0.012553 0.000000 0.000000 0.000000 0.012553 0.000000 0.000000 0.000000 0.012553 0.00000 0.00000 0.00000 Wernimont, A.K. Lew, J. Kozieradzki, I. Lin, Y.H. Sun, X. Khuu, C. Zhao, Y. Schapira, M. Arrowsmith, C.H. Edwards, A.M. Weigelt, J. Bochkarev, A. Hui, R. Artz, J.D. Xiao, T. Structural Genomics Consortium (SGC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 90.00 79.661 79.661 79.661 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing To be Published 0353 Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax. 10.2210/pdb3b6n/pdb pdb_00003b6n 100 1 IMAGE PLATE 2007-05-30 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E+ DW 20215.066 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 Residues 102-287 1 man polymer 65.409 ZINC ION 1 syn non-polymer 18.015 water 40 nat water no no GYDGVRIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPVETISVLSHSDGDVIFHALVDALLGGM SCSDLGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKISPIREEIVRNISSALGISESQVSLKGK THEQLGPVGQKKAIECFANALLIRKQS GYDGVRIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPVETISVLSHSDGDVIFHALVDALLGGM SCSDLGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKISPIREEIVRNISSALGISESQVSLKGK THEQLGPVGQKKAIECFANALLIRKQS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Plasmodium Plasmodium vivax Salvador I Escherichia sample PV003920, PVX_003920 126793 Plasmodium vivax SaI-1 562 Escherichia coli DH5a Plasmid p15-mhl-LIC 1 2.08 40.98 VAPOR DIFFUSION, HANGING DROP 3.5 25% PEG 3350, 0.1 M Citric acid pH 3.5, 2 mM ZnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Structural Genomics Consortium SGC software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2007-11-20 1 1 2011-07-13 1 2 2017-10-25 1 3 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2007-10-29 REL REL ZN ZINC ION HOH water 1VH8 PDB entry 1VH8 PDB experimental model ZN 1157 2 ZN ZN 1157 A HOH 1158 3 HOH HOH 1158 A HOH 1159 3 HOH HOH 1159 A HOH 1160 3 HOH HOH 1160 A HOH 1161 3 HOH HOH 1161 A HOH 1162 3 HOH HOH 1162 A HOH 1163 3 HOH HOH 1163 A HOH 1164 3 HOH HOH 1164 A HOH 1165 3 HOH HOH 1165 A HOH 1166 3 HOH HOH 1166 A HOH 1167 3 HOH HOH 1167 A HOH 1168 3 HOH HOH 1168 A HOH 1169 3 HOH HOH 1169 A HOH 1170 3 HOH HOH 1170 A HOH 1171 3 HOH HOH 1171 A HOH 1172 3 HOH HOH 1172 A HOH 1173 3 HOH HOH 1173 A HOH 1174 3 HOH HOH 1174 A HOH 1175 3 HOH HOH 1175 A HOH 1176 3 HOH HOH 1176 A HOH 1177 3 HOH HOH 1177 A HOH 1178 3 HOH HOH 1178 A HOH 1179 3 HOH HOH 1179 A HOH 1180 3 HOH HOH 1180 A HOH 1181 3 HOH HOH 1181 A HOH 1182 3 HOH HOH 1182 A HOH 1183 3 HOH HOH 1183 A HOH 1184 3 HOH HOH 1184 A HOH 1185 3 HOH HOH 1185 A HOH 1187 3 HOH HOH 1186 A HOH 1188 3 HOH HOH 1187 A HOH 1190 3 HOH HOH 1188 A HOH 1191 3 HOH HOH 1189 A HOH 1192 3 HOH HOH 1190 A HOH 1194 3 HOH HOH 1191 A HOH 1195 3 HOH HOH 1192 A HOH 1 3 HOH HOH 1193 A HOH 2 3 HOH HOH 1194 A HOH 3 3 HOH HOH 1195 A HOH 1 3 HOH HOH 1196 A HOH 2 3 HOH HOH 1197 A 2.500 2.500 39.830 39.830 Phaser MODE: MR_AUTO n 1 1 A n 2 2 A n 3 3 A GLY 4 n 4 GLY 4 A VAL 5 n 5 VAL 5 A ARG 6 n 6 ARG 6 A ILE 7 n 7 ILE 7 A GLY 8 n 8 GLY 8 A GLN 9 n 9 GLN 9 A GLY 10 n 10 GLY 10 A TYR 11 n 11 TYR 11 A ASP 12 n 12 ASP 12 A ILE 13 n 13 ILE 13 A HIS 14 n 14 HIS 14 A GLN 15 n 15 GLN 15 A ILE 16 n 16 ILE 16 A ARG 17 n 17 ARG 17 A VAL 18 n 18 VAL 18 A GLY 19 n 19 GLY 19 A PRO 20 n 20 PRO 20 A PRO 21 n 21 PRO 21 A GLU 22 n 22 GLU 22 A n 23 23 A n 24 24 A n 25 25 A n 26 26 A n 27 27 A n 28 28 A n 29 29 A n 30 30 A n 31 31 A n 32 32 A n 33 33 A n 34 34 A n 35 35 A n 36 36 A n 37 37 A n 38 38 A n 39 39 A n 40 40 A LYS 41 n 41 LYS 41 A GLN 42 n 42 GLN 42 A SER 43 n 43 SER 43 A PHE 44 n 44 PHE 44 A LYS 45 n 45 LYS 45 A ARG 46 n 46 ARG 46 A LEU 47 n 47 LEU 47 A THR 48 n 48 THR 48 A ILE 49 n 49 ILE 49 A GLY 50 n 50 GLY 50 A GLY 51 n 51 GLY 51 A VAL 52 n 52 VAL 52 A PRO 53 n 53 PRO 53 A VAL 54 n 54 VAL 54 A GLU 55 n 55 GLU 55 A THR 56 n 56 THR 56 A ILE 57 n 57 ILE 57 A SER 58 n 58 SER 58 A VAL 59 n 59 VAL 59 A LEU 60 n 60 LEU 60 A SER 61 n 61 SER 61 A HIS 62 n 62 HIS 62 A SER 63 n 63 SER 63 A ASP 64 n 64 ASP 64 A GLY 65 n 65 GLY 65 A ASP 66 n 66 ASP 66 A VAL 67 n 67 VAL 67 A ILE 68 n 68 ILE 68 A PHE 69 n 69 PHE 69 A HIS 70 n 70 HIS 70 A ALA 71 n 71 ALA 71 A LEU 72 n 72 LEU 72 A VAL 73 n 73 VAL 73 A ASP 74 n 74 ASP 74 A ALA 75 n 75 ALA 75 A LEU 76 n 76 LEU 76 A LEU 77 n 77 LEU 77 A GLY 78 n 78 GLY 78 A GLY 79 n 79 GLY 79 A MET 80 n 80 MET 80 A SER 81 n 81 SER 81 A CYS 82 n 82 CYS 82 A SER 83 n 83 SER 83 A n 84 84 A n 85 85 A n 86 86 A n 87 87 A n 88 88 A n 89 89 A n 90 90 A n 91 91 A n 92 92 A n 93 93 A n 94 94 A n 95 95 A n 96 96 A n 97 97 A n 98 98 A LYS 99 n 99 LYS 99 A ASN 100 n 100 ASN 100 A SER 101 n 101 SER 101 A LEU 102 n 102 LEU 102 A SER 103 n 103 SER 103 A PHE 104 n 104 PHE 104 A LEU 105 n 105 LEU 105 A ARG 106 n 106 ARG 106 A TYR 107 n 107 TYR 107 A ALA 108 n 108 ALA 108 A ARG 109 n 109 ARG 109 A LEU 110 n 110 LEU 110 A LEU 111 n 111 LEU 111 A LEU 112 n 112 LEU 112 A TYR 113 n 113 TYR 113 A LYS 114 n 114 LYS 114 A ARG 115 n 115 ARG 115 A ASN 116 n 116 ASN 116 A TYR 117 n 117 TYR 117 A ALA 118 n 118 ALA 118 A ILE 119 n 119 ILE 119 A ALA 120 n 120 ALA 120 A ASN 121 n 121 ASN 121 A VAL 122 n 122 VAL 122 A ASP 123 n 123 ASP 123 A ILE 124 n 124 ILE 124 A ILE 125 n 125 ILE 125 A VAL 126 n 126 VAL 126 A ILE 127 n 127 ILE 127 A ALA 128 n 128 ALA 128 A GLU 129 n 129 GLU 129 A VAL 130 n 130 VAL 130 A PRO 131 n 131 PRO 131 A LYS 132 n 132 LYS 132 A ILE 133 n 133 ILE 133 A SER 134 n 134 SER 134 A PRO 135 n 135 PRO 135 A ILE 136 n 136 ILE 136 A ARG 137 n 137 ARG 137 A GLU 138 n 138 GLU 138 A GLU 139 n 139 GLU 139 A ILE 140 n 140 ILE 140 A VAL 141 n 141 VAL 141 A ARG 142 n 142 ARG 142 A ASN 143 n 143 ASN 143 A ILE 144 n 144 ILE 144 A SER 145 n 145 SER 145 A SER 146 n 146 SER 146 A ALA 147 n 147 ALA 147 A LEU 148 n 148 LEU 148 A GLY 149 n 149 GLY 149 A ILE 150 n 150 ILE 150 A SER 151 n 151 SER 151 A GLU 152 n 152 GLU 152 A SER 153 n 153 SER 153 A GLN 154 n 154 GLN 154 A VAL 155 n 155 VAL 155 A SER 156 n 156 SER 156 A LEU 157 n 157 LEU 157 A LYS 158 n 158 LYS 158 A GLY 159 n 159 GLY 159 A LYS 160 n 160 LYS 160 A THR 161 n 161 THR 161 A HIS 162 n 162 HIS 162 A GLU 163 n 163 GLU 163 A GLN 164 n 164 GLN 164 A LEU 165 n 165 LEU 165 A GLY 166 n 166 GLY 166 A PRO 167 n 167 PRO 167 A VAL 168 n 168 VAL 168 A GLY 169 n 169 GLY 169 A GLN 170 n 170 GLN 170 A LYS 171 n 171 LYS 171 A LYS 172 n 172 LYS 172 A ALA 173 n 173 ALA 173 A ILE 174 n 174 ILE 174 A GLU 175 n 175 GLU 175 A CYS 176 n 176 CYS 176 A PHE 177 n 177 PHE 177 A ALA 178 n 178 ALA 178 A ASN 179 n 179 ASN 179 A ALA 180 n 180 ALA 180 A LEU 181 n 181 LEU 181 A LEU 182 n 182 LEU 182 A ILE 183 n 183 ILE 183 A ARG 184 n 184 ARG 184 A LYS 185 n 185 LYS 185 A GLN 186 n 186 GLN 186 A n 187 187 A software_defined_assembly PISA 3 trimeric 5600 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8_555 -z,x+1/2,-y+1/2 crystal symmetry operation 0.0000000000 39.8305000000 39.8305000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -1.0000000000 0.0000000000 0.0000000000 11_455 y-1/2,-z+1/2,-x crystal symmetry operation -39.8305000000 39.8305000000 0.0000000000 A N LEU 47 A N LEU 47 A O ILE 57 A O ILE 57 A O LEU 60 A O LEU 60 A N GLN 15 A N GLN 15 A N ARG 6 A N ARG 6 A O LEU 182 A O LEU 182 A O ILE 183 A O ILE 183 A N ALA 118 A N ALA 118 A N ILE 124 A N ILE 124 A O SER 156 A O SER 156 1 A HOH 1184 C HOH 1 A CG GLU 22 A CG GLU 22 1 Y 1 A CD GLU 22 A CD GLU 22 1 Y 1 A OE1 GLU 22 A OE1 GLU 22 1 Y 1 A OE2 GLU 22 A OE2 GLU 22 1 Y 1 A CG LYS 41 A CG LYS 41 1 Y 1 A CD LYS 41 A CD LYS 41 1 Y 1 A CE LYS 41 A CE LYS 41 1 Y 1 A NZ LYS 41 A NZ LYS 41 1 Y 1 A CG LYS 99 A CG LYS 99 1 Y 1 A CD LYS 99 A CD LYS 99 1 Y 1 A CE LYS 99 A CE LYS 99 1 Y 1 A NZ LYS 99 A NZ LYS 99 1 Y 1 A CD1 PHE 104 A CD1 PHE 104 1 Y 1 A CD2 PHE 104 A CD2 PHE 104 1 Y 1 A CE1 PHE 104 A CE1 PHE 104 1 Y 1 A CE2 PHE 104 A CE2 PHE 104 1 Y 1 A CZ PHE 104 A CZ PHE 104 1 Y 1 A OE1 GLU 138 A OE1 GLU 138 1 Y 1 A OE2 GLU 138 A OE2 GLU 138 1 Y 1 A CG1 ILE 183 A CG1 ILE 183 1 Y 1 A CG2 ILE 183 A CG2 ILE 183 1 Y 1 A CD1 ILE 183 A CD1 ILE 183 1 Y 1 A GLY 1 A GLY 1 1 Y 1 A TYR 2 A TYR 2 1 Y 1 A ASP 3 A ASP 3 1 Y 1 A ASP 23 A ASP 23 1 Y 1 A ILE 24 A ILE 24 1 Y 1 A VAL 25 A VAL 25 1 Y 1 A ALA 26 A ALA 26 1 Y 1 A ASP 27 A ASP 27 1 Y 1 A THR 28 A THR 28 1 Y 1 A THR 29 A THR 29 1 Y 1 A ALA 30 A ALA 30 1 Y 1 A ASP 31 A ASP 31 1 Y 1 A THR 32 A THR 32 1 Y 1 A ALA 33 A ALA 33 1 Y 1 A ALA 34 A ALA 34 1 Y 1 A ASN 35 A ASN 35 1 Y 1 A THR 36 A THR 36 1 Y 1 A ALA 37 A ALA 37 1 Y 1 A ASP 38 A ASP 38 1 Y 1 A PRO 39 A PRO 39 1 Y 1 A ASN 40 A ASN 40 1 Y 1 A ASP 84 A ASP 84 1 Y 1 A LEU 85 A LEU 85 1 Y 1 A GLY 86 A GLY 86 1 Y 1 A THR 87 A THR 87 1 Y 1 A LEU 88 A LEU 88 1 Y 1 A PHE 89 A PHE 89 1 Y 1 A PRO 90 A PRO 90 1 Y 1 A ASP 91 A ASP 91 1 Y 1 A GLY 92 A GLY 92 1 Y 1 A SER 93 A SER 93 1 Y 1 A PRO 94 A PRO 94 1 Y 1 A LYS 95 A LYS 95 1 Y 1 A TYR 96 A TYR 96 1 Y 1 A LYS 97 A LYS 97 1 Y 1 A ASN 98 A ASN 98 1 Y 1 A SER 187 A SER 187 1 Y 1 A A GLY PRO 19 20 144.60 1 A A CB CG1 VAL VAL 67 67 -0.149 0.021 1.524 1.375 N 1 A ASN 116 72.42 35.21 45.102 0.949 0.920 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.25746 0.20405 0.20664 2.26 39.84 376 8159 8156 4.6 99.96 7.221 0.182 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.291 0.230 0.80 0.80 1.40 PDB entry 1VH8 MAXIMUM LIKELIHOOD MASK 2.26 39.84 40 1179 1 0 1138 0.021 0.022 1153 1.835 1.978 1555 8.023 5.000 149 36.390 22.955 44 19.282 15.000 209 12.583 15.000 10 0.123 0.200 185 0.007 0.020 835 0.217 0.200 476 0.308 0.200 776 0.162 0.200 51 0.207 0.200 35 0.220 0.200 6 1.121 1.500 773 1.940 2.000 1194 3.047 3.000 428 4.695 4.500 360 0.365 0.276 2.319 29 573 20 99.83 53.20 2.260 50.000 3B6N 8156 8156 0 0 0.105 0.070 1 8.900 18.300 100.000 0.8958 2.26 2.34 1.57 0.7177 6.80 99.90 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing R. J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu July 2, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.000 N Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase PV003920 from Plasmodium vivax 1 N N 2 N N 3 N N Authors state that the biological unit of this protein is unknown A ASP 66 A ASP 66 HELX_P A MET 80 A MET 80 1 1 15 A SER 101 A SER 101 HELX_P A ARG 115 A ARG 115 1 2 15 A ILE 133 A ILE 133 HELX_P A GLY 149 A GLY 149 1 3 17 A SER 151 A SER 151 HELX_P A SER 153 A SER 153 5 4 3 A LEU 165 A LEU 165 HELX_P A GLN 170 A GLN 170 1 5 6 metalc 2.331 A ASP 12 A OD2 ASP 12 1_555 A ZN 1157 B ZN ZN 1_555 LYASE malaria isoprenoid biosynthesis and prenylation pathways ISPF, Isoprene biosynthesis, Lyase, Structural Genomics, Structural Genomics Consortium, SGC A VAL 130 A VAL 130 1 A PRO 131 A PRO 131 1.46 A LYS 185 A LYS 185 1 A GLN 186 A GLN 186 11.14 A5KBP6_PLAVI UNP 1 102 A5KBP6 YDGVRIGQGYDIHQIRVGPPEDIVADTTADTAANTADPNKQSFKRLTIGGVPVETISVLSHSDGDVIFHALVDALLGGMS CSDLGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKISPIREEIVRNISSALGISESQVSLKGKT HEQLGPVGQKKAIECFANALLIRKQS 102 287 3B6N 2 187 A5KBP6 A 1 2 187 1 expression tag GLY 1 3B6N A A5KBP6 UNP 1 6 anti-parallel anti-parallel anti-parallel anti-parallel parallel A SER 43 A SER 43 A ILE 49 A ILE 49 A VAL 52 A VAL 52 A SER 61 A SER 61 A VAL 5 A VAL 5 A ARG 17 A ARG 17 A ALA 173 A ALA 173 A ARG 184 A ARG 184 A TYR 117 A TYR 117 A ILE 127 A ILE 127 A VAL 155 A VAL 155 A LYS 160 A LYS 160 BINDING SITE FOR RESIDUE ZN A 1157 A ZN 1157 Software 4 A ASP 12 A ASP 12 4 1_555 A HIS 14 A HIS 14 4 1_555 A HIS 62 A HIS 62 4 1_555 A HIS 70 A HIS 70 4 1_555 198 P 21 3