0.023050 0.000000 0.000000 0.000000 0.021602 0.000000 0.000000 0.000000 0.009838 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 43.384 46.292 101.644 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C4 H10 O3 106.120 DI(HYDROXYETHYL)ETHER non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution 10.2210/pdb3bdi/pdb pdb_00003bdi 100 1 Adjustable focusing mirrors in K-B geometry CCD 2007-10-25 MARMOSAIC 300 mm CCD Si(111) Double crystal MAD M x-ray 1 0.94939 1.0 0.97939 1.0 0.97953 1.0 23-ID-D APS 0.94939, 0.97939, 0.97953 SYNCHROTRON APS BEAMLINE 23-ID-D 23516.635 Uncharacterized protein Ta0194 1 man polymer 106.120 DI(HYDROXYETHYL)ETHER 3 syn non-polymer 18.015 water 203 nat water no yes G(MSE)ALQEEFIDVNGTRVFQRK(MSE)VTDSNRRSIALFHGYSFTS(MSE)DWDKADLFNNYSKIGYNVYAPDYPGFG RSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVI(MSE)GAS(MSE)GGG(MSE)VI(MSE)TTLQYPDIVDGIIAVA PAWVESLKGD(MSE)KKIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLRNL GMALQEEFIDVNGTRVFQRKMVTDSNRRSIALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDR GDLKHAAEFIRDYLKANGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHV VPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLRNL A 388819 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermoplasma Thermoplasma acidophilum DSM 1728, AMRC-C165, IFO 15155, JCM 9062 Escherichia sample 25905 NP_393672.1, Ta0194 273075 Thermoplasma acidophilum DSM 1728 562 Escherichia coli HK100 Plasmid speedET 1 2.17 43.32 VAPOR DIFFUSION, SITTING DROP 6.5 NANODROP, 5.0% PEG 3000, 44.0% PEG 400, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software software struct_conn database_2 struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2007-11-27 1 1 2011-07-13 1 2 2017-10-25 1 3 2019-07-24 1 4 2023-01-25 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SEQUENCE 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS A GLU AT POSITION 190 INSTEAD OF LYS. THIS IS CONSISTENT WITH THE OBSERVED ELECTRON DENSITY AT THIS POSITION. Y RCSB Y RCSB 2007-11-14 REL REL PEG DI(HYDROXYETHYL)ETHER HOH water REMARK 999 SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 DNA SEQUENCING OF THE CLONED CONSTRUCT REVEALS A GLU AT POSITION REMARK 999 190 INSTEAD OF LYS. THIS IS CONSISTENT WITH THE OBSERVED ELECTRON REMARK 999 DENSITY AT THIS POSITION. REMARK 999 PEG 1 2 PEG PEG 207 A PEG 2 2 PEG PEG 208 A PEG 3 2 PEG PEG 209 A HOH 4 3 HOH HOH 210 A HOH 5 3 HOH HOH 211 A HOH 6 3 HOH HOH 212 A HOH 7 3 HOH HOH 213 A HOH 8 3 HOH HOH 214 A HOH 9 3 HOH HOH 215 A HOH 10 3 HOH HOH 216 A HOH 11 3 HOH HOH 217 A HOH 12 3 HOH HOH 218 A HOH 13 3 HOH HOH 219 A HOH 14 3 HOH HOH 220 A HOH 15 3 HOH HOH 221 A HOH 16 3 HOH HOH 222 A HOH 17 3 HOH HOH 223 A HOH 18 3 HOH HOH 224 A HOH 19 3 HOH HOH 225 A HOH 20 3 HOH HOH 226 A HOH 21 3 HOH HOH 227 A HOH 22 3 HOH HOH 228 A HOH 23 3 HOH HOH 229 A HOH 24 3 HOH HOH 230 A HOH 25 3 HOH HOH 231 A HOH 26 3 HOH HOH 232 A HOH 27 3 HOH HOH 233 A HOH 28 3 HOH HOH 234 A HOH 29 3 HOH HOH 235 A HOH 30 3 HOH HOH 236 A HOH 31 3 HOH HOH 237 A HOH 32 3 HOH HOH 238 A HOH 33 3 HOH HOH 239 A HOH 34 3 HOH HOH 240 A HOH 35 3 HOH HOH 241 A HOH 36 3 HOH HOH 242 A HOH 37 3 HOH HOH 243 A HOH 38 3 HOH HOH 244 A HOH 39 3 HOH HOH 245 A HOH 40 3 HOH HOH 246 A HOH 41 3 HOH HOH 247 A HOH 42 3 HOH HOH 248 A HOH 43 3 HOH HOH 249 A HOH 44 3 HOH HOH 250 A HOH 45 3 HOH HOH 251 A HOH 46 3 HOH HOH 252 A HOH 47 3 HOH HOH 253 A HOH 48 3 HOH HOH 254 A HOH 49 3 HOH HOH 255 A HOH 50 3 HOH HOH 256 A HOH 51 3 HOH HOH 257 A HOH 52 3 HOH HOH 258 A HOH 53 3 HOH HOH 259 A HOH 54 3 HOH HOH 260 A HOH 55 3 HOH HOH 261 A HOH 56 3 HOH HOH 262 A HOH 57 3 HOH HOH 263 A HOH 58 3 HOH HOH 264 A HOH 59 3 HOH HOH 265 A HOH 60 3 HOH HOH 266 A HOH 61 3 HOH HOH 267 A HOH 62 3 HOH HOH 268 A HOH 63 3 HOH HOH 269 A HOH 64 3 HOH HOH 270 A HOH 65 3 HOH HOH 271 A HOH 66 3 HOH HOH 272 A HOH 67 3 HOH HOH 273 A HOH 68 3 HOH HOH 274 A HOH 69 3 HOH HOH 275 A HOH 70 3 HOH HOH 276 A HOH 71 3 HOH HOH 277 A HOH 72 3 HOH HOH 278 A HOH 73 3 HOH HOH 279 A HOH 74 3 HOH HOH 280 A HOH 75 3 HOH HOH 281 A HOH 76 3 HOH HOH 282 A HOH 77 3 HOH HOH 283 A HOH 78 3 HOH HOH 284 A HOH 79 3 HOH HOH 285 A HOH 80 3 HOH HOH 286 A HOH 81 3 HOH HOH 287 A HOH 82 3 HOH HOH 288 A HOH 83 3 HOH HOH 289 A HOH 84 3 HOH HOH 290 A HOH 85 3 HOH HOH 291 A HOH 86 3 HOH HOH 292 A HOH 87 3 HOH HOH 293 A HOH 88 3 HOH HOH 294 A HOH 89 3 HOH HOH 295 A HOH 90 3 HOH HOH 296 A HOH 91 3 HOH HOH 297 A HOH 92 3 HOH HOH 298 A HOH 93 3 HOH HOH 299 A HOH 94 3 HOH HOH 300 A HOH 95 3 HOH HOH 301 A HOH 96 3 HOH HOH 302 A HOH 97 3 HOH HOH 303 A HOH 98 3 HOH HOH 304 A HOH 99 3 HOH HOH 305 A HOH 100 3 HOH HOH 306 A HOH 101 3 HOH HOH 307 A HOH 102 3 HOH HOH 308 A HOH 103 3 HOH HOH 309 A HOH 104 3 HOH HOH 310 A HOH 105 3 HOH HOH 311 A HOH 106 3 HOH HOH 312 A HOH 107 3 HOH HOH 313 A HOH 108 3 HOH HOH 314 A HOH 109 3 HOH HOH 315 A HOH 110 3 HOH HOH 316 A HOH 111 3 HOH HOH 317 A HOH 112 3 HOH HOH 318 A HOH 113 3 HOH HOH 319 A HOH 114 3 HOH HOH 320 A HOH 115 3 HOH HOH 321 A HOH 116 3 HOH HOH 322 A HOH 117 3 HOH HOH 323 A HOH 118 3 HOH HOH 324 A HOH 119 3 HOH HOH 325 A HOH 120 3 HOH HOH 326 A HOH 121 3 HOH HOH 327 A HOH 122 3 HOH HOH 328 A HOH 123 3 HOH HOH 329 A HOH 124 3 HOH HOH 330 A HOH 125 3 HOH HOH 331 A HOH 126 3 HOH HOH 332 A HOH 127 3 HOH HOH 333 A HOH 128 3 HOH HOH 334 A HOH 129 3 HOH HOH 335 A HOH 130 3 HOH HOH 336 A HOH 131 3 HOH HOH 337 A HOH 132 3 HOH HOH 338 A HOH 133 3 HOH HOH 339 A HOH 134 3 HOH HOH 340 A HOH 135 3 HOH HOH 341 A HOH 136 3 HOH HOH 342 A HOH 137 3 HOH HOH 343 A HOH 138 3 HOH HOH 344 A HOH 139 3 HOH HOH 345 A HOH 140 3 HOH HOH 346 A HOH 141 3 HOH HOH 347 A HOH 142 3 HOH HOH 348 A HOH 143 3 HOH HOH 349 A HOH 144 3 HOH HOH 350 A HOH 145 3 HOH HOH 351 A HOH 146 3 HOH HOH 352 A HOH 147 3 HOH HOH 353 A HOH 148 3 HOH HOH 354 A HOH 149 3 HOH HOH 355 A HOH 150 3 HOH HOH 356 A HOH 151 3 HOH HOH 357 A HOH 152 3 HOH HOH 358 A HOH 153 3 HOH HOH 359 A HOH 154 3 HOH HOH 360 A HOH 155 3 HOH HOH 361 A HOH 156 3 HOH HOH 362 A HOH 157 3 HOH HOH 363 A HOH 158 3 HOH HOH 364 A HOH 159 3 HOH HOH 365 A HOH 160 3 HOH HOH 366 A HOH 161 3 HOH HOH 367 A HOH 162 3 HOH HOH 368 A HOH 163 3 HOH HOH 369 A HOH 164 3 HOH HOH 370 A HOH 165 3 HOH HOH 371 A HOH 166 3 HOH HOH 372 A HOH 167 3 HOH HOH 373 A HOH 168 3 HOH HOH 374 A HOH 169 3 HOH HOH 375 A HOH 170 3 HOH HOH 376 A HOH 171 3 HOH HOH 377 A HOH 172 3 HOH HOH 378 A HOH 173 3 HOH HOH 379 A HOH 174 3 HOH HOH 380 A HOH 175 3 HOH HOH 381 A HOH 176 3 HOH HOH 382 A HOH 177 3 HOH HOH 383 A HOH 178 3 HOH HOH 384 A HOH 179 3 HOH HOH 385 A HOH 180 3 HOH HOH 386 A HOH 181 3 HOH HOH 387 A HOH 182 3 HOH HOH 388 A HOH 183 3 HOH HOH 389 A HOH 184 3 HOH HOH 390 A HOH 185 3 HOH HOH 391 A HOH 186 3 HOH HOH 392 A HOH 187 3 HOH HOH 393 A HOH 188 3 HOH HOH 394 A HOH 189 3 HOH HOH 395 A HOH 190 3 HOH HOH 396 A HOH 191 3 HOH HOH 397 A HOH 192 3 HOH HOH 398 A HOH 193 3 HOH HOH 399 A HOH 194 3 HOH HOH 400 A HOH 195 3 HOH HOH 401 A HOH 196 3 HOH HOH 402 A HOH 197 3 HOH HOH 403 A HOH 198 3 HOH HOH 404 A HOH 199 3 HOH HOH 405 A HOH 200 3 HOH HOH 406 A HOH 201 3 HOH HOH 407 A HOH 202 3 HOH HOH 408 A HOH 203 3 HOH HOH 409 A HOH 204 3 HOH HOH 410 A HOH 205 3 HOH HOH 411 A HOH 206 3 HOH HOH 412 A GLY 0 n 1 GLY 0 A MSE 1 n 2 MSE 1 A ALA 2 n 3 ALA 2 A LEU 3 n 4 LEU 3 A GLN 4 n 5 GLN 4 A GLU 5 n 6 GLU 5 A GLU 6 n 7 GLU 6 A PHE 7 n 8 PHE 7 A ILE 8 n 9 ILE 8 A ASP 9 n 10 ASP 9 A VAL 10 n 11 VAL 10 A ASN 11 n 12 ASN 11 A GLY 12 n 13 GLY 12 A THR 13 n 14 THR 13 A ARG 14 n 15 ARG 14 A VAL 15 n 16 VAL 15 A PHE 16 n 17 PHE 16 A GLN 17 n 18 GLN 17 A ARG 18 n 19 ARG 18 A LYS 19 n 20 LYS 19 A MSE 20 n 21 MSE 20 A VAL 21 n 22 VAL 21 A THR 22 n 23 THR 22 A ASP 23 n 24 ASP 23 A SER 24 n 25 SER 24 A ASN 25 n 26 ASN 25 A ARG 26 n 27 ARG 26 A ARG 27 n 28 ARG 27 A SER 28 n 29 SER 28 A ILE 29 n 30 ILE 29 A ALA 30 n 31 ALA 30 A LEU 31 n 32 LEU 31 A PHE 32 n 33 PHE 32 A HIS 33 n 34 HIS 33 A GLY 34 n 35 GLY 34 A TYR 35 n 36 TYR 35 A SER 36 n 37 SER 36 A PHE 37 n 38 PHE 37 A THR 38 n 39 THR 38 A SER 39 n 40 SER 39 A MSE 40 n 41 MSE 40 A ASP 41 n 42 ASP 41 A TRP 42 n 43 TRP 42 A ASP 43 n 44 ASP 43 A LYS 44 n 45 LYS 44 A ALA 45 n 46 ALA 45 A ASP 46 n 47 ASP 46 A LEU 47 n 48 LEU 47 A PHE 48 n 49 PHE 48 A ASN 49 n 50 ASN 49 A ASN 50 n 51 ASN 50 A TYR 51 n 52 TYR 51 A SER 52 n 53 SER 52 A LYS 53 n 54 LYS 53 A ILE 54 n 55 ILE 54 A GLY 55 n 56 GLY 55 A TYR 56 n 57 TYR 56 A ASN 57 n 58 ASN 57 A VAL 58 n 59 VAL 58 A TYR 59 n 60 TYR 59 A ALA 60 n 61 ALA 60 A PRO 61 n 62 PRO 61 A ASP 62 n 63 ASP 62 A TYR 63 n 64 TYR 63 A PRO 64 n 65 PRO 64 A GLY 65 n 66 GLY 65 A PHE 66 n 67 PHE 66 A GLY 67 n 68 GLY 67 A ARG 68 n 69 ARG 68 A SER 69 n 70 SER 69 A ALA 70 n 71 ALA 70 A SER 71 n 72 SER 71 A SER 72 n 73 SER 72 A GLU 73 n 74 GLU 73 A LYS 74 n 75 LYS 74 A TYR 75 n 76 TYR 75 A GLY 76 n 77 GLY 76 A ILE 77 n 78 ILE 77 A ASP 78 n 79 ASP 78 A ARG 79 n 80 ARG 79 A GLY 80 n 81 GLY 80 A ASP 81 n 82 ASP 81 A LEU 82 n 83 LEU 82 A LYS 83 n 84 LYS 83 A HIS 84 n 85 HIS 84 A ALA 85 n 86 ALA 85 A ALA 86 n 87 ALA 86 A GLU 87 n 88 GLU 87 A PHE 88 n 89 PHE 88 A ILE 89 n 90 ILE 89 A ARG 90 n 91 ARG 90 A ASP 91 n 92 ASP 91 A TYR 92 n 93 TYR 92 A LEU 93 n 94 LEU 93 A LYS 94 n 95 LYS 94 A ALA 95 n 96 ALA 95 A ASN 96 n 97 ASN 96 A GLY 97 n 98 GLY 97 A VAL 98 n 99 VAL 98 A ALA 99 n 100 ALA 99 A ARG 100 n 101 ARG 100 A SER 101 n 102 SER 101 A VAL 102 n 103 VAL 102 A ILE 103 n 104 ILE 103 A MSE 104 n 105 MSE 104 A GLY 105 n 106 GLY 105 A ALA 106 n 107 ALA 106 A SER 107 n 108 SER 107 A MSE 108 n 109 MSE 108 A GLY 109 n 110 GLY 109 A GLY 110 n 111 GLY 110 A GLY 111 n 112 GLY 111 A MSE 112 n 113 MSE 112 A VAL 113 n 114 VAL 113 A ILE 114 n 115 ILE 114 A MSE 115 n 116 MSE 115 A THR 116 n 117 THR 116 A THR 117 n 118 THR 117 A LEU 118 n 119 LEU 118 A GLN 119 n 120 GLN 119 A TYR 120 n 121 TYR 120 A PRO 121 n 122 PRO 121 A ASP 122 n 123 ASP 122 A ILE 123 n 124 ILE 123 A VAL 124 n 125 VAL 124 A ASP 125 n 126 ASP 125 A GLY 126 n 127 GLY 126 A ILE 127 n 128 ILE 127 A ILE 128 n 129 ILE 128 A ALA 129 n 130 ALA 129 A VAL 130 n 131 VAL 130 A ALA 131 n 132 ALA 131 A PRO 132 n 133 PRO 132 A ALA 133 n 134 ALA 133 A TRP 134 n 135 TRP 134 A VAL 135 n 136 VAL 135 A GLU 136 n 137 GLU 136 A SER 137 n 138 SER 137 A LEU 138 n 139 LEU 138 A LYS 139 n 140 LYS 139 A GLY 140 n 141 GLY 140 A ASP 141 n 142 ASP 141 A MSE 142 n 143 MSE 142 A LYS 143 n 144 LYS 143 A LYS 144 n 145 LYS 144 A ILE 145 n 146 ILE 145 A ARG 146 n 147 ARG 146 A GLN 147 n 148 GLN 147 A LYS 148 n 149 LYS 148 A THR 149 n 150 THR 149 A LEU 150 n 151 LEU 150 A LEU 151 n 152 LEU 151 A VAL 152 n 153 VAL 152 A TRP 153 n 154 TRP 153 A GLY 154 n 155 GLY 154 A SER 155 n 156 SER 155 A LYS 156 n 157 LYS 156 A ASP 157 n 158 ASP 157 A HIS 158 n 159 HIS 158 A VAL 159 n 160 VAL 159 A VAL 160 n 161 VAL 160 A PRO 161 n 162 PRO 161 A ILE 162 n 163 ILE 162 A ALA 163 n 164 ALA 163 A LEU 164 n 165 LEU 164 A SER 165 n 166 SER 165 A LYS 166 n 167 LYS 166 A GLU 167 n 168 GLU 167 A TYR 168 n 169 TYR 168 A ALA 169 n 170 ALA 169 A SER 170 n 171 SER 170 A ILE 171 n 172 ILE 171 A ILE 172 n 173 ILE 172 A SER 173 n 174 SER 173 A GLY 174 n 175 GLY 174 A SER 175 n 176 SER 175 A ARG 176 n 177 ARG 176 A LEU 177 n 178 LEU 177 A GLU 178 n 179 GLU 178 A ILE 179 n 180 ILE 179 A VAL 180 n 181 VAL 180 A GLU 181 n 182 GLU 181 A GLY 182 n 183 GLY 182 A SER 183 n 184 SER 183 A GLY 184 n 185 GLY 184 A HIS 185 n 186 HIS 185 A PRO 186 n 187 PRO 186 A VAL 187 n 188 VAL 187 A TYR 188 n 189 TYR 188 A ILE 189 n 190 ILE 189 A GLU 190 n 191 GLU 190 A LYS 191 n 192 LYS 191 A PRO 192 n 193 PRO 192 A GLU 193 n 194 GLU 193 A GLU 194 n 195 GLU 194 A PHE 195 n 196 PHE 195 A VAL 196 n 197 VAL 196 A ARG 197 n 198 ARG 197 A ILE 198 n 199 ILE 198 A THR 199 n 200 THR 199 A VAL 200 n 201 VAL 200 A ASP 201 n 202 ASP 201 A PHE 202 n 203 PHE 202 A LEU 203 n 204 LEU 203 A ARG 204 n 205 ARG 204 A ASN 205 n 206 ASN 205 A LEU 206 n 207 LEU 206 A 0.2299 0.1697 -0.0316 0.4640 -0.1047 0.1473 -0.0213 -0.0236 -0.0248 -0.1118 0.0053 -0.0359 -0.0081 0.0068 0.0161 -0.0013 -0.0016 0.0182 -0.0114 0.0010 -0.0160 refined 29.5682 26.7390 13.5602 X-RAY DIFFRACTION A 0 A 1 A 206 A 207 X-RAY DIFFRACTION 1 software_defined_assembly PISA 1 monomeric A MSE 1 SELENOMETHIONINE A MSE 2 MET A MSE 20 SELENOMETHIONINE A MSE 21 MET A MSE 40 SELENOMETHIONINE A MSE 41 MET A MSE 104 SELENOMETHIONINE A MSE 105 MET A MSE 108 SELENOMETHIONINE A MSE 109 MET A MSE 112 SELENOMETHIONINE A MSE 113 MET A MSE 115 SELENOMETHIONINE A MSE 116 MET A MSE 142 SELENOMETHIONINE A MSE 143 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 6 A N GLU 7 A O GLN 17 A O GLN 18 A N MSE 20 A N MSE 21 A O VAL 58 A O VAL 59 A O ASN 57 A O ASN 58 A N ARG 27 A N ARG 28 A N SER 28 A N SER 29 A O VAL 102 A O VAL 103 A N GLY 105 A N GLY 106 A O VAL 130 A O VAL 131 A N ALA 129 A N ALA 130 A O LEU 150 A O LEU 151 A N LEU 151 A N LEU 152 A O ARG 176 A O ARG 177 1 A CG ASP 23 A CG ASP 24 1 Y 1 A OD1 ASP 23 A OD1 ASP 24 1 Y 1 A OD2 ASP 23 A OD2 ASP 24 1 Y 1 A CD ARG 26 A CD ARG 27 1 Y 1 A NE ARG 26 A NE ARG 27 1 Y 1 A CZ ARG 26 A CZ ARG 27 1 Y 1 A NH1 ARG 26 A NH1 ARG 27 1 Y 1 A NH2 ARG 26 A NH2 ARG 27 1 Y 1 A CZ ARG 27 A CZ ARG 28 1 Y 1 A NH1 ARG 27 A NH1 ARG 28 1 Y 1 A NH2 ARG 27 A NH2 ARG 28 1 Y 1 A CE LYS 83 A CE LYS 84 1 Y 1 A NZ LYS 83 A NZ LYS 84 1 Y 1 A CE LYS 94 A CE LYS 95 1 Y 1 A NZ LYS 94 A NZ LYS 95 1 Y 1 A CD ARG 100 A CD ARG 101 1 Y 1 A NE ARG 100 A NE ARG 101 1 Y 1 A CZ ARG 100 A CZ ARG 101 1 Y 1 A NH1 ARG 100 A NH1 ARG 101 1 Y 1 A NH2 ARG 100 A NH2 ARG 101 1 Y 1 A CG LYS 144 A CG LYS 145 1 Y 1 A CD LYS 144 A CD LYS 145 1 Y 1 A CE LYS 144 A CE LYS 145 1 Y 1 A NZ LYS 144 A NZ LYS 145 1 Y 1 A NH1 ARG 146 A NH1 ARG 147 1 Y 1 A NH2 ARG 146 A NH2 ARG 147 1 Y 1 A CD LYS 166 A CD LYS 167 1 Y 1 A CE LYS 166 A CE LYS 167 1 Y 1 A NZ LYS 166 A NZ LYS 167 1 Y 1 A CD GLU 193 A CD GLU 194 1 Y 1 A OE1 GLU 193 A OE1 GLU 194 1 Y 1 A OE2 GLU 193 A OE2 GLU 194 1 Y 1 A A OE1 O GLU HOH 87 318 2.14 B 1 A A OE2 OH GLU TYR 87 120 2.18 A 1 A A CD OE2 GLU GLU 178 178 -0.081 0.011 1.252 1.171 A A N 1 A SER 107 62.67 -122.66 1 A SER 107 62.67 -119.55 11.878 0.780 0.000 0.000 -0.640 0.000 -0.140 0.966 0.951 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. POLYETHYLENE GLYCOL MOLECULES FROM THE CRYSTALLIZATION CONDITIONS WERE MODELED. 0.189 0.163 0.164 1.450 27.338 1851 37039 5.000 99.880 2.094 0.041 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.064 0.066 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.450 27.338 203 1820 21 0 1596 0.016 0.022 1779 0.001 0.020 1211 1.622 1.956 2414 0.973 3.000 2953 6.481 5.000 232 40.007 23.867 75 12.771 15.000 301 12.993 15.000 11 0.102 0.200 260 0.008 0.020 2038 0.002 0.020 373 0.221 0.200 366 0.196 0.200 1255 0.185 0.200 878 0.086 0.200 895 0.219 0.200 154 0.145 0.200 8 0.292 0.200 67 0.115 0.200 22 1.847 3.000 1191 0.478 3.000 453 2.415 5.000 1795 3.791 7.000 752 4.910 9.000 619 0.267 0.196 1.488 127 2548 2675 20 99.780 12.90 1.45 27.338 3BDI 37089 0.087 0.087 1 3.100 3.500 99.900 0.194 1.45 1.49 3.5 6659 2676 0.194 1 2.50 99.90 0.190 1.49 1.53 3.7 8367 2614 0.190 1 3.20 100.00 0.170 1.53 1.57 4.1 9280 2580 0.170 1 3.60 100.00 0.143 1.57 1.62 4.7 9007 2499 0.143 1 3.60 100.00 0.130 1.62 1.67 5.2 8776 2430 0.130 1 3.60 100.00 0.121 1.67 1.73 5.5 8416 2327 0.121 1 3.60 100.00 0.112 1.73 1.80 5.7 8194 2256 0.112 1 3.60 100.00 0.106 1.80 1.87 6.1 7941 2196 0.106 1 3.60 100.00 0.106 1.87 1.96 6.1 7503 2076 0.106 1 3.60 100.00 0.097 1.96 2.05 6.4 7380 2039 0.097 1 3.60 100.00 0.081 2.05 2.16 7.6 6853 1897 0.081 1 3.60 100.00 0.079 2.16 2.29 8.1 6637 1836 0.079 1 3.60 100.00 0.082 2.29 2.45 7.4 6222 1717 0.082 1 3.60 100.00 0.094 2.45 2.65 6.2 5662 1587 0.094 1 3.60 100.00 0.088 2.65 2.90 5.1 5340 1506 0.088 1 3.50 100.00 0.077 2.90 3.24 7.1 4720 1330 0.077 1 3.50 100.00 0.072 3.24 3.74 6.4 4275 1209 0.072 1 3.50 100.00 0.078 3.74 4.59 5.6 3641 1034 0.078 1 3.50 99.90 0.085 4.59 6.48 5.0 2745 808 0.085 1 3.40 99.40 0.096 6.48 27.338 4.6 1474 472 0.096 1 3.10 96.90 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other data extraction PDB sw-help@rcsb.rutgers.edu July 2, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.000 data collection MAR345 CCD data reduction MOSFLM Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution 1 N N 2 N N 2 N N 2 N N 3 N N A THR 38 A THR 39 HELX_P A ALA 45 A ALA 46 5 1 8 A ASP 46 A ASP 47 HELX_P A LYS 53 A LYS 54 1 2 8 A ASP 81 A ASP 82 HELX_P A ASN 96 A ASN 97 1 3 16 A SER 107 A SER 108 HELX_P A TYR 120 A TYR 121 1 4 14 A VAL 135 A VAL 136 HELX_P A SER 137 A SER 138 5 5 3 A LEU 138 A LEU 139 HELX_P A LYS 143 A LYS 144 1 6 6 A PRO 161 A PRO 162 HELX_P A ILE 172 A ILE 173 1 7 12 A PRO 186 A PRO 187 HELX_P A LYS 191 A LYS 192 1 8 6 A LYS 191 A LYS 192 HELX_P A ASN 205 A ASN 206 1 9 15 covale 1.340 both A GLY 0 A C GLY 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.333 both A MSE 1 A C MSE 2 1_555 A ALA 2 A N ALA 3 1_555 covale 1.327 both A LYS 19 A C LYS 20 1_555 A MSE 20 A N MSE 21 1_555 covale 1.321 both A MSE 20 A C MSE 21 1_555 A VAL 21 A N VAL 22 1_555 covale 1.340 both A SER 39 A C SER 40 1_555 A MSE 40 A N MSE 41 1_555 covale 1.327 both A MSE 40 A C MSE 41 1_555 A ASP 41 A N ASP 42 1_555 covale 1.325 both A A ILE 103 A C ILE 104 1_555 A MSE 104 A N MSE 105 1_555 covale 1.333 both B A ILE 103 A C ILE 104 1_555 A MSE 104 A N MSE 105 1_555 covale 1.326 both A A MSE 104 A C MSE 105 1_555 A GLY 105 A N GLY 106 1_555 covale 1.334 both B A MSE 104 A C MSE 105 1_555 A GLY 105 A N GLY 106 1_555 covale 1.329 both A A SER 107 A C SER 108 1_555 A MSE 108 A N MSE 109 1_555 covale 1.342 both B A SER 107 A C SER 108 1_555 A MSE 108 A N MSE 109 1_555 covale 1.342 both A A MSE 108 A C MSE 109 1_555 A GLY 109 A N GLY 110 1_555 covale 1.331 both B A MSE 108 A C MSE 109 1_555 A GLY 109 A N GLY 110 1_555 covale 1.328 both A GLY 111 A C GLY 112 1_555 A MSE 112 A N MSE 113 1_555 covale 1.342 both A MSE 112 A C MSE 113 1_555 A VAL 113 A N VAL 114 1_555 covale 1.324 both A ILE 114 A C ILE 115 1_555 A MSE 115 A N MSE 116 1_555 covale 1.319 both A MSE 115 A C MSE 116 1_555 A THR 116 A N THR 117 1_555 covale 1.330 both A ASP 141 A C ASP 142 1_555 A MSE 142 A N MSE 143 1_555 covale 1.346 both A MSE 142 A C MSE 143 1_555 A LYS 143 A N LYS 144 1_555 HYDROLASE NP_393672.1, predicted CIB-like hydrolase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE Q9HLN3_THEAC UNP 1 2 Q9HLN3 NGTRVFQRKMVTDSNRRSIALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIR DYLKANGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYAS IISGSRLEIVEGSGHPVYIKKPEEFVRITVDFLRNL 2 197 3BDI 11 206 Q9HLN3 A 1 12 207 1 expression tag GLY 0 3BDI A Q9HLN3 UNP 1 1 variant MSE 1 3BDI A Q9HLN3 UNP 2 1 variant ALA 2 3BDI A Q9HLN3 UNP 3 1 variant LEU 3 3BDI A Q9HLN3 UNP 4 1 variant GLN 4 3BDI A Q9HLN3 UNP 5 1 variant GLU 5 3BDI A Q9HLN3 UNP 6 1 variant GLU 6 3BDI A Q9HLN3 UNP 7 1 variant PHE 7 3BDI A Q9HLN3 UNP 8 1 variant ILE 8 3BDI A Q9HLN3 UNP 9 1 variant ASP 9 3BDI A Q9HLN3 UNP 10 1 variant VAL 10 3BDI A Q9HLN3 UNP 11 1 LYS SEE REMARK 999 GLU 190 3BDI A Q9HLN3 UNP 181 191 8 anti-parallel anti-parallel parallel parallel parallel parallel parallel A GLN 4 A GLN 5 A VAL 10 A VAL 11 A THR 13 A THR 14 A MSE 20 A MSE 21 A TYR 56 A TYR 57 A PRO 61 A PRO 62 A ARG 27 A ARG 28 A PHE 32 A PHE 33 A SER 101 A SER 102 A ALA 106 A ALA 107 A VAL 124 A VAL 125 A VAL 130 A VAL 131 A THR 149 A THR 150 A GLY 154 A GLY 155 A ARG 176 A ARG 177 A VAL 180 A VAL 181 BINDING SITE FOR RESIDUE PEG A 207 A PEG 207 Software 2 BINDING SITE FOR RESIDUE PEG A 208 A PEG 208 Software 2 BINDING SITE FOR RESIDUE PEG A 209 A PEG 209 Software 6 A ASN 11 A ASN 12 2 1_555 A LYS 74 A LYS 75 2 1_555 A TYR 35 A TYR 36 2 1_555 A GLY 65 A GLY 66 2 1_555 A GLY 67 A GLY 68 6 3_655 A ARG 68 A ARG 69 6 3_655 A GLU 190 A GLU 191 6 1_555 A LYS 191 A LYS 192 6 1_555 A HOH 366 E HOH 6 1_565 A HOH 397 E HOH 6 1_565 19 P 21 21 21