.015 water 9 nat water VDR, 1,25-dihydroxyvitamin D3 receptor, Nuclear receptor subfamily 1 group I member 1 no no GSHMDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGF AKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLN LHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCL SFQPECSMKLTPLVLEVFGNEIS GSHMDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGF AKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLN LHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCL SFQPECSMKLTPLVLEVFGNEIS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 5 51 VDR, NR1I1 9606 Homo sapiens 562 Escherichia coli human sample 52 263 VDR, NR1I1 9606 Homo sapiens 562 Escherichia coli 1 2.54 51.60 VAPOR DIFFUSION, HANGING DROP 6.5 0.1M MES, 1.2-1.6M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 entity_src_gen software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Refinement description Source and taxonomy Data collection Database references Derived calculations Refinement description 1 0 2011-10-05 1 1 2017-08-16 1 2 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2011-03-30 REL REL EIM (1R,3S,5Z)-5-[(2E)-2-[(1R,3S,3aS,7aR)-1-[(2R)-6-hydroxy-6-methyl-heptan-2-yl]-3-methoxy-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol HOH water THIS ENTRY IS DELETION MUTANT. REISDUES 165-215 WERE DELETED. 1DB1 PDB experimental model MOL 1 2 EIM EIM 1 A HOH 2 3 HOH HOH 2 A HOH 3 3 HOH HOH 3 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 6 3 HOH HOH 6 A HOH 7 3 HOH HOH 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 1 3 HOH HOH 428 A n 1 114 A n 2 115 A n 3 116 A n 4 117 A ASP 118 n 5 ASP 118 A SER 119 n 6 SER 119 A LEU 120 n 7 LEU 120 A ARG 121 n 8 ARG 121 A PRO 122 n 9 PRO 122 A LYS 123 n 10 LYS 123 A LEU 124 n 11 LEU 124 A SER 125 n 12 SER 125 A GLU 126 n 13 GLU 126 A GLU 127 n 14 GLU 127 A GLN 128 n 15 GLN 128 A GLN 129 n 16 GLN 129 A ARG 130 n 17 ARG 130 A ILE 131 n 18 ILE 131 A ILE 132 n 19 ILE 132 A ALA 133 n 20 ALA 133 A ILE 134 n 21 ILE 134 A LEU 135 n 22 LEU 135 A LEU 136 n 23 LEU 136 A ASP 137 n 24 ASP 137 A ALA 138 n 25 ALA 138 A HIS 139 n 26 HIS 139 A HIS 140 n 27 HIS 140 A LYS 141 n 28 LYS 141 A THR 142 n 29 THR 142 A TYR 143 n 30 TYR 143 A ASP 144 n 31 ASP 144 A PRO 145 n 32 PRO 145 A THR 146 n 33 THR 146 A TYR 147 n 34 TYR 147 A SER 148 n 35 SER 148 A ASP 149 n 36 ASP 149 A PHE 150 n 37 PHE 150 A CYS 151 n 38 CYS 151 A GLN 152 n 39 GLN 152 A PHE 153 n 40 PHE 153 A ARG 154 n 41 ARG 154 A PRO 155 n 42 PRO 155 A PRO 156 n 43 PRO 156 A VAL 157 n 44 VAL 157 A ARG 158 n 45 ARG 158 A VAL 159 n 46 VAL 159 A ASN 160 n 47 ASN 160 A ASP 161 n 48 ASP 161 A GLY 162 n 49 GLY 162 A n 50 163 A n 51 164 A SER 216 n 52 SER 216 A VAL 217 n 53 VAL 217 A THR 218 n 54 THR 218 A LEU 219 n 55 LEU 219 A GLU 220 n 56 GLU 220 A LEU 221 n 57 LEU 221 A SER 222 n 58 SER 222 A GLN 223 n 59 GLN 223 A LEU 224 n 60 LEU 224 A SER 225 n 61 SER 225 A MET 226 n 62 MET 226 A LEU 227 n 63 LEU 227 A PRO 228 n 64 PRO 228 A HIS 229 n 65 HIS 229 A LEU 230 n 66 LEU 230 A ALA 231 n 67 ALA 231 A ASP 232 n 68 ASP 232 A LEU 233 n 69 LEU 233 A VAL 234 n 70 VAL 234 A SER 235 n 71 SER 235 A TYR 236 n 72 TYR 236 A SER 237 n 73 SER 237 A ILE 238 n 74 ILE 238 A GLN 239 n 75 GLN 239 A LYS 240 n 76 LYS 240 A VAL 241 n 77 VAL 241 A ILE 242 n 78 ILE 242 A GLY 243 n 79 GLY 243 A PHE 244 n 80 PHE 244 A ALA 245 n 81 ALA 245 A LYS 246 n 82 LYS 246 A MET 247 n 83 MET 247 A ILE 248 n 84 ILE 248 A PRO 249 n 85 PRO 249 A GLY 250 n 86 GLY 250 A PHE 251 n 87 PHE 251 A ARG 252 n 88 ARG 252 A ASP 253 n 89 ASP 253 A LEU 254 n 90 LEU 254 A THR 255 n 91 THR 255 A SER 256 n 92 SER 256 A GLU 257 n 93 GLU 257 A ASP 258 n 94 ASP 258 A GLN 259 n 95 GLN 259 A ILE 260 n 96 ILE 260 A VAL 261 n 97 VAL 261 A LEU 262 n 98 LEU 262 A LEU 263 n 99 LEU 263 A LYS 264 n 100 LYS 264 A SER 265 n 101 SER 265 A SER 266 n 102 SER 266 A ALA 267 n 103 ALA 267 A ILE 268 n 104 ILE 268 A GLU 269 n 105 GLU 269 A VAL 270 n 106 VAL 270 A ILE 271 n 107 ILE 271 A MET 272 n 108 MET 272 A LEU 273 n 109 LEU 273 A ARG 274 n 110 ARG 274 A SER 275 n 111 SER 275 A ASN 276 n 112 ASN 276 A GLU 277 n 113 GLU 277 A SER 278 n 114 SER 278 A PHE 279 n 115 PHE 279 A THR 280 n 116 THR 280 A MET 281 n 117 MET 281 A ASP 282 n 118 ASP 282 A ASP 283 n 119 ASP 283 A MET 284 n 120 MET 284 A SER 285 n 121 SER 285 A TRP 286 n 122 TRP 286 A THR 287 n 123 THR 287 A CYS 288 n 124 CYS 288 A GLY 289 n 125 GLY 289 A ASN 290 n 126 ASN 290 A GLN 291 n 127 GLN 291 A ASP 292 n 128 ASP 292 A TYR 293 n 129 TYR 293 A LYS 294 n 130 LYS 294 A TYR 295 n 131 TYR 295 A ARG 296 n 132 ARG 296 A VAL 297 n 133 VAL 297 A SER 298 n 134 SER 298 A ASP 299 n 135 ASP 299 A VAL 300 n 136 VAL 300 A THR 301 n 137 THR 301 A LYS 302 n 138 LYS 302 A ALA 303 n 139 ALA 303 A GLY 304 n 140 GLY 304 A HIS 305 n 141 HIS 305 A SER 306 n 142 SER 306 A LEU 307 n 143 LEU 307 A GLU 308 n 144 GLU 308 A LEU 309 n 145 LEU 309 A ILE 310 n 146 ILE 310 A GLU 311 n 147 GLU 311 A PRO 312 n 148 PRO 312 A LEU 313 n 149 LEU 313 A ILE 314 n 150 ILE 314 A LYS 315 n 151 LYS 315 A PHE 316 n 152 PHE 316 A GLN 317 n 153 GLN 317 A VAL 318 n 154 VAL 318 A GLY 319 n 155 GLY 319 A LEU 320 n 156 LEU 320 A LYS 321 n 157 LYS 321 A LYS 322 n 158 LYS 322 A LEU 323 n 159 LEU 323 A ASN 324 n 160 ASN 324 A LEU 325 n 161 LEU 325 A HIS 326 n 162 HIS 326 A GLU 327 n 163 GLU 327 A GLU 328 n 164 GLU 328 A GLU 329 n 165 GLU 329 A HIS 330 n 166 HIS 330 A VAL 331 n 167 VAL 331 A LEU 332 n 168 LEU 332 A LEU 333 n 169 LEU 333 A MET 334 n 170 MET 334 A ALA 335 n 171 ALA 335 A ILE 336 n 172 ILE 336 A CYS 337 n 173 CYS 337 A ILE 338 n 174 ILE 338 A VAL 339 n 175 VAL 339 A SER 340 n 176 SER 340 A PRO 341 n 177 PRO 341 A ASP 342 n 178 ASP 342 A ARG 343 n 179 ARG 343 A PRO 344 n 180 PRO 344 A GLY 345 n 181 GLY 345 A VAL 346 n 182 VAL 346 A GLN 347 n 183 GLN 347 A ASP 348 n 184 ASP 348 A ALA 349 n 185 ALA 349 A ALA 350 n 186 ALA 350 A LEU 351 n 187 LEU 351 A ILE 352 n 188 ILE 352 A GLU 353 n 189 GLU 353 A ALA 354 n 190 ALA 354 A ILE 355 n 191 ILE 355 A GLN 356 n 192 GLN 356 A ASP 357 n 193 ASP 357 A ARG 358 n 194 ARG 358 A LEU 359 n 195 LEU 359 A SER 360 n 196 SER 360 A ASN 361 n 197 ASN 361 A THR 362 n 198 THR 362 A LEU 363 n 199 LEU 363 A GLN 364 n 200 GLN 364 A THR 365 n 201 THR 365 A TYR 366 n 202 TYR 366 A ILE 367 n 203 ILE 367 A ARG 368 n 204 ARG 368 A CYS 369 n 205 CYS 369 A ARG 370 n 206 ARG 370 A HIS 371 n 207 HIS 371 A PRO 372 n 208 PRO 372 A PRO 373 n 209 PRO 373 A PRO 374 n 210 PRO 374 A GLY 375 n 211 GLY 375 A SER 376 n 212 SER 376 A HIS 377 n 213 HIS 377 A LEU 378 n 214 LEU 378 A LEU 379 n 215 LEU 379 A TYR 380 n 216 TYR 380 A ALA 381 n 217 ALA 381 A LYS 382 n 218 LYS 382 A MET 383 n 219 MET 383 A ILE 384 n 220 ILE 384 A GLN 385 n 221 GLN 385 A LYS 386 n 222 LYS 386 A LEU 387 n 223 LEU 387 A ALA 388 n 224 ALA 388 A ASP 389 n 225 ASP 389 A LEU 390 n 226 LEU 390 A ARG 391 n 227 ARG 391 A SER 392 n 228 SER 392 A LEU 393 n 229 LEU 393 A ASN 394 n 230 ASN 394 A GLU 395 n 231 GLU 395 A GLU 396 n 232 GLU 396 A HIS 397 n 233 HIS 397 A SER 398 n 234 SER 398 A LYS 399 n 235 LYS 399 A GLN 400 n 236 GLN 400 A TYR 401 n 237 TYR 401 A ARG 402 n 238 ARG 402 A CYS 403 n 239 CYS 403 A LEU 404 n 240 LEU 404 A SER 405 n 241 SER 405 A PHE 406 n 242 PHE 406 A GLN 407 n 243 GLN 407 A PRO 408 n 244 PRO 408 A GLU 409 n 245 GLU 409 A CYS 410 n 246 CYS 410 A SER 411 n 247 SER 411 A MET 412 n 248 MET 412 A LYS 413 n 249 LYS 413 A LEU 414 n 250 LEU 414 A THR 415 n 251 THR 415 A PRO 416 n 252 PRO 416 A LEU 417 n 253 LEU 417 A VAL 418 n 254 VAL 418 A LEU 419 n 255 LEU 419 A GLU 420 n 256 GLU 420 A VAL 421 n 257 VAL 421 A PHE 422 n 258 PHE 422 A GLY 423 n 259 GLY 423 A n 260 424 A n 261 425 A n 262 426 A n 263 427 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 280 A N THR 116 A O SER 285 A O SER 121 A N TRP 286 A N TRP 122 A O TYR 295 A O TYR 131 1 A GLY 114 A GLY 1 1 Y 1 A SER 115 A SER 2 1 Y 1 A HIS 116 A HIS 3 1 Y 1 A MET 117 A MET 4 1 Y 1 A GLY 163 A GLY 50 1 Y 1 A GLY 164 A GLY 51 1 Y 1 A ASN 424 A ASN 260 1 Y 1 A GLU 425 A GLU 261 1 Y 1 A ILE 426 A ILE 262 1 Y 1 A SER 427 A SER 263 1 Y 1 A A SER HIS 376 377 148.53 1 A ASN 160 -38.45 126.35 1 A ASN 290 69.35 85.89 1 A GLN 291 -20.91 -42.77 1 A ASP 342 -101.35 68.65 1 A GLN 347 -85.80 -79.00 1 A PRO 373 -22.70 -68.87 1 A LEU 414 -103.80 -158.89 15.758 -0.05 0.00 0.00 -0.03 0.00 0.07 0.908 0.844 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.29369 0.21490 0.21844 2.60 48.06 472 9319 4.8 99.32 9.986 0.224 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.366 0.80 0.80 1.40 1DB1 MAXIMUM LIKELIHOOD MASK 2.60 48.06 9 2059 32 0 2018 0.015 0.022 2092 1.814 2.004 2835 6.277 5.000 251 39.782 24.286 91 18.314 15.000 383 20.832 15.000 13 0.212 0.200 328 0.005 0.020 1535 0.234 0.200 978 0.311 0.200 1431 0.131 0.200 73 0.196 0.200 37 0.163 0.200 5 0.888 1.500 1316 1.469 2.000 2065 2.080 3.000 870 3.375 4.500 770 0.363 0.255 2.669 29 624 20 93.42 2.60 50.0 3AX8 9906 3 3 1 3.5 99.3 2.60 2.70 3.27 1 2.1 94.7 data collection HKL-2000 phasing MOLREP refinement REFMAC 5.2.0019 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of the human vitamin D receptor ligand binding domain complexed with 15alpha-methoxy-1alpha,25-dihydroxyvitamin D3 1 N N 2 N N 3 N N A SER 125 A SER 12 HELX_P A TYR 143 A TYR 30 1 1 19 A ASP 149 A ASP 36 HELX_P A PHE 153 A PHE 40 5 2 5 A SER 216 A SER 52 HELX_P A LEU 224 A LEU 60 1 3 9 A MET 226 A MET 62 HELX_P A MET 247 A MET 83 1 4 22 A GLY 250 A GLY 86 HELX_P A LEU 254 A LEU 90 5 5 5 A THR 255 A THR 91 HELX_P A SER 275 A SER 111 1 6 21 A ASN 290 A ASN 126 HELX_P A ASP 292 A ASP 128 5 7 3 A ARG 296 A ARG 132 HELX_P A LYS 302 A LYS 138 1 8 7 A SER 306 A SER 142 HELX_P A LEU 323 A LEU 159 1 9 18 A HIS 326 A HIS 162 HELX_P A VAL 339 A VAL 175 1 10 14 A ASP 348 A ASP 184 HELX_P A HIS 371 A HIS 207 1 11 24 A HIS 377 A HIS 213 HELX_P A SER 405 A SER 241 1 12 29 A CYS 410 A CYS 246 HELX_P A LEU 414 A LEU 250 5 13 5 A THR 415 A THR 251 HELX_P A GLY 423 A GLY 259 1 14 9 TRANSCRIPTION Hormone Receptor, Transcription A GLY 289 A GLY 125 1 A ASN 290 A ASN 126 19.73 A PRO 372 A PRO 208 1 A PRO 373 A PRO 209 -15.65 A PRO 373 A PRO 209 1 A PRO 374 A PRO 210 2.28 VDR_HUMAN UNP 1 118 P11473 DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGG VDR_HUMAN UNP 1 216 P11473 SVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKY RVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPG SHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFGNEIS 118 164 3AX8 118 164 P11473 A 1 5 51 216 427 3AX8 216 427 P11473 A 2 52 263 1 expression tag GLY 114 3AX8 A P11473 UNP 1 1 expression tag SER 115 3AX8 A P11473 UNP 2 1 expression tag HIS 116 3AX8 A P11473 UNP 3 1 expression tag MET 117 3AX8 A P11473 UNP 4 3 anti-parallel anti-parallel A PHE 279 A PHE 115 A THR 280 A THR 116 A SER 285 A SER 121 A THR 287 A THR 123 A LYS 294 A LYS 130 A TYR 295 A TYR 131 BINDING SITE FOR RESIDUE EIM A 1 A EIM 1 Software 14 A TYR 143 A TYR 30 14 1_555 A LEU 227 A LEU 63 14 1_555 A VAL 234 A VAL 70 14 1_555 A SER 237 A SER 73 14 1_555 A MET 272 A MET 108 14 1_555 A ARG 274 A ARG 110 14 1_555 A SER 275 A SER 111 14 1_555 A SER 278 A SER 114 14 1_555 A TRP 286 A TRP 122 14 1_555 A CYS 288 A CYS 124 14 1_555 A HIS 305 A HIS 141 14 1_555 A LEU 313 A LEU 149 14 1_555 A HIS 397 A HIS 233 14 1_555 A VAL 418 A VAL 254 14 1_555 19 P 21 21 21