0.010169 0.005871 0.000000 0.000000 0.011742 0.000000 0.000000 0.000000 0.012293 0.000000 0.000000 0.000000 Jacobs, M.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 98.340 98.340 81.350 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H8 N O6 P 185.072 n PHOSPHOSERINE PHOSPHONOSERINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C18 H18 F3 N5 361.364 N-cyclohexyl-3-[3-(trifluoromethyl)phenyl][1,2,4]triazolo[4,3-b]pyridazin-6-amine non-polymer US J.Med.Chem. JMCMAR 0151 0022-2623 51 1972 1975 10.1021/jm701248t 18290603 Docking study yields four novel inhibitors of the protooncogene pim-1 kinase. 2008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 110 1 CCD 2005-05-31 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 5.0.1 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.1 37984.074 Proto-oncogene serine/threonine-protein kinase Pim-1 2.7.11.1 kinase domain residues 92-404 1 man polymer 361.364 N-cyclohexyl-3-[3-(trifluoromethyl)phenyl][1,2,4]triazolo[4,3-b]pyridazin-6-amine 1 syn non-polymer 18.015 water 112 nat water no yes MGSSHHHHHHSSGLVPRGSHMLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSD NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQ EELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHG RSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS(SEP)ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLP QETAEIHLHSLSPGPSK MGSSHHHHHHSSGLVPRGSHMLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSD NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQ EELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHG RSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETA EIHLHSLSPGPSK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample PIM1 9606 Homo sapiens 562 Escherichia coli BL21/DE3 pLysS plasmid pBEV1 1 2.99 58.86 VAPOR DIFFUSION, HANGING DROP 5.5 1 M ammonium phosphate dibasic, 100 mM citrate, 200 mM NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 repository Initial release Version format compliance 1 0 2007-12-11 1 1 2011-07-13 Same protein complexed withg inhibitor VX1 Same protein complexed withg inhibitor VX3 RCSB Y RCSB 2007-11-27 REL REL VX2 N-cyclohexyl-3-[3-(trifluoromethyl)phenyl][1,2,4]triazolo[4,3-b]pyridazin-6-amine HOH water VX2 1 2 VX2 VX2 314 A HOH 156 3 HOH HOH 315 A HOH 157 3 HOH HOH 316 A HOH 158 3 HOH HOH 317 A HOH 159 3 HOH HOH 318 A HOH 160 3 HOH HOH 319 A HOH 161 3 HOH HOH 320 A HOH 162 3 HOH HOH 321 A HOH 163 3 HOH HOH 322 A HOH 164 3 HOH HOH 323 A HOH 165 3 HOH HOH 324 A HOH 166 3 HOH HOH 325 A HOH 167 3 HOH HOH 326 A HOH 168 3 HOH HOH 327 A HOH 169 3 HOH HOH 328 A HOH 170 3 HOH HOH 329 A HOH 171 3 HOH HOH 330 A HOH 172 3 HOH HOH 331 A HOH 173 3 HOH HOH 332 A HOH 174 3 HOH HOH 333 A HOH 175 3 HOH HOH 334 A HOH 176 3 HOH HOH 335 A HOH 177 3 HOH HOH 336 A HOH 178 3 HOH HOH 337 A HOH 179 3 HOH HOH 338 A HOH 180 3 HOH HOH 339 A HOH 181 3 HOH HOH 340 A HOH 182 3 HOH HOH 341 A HOH 183 3 HOH HOH 342 A HOH 184 3 HOH HOH 343 A HOH 185 3 HOH HOH 344 A HOH 186 3 HOH HOH 345 A HOH 187 3 HOH HOH 346 A HOH 188 3 HOH HOH 347 A HOH 189 3 HOH HOH 348 A HOH 190 3 HOH HOH 349 A HOH 191 3 HOH HOH 350 A HOH 192 3 HOH HOH 351 A HOH 193 3 HOH HOH 352 A HOH 194 3 HOH HOH 353 A HOH 195 3 HOH HOH 354 A HOH 196 3 HOH HOH 355 A HOH 197 3 HOH HOH 356 A HOH 198 3 HOH HOH 357 A HOH 199 3 HOH HOH 358 A HOH 200 3 HOH HOH 359 A HOH 201 3 HOH HOH 360 A HOH 202 3 HOH HOH 361 A HOH 203 3 HOH HOH 362 A HOH 204 3 HOH HOH 363 A HOH 205 3 HOH HOH 364 A HOH 206 3 HOH HOH 365 A HOH 207 3 HOH HOH 366 A HOH 208 3 HOH HOH 367 A HOH 209 3 HOH HOH 368 A HOH 210 3 HOH HOH 369 A HOH 211 3 HOH HOH 370 A HOH 212 3 HOH HOH 371 A HOH 213 3 HOH HOH 372 A HOH 214 3 HOH HOH 373 A HOH 215 3 HOH HOH 374 A HOH 216 3 HOH HOH 375 A HOH 217 3 HOH HOH 376 A HOH 218 3 HOH HOH 377 A HOH 219 3 HOH HOH 378 A HOH 220 3 HOH HOH 379 A HOH 221 3 HOH HOH 380 A HOH 222 3 HOH HOH 381 A HOH 223 3 HOH HOH 382 A HOH 224 3 HOH HOH 383 A HOH 225 3 HOH HOH 384 A HOH 226 3 HOH HOH 385 A HOH 227 3 HOH HOH 386 A HOH 228 3 HOH HOH 387 A HOH 229 3 HOH HOH 388 A HOH 230 3 HOH HOH 389 A HOH 231 3 HOH HOH 390 A HOH 232 3 HOH HOH 391 A HOH 233 3 HOH HOH 392 A HOH 234 3 HOH HOH 393 A HOH 235 3 HOH HOH 394 A HOH 236 3 HOH HOH 395 A HOH 237 3 HOH HOH 396 A HOH 238 3 HOH HOH 397 A HOH 239 3 HOH HOH 398 A HOH 240 3 HOH HOH 399 A HOH 241 3 HOH HOH 400 A HOH 242 3 HOH HOH 401 A HOH 243 3 HOH HOH 402 A HOH 244 3 HOH HOH 403 A HOH 245 3 HOH HOH 404 A HOH 246 3 HOH HOH 405 A HOH 247 3 HOH HOH 406 A HOH 248 3 HOH HOH 407 A HOH 249 3 HOH HOH 408 A HOH 250 3 HOH HOH 409 A HOH 251 3 HOH HOH 410 A HOH 252 3 HOH HOH 411 A HOH 253 3 HOH HOH 412 A HOH 254 3 HOH HOH 413 A HOH 255 3 HOH HOH 414 A HOH 256 3 HOH HOH 415 A HOH 257 3 HOH HOH 416 A HOH 258 3 HOH HOH 417 A HOH 259 3 HOH HOH 418 A HOH 260 3 HOH HOH 419 A HOH 261 3 HOH HOH 420 A HOH 262 3 HOH HOH 421 A HOH 263 3 HOH HOH 422 A HOH 264 3 HOH HOH 423 A HOH 265 3 HOH HOH 424 A HOH 266 3 HOH HOH 425 A HOH 267 3 HOH HOH 426 A n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A n 20 0 A n 21 1 A n 22 2 A n 23 3 A n 24 4 A n 25 5 A n 26 6 A n 27 7 A n 28 8 A n 29 9 A n 30 10 A n 31 11 A n 32 12 A n 33 13 A n 34 14 A n 35 15 A n 36 16 A n 37 17 A n 38 18 A n 39 19 A n 40 20 A n 41 21 A n 42 22 A n 43 23 A n 44 24 A n 45 25 A n 46 26 A n 47 27 A n 48 28 A n 49 29 A n 50 30 A n 51 31 A n 52 32 A PRO 33 n 53 PRO 33 A LEU 34 n 54 LEU 34 A GLU 35 n 55 GLU 35 A SER 36 n 56 SER 36 A GLN 37 n 57 GLN 37 A TYR 38 n 58 TYR 38 A GLN 39 n 59 GLN 39 A VAL 40 n 60 VAL 40 A GLY 41 n 61 GLY 41 A PRO 42 n 62 PRO 42 A LEU 43 n 63 LEU 43 A LEU 44 n 64 LEU 44 A GLY 45 n 65 GLY 45 A SER 46 n 66 SER 46 A GLY 47 n 67 GLY 47 A GLY 48 n 68 GLY 48 A PHE 49 n 69 PHE 49 A GLY 50 n 70 GLY 50 A SER 51 n 71 SER 51 A VAL 52 n 72 VAL 52 A TYR 53 n 73 TYR 53 A SER 54 n 74 SER 54 A GLY 55 n 75 GLY 55 A ILE 56 n 76 ILE 56 A ARG 57 n 77 ARG 57 A VAL 58 n 78 VAL 58 A SER 59 n 79 SER 59 A ASP 60 n 80 ASP 60 A ASN 61 n 81 ASN 61 A LEU 62 n 82 LEU 62 A PRO 63 n 83 PRO 63 A VAL 64 n 84 VAL 64 A ALA 65 n 85 ALA 65 A ILE 66 n 86 ILE 66 A LYS 67 n 87 LYS 67 A HIS 68 n 88 HIS 68 A VAL 69 n 89 VAL 69 A GLU 70 n 90 GLU 70 A LYS 71 n 91 LYS 71 A ASP 72 n 92 ASP 72 A ARG 73 n 93 ARG 73 A ILE 74 n 94 ILE 74 A SER 75 n 95 SER 75 A ASP 76 n 96 ASP 76 A TRP 77 n 97 TRP 77 A GLY 78 n 98 GLY 78 A GLU 79 n 99 GLU 79 A LEU 80 n 100 LEU 80 A PRO 81 n 101 PRO 81 A ASN 82 n 102 ASN 82 A GLY 83 n 103 GLY 83 A THR 84 n 104 THR 84 A ARG 85 n 105 ARG 85 A VAL 86 n 106 VAL 86 A PRO 87 n 107 PRO 87 A MET 88 n 108 MET 88 A GLU 89 n 109 GLU 89 A VAL 90 n 110 VAL 90 A VAL 91 n 111 VAL 91 A LEU 92 n 112 LEU 92 A LEU 93 n 113 LEU 93 A LYS 94 n 114 LYS 94 A LYS 95 n 115 LYS 95 A VAL 96 n 116 VAL 96 A SER 97 n 117 SER 97 A SER 98 n 118 SER 98 A GLY 99 n 119 GLY 99 A PHE 100 n 120 PHE 100 A SER 101 n 121 SER 101 A GLY 102 n 122 GLY 102 A VAL 103 n 123 VAL 103 A ILE 104 n 124 ILE 104 A ARG 105 n 125 ARG 105 A LEU 106 n 126 LEU 106 A LEU 107 n 127 LEU 107 A ASP 108 n 128 ASP 108 A TRP 109 n 129 TRP 109 A PHE 110 n 130 PHE 110 A GLU 111 n 131 GLU 111 A ARG 112 n 132 ARG 112 A PRO 113 n 133 PRO 113 A ASP 114 n 134 ASP 114 A SER 115 n 135 SER 115 A PHE 116 n 136 PHE 116 A VAL 117 n 137 VAL 117 A LEU 118 n 138 LEU 118 A ILE 119 n 139 ILE 119 A LEU 120 n 140 LEU 120 A GLU 121 n 141 GLU 121 A ARG 122 n 142 ARG 122 A PRO 123 n 143 PRO 123 A GLU 124 n 144 GLU 124 A PRO 125 n 145 PRO 125 A VAL 126 n 146 VAL 126 A GLN 127 n 147 GLN 127 A ASP 128 n 148 ASP 128 A LEU 129 n 149 LEU 129 A PHE 130 n 150 PHE 130 A ASP 131 n 151 ASP 131 A PHE 132 n 152 PHE 132 A ILE 133 n 153 ILE 133 A THR 134 n 154 THR 134 A GLU 135 n 155 GLU 135 A ARG 136 n 156 ARG 136 A GLY 137 n 157 GLY 137 A ALA 138 n 158 ALA 138 A LEU 139 n 159 LEU 139 A GLN 140 n 160 GLN 140 A GLU 141 n 161 GLU 141 A GLU 142 n 162 GLU 142 A LEU 143 n 163 LEU 143 A ALA 144 n 164 ALA 144 A ARG 145 n 165 ARG 145 A SER 146 n 166 SER 146 A PHE 147 n 167 PHE 147 A PHE 148 n 168 PHE 148 A TRP 149 n 169 TRP 149 A GLN 150 n 170 GLN 150 A VAL 151 n 171 VAL 151 A LEU 152 n 172 LEU 152 A GLU 153 n 173 GLU 153 A ALA 154 n 174 ALA 154 A VAL 155 n 175 VAL 155 A ARG 156 n 176 ARG 156 A HIS 157 n 177 HIS 157 A CYS 158 n 178 CYS 158 A HIS 159 n 179 HIS 159 A ASN 160 n 180 ASN 160 A CYS 161 n 181 CYS 161 A GLY 162 n 182 GLY 162 A VAL 163 n 183 VAL 163 A LEU 164 n 184 LEU 164 A HIS 165 n 185 HIS 165 A ARG 166 n 186 ARG 166 A ASP 167 n 187 ASP 167 A ILE 168 n 188 ILE 168 A LYS 169 n 189 LYS 169 A ASP 170 n 190 ASP 170 A GLU 171 n 191 GLU 171 A ASN 172 n 192 ASN 172 A ILE 173 n 193 ILE 173 A LEU 174 n 194 LEU 174 A ILE 175 n 195 ILE 175 A ASP 176 n 196 ASP 176 A LEU 177 n 197 LEU 177 A ASN 178 n 198 ASN 178 A ARG 179 n 199 ARG 179 A GLY 180 n 200 GLY 180 A GLU 181 n 201 GLU 181 A LEU 182 n 202 LEU 182 A LYS 183 n 203 LYS 183 A LEU 184 n 204 LEU 184 A ILE 185 n 205 ILE 185 A ASP 186 n 206 ASP 186 A PHE 187 n 207 PHE 187 A GLY 188 n 208 GLY 188 A SER 189 n 209 SER 189 A GLY 190 n 210 GLY 190 A ALA 191 n 211 ALA 191 A LEU 192 n 212 LEU 192 A LEU 193 n 213 LEU 193 A LYS 194 n 214 LYS 194 A ASP 195 n 215 ASP 195 A THR 196 n 216 THR 196 A VAL 197 n 217 VAL 197 A TYR 198 n 218 TYR 198 A THR 199 n 219 THR 199 A ASP 200 n 220 ASP 200 A PHE 201 n 221 PHE 201 A ASP 202 n 222 ASP 202 A GLY 203 n 223 GLY 203 A THR 204 n 224 THR 204 A ARG 205 n 225 ARG 205 A VAL 206 n 226 VAL 206 A TYR 207 n 227 TYR 207 A SER 208 n 228 SER 208 A PRO 209 n 229 PRO 209 A PRO 210 n 230 PRO 210 A GLU 211 n 231 GLU 211 A TRP 212 n 232 TRP 212 A ILE 213 n 233 ILE 213 A ARG 214 n 234 ARG 214 A TYR 215 n 235 TYR 215 A HIS 216 n 236 HIS 216 A ARG 217 n 237 ARG 217 A TYR 218 n 238 TYR 218 A HIS 219 n 239 HIS 219 A GLY 220 n 240 GLY 220 A ARG 221 n 241 ARG 221 A SER 222 n 242 SER 222 A ALA 223 n 243 ALA 223 A ALA 224 n 244 ALA 224 A VAL 225 n 245 VAL 225 A TRP 226 n 246 TRP 226 A SER 227 n 247 SER 227 A LEU 228 n 248 LEU 228 A GLY 229 n 249 GLY 229 A ILE 230 n 250 ILE 230 A LEU 231 n 251 LEU 231 A LEU 232 n 252 LEU 232 A TYR 233 n 253 TYR 233 A ASP 234 n 254 ASP 234 A MET 235 n 255 MET 235 A VAL 236 n 256 VAL 236 A CYS 237 n 257 CYS 237 A GLY 238 n 258 GLY 238 A ASP 239 n 259 ASP 239 A ILE 240 n 260 ILE 240 A PRO 241 n 261 PRO 241 A PHE 242 n 262 PHE 242 A GLU 243 n 263 GLU 243 A HIS 244 n 264 HIS 244 A ASP 245 n 265 ASP 245 A GLU 246 n 266 GLU 246 A GLU 247 n 267 GLU 247 A ILE 248 n 268 ILE 248 A ILE 249 n 269 ILE 249 A ARG 250 n 270 ARG 250 A GLY 251 n 271 GLY 251 A GLN 252 n 272 GLN 252 A VAL 253 n 273 VAL 253 A PHE 254 n 274 PHE 254 A PHE 255 n 275 PHE 255 A ARG 256 n 276 ARG 256 A GLN 257 n 277 GLN 257 A ARG 258 n 278 ARG 258 A VAL 259 n 279 VAL 259 A SER 260 n 280 SER 260 A SEP 261 n 281 SEP 261 A GLU 262 n 282 GLU 262 A CYS 263 n 283 CYS 263 A GLN 264 n 284 GLN 264 A HIS 265 n 285 HIS 265 A LEU 266 n 286 LEU 266 A ILE 267 n 287 ILE 267 A ARG 268 n 288 ARG 268 A TRP 269 n 289 TRP 269 A CYS 270 n 290 CYS 270 A LEU 271 n 291 LEU 271 A ALA 272 n 292 ALA 272 A LEU 273 n 293 LEU 273 A ARG 274 n 294 ARG 274 A PRO 275 n 295 PRO 275 A SER 276 n 296 SER 276 A ASP 277 n 297 ASP 277 A ARG 278 n 298 ARG 278 A PRO 279 n 299 PRO 279 A THR 280 n 300 THR 280 A PHE 281 n 301 PHE 281 A GLU 282 n 302 GLU 282 A GLU 283 n 303 GLU 283 A ILE 284 n 304 ILE 284 A GLN 285 n 305 GLN 285 A ASN 286 n 306 ASN 286 A HIS 287 n 307 HIS 287 A PRO 288 n 308 PRO 288 A TRP 289 n 309 TRP 289 A MET 290 n 310 MET 290 A GLN 291 n 311 GLN 291 A ASP 292 n 312 ASP 292 A VAL 293 n 313 VAL 293 A LEU 294 n 314 LEU 294 A LEU 295 n 315 LEU 295 A PRO 296 n 316 PRO 296 A GLN 297 n 317 GLN 297 A GLU 298 n 318 GLU 298 A THR 299 n 319 THR 299 A ALA 300 n 320 ALA 300 A GLU 301 n 321 GLU 301 A ILE 302 n 322 ILE 302 A HIS 303 n 323 HIS 303 A LEU 304 n 324 LEU 304 A HIS 305 n 325 HIS 305 A n 326 306 A n 327 307 A n 328 308 A n 329 309 A n 330 310 A n 331 311 A n 332 312 A n 333 313 A 0.218 0.217 0.234 1497 5.000 software_defined_assembly PISA 1 monomeric A SEP 261 PHOSPHOSERINE A SEP 281 SER 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 45 A N GLY 65 A O VAL 52 A O VAL 72 A N TYR 53 A N TYR 73 A O ILE 66 A O ILE 86 A N LYS 67 A N LYS 87 A O LEU 118 A O LEU 138 A O ILE 119 A O ILE 139 A N ASP 108 A N ASP 128 A N GLY 78 A N GLY 98 A O VAL 86 A O VAL 106 A N GLN 127 A N GLN 147 A O ILE 175 A O ILE 195 A N LEU 174 A N LEU 194 A O LYS 183 A O LYS 203 A N LEU 164 A N LEU 184 A O ALA 191 A O ALA 211 1 A CG GLU 79 A CG GLU 99 1 Y 1 A CD GLU 79 A CD GLU 99 1 Y 1 A OE1 GLU 79 A OE1 GLU 99 1 Y 1 A OE2 GLU 79 A OE2 GLU 99 1 Y 1 A CG ASN 82 A CG ASN 102 1 Y 1 A OD1 ASN 82 A OD1 ASN 102 1 Y 1 A ND2 ASN 82 A ND2 ASN 102 1 Y 1 A MET -19 A MET 1 1 Y 1 A GLY -18 A GLY 2 1 Y 1 A SER -17 A SER 3 1 Y 1 A SER -16 A SER 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A HIS -11 A HIS 9 1 Y 1 A HIS -10 A HIS 10 1 Y 1 A SER -9 A SER 11 1 Y 1 A SER -8 A SER 12 1 Y 1 A GLY -7 A GLY 13 1 Y 1 A LEU -6 A LEU 14 1 Y 1 A VAL -5 A VAL 15 1 Y 1 A PRO -4 A PRO 16 1 Y 1 A ARG -3 A ARG 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A SER -1 A SER 19 1 Y 1 A HIS 0 A HIS 20 1 Y 1 A MET 1 A MET 21 1 Y 1 A LEU 2 A LEU 22 1 Y 1 A LEU 3 A LEU 23 1 Y 1 A SER 4 A SER 24 1 Y 1 A LYS 5 A LYS 25 1 Y 1 A ILE 6 A ILE 26 1 Y 1 A ASN 7 A ASN 27 1 Y 1 A SER 8 A SER 28 1 Y 1 A LEU 9 A LEU 29 1 Y 1 A ALA 10 A ALA 30 1 Y 1 A HIS 11 A HIS 31 1 Y 1 A LEU 12 A LEU 32 1 Y 1 A ARG 13 A ARG 33 1 Y 1 A ALA 14 A ALA 34 1 Y 1 A ALA 15 A ALA 35 1 Y 1 A PRO 16 A PRO 36 1 Y 1 A CYS 17 A CYS 37 1 Y 1 A ASN 18 A ASN 38 1 Y 1 A ASP 19 A ASP 39 1 Y 1 A LEU 20 A LEU 40 1 Y 1 A HIS 21 A HIS 41 1 Y 1 A ALA 22 A ALA 42 1 Y 1 A THR 23 A THR 43 1 Y 1 A LYS 24 A LYS 44 1 Y 1 A LEU 25 A LEU 45 1 Y 1 A ALA 26 A ALA 46 1 Y 1 A PRO 27 A PRO 47 1 Y 1 A GLY 28 A GLY 48 1 Y 1 A LYS 29 A LYS 49 1 Y 1 A GLU 30 A GLU 50 1 Y 1 A LYS 31 A LYS 51 1 Y 1 A GLU 32 A GLU 52 1 Y 1 A SER 306 A SER 326 1 Y 1 A LEU 307 A LEU 327 1 Y 1 A SER 308 A SER 328 1 Y 1 A PRO 309 A PRO 329 1 Y 1 A GLY 310 A GLY 330 1 Y 1 A PRO 311 A PRO 331 1 Y 1 A SER 312 A SER 332 1 Y 1 A LYS 313 A LYS 333 1 Y 1 A ASN 82 -60.30 -93.73 1 A VAL 96 -92.57 47.80 1 A SER 98 127.95 152.77 1 A ASP 167 -149.13 40.42 1 A ASP 186 56.92 80.34 protein_rep.param &_1_TOPOLOGY_INFILE_1 water_rep.param &_1_TOPOLOGY_INFILE_2 missing.dat &_1_TOPOLOGY_INFILE_3 parmxray.xpl &_1_TOPOLOGY_INFILE_4 &_1_PARAMETER_INFILE_5 &_1_TOPOLOGY_INFILE_5 31.700 1.740 1.230 0.000 1.740 0.000 -3.480 0.230 0.006 0.212 0.213 2.000 19.780 1416 30204 28724 4.900 94.800 0.865 RANDOM 112856.898 0.000 1 RESTRAINED THROUGHOUT 0.00 FLAT MODEL 45.944 0.374 0.270 0.240 5.000 0.190 0.210 2.000 19.780 112 2359 26 0 2221 0.010 1.600 21.300 0.700 1.350 1.500 2.140 2.000 2.160 2.000 3.240 2.500 0.267 0.018 0.261 2.130 225 4089 4314 6 5.200 86.000 2.000 19.780 3BGQ 30223 0.062 0.960 1 10.100 3.580 818 99.900 0.360 2.00 2.07 2.3 8481 2993 1.440 2.80 99.70 0.297 2.07 2.15 2.8 9503 2996 1.330 3.14 100.00 0.252 2.15 2.25 3.7 10951 3018 1.240 3.58 100.00 0.189 2.25 2.37 4.7 11388 3024 1.090 3.74 100.00 0.149 2.37 2.52 5.8 11339 3006 0.970 3.75 100.00 0.115 2.52 2.71 7.1 11507 3033 0.920 3.76 100.00 0.080 2.71 2.99 10.1 11430 3011 0.830 3.78 100.00 0.053 2.99 3.42 14.5 11459 3019 0.710 3.78 100.00 0.038 3.42 4.30 20.5 11501 3040 0.670 3.77 100.00 0.031 4.30 19.78 25.3 11379 3083 0.650 3.68 99.90 data scaling Pflugrath, J.W. jwp@RigakuMSC.com Apr 27 2005 http://www.msc.com/protein/dtrek.html d*TREK package 9.4SSI refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 data reduction d*TREK refinement CNX 2005 Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.11.1) Human Pim-1 kinase in complex with an triazolo pyridazine inhibitor VX2 1 N N 2 N N 3 N N A PRO 33 A PRO 53 HELX_P A GLN 37 A GLN 57 1 1 5 A ASP 72 A ASP 92 HELX_P A ILE 74 A ILE 94 5 2 3 A MET 88 A MET 108 HELX_P A VAL 96 A VAL 116 1 3 9 A LEU 129 A LEU 149 HELX_P A GLY 137 A GLY 157 1 4 9 A GLN 140 A GLN 160 HELX_P A CYS 161 A CYS 181 1 5 22 A LYS 169 A LYS 189 HELX_P A GLU 171 A GLU 191 5 6 3 A THR 204 A THR 224 HELX_P A SER 208 A SER 228 5 7 5 A PRO 209 A PRO 229 HELX_P A HIS 216 A HIS 236 1 8 8 A HIS 219 A HIS 239 HELX_P A GLY 238 A GLY 258 1 9 20 A HIS 244 A HIS 264 HELX_P A GLY 251 A GLY 271 1 10 8 A SER 260 A SER 280 HELX_P A LEU 271 A LEU 291 1 11 12 A ARG 274 A ARG 294 HELX_P A ARG 278 A ARG 298 5 12 5 A THR 280 A THR 300 HELX_P A ASN 286 A ASN 306 1 13 7 A HIS 287 A HIS 307 HELX_P A GLN 291 A GLN 311 5 14 5 A LEU 295 A LEU 315 HELX_P A LEU 304 A LEU 324 1 15 10 covale 1.325 A SER 260 A C SER 280 1_555 A SEP 261 A N SEP 281 1_555 covale 1.329 A SEP 261 A C SEP 281 1_555 A GLU 262 A N GLU 282 1_555 TRANSFERASE kinase inhibitor phosphorylation, Alternative initiation, ATP-binding, Cytoplasm, Manganese, Membrane, Metal-binding, Nucleotide-binding, Nucleus, Phosphoprotein, Proto-oncogene, Serine/threonine-protein kinase, Transferase A GLU 124 A GLU 144 1 A PRO 125 A PRO 145 0.04 PIM1_HUMAN UNP 1 92 P11309 MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK 92 404 3BGQ 1 313 P11309 A 1 21 333 1 EXPRESSION TAG MET -19 3BGQ A P11309 UNP 1 1 EXPRESSION TAG GLY -18 3BGQ A P11309 UNP 2 1 EXPRESSION TAG SER -17 3BGQ A P11309 UNP 3 1 EXPRESSION TAG SER -16 3BGQ A P11309 UNP 4 1 EXPRESSION TAG HIS -15 3BGQ A P11309 UNP 5 1 EXPRESSION TAG HIS -14 3BGQ A P11309 UNP 6 1 EXPRESSION TAG HIS -13 3BGQ A P11309 UNP 7 1 EXPRESSION TAG HIS -12 3BGQ A P11309 UNP 8 1 EXPRESSION TAG HIS -11 3BGQ A P11309 UNP 9 1 EXPRESSION TAG HIS -10 3BGQ A P11309 UNP 10 1 EXPRESSION TAG SER -9 3BGQ A P11309 UNP 11 1 EXPRESSION TAG SER -8 3BGQ A P11309 UNP 12 1 EXPRESSION TAG GLY -7 3BGQ A P11309 UNP 13 1 EXPRESSION TAG LEU -6 3BGQ A P11309 UNP 14 1 EXPRESSION TAG VAL -5 3BGQ A P11309 UNP 15 1 EXPRESSION TAG PRO -4 3BGQ A P11309 UNP 16 1 EXPRESSION TAG ARG -3 3BGQ A P11309 UNP 17 1 EXPRESSION TAG GLY -2 3BGQ A P11309 UNP 18 1 EXPRESSION TAG SER -1 3BGQ A P11309 UNP 19 1 EXPRESSION TAG HIS 0 3BGQ A P11309 UNP 20 5 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 38 A TYR 58 A GLY 47 A GLY 67 A GLY 50 A GLY 70 A ARG 57 A ARG 77 A PRO 63 A PRO 83 A GLU 70 A GLU 90 A SER 115 A SER 135 A GLU 121 A GLU 141 A LEU 106 A LEU 126 A GLU 111 A GLU 131 A TRP 77 A TRP 97 A GLU 79 A GLU 99 A ARG 85 A ARG 105 A PRO 87 A PRO 107 A VAL 126 A VAL 146 A ASP 128 A ASP 148 A ILE 173 A ILE 193 A ASP 176 A ASP 196 A GLU 181 A GLU 201 A LEU 184 A LEU 204 A VAL 163 A VAL 183 A LEU 164 A LEU 184 A ALA 191 A ALA 211 A LEU 192 A LEU 212 BINDING SITE FOR RESIDUE VX2 A 314 Software 11 A LEU 44 A LEU 64 11 1_555 A PHE 49 A PHE 69 11 1_555 A ALA 65 A ALA 85 11 1_555 A LYS 67 A LYS 87 11 1_555 A ILE 104 A ILE 124 11 1_555 A GLU 121 A GLU 141 11 1_555 A ARG 122 A ARG 142 11 1_555 A ASP 128 A ASP 148 11 1_555 A LEU 174 A LEU 194 11 1_555 A ASP 186 A ASP 206 11 1_555 A HOH 334 C HOH 11 1_555 170 P 65