0.013331
0.000000
0.000000
0.000000
0.013331
0.000000
0.000000
0.000000
0.011996
0.00000
0.00000
0.00000
Kuzin, A.P.
Su, M.
Seetharaman, J.
Forouhar, F.
Wang, D.
Janjua, H.
Cunningham, K.
Ma, L.-C.
Xiao, R.
Liu, J.
Baran, M.C.
Acton, T.B.
Rost, B.
Montelione, G.T.
Tong, L.
Hunt, J.F.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
75.014
75.014
83.359
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus.
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-07-06
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.97900
1.0
X4A
NSLS
0.97900
SYNCHROTRON
NSLS BEAMLINE X4A
21877.332
Ycf58 protein
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
1
nat
water
no
yes
(MSE)CIG(MSE)DIRDFFAQSAGRWFSQRTSHHLAFKQTESGKSQLTIELLSVDDPAVIALCQQYD(MSE)DPAWAVCG
ARVSWDGT(MSE)EWDNEKHEGSTVLVPI(MSE)DQGSR(MSE)EGKLLRE(MSE)GYAEKAPVAGRFS(MSE)GSDGAL
TLITEYETIYSEERLWFASPNLRLRTSILKRFGGFS(MSE)ASFCSEIRLGVTQPANSLEHHHHHH
MCIGMDIRDFFAQSAGRWFSQRTSHHLAFKQTESGKSQLTIELLSVDDPAVIALCQQYDMDPAWAVCGARVSWDGTMEWD
NEKHEGSTVLVPIMDQGSRMEGKLLREMGYAEKAPVAGRFSMGSDGALTLITEYETIYSEERLWFASPNLRLRTSILKRF
GGFSMASFCSEIRLGVTQPANSLEHHHHHH
A
TeR13
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Synechococcus
BP-1
Escherichia
sample
ycf58, tll1699
32046
Synechococcus elongatus
562
Escherichia coli
2.68
54.11
VAPOR DIFFUSION, HANGING DROP
10.0
18% PEG 20000, 0.1M NH4H2PO4, 0.1M CAPS, 20% Glycerol, pH 10.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
software
audit_author
citation_author
repository
Initial release
Version format compliance
Refinement description
Database references
Structure summary
1
0
2007-11-27
1
1
2011-07-13
1
2
2017-10-25
1
3
2018-01-24
_software.name
_audit_author.name
_citation_author.name
Y
RCSB
Y
RCSB
2007-11-15
REL
REL
PO4
PHOSPHATE ION
HOH
water
PO4
201
2
PO4
PO4
201
A
HOH
202
3
HOH
HOH
202
A
n
1
1
A
n
2
2
A
n
3
3
A
GLY
4
n
4
GLY
4
A
MSE
5
n
5
MSE
5
A
ASP
6
n
6
ASP
6
A
ILE
7
n
7
ILE
7
A
ARG
8
n
8
ARG
8
A
ASP
9
n
9
ASP
9
A
PHE
10
n
10
PHE
10
A
PHE
11
n
11
PHE
11
A
ALA
12
n
12
ALA
12
A
GLN
13
n
13
GLN
13
A
SER
14
n
14
SER
14
A
ALA
15
n
15
ALA
15
A
GLY
16
n
16
GLY
16
A
ARG
17
n
17
ARG
17
A
TRP
18
n
18
TRP
18
A
PHE
19
n
19
PHE
19
A
SER
20
n
20
SER
20
A
GLN
21
n
21
GLN
21
A
ARG
22
n
22
ARG
22
A
THR
23
n
23
THR
23
A
SER
24
n
24
SER
24
A
HIS
25
n
25
HIS
25
A
HIS
26
n
26
HIS
26
A
LEU
27
n
27
LEU
27
A
ALA
28
n
28
ALA
28
A
PHE
29
n
29
PHE
29
A
LYS
30
n
30
LYS
30
A
GLN
31
n
31
GLN
31
A
THR
32
n
32
THR
32
A
GLU
33
n
33
GLU
33
A
SER
34
n
34
SER
34
A
GLY
35
n
35
GLY
35
A
LYS
36
n
36
LYS
36
A
SER
37
n
37
SER
37
A
GLN
38
n
38
GLN
38
A
LEU
39
n
39
LEU
39
A
THR
40
n
40
THR
40
A
ILE
41
n
41
ILE
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
LEU
44
n
44
LEU
44
A
SER
45
n
45
SER
45
A
VAL
46
n
46
VAL
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
PRO
49
n
49
PRO
49
A
ALA
50
n
50
ALA
50
A
VAL
51
n
51
VAL
51
A
ILE
52
n
52
ILE
52
A
ALA
53
n
53
ALA
53
A
LEU
54
n
54
LEU
54
A
CYS
55
n
55
CYS
55
A
GLN
56
n
56
GLN
56
A
GLN
57
n
57
GLN
57
A
TYR
58
n
58
TYR
58
A
ASP
59
n
59
ASP
59
A
MSE
60
n
60
MSE
60
A
ASP
61
n
61
ASP
61
A
PRO
62
n
62
PRO
62
A
ALA
63
n
63
ALA
63
A
TRP
64
n
64
TRP
64
A
ALA
65
n
65
ALA
65
A
VAL
66
n
66
VAL
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
ALA
69
n
69
ALA
69
A
ARG
70
n
70
ARG
70
A
VAL
71
n
71
VAL
71
A
SER
72
n
72
SER
72
A
TRP
73
n
73
TRP
73
A
ASP
74
n
74
ASP
74
A
GLY
75
n
75
GLY
75
A
THR
76
n
76
THR
76
A
n
77
77
A
n
78
78
A
n
79
79
A
n
80
80
A
n
81
81
A
n
82
82
A
n
83
83
A
HIS
84
n
84
HIS
84
A
GLU
85
n
85
GLU
85
A
GLY
86
n
86
GLY
86
A
SER
87
n
87
SER
87
A
THR
88
n
88
THR
88
A
VAL
89
n
89
VAL
89
A
LEU
90
n
90
LEU
90
A
VAL
91
n
91
VAL
91
A
PRO
92
n
92
PRO
92
A
ILE
93
n
93
ILE
93
A
MSE
94
n
94
MSE
94
A
ASP
95
n
95
ASP
95
A
GLN
96
n
96
GLN
96
A
GLY
97
n
97
GLY
97
A
SER
98
n
98
SER
98
A
ARG
99
n
99
ARG
99
A
MSE
100
n
100
MSE
100
A
GLU
101
n
101
GLU
101
A
GLY
102
n
102
GLY
102
A
LYS
103
n
103
LYS
103
A
LEU
104
n
104
LEU
104
A
LEU
105
n
105
LEU
105
A
ARG
106
n
106
ARG
106
A
GLU
107
n
107
GLU
107
A
n
108
108
A
n
109
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
n
114
114
A
n
115
115
A
n
116
116
A
n
117
117
A
GLY
118
n
118
GLY
118
A
ARG
119
n
119
ARG
119
A
PHE
120
n
120
PHE
120
A
SER
121
n
121
SER
121
A
MSE
122
n
122
MSE
122
A
GLY
123
n
123
GLY
123
A
SER
124
n
124
SER
124
A
ASP
125
n
125
ASP
125
A
GLY
126
n
126
GLY
126
A
ALA
127
n
127
ALA
127
A
LEU
128
n
128
LEU
128
A
THR
129
n
129
THR
129
A
LEU
130
n
130
LEU
130
A
ILE
131
n
131
ILE
131
A
THR
132
n
132
THR
132
A
GLU
133
n
133
GLU
133
A
TYR
134
n
134
TYR
134
A
GLU
135
n
135
GLU
135
A
THR
136
n
136
THR
136
A
ILE
137
n
137
ILE
137
A
TYR
138
n
138
TYR
138
A
SER
139
n
139
SER
139
A
GLU
140
n
140
GLU
140
A
GLU
141
n
141
GLU
141
A
ARG
142
n
142
ARG
142
A
LEU
143
n
143
LEU
143
A
TRP
144
n
144
TRP
144
A
PHE
145
n
145
PHE
145
A
ALA
146
n
146
ALA
146
A
SER
147
n
147
SER
147
A
PRO
148
n
148
PRO
148
A
ASN
149
n
149
ASN
149
A
LEU
150
n
150
LEU
150
A
ARG
151
n
151
ARG
151
A
LEU
152
n
152
LEU
152
A
ARG
153
n
153
ARG
153
A
THR
154
n
154
THR
154
A
SER
155
n
155
SER
155
A
ILE
156
n
156
ILE
156
A
LEU
157
n
157
LEU
157
A
LYS
158
n
158
LYS
158
A
ARG
159
n
159
ARG
159
A
PHE
160
n
160
PHE
160
A
GLY
161
n
161
GLY
161
A
GLY
162
n
162
GLY
162
A
PHE
163
n
163
PHE
163
A
SER
164
n
164
SER
164
A
MSE
165
n
165
MSE
165
A
ALA
166
n
166
ALA
166
A
SER
167
n
167
SER
167
A
PHE
168
n
168
PHE
168
A
CYS
169
n
169
CYS
169
A
SER
170
n
170
SER
170
A
GLU
171
n
171
GLU
171
A
ILE
172
n
172
ILE
172
A
ARG
173
n
173
ARG
173
A
LEU
174
n
174
LEU
174
A
GLY
175
n
175
GLY
175
A
VAL
176
n
176
VAL
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
n
187
187
A
n
188
188
A
n
189
189
A
n
190
190
A
software_defined_assembly
PISA
2
dimeric
1980
A
MSE
5
SELENOMETHIONINE
A
MSE
5
MET
A
MSE
60
SELENOMETHIONINE
A
MSE
60
MET
A
MSE
94
SELENOMETHIONINE
A
MSE
94
MET
A
MSE
100
SELENOMETHIONINE
A
MSE
100
MET
A
MSE
122
SELENOMETHIONINE
A
MSE
122
MET
A
MSE
165
SELENOMETHIONINE
A
MSE
165
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
83.3590000000
A
N
SER
20
A
N
SER
20
A
O
SER
37
A
O
SER
37
A
N
THR
40
A
N
THR
40
A
O
SER
72
A
O
SER
72
A
N
VAL
71
A
N
VAL
71
A
O
THR
88
A
O
THR
88
A
N
ILE
93
A
N
ILE
93
A
O
LYS
103
A
O
LYS
103
A
N
GLY
102
A
N
GLY
102
A
O
PHE
120
A
O
PHE
120
A
N
ARG
119
A
N
ARG
119
A
O
ILE
131
A
O
ILE
131
A
N
LEU
130
A
N
LEU
130
A
O
GLU
141
A
O
GLU
141
A
N
TRP
144
A
N
TRP
144
A
O
LEU
152
A
O
LEU
152
A
N
LEU
157
A
N
LEU
157
A
O
SER
164
A
O
SER
164
A
O
ALA
166
A
O
ALA
166
A
N
HIS
25
A
N
HIS
25
1
A
MSE
1
A
MSE
1
1
Y
1
A
CYS
2
A
CYS
2
1
Y
1
A
ILE
3
A
ILE
3
1
Y
1
A
MSE
77
A
MSE
77
1
Y
1
A
GLU
78
A
GLU
78
1
Y
1
A
TRP
79
A
TRP
79
1
Y
1
A
ASP
80
A
ASP
80
1
Y
1
A
ASN
81
A
ASN
81
1
Y
1
A
GLU
82
A
GLU
82
1
Y
1
A
LYS
83
A
LYS
83
1
Y
1
A
MSE
108
A
MSE
108
1
Y
1
A
GLY
109
A
GLY
109
1
Y
1
A
TYR
110
A
TYR
110
1
Y
1
A
ALA
111
A
ALA
111
1
Y
1
A
GLU
112
A
GLU
112
1
Y
1
A
LYS
113
A
LYS
113
1
Y
1
A
ALA
114
A
ALA
114
1
Y
1
A
PRO
115
A
PRO
115
1
Y
1
A
VAL
116
A
VAL
116
1
Y
1
A
ALA
117
A
ALA
117
1
Y
1
A
THR
177
A
THR
177
1
Y
1
A
GLN
178
A
GLN
178
1
Y
1
A
PRO
179
A
PRO
179
1
Y
1
A
ALA
180
A
ALA
180
1
Y
1
A
ASN
181
A
ASN
181
1
Y
1
A
SER
182
A
SER
182
1
Y
1
A
LEU
183
A
LEU
183
1
Y
1
A
GLU
184
A
GLU
184
1
Y
1
A
HIS
185
A
HIS
185
1
Y
1
A
HIS
186
A
HIS
186
1
Y
1
A
HIS
187
A
HIS
187
1
Y
1
A
HIS
188
A
HIS
188
1
Y
1
A
HIS
189
A
HIS
189
1
Y
1
A
HIS
190
A
HIS
190
1
Y
1
A
CYS
67
175.22
178.95
1
A
ASP
74
-171.58
120.78
1
A
TYR
134
-90.23
-83.92
1
A
GLU
135
-127.39
-62.71
1
A
LEU
174
-86.12
-73.72
protein_rep.param
protein.top
water.param
water.top
ion.param
ion.top
66.6
-2.62
0.00
0.00
-2.62
0.00
5.24
The Friedel pairs were used in phasing. BULK SOLVENT MODEL USED in refinement
0.262
0.011
0.236
0.236
2.80
19.40
522
10246
5.1
91.7
RANDOM
105173.90
0.000000
1
RESTRAINED
THROUGHOUT
1.0
SAD
Engh & Huber
FLAT MODEL
46.7207
0.35
0.44
0.37
5.00
0.58
0.41
2.80
19.40
1
1231
5
0
1225
0.008
1.4
26.7
0.78
0.395
0.044
0.312
2.97
79
1410
6
5.3
79.9
47.3
2.8
30
3BDR
11252
-3.0
0.081
1
28.2
10.1
99.9
0.691
2.80
2.90
4.6
1113
100
refinement
CNS
1.2
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SnB
N
Ycf58 protein
Crystal structure of fatty acid-binding protein-like Ycf58 from Thermosynecoccus elongatus. Northeast Structural Genomics Consortium target TeR13.
1
N
N
2
N
N
3
N
N
A
ASP
6
A
ASP
6
HELX_P
A
ALA
15
A
ALA
15
1
1
10
A
ASP
48
A
ASP
48
HELX_P
A
TYR
58
A
TYR
58
1
2
11
covale
1.336
A
GLY
4
A
C
GLY
4
1_555
A
MSE
5
A
N
MSE
5
1_555
covale
1.337
A
MSE
5
A
C
MSE
5
1_555
A
ASP
6
A
N
ASP
6
1_555
covale
1.331
A
ASP
59
A
C
ASP
59
1_555
A
MSE
60
A
N
MSE
60
1_555
covale
1.328
A
MSE
60
A
C
MSE
60
1_555
A
ASP
61
A
N
ASP
61
1_555
covale
1.327
A
ILE
93
A
C
ILE
93
1_555
A
MSE
94
A
N
MSE
94
1_555
covale
1.327
A
MSE
94
A
C
MSE
94
1_555
A
ASP
95
A
N
ASP
95
1_555
covale
1.331
A
ARG
99
A
C
ARG
99
1_555
A
MSE
100
A
N
MSE
100
1_555
covale
1.324
A
MSE
100
A
C
MSE
100
1_555
A
GLU
101
A
N
GLU
101
1_555
covale
1.324
A
SER
121
A
C
SER
121
1_555
A
MSE
122
A
N
MSE
122
1_555
covale
1.322
A
MSE
122
A
C
MSE
122
1_555
A
GLY
123
A
N
GLY
123
1_555
covale
1.323
A
SER
164
A
C
SER
164
1_555
A
MSE
165
A
N
MSE
165
1_555
covale
1.330
A
MSE
165
A
C
MSE
165
1_555
A
ALA
166
A
N
ALA
166
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
NESG, Ycf58, Q8DI91, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION
Q8DI91_SYNEL
UNP
1
1
Q8DI91
MCIGMDIRDFFAQSAGRWFSQRTSHHLAFKQTESGKSQLTIELLSVDDPAVIALCQQYDMDPAWAVCGARVSWDGTMEWD
NEKHEGSTVLVPIMDQGSRMEGKLLREMGYAEKAPVAGRFSMGSDGALTLITEYETIYSEERLWFASPNLRLRTSILKRF
GGFSMASFCSEIRLGVTQPANS
1
182
3BDR
1
182
Q8DI91
A
1
1
182
1
EXPRESSION TAG
LEU
183
3BDR
A
Q8DI91
UNP
183
1
EXPRESSION TAG
GLU
184
3BDR
A
Q8DI91
UNP
184
1
EXPRESSION TAG
HIS
185
3BDR
A
Q8DI91
UNP
185
1
EXPRESSION TAG
HIS
186
3BDR
A
Q8DI91
UNP
186
1
EXPRESSION TAG
HIS
187
3BDR
A
Q8DI91
UNP
187
1
EXPRESSION TAG
HIS
188
3BDR
A
Q8DI91
UNP
188
1
EXPRESSION TAG
HIS
189
3BDR
A
Q8DI91
UNP
189
1
EXPRESSION TAG
HIS
190
3BDR
A
Q8DI91
UNP
190
11
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
16
A
GLY
16
A
HIS
26
A
HIS
26
A
GLN
31
A
GLN
31
A
LEU
44
A
LEU
44
A
GLY
68
A
GLY
68
A
ASP
74
A
ASP
74
A
GLU
85
A
GLU
85
A
MSE
94
A
MSE
94
A
GLU
101
A
GLU
101
A
ARG
106
A
ARG
106
A
ARG
119
A
ARG
119
A
MSE
122
A
MSE
122
A
LEU
128
A
LEU
128
A
GLU
133
A
GLU
133
A
TYR
138
A
TYR
138
A
SER
147
A
SER
147
A
LEU
150
A
LEU
150
A
ARG
159
A
ARG
159
A
GLY
162
A
GLY
162
A
ARG
173
A
ARG
173
A
GLY
16
A
GLY
16
A
HIS
26
A
HIS
26
BINDING SITE FOR RESIDUE PO4 A 201
Software
2
A
SER
14
A
SER
14
2
1_555
A
ARG
151
A
ARG
151
2
1_555
92
P 41 21 2