0.011050
0.000000
0.002168
0.000000
0.011579
0.000000
0.000000
0.000000
0.017931
0.000000
0.000000
0.000000
Pinko, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
101.100
90.000
90.494
86.363
56.833
C17 H22 N8 O
354.410
7-amino-2-tert-butyl-4-{[2-(1H-imidazol-4-yl)ethyl]amino}pyrido[2,3-d]pyrimidine-6-carboxamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H16 N2 O8 P 1
335.227
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
NICOTINAMIDE MONONUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
N
Y
2
N
C
Y
3
N
N
Y
4
N
C
N
5
N
C
N
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
N
10
N
C
N
11
N
C
N
12
N
C
N
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
N
N
20
N
N
N
21
N
C
N
22
N
O
N
23
N
N
N
24
N
N
Y
25
N
N
Y
26
N
N
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
O
N
313
N
P
N
314
N
O
N
315
N
O
N
316
N
O
N
317
N
C
N
318
R
C
N
319
N
O
N
320
S
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
R
C
Y
325
N
N
Y
326
N
C
Y
327
N
C
N
328
N
C
N
329
N
O
N
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
S
N
405
N
O
N
406
N
O
N
407
N
O
N
408
N
O
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
R
C
N
414
N
O
N
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
N
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
N
464
N
O
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
N
482
N
C
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
doub
Y
4
N
sing
Y
5
N
sing
Y
6
N
doub
Y
7
N
sing
Y
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
doub
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
Y
22
N
doub
Y
23
N
sing
Y
24
N
doub
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
sing
Y
204
N
doub
Y
205
N
doub
N
206
N
sing
Y
207
N
sing
N
208
N
sing
Y
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
doub
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
To be Published
0353
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
10.2210/pdb3baa/pdb
pdb_00003baa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
ROTATING ANODE
OTHER
38032.688
DNA ligase
6.5.1.2
Adenylation Domain
1
man
polymer
96.063
SULFATE ION
4
syn
non-polymer
335.227
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
1
syn
non-polymer
354.410
7-amino-2-tert-butyl-4-{[2-(1H-imidazol-4-yl)ethyl]amino}pyrido[2,3-d]pyrimidine-6-carboxamide
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
269
nat
water
no
no
MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKA
PHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV
PMRLTEPISVEVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ
FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPEE
AETVLEHHHHHH
MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKA
PHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV
PMRLTEPISVEVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ
FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPEE
AETVLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptococcus faecalis
sample
ligA
1351
Enterococcus faecalis
562
Escherichia coli
1
2.87
57.07
VAPOR DIFFUSION, HANGING DROP
VAPOR DIFFUSION, HANGING DROP
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-11-11
1
1
2011-07-13
1
2
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2007-11-07
REL
SO4
SULFATE ION
NMN
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
3BA
7-amino-2-tert-butyl-4-{[2-(1H-imidazol-4-yl)ethyl]amino}pyrido[2,3-d]pyrimidine-6-carboxamide
GOL
GLYCEROL
HOH
water
SO4
402
2
SO4
SO4
402
A
SO4
403
2
SO4
SO4
403
A
SO4
404
2
SO4
SO4
404
A
SO4
405
2
SO4
SO4
405
A
NMN
401
3
NMN
NMN
401
A
3BA
501
4
3BA
3BA
501
A
GOL
602
5
GOL
GOL
602
A
GOL
603
5
GOL
GOL
603
A
WAT
1
6
HOH
HOH
604
A
WAT
2
6
HOH
HOH
605
A
WAT
3
6
HOH
HOH
606
A
WAT
4
6
HOH
HOH
607
A
WAT
5
6
HOH
HOH
608
A
WAT
6
6
HOH
HOH
609
A
WAT
7
6
HOH
HOH
610
A
WAT
8
6
HOH
HOH
611
A
WAT
9
6
HOH
HOH
612
A
WAT
10
6
HOH
HOH
613
A
WAT
11
6
HOH
HOH
614
A
WAT
12
6
HOH
HOH
615
A
WAT
13
6
HOH
HOH
616
A
WAT
14
6
HOH
HOH
617
A
WAT
15
6
HOH
HOH
618
A
WAT
16
6
HOH
HOH
619
A
WAT
17
6
HOH
HOH
620
A
WAT
18
6
HOH
HOH
621
A
WAT
19
6
HOH
HOH
622
A
WAT
20
6
HOH
HOH
623
A
WAT
21
6
HOH
HOH
624
A
WAT
22
6
HOH
HOH
625
A
WAT
23
6
HOH
HOH
626
A
WAT
24
6
HOH
HOH
627
A
WAT
25
6
HOH
HOH
628
A
WAT
26
6
HOH
HOH
629
A
WAT
27
6
HOH
HOH
630
A
WAT
28
6
HOH
HOH
631
A
WAT
29
6
HOH
HOH
632
A
WAT
30
6
HOH
HOH
633
A
WAT
31
6
HOH
HOH
634
A
WAT
32
6
HOH
HOH
635
A
WAT
33
6
HOH
HOH
636
A
WAT
34
6
HOH
HOH
637
A
WAT
35
6
HOH
HOH
638
A
WAT
36
6
HOH
HOH
639
A
WAT
37
6
HOH
HOH
640
A
WAT
38
6
HOH
HOH
641
A
WAT
39
6
HOH
HOH
642
A
WAT
40
6
HOH
HOH
643
A
WAT
41
6
HOH
HOH
644
A
WAT
42
6
HOH
HOH
645
A
WAT
43
6
HOH
HOH
646
A
WAT
44
6
HOH
HOH
647
A
WAT
45
6
HOH
HOH
648
A
WAT
46
6
HOH
HOH
649
A
WAT
47
6
HOH
HOH
650
A
WAT
48
6
HOH
HOH
651
A
WAT
49
6
HOH
HOH
652
A
WAT
50
6
HOH
HOH
653
A
WAT
51
6
HOH
HOH
654
A
WAT
52
6
HOH
HOH
655
A
WAT
53
6
HOH
HOH
656
A
WAT
54
6
HOH
HOH
657
A
WAT
55
6
HOH
HOH
658
A
WAT
56
6
HOH
HOH
659
A
WAT
57
6
HOH
HOH
660
A
WAT
58
6
HOH
HOH
661
A
WAT
59
6
HOH
HOH
662
A
WAT
60
6
HOH
HOH
663
A
WAT
61
6
HOH
HOH
664
A
WAT
62
6
HOH
HOH
665
A
WAT
63
6
HOH
HOH
666
A
WAT
64
6
HOH
HOH
667
A
WAT
65
6
HOH
HOH
668
A
WAT
66
6
HOH
HOH
669
A
WAT
67
6
HOH
HOH
670
A
WAT
68
6
HOH
HOH
671
A
WAT
69
6
HOH
HOH
672
A
WAT
70
6
HOH
HOH
673
A
WAT
71
6
HOH
HOH
674
A
WAT
72
6
HOH
HOH
675
A
WAT
73
6
HOH
HOH
676
A
WAT
74
6
HOH
HOH
677
A
WAT
75
6
HOH
HOH
678
A
WAT
76
6
HOH
HOH
679
A
WAT
77
6
HOH
HOH
680
A
WAT
78
6
HOH
HOH
681
A
WAT
79
6
HOH
HOH
682
A
WAT
80
6
HOH
HOH
683
A
WAT
81
6
HOH
HOH
684
A
WAT
82
6
HOH
HOH
685
A
WAT
83
6
HOH
HOH
686
A
WAT
84
6
HOH
HOH
687
A
WAT
85
6
HOH
HOH
688
A
WAT
86
6
HOH
HOH
689
A
WAT
87
6
HOH
HOH
690
A
WAT
88
6
HOH
HOH
691
A
WAT
89
6
HOH
HOH
692
A
WAT
90
6
HOH
HOH
693
A
WAT
91
6
HOH
HOH
694
A
WAT
92
6
HOH
HOH
695
A
WAT
93
6
HOH
HOH
696
A
WAT
94
6
HOH
HOH
697
A
WAT
95
6
HOH
HOH
698
A
WAT
96
6
HOH
HOH
699
A
WAT
97
6
HOH
HOH
700
A
WAT
98
6
HOH
HOH
701
A
WAT
99
6
HOH
HOH
702
A
WAT
100
6
HOH
HOH
703
A
WAT
101
6
HOH
HOH
704
A
WAT
102
6
HOH
HOH
705
A
WAT
103
6
HOH
HOH
706
A
WAT
104
6
HOH
HOH
707
A
WAT
105
6
HOH
HOH
708
A
WAT
106
6
HOH
HOH
709
A
WAT
107
6
HOH
HOH
710
A
WAT
108
6
HOH
HOH
711
A
WAT
109
6
HOH
HOH
712
A
WAT
110
6
HOH
HOH
713
A
WAT
111
6
HOH
HOH
714
A
WAT
112
6
HOH
HOH
715
A
WAT
113
6
HOH
HOH
716
A
WAT
114
6
HOH
HOH
717
A
WAT
115
6
HOH
HOH
718
A
WAT
116
6
HOH
HOH
719
A
WAT
117
6
HOH
HOH
720
A
WAT
118
6
HOH
HOH
721
A
WAT
119
6
HOH
HOH
722
A
WAT
120
6
HOH
HOH
723
A
WAT
121
6
HOH
HOH
724
A
WAT
122
6
HOH
HOH
725
A
WAT
123
6
HOH
HOH
726
A
WAT
124
6
HOH
HOH
727
A
WAT
125
6
HOH
HOH
728
A
WAT
126
6
HOH
HOH
729
A
WAT
127
6
HOH
HOH
730
A
WAT
128
6
HOH
HOH
731
A
WAT
129
6
HOH
HOH
732
A
WAT
130
6
HOH
HOH
733
A
WAT
131
6
HOH
HOH
734
A
WAT
132
6
HOH
HOH
735
A
WAT
133
6
HOH
HOH
736
A
WAT
134
6
HOH
HOH
737
A
WAT
135
6
HOH
HOH
738
A
WAT
136
6
HOH
HOH
739
A
WAT
137
6
HOH
HOH
740
A
WAT
138
6
HOH
HOH
741
A
WAT
139
6
HOH
HOH
742
A
WAT
140
6
HOH
HOH
743
A
WAT
141
6
HOH
HOH
744
A
WAT
142
6
HOH
HOH
745
A
WAT
143
6
HOH
HOH
746
A
WAT
144
6
HOH
HOH
747
A
WAT
145
6
HOH
HOH
748
A
WAT
146
6
HOH
HOH
749
A
WAT
147
6
HOH
HOH
750
A
WAT
148
6
HOH
HOH
751
A
WAT
149
6
HOH
HOH
752
A
WAT
150
6
HOH
HOH
753
A
WAT
151
6
HOH
HOH
754
A
WAT
152
6
HOH
HOH
755
A
WAT
153
6
HOH
HOH
756
A
WAT
154
6
HOH
HOH
757
A
WAT
155
6
HOH
HOH
758
A
WAT
156
6
HOH
HOH
759
A
WAT
157
6
HOH
HOH
760
A
WAT
158
6
HOH
HOH
761
A
WAT
159
6
HOH
HOH
762
A
WAT
160
6
HOH
HOH
763
A
WAT
161
6
HOH
HOH
764
A
WAT
162
6
HOH
HOH
765
A
WAT
163
6
HOH
HOH
766
A
WAT
164
6
HOH
HOH
767
A
WAT
165
6
HOH
HOH
768
A
WAT
166
6
HOH
HOH
769
A
WAT
167
6
HOH
HOH
770
A
WAT
168
6
HOH
HOH
771
A
WAT
169
6
HOH
HOH
772
A
WAT
170
6
HOH
HOH
773
A
WAT
171
6
HOH
HOH
774
A
WAT
172
6
HOH
HOH
775
A
WAT
173
6
HOH
HOH
776
A
WAT
174
6
HOH
HOH
777
A
WAT
175
6
HOH
HOH
778
A
WAT
176
6
HOH
HOH
779
A
WAT
177
6
HOH
HOH
780
A
WAT
178
6
HOH
HOH
781
A
WAT
179
6
HOH
HOH
782
A
WAT
180
6
HOH
HOH
783
A
WAT
181
6
HOH
HOH
784
A
WAT
182
6
HOH
HOH
785
A
WAT
183
6
HOH
HOH
786
A
WAT
184
6
HOH
HOH
787
A
WAT
185
6
HOH
HOH
788
A
WAT
186
6
HOH
HOH
789
A
WAT
187
6
HOH
HOH
790
A
WAT
188
6
HOH
HOH
791
A
WAT
189
6
HOH
HOH
792
A
WAT
190
6
HOH
HOH
793
A
WAT
191
6
HOH
HOH
794
A
WAT
192
6
HOH
HOH
795
A
WAT
193
6
HOH
HOH
796
A
WAT
194
6
HOH
HOH
797
A
WAT
195
6
HOH
HOH
798
A
WAT
196
6
HOH
HOH
799
A
WAT
197
6
HOH
HOH
800
A
WAT
198
6
HOH
HOH
801
A
WAT
199
6
HOH
HOH
802
A
WAT
200
6
HOH
HOH
803
A
WAT
201
6
HOH
HOH
804
A
WAT
202
6
HOH
HOH
805
A
WAT
203
6
HOH
HOH
806
A
WAT
204
6
HOH
HOH
807
A
WAT
205
6
HOH
HOH
808
A
WAT
206
6
HOH
HOH
809
A
WAT
207
6
HOH
HOH
810
A
WAT
208
6
HOH
HOH
811
A
WAT
209
6
HOH
HOH
812
A
WAT
210
6
HOH
HOH
813
A
WAT
211
6
HOH
HOH
814
A
WAT
212
6
HOH
HOH
815
A
WAT
213
6
HOH
HOH
816
A
WAT
214
6
HOH
HOH
817
A
WAT
215
6
HOH
HOH
818
A
WAT
216
6
HOH
HOH
819
A
WAT
217
6
HOH
HOH
820
A
WAT
218
6
HOH
HOH
821
A
WAT
219
6
HOH
HOH
822
A
WAT
220
6
HOH
HOH
823
A
WAT
221
6
HOH
HOH
824
A
WAT
222
6
HOH
HOH
825
A
WAT
223
6
HOH
HOH
826
A
WAT
224
6
HOH
HOH
827
A
WAT
225
6
HOH
HOH
828
A
WAT
226
6
HOH
HOH
829
A
WAT
227
6
HOH
HOH
830
A
WAT
228
6
HOH
HOH
831
A
WAT
229
6
HOH
HOH
832
A
WAT
230
6
HOH
HOH
833
A
WAT
231
6
HOH
HOH
834
A
WAT
232
6
HOH
HOH
835
A
WAT
233
6
HOH
HOH
836
A
WAT
234
6
HOH
HOH
837
A
WAT
235
6
HOH
HOH
838
A
WAT
236
6
HOH
HOH
839
A
WAT
237
6
HOH
HOH
840
A
WAT
238
6
HOH
HOH
841
A
WAT
239
6
HOH
HOH
842
A
WAT
240
6
HOH
HOH
843
A
WAT
241
6
HOH
HOH
844
A
WAT
242
6
HOH
HOH
845
A
WAT
243
6
HOH
HOH
846
A
WAT
244
6
HOH
HOH
847
A
WAT
245
6
HOH
HOH
848
A
WAT
246
6
HOH
HOH
849
A
WAT
247
6
HOH
HOH
850
A
WAT
248
6
HOH
HOH
851
A
WAT
249
6
HOH
HOH
852
A
WAT
250
6
HOH
HOH
853
A
WAT
251
6
HOH
HOH
854
A
WAT
252
6
HOH
HOH
855
A
WAT
253
6
HOH
HOH
856
A
WAT
254
6
HOH
HOH
857
A
WAT
255
6
HOH
HOH
858
A
WAT
256
6
HOH
HOH
859
A
WAT
257
6
HOH
HOH
860
A
WAT
258
6
HOH
HOH
861
A
WAT
259
6
HOH
HOH
862
A
WAT
260
6
HOH
HOH
863
A
WAT
261
6
HOH
HOH
864
A
WAT
262
6
HOH
HOH
865
A
WAT
263
6
HOH
HOH
866
A
WAT
264
6
HOH
HOH
867
A
WAT
265
6
HOH
HOH
868
A
WAT
266
6
HOH
HOH
869
A
WAT
267
6
HOH
HOH
870
A
WAT
268
6
HOH
HOH
871
A
WAT
269
6
HOH
HOH
872
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
LEU
6
n
6
LEU
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
THR
12
n
12
THR
12
A
THR
13
n
13
THR
13
A
ARG
14
n
14
ARG
14
A
ALA
15
n
15
ALA
15
A
GLN
16
n
16
GLN
16
A
GLU
17
n
17
GLU
17
A
LEU
18
n
18
LEU
18
A
ARG
19
n
19
ARG
19
A
LYS
20
n
20
LYS
20
A
GLN
21
n
21
GLN
21
A
LEU
22
n
22
LEU
22
A
ASN
23
n
23
ASN
23
A
GLN
24
n
24
GLN
24
A
TYR
25
n
25
TYR
25
A
SER
26
n
26
SER
26
A
HIS
27
n
27
HIS
27
A
GLU
28
n
28
GLU
28
A
TYR
29
n
29
TYR
29
A
TYR
30
n
30
TYR
30
A
VAL
31
n
31
VAL
31
A
LYS
32
n
32
LYS
32
A
ASP
33
n
33
ASP
33
A
GLN
34
n
34
GLN
34
A
PRO
35
n
35
PRO
35
A
SER
36
n
36
SER
36
A
VAL
37
n
37
VAL
37
A
GLU
38
n
38
GLU
38
A
ASP
39
n
39
ASP
39
A
TYR
40
n
40
TYR
40
A
VAL
41
n
41
VAL
41
A
TYR
42
n
42
TYR
42
A
ASP
43
n
43
ASP
43
A
ARG
44
n
44
ARG
44
A
LEU
45
n
45
LEU
45
A
TYR
46
n
46
TYR
46
A
LYS
47
n
47
LYS
47
A
GLU
48
n
48
GLU
48
A
LEU
49
n
49
LEU
49
A
VAL
50
n
50
VAL
50
A
ASP
51
n
51
ASP
51
A
ILE
52
n
52
ILE
52
A
GLU
53
n
53
GLU
53
A
THR
54
n
54
THR
54
A
GLU
55
n
55
GLU
55
A
PHE
56
n
56
PHE
56
A
PRO
57
n
57
PRO
57
A
ASP
58
n
58
ASP
58
A
LEU
59
n
59
LEU
59
A
ILE
60
n
60
ILE
60
A
THR
61
n
61
THR
61
A
PRO
62
n
62
PRO
62
A
ASP
63
n
63
ASP
63
A
SER
64
n
64
SER
64
A
PRO
65
n
65
PRO
65
A
THR
66
n
66
THR
66
A
GLN
67
n
67
GLN
67
A
ARG
68
n
68
ARG
68
A
VAL
69
n
69
VAL
69
A
GLY
70
n
70
GLY
70
A
GLY
71
n
71
GLY
71
A
LYS
72
n
72
LYS
72
A
VAL
73
n
73
VAL
73
A
LEU
74
n
74
LEU
74
A
SER
75
n
75
SER
75
A
GLY
76
n
76
GLY
76
A
PHE
77
n
77
PHE
77
A
GLU
78
n
78
GLU
78
A
LYS
79
n
79
LYS
79
A
ALA
80
n
80
ALA
80
A
PRO
81
n
81
PRO
81
A
HIS
82
n
82
HIS
82
A
ASP
83
n
83
ASP
83
A
ILE
84
n
84
ILE
84
A
PRO
85
n
85
PRO
85
A
MET
86
n
86
MET
86
A
TYR
87
n
87
TYR
87
A
SER
88
n
88
SER
88
A
LEU
89
n
89
LEU
89
A
ASN
90
n
90
ASN
90
A
ASP
91
n
91
ASP
91
A
GLY
92
n
92
GLY
92
A
PHE
93
n
93
PHE
93
A
SER
94
n
94
SER
94
A
LYS
95
n
95
LYS
95
A
GLU
96
n
96
GLU
96
A
ASP
97
n
97
ASP
97
A
ILE
98
n
98
ILE
98
A
PHE
99
n
99
PHE
99
A
ALA
100
n
100
ALA
100
A
PHE
101
n
101
PHE
101
A
ASP
102
n
102
ASP
102
A
GLU
103
n
103
GLU
103
A
ARG
104
n
104
ARG
104
A
VAL
105
n
105
VAL
105
A
ARG
106
n
106
ARG
106
A
LYS
107
n
107
LYS
107
A
ALA
108
n
108
ALA
108
A
ILE
109
n
109
ILE
109
A
GLY
110
n
110
GLY
110
A
LYS
111
n
111
LYS
111
A
PRO
112
n
112
PRO
112
A
VAL
113
n
113
VAL
113
A
ALA
114
n
114
ALA
114
A
TYR
115
n
115
TYR
115
A
CYS
116
n
116
CYS
116
A
CYS
117
n
117
CYS
117
A
GLU
118
n
118
GLU
118
A
LEU
119
n
119
LEU
119
A
LYS
120
n
120
LYS
120
A
ILE
121
n
121
ILE
121
A
ASP
122
n
122
ASP
122
A
GLY
123
n
123
GLY
123
A
LEU
124
n
124
LEU
124
A
ALA
125
n
125
ALA
125
A
ILE
126
n
126
ILE
126
A
SER
127
n
127
SER
127
A
LEU
128
n
128
LEU
128
A
ARG
129
n
129
ARG
129
A
TYR
130
n
130
TYR
130
A
GLU
131
n
131
GLU
131
A
ASN
132
n
132
ASN
132
A
GLY
133
n
133
GLY
133
A
VAL
134
n
134
VAL
134
A
PHE
135
n
135
PHE
135
A
VAL
136
n
136
VAL
136
A
ARG
137
n
137
ARG
137
A
GLY
138
n
138
GLY
138
A
ALA
139
n
139
ALA
139
A
THR
140
n
140
THR
140
A
ARG
141
n
141
ARG
141
A
GLY
142
n
142
GLY
142
A
ASP
143
n
143
ASP
143
A
GLY
144
n
144
GLY
144
A
THR
145
n
145
THR
145
A
VAL
146
n
146
VAL
146
A
GLY
147
n
147
GLY
147
A
GLU
148
n
148
GLU
148
A
ASN
149
n
149
ASN
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
GLU
152
n
152
GLU
152
A
ASN
153
n
153
ASN
153
A
LEU
154
n
154
LEU
154
A
ARG
155
n
155
ARG
155
A
THR
156
n
156
THR
156
A
VAL
157
n
157
VAL
157
A
ARG
158
n
158
ARG
158
A
SER
159
n
159
SER
159
A
VAL
160
n
160
VAL
160
A
PRO
161
n
161
PRO
161
A
MET
162
n
162
MET
162
A
ARG
163
n
163
ARG
163
A
LEU
164
n
164
LEU
164
A
THR
165
n
165
THR
165
A
GLU
166
n
166
GLU
166
A
PRO
167
n
167
PRO
167
A
ILE
168
n
168
ILE
168
A
SER
169
n
169
SER
169
A
VAL
170
n
170
VAL
170
A
GLU
171
n
171
GLU
171
A
VAL
172
n
172
VAL
172
A
ARG
173
n
173
ARG
173
A
GLY
174
n
174
GLY
174
A
GLU
175
n
175
GLU
175
A
CYS
176
n
176
CYS
176
A
TYR
177
n
177
TYR
177
A
MET
178
n
178
MET
178
A
PRO
179
n
179
PRO
179
A
LYS
180
n
180
LYS
180
A
GLN
181
n
181
GLN
181
A
SER
182
n
182
SER
182
A
PHE
183
n
183
PHE
183
A
VAL
184
n
184
VAL
184
A
ALA
185
n
185
ALA
185
A
LEU
186
n
186
LEU
186
A
ASN
187
n
187
ASN
187
A
GLU
188
n
188
GLU
188
A
GLU
189
n
189
GLU
189
A
ARG
190
n
190
ARG
190
A
GLU
191
n
191
GLU
191
A
GLU
192
n
192
GLU
192
A
ASN
193
n
193
ASN
193
A
GLY
194
n
194
GLY
194
A
GLN
195
n
195
GLN
195
A
ASP
196
n
196
ASP
196
A
ILE
197
n
197
ILE
197
A
PHE
198
n
198
PHE
198
A
ALA
199
n
199
ALA
199
A
ASN
200
n
200
ASN
200
A
PRO
201
n
201
PRO
201
A
ARG
202
n
202
ARG
202
A
ASN
203
n
203
ASN
203
A
ALA
204
n
204
ALA
204
A
ALA
205
n
205
ALA
205
A
ALA
206
n
206
ALA
206
A
GLY
207
n
207
GLY
207
A
SER
208
n
208
SER
208
A
LEU
209
n
209
LEU
209
A
ARG
210
n
210
ARG
210
A
GLN
211
n
211
GLN
211
A
LEU
212
n
212
LEU
212
A
ASP
213
n
213
ASP
213
A
THR
214
n
214
THR
214
A
LYS
215
n
215
LYS
215
A
ILE
216
n
216
ILE
216
A
VAL
217
n
217
VAL
217
A
ALA
218
n
218
ALA
218
A
LYS
219
n
219
LYS
219
A
ARG
220
n
220
ARG
220
A
ASN
221
n
221
ASN
221
A
LEU
222
n
222
LEU
222
A
ASN
223
n
223
ASN
223
A
THR
224
n
224
THR
224
A
PHE
225
n
225
PHE
225
A
LEU
226
n
226
LEU
226
A
TYR
227
n
227
TYR
227
A
THR
228
n
228
THR
228
A
VAL
229
n
229
VAL
229
A
ALA
230
n
230
ALA
230
A
ASP
231
n
231
ASP
231
A
PHE
232
n
232
PHE
232
A
GLY
233
n
233
GLY
233
A
PRO
234
n
234
PRO
234
A
MET
235
n
235
MET
235
A
LYS
236
n
236
LYS
236
A
ALA
237
n
237
ALA
237
A
LYS
238
n
238
LYS
238
A
THR
239
n
239
THR
239
A
GLN
240
n
240
GLN
240
A
PHE
241
n
241
PHE
241
A
GLU
242
n
242
GLU
242
A
ALA
243
n
243
ALA
243
A
LEU
244
n
244
LEU
244
A
GLU
245
n
245
GLU
245
A
GLU
246
n
246
GLU
246
A
LEU
247
n
247
LEU
247
A
SER
248
n
248
SER
248
A
ALA
249
n
249
ALA
249
A
ILE
250
n
250
ILE
250
A
GLY
251
n
251
GLY
251
A
PHE
252
n
252
PHE
252
A
ARG
253
n
253
ARG
253
A
THR
254
n
254
THR
254
A
ASN
255
n
255
ASN
255
A
PRO
256
n
256
PRO
256
A
GLU
257
n
257
GLU
257
A
ARG
258
n
258
ARG
258
A
GLN
259
n
259
GLN
259
A
LEU
260
n
260
LEU
260
A
CYS
261
n
261
CYS
261
A
GLN
262
n
262
GLN
262
A
SER
263
n
263
SER
263
A
ILE
264
n
264
ILE
264
A
ASP
265
n
265
ASP
265
A
GLU
266
n
266
GLU
266
A
VAL
267
n
267
VAL
267
A
TRP
268
n
268
TRP
268
A
ALA
269
n
269
ALA
269
A
TYR
270
n
270
TYR
270
A
ILE
271
n
271
ILE
271
A
GLU
272
n
272
GLU
272
A
GLU
273
n
273
GLU
273
A
TYR
274
n
274
TYR
274
A
HIS
275
n
275
HIS
275
A
GLU
276
n
276
GLU
276
A
LYS
277
n
277
LYS
277
A
ARG
278
n
278
ARG
278
A
SER
279
n
279
SER
279
A
THR
280
n
280
THR
280
A
LEU
281
n
281
LEU
281
A
PRO
282
n
282
PRO
282
A
TYR
283
n
283
TYR
283
A
GLU
284
n
284
GLU
284
A
ILE
285
n
285
ILE
285
A
ASP
286
n
286
ASP
286
A
GLY
287
n
287
GLY
287
A
ILE
288
n
288
ILE
288
A
VAL
289
n
289
VAL
289
A
ILE
290
n
290
ILE
290
A
LYS
291
n
291
LYS
291
A
VAL
292
n
292
VAL
292
A
ASN
293
n
293
ASN
293
A
GLU
294
n
294
GLU
294
A
PHE
295
n
295
PHE
295
A
ALA
296
n
296
ALA
296
A
LEU
297
n
297
LEU
297
A
GLN
298
n
298
GLN
298
A
ASP
299
n
299
ASP
299
A
GLU
300
n
300
GLU
300
A
LEU
301
n
301
LEU
301
A
GLY
302
n
302
GLY
302
A
PHE
303
n
303
PHE
303
A
THR
304
n
304
THR
304
A
VAL
305
n
305
VAL
305
A
LYS
306
n
306
LYS
306
A
ALA
307
n
307
ALA
307
A
PRO
308
n
308
PRO
308
A
ARG
309
n
309
ARG
309
A
TRP
310
n
310
TRP
310
A
ALA
311
n
311
ALA
311
A
ILE
312
n
312
ILE
312
A
ALA
313
n
313
ALA
313
A
TYR
314
n
314
TYR
314
A
LYS
315
n
315
LYS
315
A
PHE
316
n
316
PHE
316
A
PRO
317
n
317
PRO
317
A
n
318
318
A
n
319
319
A
n
320
320
A
n
321
321
A
n
322
322
A
n
323
323
A
n
324
324
A
n
325
325
A
n
326
326
A
n
327
327
A
n
328
328
A
n
329
329
A
n
330
330
A
n
331
331
A
n
332
332
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
80
A
N
ALA
80
A
O
GLY
147
A
O
GLY
147
A
N
GLY
92
A
N
GLY
92
A
O
LYS
315
A
O
LYS
315
A
O
ILE
312
A
O
ILE
312
A
N
ILE
290
A
N
ILE
290
A
O
VAL
289
A
O
VAL
289
A
N
GLU
118
A
N
GLU
118
A
N
TYR
115
A
N
TYR
115
A
O
CYS
261
A
O
CYS
261
A
O
ARG
137
A
O
ARG
137
A
N
ARG
129
A
N
ARG
129
A
N
LEU
128
A
N
LEU
128
A
O
VAL
172
A
O
VAL
172
A
N
TYR
177
A
N
TYR
177
A
O
ASN
223
A
O
ASN
223
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
GLN
3
A
GLN
3
1
Y
1
A
GLN
4
A
GLN
4
1
Y
1
A
PRO
5
A
PRO
5
1
Y
1
A
PRO
318
A
PRO
318
1
Y
1
A
GLU
319
A
GLU
319
1
Y
1
A
GLU
320
A
GLU
320
1
Y
1
A
ALA
321
A
ALA
321
1
Y
1
A
GLU
322
A
GLU
322
1
Y
1
A
THR
323
A
THR
323
1
Y
1
A
VAL
324
A
VAL
324
1
Y
1
A
LEU
325
A
LEU
325
1
Y
1
A
GLU
326
A
GLU
326
1
Y
1
A
HIS
327
A
HIS
327
1
Y
1
A
HIS
328
A
HIS
328
1
Y
1
A
HIS
329
A
HIS
329
1
Y
1
A
HIS
330
A
HIS
330
1
Y
1
A
HIS
331
A
HIS
331
1
Y
1
A
HIS
332
A
HIS
332
1
Y
1
A
GLN
34
-153.57
82.04
protein_rep.param
protein.top
water_rep.param
so4.param
nmn.param
3348.param
22.100
-1.350
0.000
-0.880
5.830
0.000
-4.480
0.216
0.004
0.187
1.900
24.240
3323
33094
10.000
97.900
RANDOM
704911.125
0.000
1
RESTRAINED
THROUGHOUT
0.00
FLAT MODEL
48.814
0.431
0.230
0.200
5.000
0.150
0.100
1.900
24.240
269
2855
80
0
2506
0.006
1.300
22.000
0.850
1.170
1.500
1.750
2.000
2.080
2.000
3.140
2.500
0.242
0.011
0.209
2.020
528
4691
5219
6
10.100
92.900
12.700
1.9
24.240
3BAA
33094
1
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
refinement
CNX
2000.1
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
A
THR
7
A
THR
7
HELX_P
A
VAL
31
A
VAL
31
1
1
25
A
GLU
38
A
GLU
38
HELX_P
A
PHE
56
A
PHE
56
1
2
19
A
PRO
57
A
PRO
57
HELX_P
A
ILE
60
A
ILE
60
5
3
4
A
SER
64
A
SER
64
HELX_P
A
GLY
70
A
GLY
70
5
4
7
A
SER
94
A
SER
94
HELX_P
A
GLY
110
A
GLY
110
1
5
17
A
ILE
150
A
ILE
150
HELX_P
A
ARG
155
A
ARG
155
1
6
6
A
PRO
179
A
PRO
179
HELX_P
A
ASN
193
A
ASN
193
1
7
15
A
ASN
200
A
ASN
200
HELX_P
A
LEU
209
A
LEU
209
1
8
10
A
ASP
213
A
ASP
213
HELX_P
A
ALA
218
A
ALA
218
1
9
6
A
THR
239
A
THR
239
HELX_P
A
GLY
251
A
GLY
251
1
10
13
A
SER
263
A
SER
263
HELX_P
A
ARG
278
A
ARG
278
1
11
16
A
SER
279
A
SER
279
HELX_P
A
LEU
281
A
LEU
281
5
12
3
A
GLU
294
A
GLU
294
HELX_P
A
GLY
302
A
GLY
302
1
13
9
LIGASE
Adenylation Domain, DNA damage, DNA repair, DNA replication, Ligase, NAD
Q837V6_ENTFA
UNP
1
1
Q837V6
MEQQPLTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKA
PHDIPMYSLNDGFSKEDIFAFDERVRKAIGKPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSV
PMRLTEPISVEVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQ
FEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPEE
AETV
1
324
3BAA
1
324
Q837V6
A
1
1
324
1
expression tag
LEU
325
3BAA
A
Q837V6
UNP
325
1
expression tag
GLU
326
3BAA
A
Q837V6
UNP
326
1
expression tag
HIS
327
3BAA
A
Q837V6
UNP
327
1
expression tag
HIS
328
3BAA
A
Q837V6
UNP
328
1
expression tag
HIS
329
3BAA
A
Q837V6
UNP
329
1
expression tag
HIS
330
3BAA
A
Q837V6
UNP
330
1
expression tag
HIS
331
3BAA
A
Q837V6
UNP
331
1
expression tag
HIS
332
3BAA
A
Q837V6
UNP
332
2
5
4
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
79
A
LYS
79
A
PRO
81
A
PRO
81
A
VAL
146
A
VAL
146
A
GLU
148
A
GLU
148
A
ASP
91
A
ASP
91
A
GLY
92
A
GLY
92
A
ALA
311
A
ALA
311
A
LYS
315
A
LYS
315
A
ILE
285
A
ILE
285
A
VAL
292
A
VAL
292
A
TYR
115
A
TYR
115
A
ILE
121
A
ILE
121
A
GLN
259
A
GLN
259
A
CYS
261
A
CYS
261
A
VAL
134
A
VAL
134
A
THR
140
A
THR
140
A
LEU
124
A
LEU
124
A
GLU
131
A
GLU
131
A
VAL
170
A
VAL
170
A
TYR
177
A
TYR
177
A
ASN
223
A
ASN
223
A
VAL
229
A
VAL
229
BINDING SITE FOR RESIDUE SO4 A 402
A
SO4
402
Software
5
BINDING SITE FOR RESIDUE SO4 A 403
A
SO4
403
Software
5
BINDING SITE FOR RESIDUE SO4 A 404
A
SO4
404
Software
6
BINDING SITE FOR RESIDUE SO4 A 405
A
SO4
405
Software
3
BINDING SITE FOR RESIDUE NMN A 401
A
NMN
401
Software
13
BINDING SITE FOR RESIDUE 3BA A 501
A
3BA
501
Software
13
BINDING SITE FOR RESIDUE GOL A 602
A
GOL
602
Software
5
BINDING SITE FOR RESIDUE GOL A 603
A
GOL
603
Software
7
A
LYS
120
A
LYS
120
5
1_555
A
GLU
175
A
GLU
175
5
1_555
A
3BA
501
G
3BA
5
1_555
A
HOH
802
J
HOH
5
1_555
A
HOH
840
J
HOH
5
1_555
A
PRO
81
A
PRO
81
5
1_555
A
ARG
129
A
ARG
129
5
1_555
A
ARG
137
A
ARG
137
5
1_555
A
HOH
647
J
HOH
5
1_555
A
HOH
832
J
HOH
5
1_555
A
ARG
190
A
ARG
190
6
1_555
A
GLN
195
A
GLN
195
6
1_555
A
GLN
211
A
GLN
211
6
1_555
A
ARG
220
A
ARG
220
6
1_555
A
HOH
792
J
HOH
6
1_555
A
HOH
863
J
HOH
6
1_555
A
GLN
24
A
GLN
24
3
1_555
A
HIS
27
A
HIS
27
3
1_555
A
LYS
32
A
LYS
32
3
1_555
A
TYR
25
A
TYR
25
13
1_555
A
TYR
29
A
TYR
29
13
1_555
A
TYR
30
A
TYR
30
13
1_555
A
VAL
37
A
VAL
37
13
1_555
A
ASP
39
A
ASP
39
13
1_555
A
TYR
42
A
TYR
42
13
1_555
A
ASP
43
A
ASP
43
13
1_555
A
ARG
158
A
ARG
158
13
1_555
A
HOH
622
J
HOH
13
1_555
A
HOH
658
J
HOH
13
1_555
A
HOH
703
J
HOH
13
1_555
A
HOH
734
J
HOH
13
1_555
A
HOH
785
J
HOH
13
1_555
A
TYR
87
A
TYR
87
13
1_555
A
LEU
89
A
LEU
89
13
1_555
A
GLU
118
A
GLU
118
13
1_555
A
LEU
119
A
LEU
119
13
1_555
A
LYS
120
A
LYS
120
13
1_555
A
ILE
121
A
ILE
121
13
1_555
A
GLU
175
A
GLU
175
13
1_555
A
TYR
227
A
TYR
227
13
1_555
A
VAL
289
A
VAL
289
13
1_555
A
LYS
291
A
LYS
291
13
1_555
A
TRP
310
A
TRP
310
13
1_555
A
SO4
402
B
SO4
13
1_555
A
GOL
603
I
GOL
13
1_555
A
PHE
101
A
PHE
101
5
1_555
A
ARG
104
A
ARG
104
5
1_555
A
ARG
309
A
ARG
309
5
1_555
A
HOH
684
J
HOH
5
1_555
A
HOH
806
J
HOH
5
2_657
A
PRO
85
A
PRO
85
7
1_555
A
MET
86
A
MET
86
7
1_555
A
TYR
87
A
TYR
87
7
1_555
A
ARG
173
A
ARG
173
7
1_555
A
PHE
303
A
PHE
303
7
1_555
A
3BA
501
G
3BA
7
1_555
A
HOH
872
J
HOH
7
1_555
5
C 1 2 1