0.006560
0.000000
0.000000
0.000000
0.006560
0.000000
0.000000
0.000000
0.006560
0.00000
0.00000
0.00000
Palani, K.
Kumaran, D.
0000-0002-2487-9713
Burley, S.K.
Swaminathan, S.
New York SGX Research Center for Structural Genomics (NYSGXRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
152.434
152.434
152.434
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal structure of a putative glycosyltransferase from Bacteroides fragilis.
0000-0002-2487-9713
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
CCD
2007-10-23
ADSC QUANTUM 315
Si(III)
SINGLE WAVELENGTH
M
x-ray
1
0.97900
1.0
X29A
NSLS
0.97900
SYNCHROTRON
NSLS BEAMLINE X29A
27544.617
Putative glycosyltransferase protein
Residues 2-230
2
man
polymer
18.015
water
104
nat
water
no
yes
(MSE)SLIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG
(MSE)ACNSGLDVATGEYVAFCDSDDYVDSD(MSE)Y(MSE)T(MSE)YNVAQKYTCDAVFTGLKRIT(MSE)AGIPTGT
VTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERILPSEDLIFNVDVLANSNI
VCVLPQTFYNYRTNPISISEGHHHHHH
MSLIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGL
DVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASD
PYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQTFYNYRTNPISISEGHHHHHH
A,B
NYSGXRC-12059a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacteroides
Bacteroides fragilis
NCTC 9343
Escherichia
Escherichia coli
sample
25285
BF2801
272559
Bacteroides fragilis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
BC-pSGX3(BC)
1
2.70
54.40
VAPOR DIFFUSION, SITTING DROP
4.6
0.1M Sodium acetate trihydrate, 0.2M Ammonium sulfate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
298.0
New York SGX Research Center for Structural Genomics
NYSGXRC
PSI, Protein Structure Initiative
audit_author
citation_author
struct_conn
struct_ref_seq_dif
repository
Initial release
Source and taxonomy
Version format compliance
Database references
Derived calculations
Structure summary
1
0
2007-11-27
1
1
2011-07-13
1
2
2021-02-03
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2007-11-13
REL
REL
HOH
water
TIP
5
2
HOH
HOH
242
A
TIP
6
2
HOH
HOH
243
A
TIP
12
2
HOH
HOH
244
A
TIP
17
2
HOH
HOH
245
A
TIP
18
2
HOH
HOH
246
A
TIP
19
2
HOH
HOH
247
A
TIP
23
2
HOH
HOH
248
A
TIP
25
2
HOH
HOH
249
A
TIP
28
2
HOH
HOH
250
A
TIP
29
2
HOH
HOH
251
A
TIP
32
2
HOH
HOH
252
A
TIP
37
2
HOH
HOH
253
A
TIP
44
2
HOH
HOH
254
A
TIP
45
2
HOH
HOH
255
A
TIP
48
2
HOH
HOH
256
A
TIP
51
2
HOH
HOH
257
A
TIP
52
2
HOH
HOH
258
A
TIP
56
2
HOH
HOH
259
A
TIP
59
2
HOH
HOH
260
A
TIP
62
2
HOH
HOH
261
A
TIP
63
2
HOH
HOH
262
A
TIP
64
2
HOH
HOH
263
A
TIP
67
2
HOH
HOH
264
A
TIP
68
2
HOH
HOH
265
A
TIP
73
2
HOH
HOH
266
A
TIP
76
2
HOH
HOH
267
A
TIP
77
2
HOH
HOH
268
A
TIP
78
2
HOH
HOH
269
A
TIP
81
2
HOH
HOH
270
A
TIP
82
2
HOH
HOH
271
A
TIP
84
2
HOH
HOH
272
A
TIP
85
2
HOH
HOH
273
A
TIP
86
2
HOH
HOH
274
A
TIP
88
2
HOH
HOH
275
A
TIP
91
2
HOH
HOH
276
A
TIP
96
2
HOH
HOH
277
A
TIP
98
2
HOH
HOH
278
A
TIP
99
2
HOH
HOH
279
A
TIP
100
2
HOH
HOH
280
A
TIP
101
2
HOH
HOH
281
A
TIP
102
2
HOH
HOH
282
A
TIP
104
2
HOH
HOH
283
A
TIP
1
2
HOH
HOH
241
B
TIP
2
2
HOH
HOH
242
B
TIP
3
2
HOH
HOH
243
B
TIP
4
2
HOH
HOH
244
B
TIP
7
2
HOH
HOH
245
B
TIP
8
2
HOH
HOH
246
B
TIP
9
2
HOH
HOH
247
B
TIP
10
2
HOH
HOH
248
B
TIP
11
2
HOH
HOH
249
B
TIP
13
2
HOH
HOH
250
B
TIP
14
2
HOH
HOH
251
B
TIP
15
2
HOH
HOH
252
B
TIP
16
2
HOH
HOH
253
B
TIP
20
2
HOH
HOH
254
B
TIP
21
2
HOH
HOH
255
B
TIP
22
2
HOH
HOH
256
B
TIP
24
2
HOH
HOH
257
B
TIP
26
2
HOH
HOH
258
B
TIP
27
2
HOH
HOH
259
B
TIP
30
2
HOH
HOH
260
B
TIP
31
2
HOH
HOH
261
B
TIP
33
2
HOH
HOH
262
B
TIP
34
2
HOH
HOH
263
B
TIP
35
2
HOH
HOH
264
B
TIP
36
2
HOH
HOH
265
B
TIP
38
2
HOH
HOH
266
B
TIP
39
2
HOH
HOH
267
B
TIP
40
2
HOH
HOH
268
B
TIP
41
2
HOH
HOH
269
B
TIP
42
2
HOH
HOH
270
B
TIP
43
2
HOH
HOH
271
B
TIP
46
2
HOH
HOH
272
B
TIP
47
2
HOH
HOH
273
B
TIP
49
2
HOH
HOH
274
B
TIP
50
2
HOH
HOH
275
B
TIP
53
2
HOH
HOH
276
B
TIP
54
2
HOH
HOH
277
B
TIP
55
2
HOH
HOH
278
B
TIP
57
2
HOH
HOH
279
B
TIP
58
2
HOH
HOH
280
B
TIP
60
2
HOH
HOH
281
B
TIP
61
2
HOH
HOH
282
B
TIP
65
2
HOH
HOH
283
B
TIP
66
2
HOH
HOH
284
B
TIP
69
2
HOH
HOH
285
B
TIP
70
2
HOH
HOH
286
B
TIP
71
2
HOH
HOH
287
B
TIP
72
2
HOH
HOH
288
B
TIP
74
2
HOH
HOH
289
B
TIP
75
2
HOH
HOH
290
B
TIP
79
2
HOH
HOH
291
B
TIP
80
2
HOH
HOH
292
B
TIP
83
2
HOH
HOH
293
B
TIP
87
2
HOH
HOH
294
B
TIP
89
2
HOH
HOH
295
B
TIP
90
2
HOH
HOH
296
B
TIP
92
2
HOH
HOH
297
B
TIP
93
2
HOH
HOH
298
B
TIP
94
2
HOH
HOH
299
B
TIP
95
2
HOH
HOH
300
B
TIP
97
2
HOH
HOH
301
B
TIP
103
2
HOH
HOH
302
B
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
ILE
4
n
4
ILE
4
A
PRO
5
n
5
PRO
5
A
LYS
6
n
6
LYS
6
A
VAL
7
n
7
VAL
7
A
SER
8
n
8
SER
8
A
VAL
9
n
9
VAL
9
A
ILE
10
n
10
ILE
10
A
VAL
11
n
11
VAL
11
A
PRO
12
n
12
PRO
12
A
ILE
13
n
13
ILE
13
A
TYR
14
n
14
TYR
14
A
ASN
15
n
15
ASN
15
A
VAL
16
n
16
VAL
16
A
GLU
17
n
17
GLU
17
A
LYS
18
n
18
LYS
18
A
TYR
19
n
19
TYR
19
A
LEU
20
n
20
LEU
20
A
ASP
21
n
21
ASP
21
A
GLN
22
n
22
GLN
22
A
CYS
23
n
23
CYS
23
A
VAL
24
n
24
VAL
24
A
GLN
25
n
25
GLN
25
A
ALA
26
n
26
ALA
26
A
LEU
27
n
27
LEU
27
A
LEU
28
n
28
LEU
28
A
ALA
29
n
29
ALA
29
A
GLN
30
n
30
GLN
30
A
THR
31
n
31
THR
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
ASP
34
n
34
ASP
34
A
ILE
35
n
35
ILE
35
A
GLU
36
n
36
GLU
36
A
ILE
37
n
37
ILE
37
A
ILE
38
n
38
ILE
38
A
LEU
39
n
39
LEU
39
A
ILE
40
n
40
ILE
40
A
ASP
41
n
41
ASP
41
A
ASP
42
n
42
ASP
42
A
GLU
43
n
43
GLU
43
A
SER
44
n
44
SER
44
A
PRO
45
n
45
PRO
45
A
ASP
46
n
46
ASP
46
A
ASN
47
n
47
ASN
47
A
CYS
48
n
48
CYS
48
A
PRO
49
n
49
PRO
49
A
LYS
50
n
50
LYS
50
A
ILE
51
n
51
ILE
51
A
CYS
52
n
52
CYS
52
A
ASP
53
n
53
ASP
53
A
ASP
54
n
54
ASP
54
A
TYR
55
n
55
TYR
55
A
ALA
56
n
56
ALA
56
A
ALA
57
n
57
ALA
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
PRO
60
n
60
PRO
60
A
ASN
61
n
61
ASN
61
A
ILE
62
n
62
ILE
62
A
LYS
63
n
63
LYS
63
A
VAL
64
n
64
VAL
64
A
ILE
65
n
65
ILE
65
A
HIS
66
n
66
HIS
66
A
LYS
67
n
67
LYS
67
A
LYS
68
n
68
LYS
68
A
ASN
69
n
69
ASN
69
A
ALA
70
n
70
ALA
70
A
GLY
71
n
71
GLY
71
A
LEU
72
n
72
LEU
72
A
GLY
73
n
73
GLY
73
A
MSE
74
n
74
MSE
74
A
ALA
75
n
75
ALA
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
SER
78
n
78
SER
78
A
GLY
79
n
79
GLY
79
A
LEU
80
n
80
LEU
80
A
ASP
81
n
81
ASP
81
A
VAL
82
n
82
VAL
82
A
ALA
83
n
83
ALA
83
A
THR
84
n
84
THR
84
A
GLY
85
n
85
GLY
85
A
GLU
86
n
86
GLU
86
A
TYR
87
n
87
TYR
87
A
VAL
88
n
88
VAL
88
A
ALA
89
n
89
ALA
89
A
PHE
90
n
90
PHE
90
A
CYS
91
n
91
CYS
91
A
ASP
92
n
92
ASP
92
A
SER
93
n
93
SER
93
A
ASP
94
n
94
ASP
94
A
ASP
95
n
95
ASP
95
A
TYR
96
n
96
TYR
96
A
VAL
97
n
97
VAL
97
A
ASP
98
n
98
ASP
98
A
SER
99
n
99
SER
99
A
ASP
100
n
100
ASP
100
A
MSE
101
n
101
MSE
101
A
TYR
102
n
102
TYR
102
A
MSE
103
n
103
MSE
103
A
THR
104
n
104
THR
104
A
MSE
105
n
105
MSE
105
A
TYR
106
n
106
TYR
106
A
ASN
107
n
107
ASN
107
A
VAL
108
n
108
VAL
108
A
ALA
109
n
109
ALA
109
A
GLN
110
n
110
GLN
110
A
LYS
111
n
111
LYS
111
A
TYR
112
n
112
TYR
112
A
THR
113
n
113
THR
113
A
CYS
114
n
114
CYS
114
A
ASP
115
n
115
ASP
115
A
ALA
116
n
116
ALA
116
A
VAL
117
n
117
VAL
117
A
PHE
118
n
118
PHE
118
A
THR
119
n
119
THR
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
n
124
124
A
n
125
125
A
n
126
126
A
n
127
127
A
n
128
128
A
n
129
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
PHE
140
n
140
PHE
140
A
LYS
141
n
141
LYS
141
A
LEU
142
n
142
LEU
142
A
TYR
143
n
143
TYR
143
A
LYS
144
n
144
LYS
144
A
ASN
145
n
145
ASN
145
A
LYS
146
n
146
LYS
146
A
ASN
147
n
147
ASN
147
A
GLU
148
n
148
GLU
148
A
ILE
149
n
149
ILE
149
A
HIS
150
n
150
HIS
150
A
THR
151
n
151
THR
151
A
LEU
152
n
152
LEU
152
A
LEU
153
n
153
LEU
153
A
LYS
154
n
154
LYS
154
A
ASP
155
n
155
ASP
155
A
LEU
156
n
156
LEU
156
A
ILE
157
n
157
ILE
157
A
ALA
158
n
158
ALA
158
A
SER
159
n
159
SER
159
A
ASP
160
n
160
ASP
160
A
PRO
161
n
161
PRO
161
A
TYR
162
n
162
TYR
162
A
ALA
163
n
163
ALA
163
A
ARG
164
n
164
ARG
164
A
GLU
165
n
165
GLU
165
A
GLU
166
n
166
GLU
166
A
ARG
167
n
167
ARG
167
A
ALA
168
n
168
ALA
168
A
ILE
169
n
169
ILE
169
A
GLN
170
n
170
GLN
170
A
VAL
171
n
171
VAL
171
A
SER
172
n
172
SER
172
A
ALA
173
n
173
ALA
173
A
LYS
174
n
174
LYS
174
A
VAL
175
n
175
VAL
175
A
VAL
176
n
176
VAL
176
A
LEU
177
n
177
LEU
177
A
TYR
178
n
178
TYR
178
A
ARG
179
n
179
ARG
179
A
ARG
180
n
180
ARG
180
A
ASN
181
n
181
ASN
181
A
LEU
182
n
182
LEU
182
A
ILE
183
n
183
ILE
183
A
GLU
184
n
184
GLU
184
A
LYS
185
n
185
LYS
185
A
LYS
186
n
186
LYS
186
A
HIS
187
n
187
HIS
187
A
LEU
188
n
188
LEU
188
A
ARG
189
n
189
ARG
189
A
PHE
190
n
190
PHE
190
A
VAL
191
n
191
VAL
191
A
SER
192
n
192
SER
192
A
GLU
193
n
193
GLU
193
A
ARG
194
n
194
ARG
194
A
ILE
195
n
195
ILE
195
A
LEU
196
n
196
LEU
196
A
PRO
197
n
197
PRO
197
A
SER
198
n
198
SER
198
A
GLU
199
n
199
GLU
199
A
ASP
200
n
200
ASP
200
A
LEU
201
n
201
LEU
201
A
ILE
202
n
202
ILE
202
A
PHE
203
n
203
PHE
203
A
ASN
204
n
204
ASN
204
A
VAL
205
n
205
VAL
205
A
ASP
206
n
206
ASP
206
A
VAL
207
n
207
VAL
207
A
LEU
208
n
208
LEU
208
A
ALA
209
n
209
ALA
209
A
ASN
210
n
210
ASN
210
A
SER
211
n
211
SER
211
A
ASN
212
n
212
ASN
212
A
ILE
213
n
213
ILE
213
A
VAL
214
n
214
VAL
214
A
CYS
215
n
215
CYS
215
A
VAL
216
n
216
VAL
216
A
LEU
217
n
217
LEU
217
A
PRO
218
n
218
PRO
218
A
n
219
219
A
n
220
220
A
n
221
221
A
n
222
222
A
n
223
223
A
n
224
224
A
n
225
225
A
n
226
226
A
n
227
227
A
n
228
228
A
n
229
229
A
n
230
230
A
n
231
231
A
n
232
232
A
n
233
233
A
n
234
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
n
240
240
A
n
1
1
B
n
2
2
B
LEU
3
n
3
LEU
3
B
ILE
4
n
4
ILE
4
B
PRO
5
n
5
PRO
5
B
LYS
6
n
6
LYS
6
B
VAL
7
n
7
VAL
7
B
SER
8
n
8
SER
8
B
VAL
9
n
9
VAL
9
B
ILE
10
n
10
ILE
10
B
VAL
11
n
11
VAL
11
B
PRO
12
n
12
PRO
12
B
ILE
13
n
13
ILE
13
B
TYR
14
n
14
TYR
14
B
ASN
15
n
15
ASN
15
B
VAL
16
n
16
VAL
16
B
GLU
17
n
17
GLU
17
B
LYS
18
n
18
LYS
18
B
TYR
19
n
19
TYR
19
B
LEU
20
n
20
LEU
20
B
ASP
21
n
21
ASP
21
B
GLN
22
n
22
GLN
22
B
CYS
23
n
23
CYS
23
B
VAL
24
n
24
VAL
24
B
GLN
25
n
25
GLN
25
B
ALA
26
n
26
ALA
26
B
LEU
27
n
27
LEU
27
B
LEU
28
n
28
LEU
28
B
ALA
29
n
29
ALA
29
B
GLN
30
n
30
GLN
30
B
THR
31
n
31
THR
31
B
LEU
32
n
32
LEU
32
B
SER
33
n
33
SER
33
B
ASP
34
n
34
ASP
34
B
ILE
35
n
35
ILE
35
B
GLU
36
n
36
GLU
36
B
ILE
37
n
37
ILE
37
B
ILE
38
n
38
ILE
38
B
LEU
39
n
39
LEU
39
B
ILE
40
n
40
ILE
40
B
ASP
41
n
41
ASP
41
B
ASP
42
n
42
ASP
42
B
GLU
43
n
43
GLU
43
B
SER
44
n
44
SER
44
B
PRO
45
n
45
PRO
45
B
ASP
46
n
46
ASP
46
B
ASN
47
n
47
ASN
47
B
CYS
48
n
48
CYS
48
B
PRO
49
n
49
PRO
49
B
LYS
50
n
50
LYS
50
B
ILE
51
n
51
ILE
51
B
CYS
52
n
52
CYS
52
B
ASP
53
n
53
ASP
53
B
ASP
54
n
54
ASP
54
B
TYR
55
n
55
TYR
55
B
ALA
56
n
56
ALA
56
B
ALA
57
n
57
ALA
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
PRO
60
n
60
PRO
60
B
ASN
61
n
61
ASN
61
B
ILE
62
n
62
ILE
62
B
LYS
63
n
63
LYS
63
B
VAL
64
n
64
VAL
64
B
ILE
65
n
65
ILE
65
B
HIS
66
n
66
HIS
66
B
LYS
67
n
67
LYS
67
B
LYS
68
n
68
LYS
68
B
ASN
69
n
69
ASN
69
B
ALA
70
n
70
ALA
70
B
GLY
71
n
71
GLY
71
B
LEU
72
n
72
LEU
72
B
GLY
73
n
73
GLY
73
B
MSE
74
n
74
MSE
74
B
ALA
75
n
75
ALA
75
B
CYS
76
n
76
CYS
76
B
ASN
77
n
77
ASN
77
B
SER
78
n
78
SER
78
B
GLY
79
n
79
GLY
79
B
LEU
80
n
80
LEU
80
B
ASP
81
n
81
ASP
81
B
VAL
82
n
82
VAL
82
B
ALA
83
n
83
ALA
83
B
THR
84
n
84
THR
84
B
GLY
85
n
85
GLY
85
B
GLU
86
n
86
GLU
86
B
TYR
87
n
87
TYR
87
B
VAL
88
n
88
VAL
88
B
ALA
89
n
89
ALA
89
B
PHE
90
n
90
PHE
90
B
CYS
91
n
91
CYS
91
B
ASP
92
n
92
ASP
92
B
SER
93
n
93
SER
93
B
ASP
94
n
94
ASP
94
B
ASP
95
n
95
ASP
95
B
TYR
96
n
96
TYR
96
B
VAL
97
n
97
VAL
97
B
ASP
98
n
98
ASP
98
B
SER
99
n
99
SER
99
B
ASP
100
n
100
ASP
100
B
MSE
101
n
101
MSE
101
B
TYR
102
n
102
TYR
102
B
MSE
103
n
103
MSE
103
B
THR
104
n
104
THR
104
B
MSE
105
n
105
MSE
105
B
TYR
106
n
106
TYR
106
B
ASN
107
n
107
ASN
107
B
VAL
108
n
108
VAL
108
B
ALA
109
n
109
ALA
109
B
GLN
110
n
110
GLN
110
B
LYS
111
n
111
LYS
111
B
TYR
112
n
112
TYR
112
B
THR
113
n
113
THR
113
B
CYS
114
n
114
CYS
114
B
ASP
115
n
115
ASP
115
B
ALA
116
n
116
ALA
116
B
VAL
117
n
117
VAL
117
B
PHE
118
n
118
PHE
118
B
THR
119
n
119
THR
119
B
n
120
120
B
n
121
121
B
n
122
122
B
n
123
123
B
n
124
124
B
n
125
125
B
n
126
126
B
n
127
127
B
n
128
128
B
n
129
129
B
n
130
130
B
n
131
131
B
n
132
132
B
n
133
133
B
n
134
134
B
n
135
135
B
n
136
136
B
n
137
137
B
n
138
138
B
n
139
139
B
PHE
140
n
140
PHE
140
B
LYS
141
n
141
LYS
141
B
LEU
142
n
142
LEU
142
B
TYR
143
n
143
TYR
143
B
LYS
144
n
144
LYS
144
B
ASN
145
n
145
ASN
145
B
LYS
146
n
146
LYS
146
B
ASN
147
n
147
ASN
147
B
GLU
148
n
148
GLU
148
B
ILE
149
n
149
ILE
149
B
HIS
150
n
150
HIS
150
B
THR
151
n
151
THR
151
B
LEU
152
n
152
LEU
152
B
LEU
153
n
153
LEU
153
B
LYS
154
n
154
LYS
154
B
ASP
155
n
155
ASP
155
B
LEU
156
n
156
LEU
156
B
ILE
157
n
157
ILE
157
B
ALA
158
n
158
ALA
158
B
SER
159
n
159
SER
159
B
ASP
160
n
160
ASP
160
B
PRO
161
n
161
PRO
161
B
TYR
162
n
162
TYR
162
B
ALA
163
n
163
ALA
163
B
ARG
164
n
164
ARG
164
B
GLU
165
n
165
GLU
165
B
GLU
166
n
166
GLU
166
B
ARG
167
n
167
ARG
167
B
ALA
168
n
168
ALA
168
B
ILE
169
n
169
ILE
169
B
GLN
170
n
170
GLN
170
B
VAL
171
n
171
VAL
171
B
SER
172
n
172
SER
172
B
ALA
173
n
173
ALA
173
B
LYS
174
n
174
LYS
174
B
VAL
175
n
175
VAL
175
B
VAL
176
n
176
VAL
176
B
LEU
177
n
177
LEU
177
B
TYR
178
n
178
TYR
178
B
ARG
179
n
179
ARG
179
B
ARG
180
n
180
ARG
180
B
ASN
181
n
181
ASN
181
B
LEU
182
n
182
LEU
182
B
ILE
183
n
183
ILE
183
B
GLU
184
n
184
GLU
184
B
LYS
185
n
185
LYS
185
B
LYS
186
n
186
LYS
186
B
HIS
187
n
187
HIS
187
B
LEU
188
n
188
LEU
188
B
ARG
189
n
189
ARG
189
B
PHE
190
n
190
PHE
190
B
VAL
191
n
191
VAL
191
B
SER
192
n
192
SER
192
B
GLU
193
n
193
GLU
193
B
ARG
194
n
194
ARG
194
B
ILE
195
n
195
ILE
195
B
LEU
196
n
196
LEU
196
B
PRO
197
n
197
PRO
197
B
SER
198
n
198
SER
198
B
GLU
199
n
199
GLU
199
B
ASP
200
n
200
ASP
200
B
LEU
201
n
201
LEU
201
B
ILE
202
n
202
ILE
202
B
PHE
203
n
203
PHE
203
B
ASN
204
n
204
ASN
204
B
VAL
205
n
205
VAL
205
B
ASP
206
n
206
ASP
206
B
VAL
207
n
207
VAL
207
B
LEU
208
n
208
LEU
208
B
ALA
209
n
209
ALA
209
B
ASN
210
n
210
ASN
210
B
SER
211
n
211
SER
211
B
ASN
212
n
212
ASN
212
B
ILE
213
n
213
ILE
213
B
VAL
214
n
214
VAL
214
B
CYS
215
n
215
CYS
215
B
VAL
216
n
216
VAL
216
B
LEU
217
n
217
LEU
217
B
PRO
218
n
218
PRO
218
B
n
219
219
B
n
220
220
B
n
221
221
B
n
222
222
B
n
223
223
B
n
224
224
B
n
225
225
B
n
226
226
B
n
227
227
B
n
228
228
B
n
229
229
B
n
230
230
B
n
231
231
B
n
232
232
B
n
233
233
B
n
234
234
B
n
235
235
B
n
236
236
B
n
237
237
B
n
238
238
B
n
239
239
B
n
240
240
B
author_and_software_defined_assembly
PISA
2
dimeric
2010
A
MSE
74
SELENOMETHIONINE
A
MSE
74
MET
A
MSE
101
SELENOMETHIONINE
A
MSE
101
MET
A
MSE
103
SELENOMETHIONINE
A
MSE
103
MET
A
MSE
105
SELENOMETHIONINE
A
MSE
105
MET
B
MSE
74
SELENOMETHIONINE
B
MSE
74
MET
B
MSE
101
SELENOMETHIONINE
B
MSE
101
MET
B
MSE
103
SELENOMETHIONINE
B
MSE
103
MET
B
MSE
105
SELENOMETHIONINE
B
MSE
105
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
63
A
O
LYS
63
A
N
LEU
39
A
N
LEU
39
A
O
GLU
36
A
O
GLU
36
A
N
VAL
9
A
N
VAL
9
A
N
ILE
10
A
N
ILE
10
A
O
ALA
89
A
O
ALA
89
A
N
VAL
88
A
N
VAL
88
A
O
TYR
178
A
O
TYR
178
A
O
LEU
177
A
O
LEU
177
A
N
VAL
117
A
N
VAL
117
A
N
PHE
118
A
N
PHE
118
A
O
CYS
215
A
O
CYS
215
A
O
VAL
214
A
O
VAL
214
A
N
TYR
143
A
N
TYR
143
B
O
LYS
63
B
O
LYS
63
B
N
LEU
39
B
N
LEU
39
B
O
ILE
38
B
O
ILE
38
B
N
VAL
11
B
N
VAL
11
B
N
ILE
10
B
N
ILE
10
B
O
ALA
89
B
O
ALA
89
B
N
VAL
88
B
N
VAL
88
B
O
TYR
178
B
O
TYR
178
B
O
LEU
177
B
O
LEU
177
B
N
VAL
117
B
N
VAL
117
B
N
PHE
118
B
N
PHE
118
B
O
CYS
215
B
O
CYS
215
B
O
VAL
214
B
O
VAL
214
B
N
TYR
143
B
N
TYR
143
1
A
MSE
1
A
MSE
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
GLY
120
A
GLY
120
1
Y
1
A
LEU
121
A
LEU
121
1
Y
1
A
LYS
122
A
LYS
122
1
Y
1
A
ARG
123
A
ARG
123
1
Y
1
A
ILE
124
A
ILE
124
1
Y
1
A
THR
125
A
THR
125
1
Y
1
A
MSE
126
A
MSE
126
1
Y
1
A
ALA
127
A
ALA
127
1
Y
1
A
GLY
128
A
GLY
128
1
Y
1
A
ILE
129
A
ILE
129
1
Y
1
A
PRO
130
A
PRO
130
1
Y
1
A
THR
131
A
THR
131
1
Y
1
A
GLY
132
A
GLY
132
1
Y
1
A
THR
133
A
THR
133
1
Y
1
A
VAL
134
A
VAL
134
1
Y
1
A
THR
135
A
THR
135
1
Y
1
A
HIS
136
A
HIS
136
1
Y
1
A
GLN
137
A
GLN
137
1
Y
1
A
LYS
138
A
LYS
138
1
Y
1
A
GLU
139
A
GLU
139
1
Y
1
A
GLN
219
A
GLN
219
1
Y
1
A
THR
220
A
THR
220
1
Y
1
A
PHE
221
A
PHE
221
1
Y
1
A
TYR
222
A
TYR
222
1
Y
1
A
ASN
223
A
ASN
223
1
Y
1
A
TYR
224
A
TYR
224
1
Y
1
A
ARG
225
A
ARG
225
1
Y
1
A
THR
226
A
THR
226
1
Y
1
A
ASN
227
A
ASN
227
1
Y
1
A
PRO
228
A
PRO
228
1
Y
1
A
ILE
229
A
ILE
229
1
Y
1
A
SER
230
A
SER
230
1
Y
1
A
ILE
231
A
ILE
231
1
Y
1
A
SER
232
A
SER
232
1
Y
1
A
GLU
233
A
GLU
233
1
Y
1
A
GLY
234
A
GLY
234
1
Y
1
A
HIS
235
A
HIS
235
1
Y
1
A
HIS
236
A
HIS
236
1
Y
1
A
HIS
237
A
HIS
237
1
Y
1
A
HIS
238
A
HIS
238
1
Y
1
A
HIS
239
A
HIS
239
1
Y
1
A
HIS
240
A
HIS
240
1
Y
1
B
MSE
1
B
MSE
1
1
Y
1
B
SER
2
B
SER
2
1
Y
1
B
GLY
120
B
GLY
120
1
Y
1
B
LEU
121
B
LEU
121
1
Y
1
B
LYS
122
B
LYS
122
1
Y
1
B
ARG
123
B
ARG
123
1
Y
1
B
ILE
124
B
ILE
124
1
Y
1
B
THR
125
B
THR
125
1
Y
1
B
MSE
126
B
MSE
126
1
Y
1
B
ALA
127
B
ALA
127
1
Y
1
B
GLY
128
B
GLY
128
1
Y
1
B
ILE
129
B
ILE
129
1
Y
1
B
PRO
130
B
PRO
130
1
Y
1
B
THR
131
B
THR
131
1
Y
1
B
GLY
132
B
GLY
132
1
Y
1
B
THR
133
B
THR
133
1
Y
1
B
VAL
134
B
VAL
134
1
Y
1
B
THR
135
B
THR
135
1
Y
1
B
HIS
136
B
HIS
136
1
Y
1
B
GLN
137
B
GLN
137
1
Y
1
B
LYS
138
B
LYS
138
1
Y
1
B
GLU
139
B
GLU
139
1
Y
1
B
GLN
219
B
GLN
219
1
Y
1
B
THR
220
B
THR
220
1
Y
1
B
PHE
221
B
PHE
221
1
Y
1
B
TYR
222
B
TYR
222
1
Y
1
B
ASN
223
B
ASN
223
1
Y
1
B
TYR
224
B
TYR
224
1
Y
1
B
ARG
225
B
ARG
225
1
Y
1
B
THR
226
B
THR
226
1
Y
1
B
ASN
227
B
ASN
227
1
Y
1
B
PRO
228
B
PRO
228
1
Y
1
B
ILE
229
B
ILE
229
1
Y
1
B
SER
230
B
SER
230
1
Y
1
B
ILE
231
B
ILE
231
1
Y
1
B
SER
232
B
SER
232
1
Y
1
B
GLU
233
B
GLU
233
1
Y
1
B
GLY
234
B
GLY
234
1
Y
1
B
HIS
235
B
HIS
235
1
Y
1
B
HIS
236
B
HIS
236
1
Y
1
B
HIS
237
B
HIS
237
1
Y
1
B
HIS
238
B
HIS
238
1
Y
1
B
HIS
239
B
HIS
239
1
Y
1
B
HIS
240
B
HIS
240
1
Y
1
-16.62
2.70
111.00
94.38
B
B
B
N
CA
C
ASN
ASN
ASN
212
212
212
N
1
A
VAL
16
-145.52
27.53
1
A
ASP
46
-89.31
-143.77
1
A
ALA
70
-150.72
3.92
1
A
ASP
94
-80.06
30.06
1
B
ASP
34
-106.86
77.55
1
B
ASP
46
-82.95
-149.12
1
B
ALA
70
-150.78
1.37
1
B
ILE
213
54.60
110.20
protein_rep.param
protein.top
carbohydrate.param
carbohydrate.top
water_rep.param
water.top
ion.param
ion.top
carbohydrate.param
carbohydrate.top
39.9
0.00
0.00
0.00
0.00
0.00
0.00
Residues listed as missing in Remark 465 are due to lack of electron density. Residues with missing atoms listed in Remark 470 are due to lack of electron density for side chains and modeled as alanines.
0.257
0.008
0.23
0.23
0.23
2.35
27.83
1119
23202
23202
4.8
94.4
RANDOM
59750.60
0.000000
1
RESTRAINED
THROUGHOUT
0.0
SAD
Engh & Huber
FLAT MODEL
34.0043
0.345065
0.39
0.32
5.00
0.31
0.34
2.35
27.83
104
3214
0
0
3110
0.008
1.4
23.1
0.87
1.32
1.50
2.07
2.00
2.89
2.00
3.43
2.50
0.336
0.027
0.344
2.50
150
2892
6
4.9
75.1
44.8
2.35
50.0
3BCV
23202
23202
0.0
0.0
0.083
1
14.6
19.6
98.4
0.448
2.35
2.43
2.0
2056
1
3.2
84.6
refinement
CNS
1.1
data collection
CBASS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SHELXD
phasing
SHARP
model building
ARP/wARP
Putative glycosyltransferase protein
Crystal structure of a putative glycosyltransferase from Bacteroides fragilis
1
N
N
1
N
N
2
N
N
2
N
N
A
TYR
19
A
TYR
19
HELX_P
A
ALA
29
A
ALA
29
1
1
11
A
ASN
47
A
ASN
47
HELX_P
A
TYR
59
A
TYR
59
1
2
13
A
GLY
71
A
GLY
71
HELX_P
A
ALA
83
A
ALA
83
1
3
13
A
ASP
100
A
ASP
100
HELX_P
A
THR
113
A
THR
113
1
4
14
A
ASN
145
A
ASN
145
HELX_P
A
LYS
154
A
LYS
154
1
5
10
A
ASP
155
A
ASP
155
HELX_P
A
ILE
157
A
ILE
157
5
6
3
A
ASP
160
A
ASP
160
HELX_P
A
SER
172
A
SER
172
1
7
13
A
ARG
180
A
ARG
180
HELX_P
A
LYS
186
A
LYS
186
1
8
7
A
SER
198
A
SER
198
HELX_P
A
ALA
209
A
ALA
209
1
9
12
B
VAL
16
B
VAL
16
HELX_P
B
ALA
29
B
ALA
29
1
10
14
B
ASN
47
B
ASN
47
HELX_P
B
TYR
59
B
TYR
59
1
11
13
B
GLY
71
B
GLY
71
HELX_P
B
ALA
83
B
ALA
83
1
12
13
B
ASP
100
B
ASP
100
HELX_P
B
THR
113
B
THR
113
1
13
14
B
ASN
145
B
ASN
145
HELX_P
B
LYS
154
B
LYS
154
1
14
10
B
ASP
155
B
ASP
155
HELX_P
B
ILE
157
B
ILE
157
5
15
3
B
ASP
160
B
ASP
160
HELX_P
B
SER
172
B
SER
172
1
16
13
B
ARG
180
B
ARG
180
HELX_P
B
LYS
186
B
LYS
186
1
17
7
B
SER
198
B
SER
198
HELX_P
B
ASN
210
B
ASN
210
1
18
13
covale
1.325
both
A
GLY
73
A
C
GLY
73
1_555
A
MSE
74
A
N
MSE
74
1_555
covale
1.327
both
A
MSE
74
A
C
MSE
74
1_555
A
ALA
75
A
N
ALA
75
1_555
covale
1.325
both
A
ASP
100
A
C
ASP
100
1_555
A
MSE
101
A
N
MSE
101
1_555
covale
1.328
both
A
MSE
101
A
C
MSE
101
1_555
A
TYR
102
A
N
TYR
102
1_555
covale
1.323
both
A
TYR
102
A
C
TYR
102
1_555
A
MSE
103
A
N
MSE
103
1_555
covale
1.328
both
A
MSE
103
A
C
MSE
103
1_555
A
THR
104
A
N
THR
104
1_555
covale
1.327
both
A
THR
104
A
C
THR
104
1_555
A
MSE
105
A
N
MSE
105
1_555
covale
1.323
both
A
MSE
105
A
C
MSE
105
1_555
A
TYR
106
A
N
TYR
106
1_555
covale
1.329
both
B
GLY
73
B
C
GLY
73
1_555
B
MSE
74
B
N
MSE
74
1_555
covale
1.330
both
B
MSE
74
B
C
MSE
74
1_555
B
ALA
75
B
N
ALA
75
1_555
covale
1.324
both
B
ASP
100
B
C
ASP
100
1_555
B
MSE
101
B
N
MSE
101
1_555
covale
1.328
both
B
MSE
101
B
C
MSE
101
1_555
B
TYR
102
B
N
TYR
102
1_555
covale
1.326
both
B
TYR
102
B
C
TYR
102
1_555
B
MSE
103
B
N
MSE
103
1_555
covale
1.326
both
B
MSE
103
B
C
MSE
103
1_555
B
THR
104
B
N
THR
104
1_555
covale
1.330
both
B
THR
104
B
C
THR
104
1_555
B
MSE
105
B
N
MSE
105
1_555
covale
1.328
both
B
MSE
105
B
C
MSE
105
1_555
B
TYR
106
B
N
TYR
106
1_555
TRANSFERASE
Glycosyltransferase, Protein Structure Initiative II, PSI-II, 12059a, NYSGXRC, Structural Genomics, New York SGX Research Center for Structural Genomics, TRANSFERASE
Q5LBM4_BACFN
UNP
1
2
Q5LBM4
IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGLDVA
TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYA
REERAIQVSAKVVLYRRNLIEKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQTFYNYRTNPISIS
2
230
3BCV
4
232
Q5LBM4
A
1
4
232
2
230
3BCV
4
232
Q5LBM4
B
1
4
232
1
expression tag
MSE
1
3BCV
A
Q5LBM4
UNP
1
1
expression tag
SER
2
3BCV
A
Q5LBM4
UNP
2
1
expression tag
LEU
3
3BCV
A
Q5LBM4
UNP
3
1
expression tag
GLU
233
3BCV
A
Q5LBM4
UNP
233
1
expression tag
GLY
234
3BCV
A
Q5LBM4
UNP
234
1
expression tag
HIS
235
3BCV
A
Q5LBM4
UNP
235
1
expression tag
HIS
236
3BCV
A
Q5LBM4
UNP
236
1
expression tag
HIS
237
3BCV
A
Q5LBM4
UNP
237
1
expression tag
HIS
238
3BCV
A
Q5LBM4
UNP
238
1
expression tag
HIS
239
3BCV
A
Q5LBM4
UNP
239
1
expression tag
HIS
240
3BCV
A
Q5LBM4
UNP
240
2
expression tag
MSE
1
3BCV
B
Q5LBM4
UNP
1
2
expression tag
SER
2
3BCV
B
Q5LBM4
UNP
2
2
expression tag
LEU
3
3BCV
B
Q5LBM4
UNP
3
2
expression tag
GLU
233
3BCV
B
Q5LBM4
UNP
233
2
expression tag
GLY
234
3BCV
B
Q5LBM4
UNP
234
2
expression tag
HIS
235
3BCV
B
Q5LBM4
UNP
235
2
expression tag
HIS
236
3BCV
B
Q5LBM4
UNP
236
2
expression tag
HIS
237
3BCV
B
Q5LBM4
UNP
237
2
expression tag
HIS
238
3BCV
B
Q5LBM4
UNP
238
2
expression tag
HIS
239
3BCV
B
Q5LBM4
UNP
239
2
expression tag
HIS
240
3BCV
B
Q5LBM4
UNP
240
8
8
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
ILE
62
A
ILE
62
A
HIS
66
A
HIS
66
A
ILE
35
A
ILE
35
A
ASP
41
A
ASP
41
A
VAL
7
A
VAL
7
A
ILE
13
A
ILE
13
A
TYR
87
A
TYR
87
A
PHE
90
A
PHE
90
A
VAL
176
A
VAL
176
A
ARG
179
A
ARG
179
A
ALA
116
A
ALA
116
A
PHE
118
A
PHE
118
A
VAL
214
A
VAL
214
A
VAL
216
A
VAL
216
A
LYS
141
A
LYS
141
A
TYR
143
A
TYR
143
B
ILE
62
B
ILE
62
B
HIS
66
B
HIS
66
B
ILE
35
B
ILE
35
B
ASP
41
B
ASP
41
B
VAL
7
B
VAL
7
B
ILE
13
B
ILE
13
B
TYR
87
B
TYR
87
B
PHE
90
B
PHE
90
B
VAL
176
B
VAL
176
B
ARG
179
B
ARG
179
B
ALA
116
B
ALA
116
B
PHE
118
B
PHE
118
B
VAL
214
B
VAL
214
B
VAL
216
B
VAL
216
B
LYS
141
B
LYS
141
B
TYR
143
B
TYR
143
197
I 2 3