0.013331 0.000000 0.000000 0.000000 0.013331 0.000000 0.000000 0.000000 0.011996 0.00000 0.00000 0.00000 Kuzin, A.P. Su, M. Seetharaman, J. Forouhar, F. Wang, D. Janjua, H. Cunningham, K. Ma, L.-C. Xiao, R. Liu, J. Baran, M.C. Acton, T.B. Rost, B. Montelione, G.T. Tong, L. Hunt, J.F. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 75.014 75.014 83.359 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 The crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-07-06 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 0.97900 1.0 X4A NSLS 0.97900 SYNCHROTRON NSLS BEAMLINE X4A 21877.332 Ycf58 protein 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 1 nat water no yes (MSE)CIG(MSE)DIRDFFAQSAGRWFSQRTSHHLAFKQTESGKSQLTIELLSVDDPAVIALCQQYD(MSE)DPAWAVCG ARVSWDGT(MSE)EWDNEKHEGSTVLVPI(MSE)DQGSR(MSE)EGKLLRE(MSE)GYAEKAPVAGRFS(MSE)GSDGAL TLITEYETIYSEERLWFASPNLRLRTSILKRFGGFS(MSE)ASFCSEIRLGVTQPANSLEHHHHHH MCIGMDIRDFFAQSAGRWFSQRTSHHLAFKQTESGKSQLTIELLSVDDPAVIALCQQYDMDPAWAVCGARVSWDGTMEWD NEKHEGSTVLVPIMDQGSRMEGKLLREMGYAEKAPVAGRFSMGSDGALTLITEYETIYSEERLWFASPNLRLRTSILKRF GGFSMASFCSEIRLGVTQPANSLEHHHHHH A TeR13 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Synechococcus BP-1 Escherichia sample ycf58, tll1699 32046 Synechococcus elongatus 562 Escherichia coli 2.68 54.11 VAPOR DIFFUSION, HANGING DROP 10.0 18% PEG 20000, 0.1M NH4H2PO4, 0.1M CAPS, 20% Glycerol, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative software audit_author citation_author repository Initial release Version format compliance Refinement description Database references Structure summary 1 0 2007-11-27 1 1 2011-07-13 1 2 2017-10-25 1 3 2018-01-24 _software.name _audit_author.name _citation_author.name Y RCSB Y RCSB 2007-11-15 REL REL PO4 PHOSPHATE ION HOH water PO4 201 2 PO4 PO4 201 A HOH 202 3 HOH HOH 202 A n 1 1 A n 2 2 A n 3 3 A GLY 4 n 4 GLY 4 A MSE 5 n 5 MSE 5 A ASP 6 n 6 ASP 6 A ILE 7 n 7 ILE 7 A ARG 8 n 8 ARG 8 A ASP 9 n 9 ASP 9 A PHE 10 n 10 PHE 10 A PHE 11 n 11 PHE 11 A ALA 12 n 12 ALA 12 A GLN 13 n 13 GLN 13 A SER 14 n 14 SER 14 A ALA 15 n 15 ALA 15 A GLY 16 n 16 GLY 16 A ARG 17 n 17 ARG 17 A TRP 18 n 18 TRP 18 A PHE 19 n 19 PHE 19 A SER 20 n 20 SER 20 A GLN 21 n 21 GLN 21 A ARG 22 n 22 ARG 22 A THR 23 n 23 THR 23 A SER 24 n 24 SER 24 A HIS 25 n 25 HIS 25 A HIS 26 n 26 HIS 26 A LEU 27 n 27 LEU 27 A ALA 28 n 28 ALA 28 A PHE 29 n 29 PHE 29 A LYS 30 n 30 LYS 30 A GLN 31 n 31 GLN 31 A THR 32 n 32 THR 32 A GLU 33 n 33 GLU 33 A SER 34 n 34 SER 34 A GLY 35 n 35 GLY 35 A LYS 36 n 36 LYS 36 A SER 37 n 37 SER 37 A GLN 38 n 38 GLN 38 A LEU 39 n 39 LEU 39 A THR 40 n 40 THR 40 A ILE 41 n 41 ILE 41 A GLU 42 n 42 GLU 42 A LEU 43 n 43 LEU 43 A LEU 44 n 44 LEU 44 A SER 45 n 45 SER 45 A VAL 46 n 46 VAL 46 A ASP 47 n 47 ASP 47 A ASP 48 n 48 ASP 48 A PRO 49 n 49 PRO 49 A ALA 50 n 50 ALA 50 A VAL 51 n 51 VAL 51 A ILE 52 n 52 ILE 52 A ALA 53 n 53 ALA 53 A LEU 54 n 54 LEU 54 A CYS 55 n 55 CYS 55 A GLN 56 n 56 GLN 56 A GLN 57 n 57 GLN 57 A TYR 58 n 58 TYR 58 A ASP 59 n 59 ASP 59 A MSE 60 n 60 MSE 60 A ASP 61 n 61 ASP 61 A PRO 62 n 62 PRO 62 A ALA 63 n 63 ALA 63 A TRP 64 n 64 TRP 64 A ALA 65 n 65 ALA 65 A VAL 66 n 66 VAL 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A ALA 69 n 69 ALA 69 A ARG 70 n 70 ARG 70 A VAL 71 n 71 VAL 71 A SER 72 n 72 SER 72 A TRP 73 n 73 TRP 73 A ASP 74 n 74 ASP 74 A GLY 75 n 75 GLY 75 A THR 76 n 76 THR 76 A n 77 77 A n 78 78 A n 79 79 A n 80 80 A n 81 81 A n 82 82 A n 83 83 A HIS 84 n 84 HIS 84 A GLU 85 n 85 GLU 85 A GLY 86 n 86 GLY 86 A SER 87 n 87 SER 87 A THR 88 n 88 THR 88 A VAL 89 n 89 VAL 89 A LEU 90 n 90 LEU 90 A VAL 91 n 91 VAL 91 A PRO 92 n 92 PRO 92 A ILE 93 n 93 ILE 93 A MSE 94 n 94 MSE 94 A ASP 95 n 95 ASP 95 A GLN 96 n 96 GLN 96 A GLY 97 n 97 GLY 97 A SER 98 n 98 SER 98 A ARG 99 n 99 ARG 99 A MSE 100 n 100 MSE 100 A GLU 101 n 101 GLU 101 A GLY 102 n 102 GLY 102 A LYS 103 n 103 LYS 103 A LEU 104 n 104 LEU 104 A LEU 105 n 105 LEU 105 A ARG 106 n 106 ARG 106 A GLU 107 n 107 GLU 107 A n 108 108 A n 109 109 A n 110 110 A n 111 111 A n 112 112 A n 113 113 A n 114 114 A n 115 115 A n 116 116 A n 117 117 A GLY 118 n 118 GLY 118 A ARG 119 n 119 ARG 119 A PHE 120 n 120 PHE 120 A SER 121 n 121 SER 121 A MSE 122 n 122 MSE 122 A GLY 123 n 123 GLY 123 A SER 124 n 124 SER 124 A ASP 125 n 125 ASP 125 A GLY 126 n 126 GLY 126 A ALA 127 n 127 ALA 127 A LEU 128 n 128 LEU 128 A THR 129 n 129 THR 129 A LEU 130 n 130 LEU 130 A ILE 131 n 131 ILE 131 A THR 132 n 132 THR 132 A GLU 133 n 133 GLU 133 A TYR 134 n 134 TYR 134 A GLU 135 n 135 GLU 135 A THR 136 n 136 THR 136 A ILE 137 n 137 ILE 137 A TYR 138 n 138 TYR 138 A SER 139 n 139 SER 139 A GLU 140 n 140 GLU 140 A GLU 141 n 141 GLU 141 A ARG 142 n 142 ARG 142 A LEU 143 n 143 LEU 143 A TRP 144 n 144 TRP 144 A PHE 145 n 145 PHE 145 A ALA 146 n 146 ALA 146 A SER 147 n 147 SER 147 A PRO 148 n 148 PRO 148 A ASN 149 n 149 ASN 149 A LEU 150 n 150 LEU 150 A ARG 151 n 151 ARG 151 A LEU 152 n 152 LEU 152 A ARG 153 n 153 ARG 153 A THR 154 n 154 THR 154 A SER 155 n 155 SER 155 A ILE 156 n 156 ILE 156 A LEU 157 n 157 LEU 157 A LYS 158 n 158 LYS 158 A ARG 159 n 159 ARG 159 A PHE 160 n 160 PHE 160 A GLY 161 n 161 GLY 161 A GLY 162 n 162 GLY 162 A PHE 163 n 163 PHE 163 A SER 164 n 164 SER 164 A MSE 165 n 165 MSE 165 A ALA 166 n 166 ALA 166 A SER 167 n 167 SER 167 A PHE 168 n 168 PHE 168 A CYS 169 n 169 CYS 169 A SER 170 n 170 SER 170 A GLU 171 n 171 GLU 171 A ILE 172 n 172 ILE 172 A ARG 173 n 173 ARG 173 A LEU 174 n 174 LEU 174 A GLY 175 n 175 GLY 175 A VAL 176 n 176 VAL 176 A n 177 177 A n 178 178 A n 179 179 A n 180 180 A n 181 181 A n 182 182 A n 183 183 A n 184 184 A n 185 185 A n 186 186 A n 187 187 A n 188 188 A n 189 189 A n 190 190 A software_defined_assembly PISA 2 dimeric 1980 A MSE 5 SELENOMETHIONINE A MSE 5 MET A MSE 60 SELENOMETHIONINE A MSE 60 MET A MSE 94 SELENOMETHIONINE A MSE 94 MET A MSE 100 SELENOMETHIONINE A MSE 100 MET A MSE 122 SELENOMETHIONINE A MSE 122 MET A MSE 165 SELENOMETHIONINE A MSE 165 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 83.3590000000 A N SER 20 A N SER 20 A O SER 37 A O SER 37 A N THR 40 A N THR 40 A O SER 72 A O SER 72 A N VAL 71 A N VAL 71 A O THR 88 A O THR 88 A N ILE 93 A N ILE 93 A O LYS 103 A O LYS 103 A N GLY 102 A N GLY 102 A O PHE 120 A O PHE 120 A N ARG 119 A N ARG 119 A O ILE 131 A O ILE 131 A N LEU 130 A N LEU 130 A O GLU 141 A O GLU 141 A N TRP 144 A N TRP 144 A O LEU 152 A O LEU 152 A N LEU 157 A N LEU 157 A O SER 164 A O SER 164 A O ALA 166 A O ALA 166 A N HIS 25 A N HIS 25 1 A MSE 1 A MSE 1 1 Y 1 A CYS 2 A CYS 2 1 Y 1 A ILE 3 A ILE 3 1 Y 1 A MSE 77 A MSE 77 1 Y 1 A GLU 78 A GLU 78 1 Y 1 A TRP 79 A TRP 79 1 Y 1 A ASP 80 A ASP 80 1 Y 1 A ASN 81 A ASN 81 1 Y 1 A GLU 82 A GLU 82 1 Y 1 A LYS 83 A LYS 83 1 Y 1 A MSE 108 A MSE 108 1 Y 1 A GLY 109 A GLY 109 1 Y 1 A TYR 110 A TYR 110 1 Y 1 A ALA 111 A ALA 111 1 Y 1 A GLU 112 A GLU 112 1 Y 1 A LYS 113 A LYS 113 1 Y 1 A ALA 114 A ALA 114 1 Y 1 A PRO 115 A PRO 115 1 Y 1 A VAL 116 A VAL 116 1 Y 1 A ALA 117 A ALA 117 1 Y 1 A THR 177 A THR 177 1 Y 1 A GLN 178 A GLN 178 1 Y 1 A PRO 179 A PRO 179 1 Y 1 A ALA 180 A ALA 180 1 Y 1 A ASN 181 A ASN 181 1 Y 1 A SER 182 A SER 182 1 Y 1 A LEU 183 A LEU 183 1 Y 1 A GLU 184 A GLU 184 1 Y 1 A HIS 185 A HIS 185 1 Y 1 A HIS 186 A HIS 186 1 Y 1 A HIS 187 A HIS 187 1 Y 1 A HIS 188 A HIS 188 1 Y 1 A HIS 189 A HIS 189 1 Y 1 A HIS 190 A HIS 190 1 Y 1 A CYS 67 175.22 178.95 1 A ASP 74 -171.58 120.78 1 A TYR 134 -90.23 -83.92 1 A GLU 135 -127.39 -62.71 1 A LEU 174 -86.12 -73.72 protein_rep.param protein.top water.param water.top ion.param ion.top 66.6 -2.62 0.00 0.00 -2.62 0.00 5.24 The Friedel pairs were used in phasing. BULK SOLVENT MODEL USED in refinement 0.262 0.011 0.236 0.236 2.80 19.40 522 10246 5.1 91.7 RANDOM 105173.90 0.000000 1 RESTRAINED THROUGHOUT 1.0 SAD Engh & Huber FLAT MODEL 46.7207 0.35 0.44 0.37 5.00 0.58 0.41 2.80 19.40 1 1231 5 0 1225 0.008 1.4 26.7 0.78 0.395 0.044 0.312 2.97 79 1410 6 5.3 79.9 47.3 2.8 30 3BDR 11252 -3.0 0.081 1 28.2 10.1 99.9 0.691 2.80 2.90 4.6 1113 100 refinement CNS 1.2 data collection ADSC Quantum data reduction HKL-2000 data scaling SCALEPACK phasing SnB N Ycf58 protein Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13. 1 N N 2 N N 3 N N A ASP 6 A ASP 6 HELX_P A ALA 15 A ALA 15 1 1 10 A ASP 48 A ASP 48 HELX_P A TYR 58 A TYR 58 1 2 11 covale 1.336 A GLY 4 A C GLY 4 1_555 A MSE 5 A N MSE 5 1_555 covale 1.337 A MSE 5 A C MSE 5 1_555 A ASP 6 A N ASP 6 1_555 covale 1.331 A ASP 59 A C ASP 59 1_555 A MSE 60 A N MSE 60 1_555 covale 1.328 A MSE 60 A C MSE 60 1_555 A ASP 61 A N ASP 61 1_555 covale 1.327 A ILE 93 A C ILE 93 1_555 A MSE 94 A N MSE 94 1_555 covale 1.327 A MSE 94 A C MSE 94 1_555 A ASP 95 A N ASP 95 1_555 covale 1.331 A ARG 99 A C ARG 99 1_555 A MSE 100 A N MSE 100 1_555 covale 1.324 A MSE 100 A C MSE 100 1_555 A GLU 101 A N GLU 101 1_555 covale 1.324 A SER 121 A C SER 121 1_555 A MSE 122 A N MSE 122 1_555 covale 1.322 A MSE 122 A C MSE 122 1_555 A GLY 123 A N GLY 123 1_555 covale 1.323 A SER 164 A C SER 164 1_555 A MSE 165 A N MSE 165 1_555 covale 1.330 A MSE 165 A C MSE 165 1_555 A ALA 166 A N ALA 166 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION NESG, Ycf58, Q8DI91, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION Q8DI91_SYNEL UNP 1 1 Q8DI91 MCIGMDIRDFFAQSAGRWFSQRTSHHLAFKQTESGKSQLTIELLSVDDPAVIALCQQYDMDPAWAVCGARVSWDGTMEWD NEKHEGSTVLVPIMDQGSRMEGKLLREMGYAEKAPVAGRFSMGSDGALTLITEYETIYSEERLWFASPNLRLRTSILKRF GGFSMASFCSEIRLGVTQPANS 1 182 3BDR 1 182 Q8DI91 A 1 1 182 1 EXPRESSION TAG LEU 183 3BDR A Q8DI91 UNP 183 1 EXPRESSION TAG GLU 184 3BDR A Q8DI91 UNP 184 1 EXPRESSION TAG HIS 185 3BDR A Q8DI91 UNP 185 1 EXPRESSION TAG HIS 186 3BDR A Q8DI91 UNP 186 1 EXPRESSION TAG HIS 187 3BDR A Q8DI91 UNP 187 1 EXPRESSION TAG HIS 188 3BDR A Q8DI91 UNP 188 1 EXPRESSION TAG HIS 189 3BDR A Q8DI91 UNP 189 1 EXPRESSION TAG HIS 190 3BDR A Q8DI91 UNP 190 11 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 16 A GLY 16 A HIS 26 A HIS 26 A GLN 31 A GLN 31 A LEU 44 A LEU 44 A GLY 68 A GLY 68 A ASP 74 A ASP 74 A GLU 85 A GLU 85 A MSE 94 A MSE 94 A GLU 101 A GLU 101 A ARG 106 A ARG 106 A ARG 119 A ARG 119 A MSE 122 A MSE 122 A LEU 128 A LEU 128 A GLU 133 A GLU 133 A TYR 138 A TYR 138 A SER 147 A SER 147 A LEU 150 A LEU 150 A ARG 159 A ARG 159 A GLY 162 A GLY 162 A ARG 173 A ARG 173 A GLY 16 A GLY 16 A HIS 26 A HIS 26 BINDING SITE FOR RESIDUE PO4 A 201 Software 2 A SER 14 A SER 14 2 1_555 A ARG 151 A ARG 151 2 1_555 92 P 41 21 2