0.013705
0.000000
0.000000
0.000000
0.013705
0.000000
0.000000
0.000000
0.030713
0.00000
0.00000
0.00000
Isogai, S.
Morimoto, D.
Arita, K.
Unzai, S.
Tenno, T.
Hasegawa, J.
Sou, Y.
Komatsu, M.
Tanaka, K.
Shirakawa, M.
Tochio, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
72.967
72.967
32.560
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
S
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
R
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
286
31864
31874
10.1074/jbc.M111.259630
21715324
Crystal structure of the ubiquitin-associated (UBA) domain of p62 and its interaction with ubiquitin.
2011
10.2210/pdb3b0f/pdb
pdb_00003b0f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
CCD
2008-01-25
ADSC QUANTUM 315
CCD
2008-01-25
ADSC QUANTUM 315
Numerical link type Si(111) double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
Numerical link type Si(111) double crystal monochromator
MAD
M
x-ray
1
1.000
1.0
0.97928
1.0
0.97909
1.0
0.96405
1.0
0.98317
1.0
BL-5A
Photon Factory
1.000
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-5A
BL-5A
Photon Factory
0.97928, 0.97909, 0.96405, 0.98317
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-5A
5817.500
Sequestosome-1
UBA domain (UNP RESIDUES 391-438)
2
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
77
nat
water
STONE14, Ubiquitin-binding protein p62
no
no
GPLGSEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH
GPLGSEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Sqstm1, A170, STAP
10090
Mus musculus
562
Escherichia coli
BL21(DE3)
plasmid
pGEX-6P1
2
1.86
33.96
VAPOR DIFFUSION, HANGING DROP
5.0
100mM Citrate buffer pH5.0, 1.8M Ammonium Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
citation
citation_author
reflns
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Data collection
Database references
Derived calculations
1
0
2011-06-29
1
1
2011-07-13
1
2
2017-10-11
1
3
2019-11-13
1
4
2024-03-13
_citation.country
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation_author.name
_reflns.pdbx_Rmerge_I_obs
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2011-06-09
REL
REL
SO4
SULFATE ION
HOH
water
SO4
1
2
SO4
SO4
54
A
HOH
1
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
5
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
61
3
HOH
HOH
61
A
HOH
9
3
HOH
HOH
62
A
HOH
11
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
12
3
HOH
HOH
66
A
HOH
13
3
HOH
HOH
67
A
HOH
15
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
16
3
HOH
HOH
73
A
HOH
18
3
HOH
HOH
74
A
HOH
19
3
HOH
HOH
75
A
HOH
20
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
22
3
HOH
HOH
78
A
HOH
23
3
HOH
HOH
79
A
HOH
24
3
HOH
HOH
80
A
HOH
30
3
HOH
HOH
81
A
HOH
34
3
HOH
HOH
82
A
HOH
37
3
HOH
HOH
83
A
HOH
42
3
HOH
HOH
84
A
HOH
43
3
HOH
HOH
85
A
HOH
48
3
HOH
HOH
86
A
HOH
49
3
HOH
HOH
87
A
HOH
50
3
HOH
HOH
88
A
HOH
53
3
HOH
HOH
89
A
HOH
54
3
HOH
HOH
54
B
HOH
55
3
HOH
HOH
55
B
HOH
2
3
HOH
HOH
56
B
HOH
57
3
HOH
HOH
57
B
HOH
3
3
HOH
HOH
58
B
HOH
4
3
HOH
HOH
59
B
HOH
6
3
HOH
HOH
60
B
HOH
7
3
HOH
HOH
61
B
HOH
62
3
HOH
HOH
62
B
HOH
63
3
HOH
HOH
63
B
HOH
8
3
HOH
HOH
64
B
HOH
10
3
HOH
HOH
65
B
HOH
66
3
HOH
HOH
66
B
HOH
67
3
HOH
HOH
67
B
HOH
68
3
HOH
HOH
68
B
HOH
14
3
HOH
HOH
69
B
HOH
17
3
HOH
HOH
70
B
HOH
21
3
HOH
HOH
71
B
HOH
25
3
HOH
HOH
72
B
HOH
73
3
HOH
HOH
73
B
HOH
74
3
HOH
HOH
74
B
HOH
75
3
HOH
HOH
75
B
HOH
76
3
HOH
HOH
76
B
HOH
26
3
HOH
HOH
77
B
HOH
27
3
HOH
HOH
78
B
HOH
28
3
HOH
HOH
79
B
HOH
29
3
HOH
HOH
80
B
HOH
31
3
HOH
HOH
81
B
HOH
32
3
HOH
HOH
82
B
HOH
33
3
HOH
HOH
83
B
HOH
35
3
HOH
HOH
84
B
HOH
36
3
HOH
HOH
85
B
HOH
38
3
HOH
HOH
86
B
HOH
39
3
HOH
HOH
87
B
HOH
40
3
HOH
HOH
88
B
HOH
41
3
HOH
HOH
89
B
HOH
44
3
HOH
HOH
90
B
HOH
45
3
HOH
HOH
91
B
HOH
46
3
HOH
HOH
92
B
HOH
47
3
HOH
HOH
93
B
HOH
51
3
HOH
HOH
94
B
HOH
52
3
HOH
HOH
95
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
ASP
8
n
8
ASP
8
A
PRO
9
n
9
PRO
9
A
ARG
10
n
10
ARG
10
A
LEU
11
n
11
LEU
11
A
ILE
12
n
12
ILE
12
A
GLU
13
n
13
GLU
13
A
SER
14
n
14
SER
14
A
LEU
15
n
15
LEU
15
A
SER
16
n
16
SER
16
A
GLN
17
n
17
GLN
17
A
MET
18
n
18
MET
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
MET
21
n
21
MET
21
A
GLY
22
n
22
GLY
22
A
PHE
23
n
23
PHE
23
A
SER
24
n
24
SER
24
A
ASP
25
n
25
ASP
25
A
GLU
26
n
26
GLU
26
A
GLY
27
n
27
GLY
27
A
GLY
28
n
28
GLY
28
A
TRP
29
n
29
TRP
29
A
LEU
30
n
30
LEU
30
A
THR
31
n
31
THR
31
A
ARG
32
n
32
ARG
32
A
LEU
33
n
33
LEU
33
A
LEU
34
n
34
LEU
34
A
GLN
35
n
35
GLN
35
A
THR
36
n
36
THR
36
A
LYS
37
n
37
LYS
37
A
ASN
38
n
38
ASN
38
A
TYR
39
n
39
TYR
39
A
ASP
40
n
40
ASP
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
ALA
43
n
43
ALA
43
A
ALA
44
n
44
ALA
44
A
LEU
45
n
45
LEU
45
A
ASP
46
n
46
ASP
46
A
THR
47
n
47
THR
47
A
ILE
48
n
48
ILE
48
A
GLN
49
n
49
GLN
49
A
TYR
50
n
50
TYR
50
A
n
51
51
A
n
52
52
A
n
53
53
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
ASP
8
n
8
ASP
8
B
PRO
9
n
9
PRO
9
B
ARG
10
n
10
ARG
10
B
LEU
11
n
11
LEU
11
B
ILE
12
n
12
ILE
12
B
GLU
13
n
13
GLU
13
B
SER
14
n
14
SER
14
B
LEU
15
n
15
LEU
15
B
SER
16
n
16
SER
16
B
GLN
17
n
17
GLN
17
B
MET
18
n
18
MET
18
B
LEU
19
n
19
LEU
19
B
SER
20
n
20
SER
20
B
MET
21
n
21
MET
21
B
GLY
22
n
22
GLY
22
B
PHE
23
n
23
PHE
23
B
SER
24
n
24
SER
24
B
ASP
25
n
25
ASP
25
B
GLU
26
n
26
GLU
26
B
GLY
27
n
27
GLY
27
B
GLY
28
n
28
GLY
28
B
TRP
29
n
29
TRP
29
B
LEU
30
n
30
LEU
30
B
THR
31
n
31
THR
31
B
ARG
32
n
32
ARG
32
B
LEU
33
n
33
LEU
33
B
LEU
34
n
34
LEU
34
B
GLN
35
n
35
GLN
35
B
THR
36
n
36
THR
36
B
LYS
37
n
37
LYS
37
B
ASN
38
n
38
ASN
38
B
TYR
39
n
39
TYR
39
B
ASP
40
n
40
ASP
40
B
ILE
41
n
41
ILE
41
B
GLY
42
n
42
GLY
42
B
ALA
43
n
43
ALA
43
B
ALA
44
n
44
ALA
44
B
LEU
45
n
45
LEU
45
B
ASP
46
n
46
ASP
46
B
THR
47
n
47
THR
47
B
ILE
48
n
48
ILE
48
B
GLN
49
n
49
GLN
49
B
TYR
50
n
50
TYR
50
B
n
51
51
B
n
52
52
B
n
53
53
B
3.0916
0.4330
-1.1005
9.5892
2.0545
3.0336
0.0720
-0.1036
0.1072
0.1439
-0.0954
0.0055
-0.1646
0.1376
0.0234
0.0478
-0.0091
0.0187
0.0612
0.0072
0.0758
refined
9.5626
-9.8215
-2.1438
X-RAY DIFFRACTION
6.6639
1.7954
-1.4928
5.2076
1.2763
3.1244
-0.0208
0.1465
0.0230
-0.0687
0.0489
0.1869
0.0508
-0.0580
-0.0280
0.0372
0.0102
0.0025
0.0577
0.0159
0.0586
refined
8.3705
-19.2525
-6.9589
X-RAY DIFFRACTION
4.2482
-5.6342
0.9367
10.3815
-0.4955
2.3570
0.1740
0.2319
-0.2868
-0.3664
-0.0007
0.2670
-0.0379
0.0302
-0.1733
0.0504
-0.0180
-0.0007
0.1057
0.0027
0.1174
refined
0.4333
-16.6996
-10.9963
X-RAY DIFFRACTION
3.2031
-0.0237
0.4076
0.9147
0.3597
3.6067
-0.0362
-0.0843
-0.0371
-0.0080
0.1010
0.0511
0.0466
0.1015
-0.0648
0.0386
0.0041
0.0169
0.0587
0.0024
0.0825
refined
-0.9434
-12.6891
-1.9173
X-RAY DIFFRACTION
4.0391
-0.5687
0.0555
9.8003
-0.6154
1.6031
-0.0142
-0.2599
-0.0925
0.1698
0.1130
-0.2324
-0.0614
-0.0503
-0.0988
0.0145
0.0172
-0.0006
0.0826
0.0247
0.0647
refined
4.1736
-16.7869
3.0215
X-RAY DIFFRACTION
10.5177
0.8559
5.6453
5.7217
0.2027
8.6464
0.1028
-0.2046
-0.7930
-0.1395
-0.0722
-0.3868
0.4351
0.1649
-0.0306
0.0399
0.0079
0.0115
0.0339
0.0506
0.1581
refined
-1.5268
-24.8038
0.0779
X-RAY DIFFRACTION
7.7033
0.4011
2.0814
1.6550
-3.2970
7.6598
-0.0385
-0.0548
0.2665
0.1891
0.2246
0.1355
-0.4132
-0.5037
-0.1861
0.1298
0.0385
0.0033
0.1295
-0.0014
0.0218
refined
-21.7160
-17.2429
-8.5714
X-RAY DIFFRACTION
5.4191
-3.3838
0.7358
6.7334
-1.3952
3.1592
0.0055
-0.0382
-0.0301
-0.1083
0.1292
-0.0372
-0.0019
0.0251
-0.1347
0.0525
-0.0092
0.0142
0.0406
-0.0208
0.0390
refined
-16.0787
-22.3364
-3.1311
X-RAY DIFFRACTION
2.2918
2.0215
-1.5921
6.8541
1.0923
2.3371
0.0081
-0.2472
0.0961
0.0604
0.0752
-0.0051
0.0488
0.2900
-0.0833
0.0284
0.0154
-0.0239
0.1570
-0.0604
0.0907
refined
-9.2174
-17.6592
-0.7467
X-RAY DIFFRACTION
5.0442
1.9303
2.9708
2.3459
3.8771
6.4823
-0.2951
0.1101
0.6445
-0.1171
0.0857
0.0943
-0.1611
0.0831
0.2094
0.0682
-0.0206
-0.0198
0.0583
-0.0144
0.1906
refined
-10.6423
-14.8478
-11.1535
X-RAY DIFFRACTION
10.1004
0.4805
1.2142
5.1657
1.2073
0.4354
-0.1808
0.2492
-0.2626
-0.2718
0.1543
0.0621
-0.0943
0.0620
0.0265
0.0616
-0.0155
0.0113
0.0652
-0.0236
0.0849
refined
-11.0229
-23.4824
-11.7292
X-RAY DIFFRACTION
9.7024
1.8050
2.5238
7.6851
1.5372
8.3930
-0.1080
-0.1124
-0.7286
0.2344
0.0217
-0.1935
0.2411
0.0967
0.0862
0.0262
0.0105
0.0297
0.0475
-0.0201
0.1272
refined
-3.6847
-25.7337
-8.4490
X-RAY DIFFRACTION
A
8
A
15
X-RAY DIFFRACTION
1
A
16
A
21
X-RAY DIFFRACTION
2
A
22
A
27
X-RAY DIFFRACTION
3
A
28
A
37
X-RAY DIFFRACTION
4
A
38
A
45
X-RAY DIFFRACTION
5
A
46
A
50
X-RAY DIFFRACTION
6
B
8
B
13
X-RAY DIFFRACTION
7
B
14
B
20
X-RAY DIFFRACTION
8
B
21
B
31
X-RAY DIFFRACTION
9
B
32
B
39
X-RAY DIFFRACTION
10
B
40
B
45
X-RAY DIFFRACTION
11
B
46
B
50
X-RAY DIFFRACTION
12
author_and_software_defined_assembly
PISA
2
dimeric
1350
-6
4670
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
1
A
GLY
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
GLY
4
A
GLY
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
ALA
7
A
ALA
7
1
Y
1
A
SER
51
A
SER
51
1
Y
1
A
LYS
52
A
LYS
52
1
Y
1
A
HIS
53
A
HIS
53
1
Y
1
B
GLY
1
B
GLY
1
1
Y
1
B
PRO
2
B
PRO
2
1
Y
1
B
LEU
3
B
LEU
3
1
Y
1
B
GLY
4
B
GLY
4
1
Y
1
B
SER
5
B
SER
5
1
Y
1
B
GLU
6
B
GLU
6
1
Y
1
B
ALA
7
B
ALA
7
1
Y
1
B
SER
51
B
SER
51
1
Y
1
B
LYS
52
B
LYS
52
1
Y
1
B
HIS
53
B
HIS
53
1
Y
1
A
ASN
38
B
39.91
47.06
11.036
-0.80
0.00
0.00
-0.80
0.00
1.59
0.966
0.958
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.20054
0.17011
0.17167
0.17167
1.40
50.0
888
17323
16435
5.1
96.93
2.283
0.041
RANDOM
1,2
THROUGHOUT
0
MAD
0.068
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
1.40
50.0
77
760
5
0
678
0.016
0.021
873
1.697
1.978
1207
4.326
5.000
125
36.195
25.111
45
14.544
15.000
166
13.295
15.000
7
0.116
0.200
129
0.009
0.020
697
1.418
1.500
529
2.024
2.000
872
3.027
3.000
344
4.179
4.500
327
1.700
3.000
873
6.591
3.000
77
3.052
3.000
843
0.310
0.225
1.436
69
994
20
82.28
1.4
51.57
3B0F
17371
17371
0
0
0.048
1,2
13.1
13.1
97.0
0.356
1.4
1.45
1,2
11.0
82.5
data collection
SERGUI
phasing
SOLVE
refinement
REFMAC
5.5.0072
data scaling
HKL-2000
Crystal structure of the UBA domain of p62 and its interaction with ubiquitin
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
A
ASP
8
A
ASP
8
HELX_P
A
MET
21
A
MET
21
1
1
14
A
ASP
25
A
ASP
25
HELX_P
A
GLY
27
A
GLY
27
5
2
3
A
GLY
28
A
GLY
28
HELX_P
A
LYS
37
A
LYS
37
1
3
10
A
ASP
40
A
ASP
40
HELX_P
A
ILE
48
A
ILE
48
1
4
9
B
ASP
8
B
ASP
8
HELX_P
B
MET
21
B
MET
21
1
5
14
B
ASP
25
B
ASP
25
HELX_P
B
GLY
27
B
GLY
27
5
6
3
B
GLY
28
B
GLY
28
HELX_P
B
LYS
37
B
LYS
37
1
7
10
B
ASP
40
B
ASP
40
HELX_P
B
ILE
48
B
ILE
48
1
8
9
PROTEIN BINDING
Ubiquitin, Autophagy, PROTEIN BINDING
SQSTM_MOUSE
UNP
1
391
Q64337
EADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH
391
438
3B0F
6
53
Q64337
A
1
6
53
391
438
3B0F
6
53
Q64337
B
1
6
53
1
expression tag
GLY
1
3B0F
A
Q64337
UNP
1
1
expression tag
PRO
2
3B0F
A
Q64337
UNP
2
1
expression tag
LEU
3
3B0F
A
Q64337
UNP
3
1
expression tag
GLY
4
3B0F
A
Q64337
UNP
4
1
expression tag
SER
5
3B0F
A
Q64337
UNP
5
2
expression tag
GLY
1
3B0F
B
Q64337
UNP
1
2
expression tag
PRO
2
3B0F
B
Q64337
UNP
2
2
expression tag
LEU
3
3B0F
B
Q64337
UNP
3
2
expression tag
GLY
4
3B0F
B
Q64337
UNP
4
2
expression tag
SER
5
3B0F
B
Q64337
UNP
5
BINDING SITE FOR RESIDUE SO4 A 54
A
SO4
54
Software
7
A
ARG
32
A
ARG
32
7
1_555
A
ARG
32
A
ARG
32
7
7_555
A
THR
36
A
THR
36
7
7_555
A
HOH
71
D
HOH
7
7_555
A
HOH
74
D
HOH
7
1_555
B
GLY
27
B
GLY
27
7
7_555
B
ARG
32
B
ARG
32
7
1_555
96
P 43 21 2