0.010169
0.005871
0.000000
0.000000
0.011742
0.000000
0.000000
0.000000
0.012293
0.000000
0.000000
0.000000
Jacobs, M.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
98.340
98.340
81.350
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C18 H18 F3 N5
361.364
N-cyclohexyl-3-[3-(trifluoromethyl)phenyl][1,2,4]triazolo[4,3-b]pyridazin-6-amine
non-polymer
US
J.Med.Chem.
JMCMAR
0151
0022-2623
51
1972
1975
10.1021/jm701248t
18290603
Docking study yields four novel inhibitors of the protooncogene pim-1 kinase.
2008
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
110
1
CCD
2005-05-31
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.0.1
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 5.0.1
37984.074
Proto-oncogene serine/threonine-protein kinase Pim-1
2.7.11.1
kinase domain residues 92-404
1
man
polymer
361.364
N-cyclohexyl-3-[3-(trifluoromethyl)phenyl][1,2,4]triazolo[4,3-b]pyridazin-6-amine
1
syn
non-polymer
18.015
water
112
nat
water
no
yes
MGSSHHHHHHSSGLVPRGSHMLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSD
NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQ
EELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHG
RSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVS(SEP)ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLP
QETAEIHLHSLSPGPSK
MGSSHHHHHHSSGLVPRGSHMLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSD
NLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQ
EELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHG
RSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETA
EIHLHSLSPGPSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
BL21/DE3 pLysS
plasmid
pBEV1
1
2.99
58.86
VAPOR DIFFUSION, HANGING DROP
5.5
1 M ammonium phosphate dibasic, 100 mM citrate, 200 mM NaCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
repository
Initial release
Version format compliance
1
0
2007-12-11
1
1
2011-07-13
Same protein complexed withg inhibitor VX1
Same protein complexed withg inhibitor VX3
RCSB
Y
RCSB
2007-11-27
REL
REL
VX2
N-cyclohexyl-3-[3-(trifluoromethyl)phenyl][1,2,4]triazolo[4,3-b]pyridazin-6-amine
HOH
water
VX2
1
2
VX2
VX2
314
A
HOH
156
3
HOH
HOH
315
A
HOH
157
3
HOH
HOH
316
A
HOH
158
3
HOH
HOH
317
A
HOH
159
3
HOH
HOH
318
A
HOH
160
3
HOH
HOH
319
A
HOH
161
3
HOH
HOH
320
A
HOH
162
3
HOH
HOH
321
A
HOH
163
3
HOH
HOH
322
A
HOH
164
3
HOH
HOH
323
A
HOH
165
3
HOH
HOH
324
A
HOH
166
3
HOH
HOH
325
A
HOH
167
3
HOH
HOH
326
A
HOH
168
3
HOH
HOH
327
A
HOH
169
3
HOH
HOH
328
A
HOH
170
3
HOH
HOH
329
A
HOH
171
3
HOH
HOH
330
A
HOH
172
3
HOH
HOH
331
A
HOH
173
3
HOH
HOH
332
A
HOH
174
3
HOH
HOH
333
A
HOH
175
3
HOH
HOH
334
A
HOH
176
3
HOH
HOH
335
A
HOH
177
3
HOH
HOH
336
A
HOH
178
3
HOH
HOH
337
A
HOH
179
3
HOH
HOH
338
A
HOH
180
3
HOH
HOH
339
A
HOH
181
3
HOH
HOH
340
A
HOH
182
3
HOH
HOH
341
A
HOH
183
3
HOH
HOH
342
A
HOH
184
3
HOH
HOH
343
A
HOH
185
3
HOH
HOH
344
A
HOH
186
3
HOH
HOH
345
A
HOH
187
3
HOH
HOH
346
A
HOH
188
3
HOH
HOH
347
A
HOH
189
3
HOH
HOH
348
A
HOH
190
3
HOH
HOH
349
A
HOH
191
3
HOH
HOH
350
A
HOH
192
3
HOH
HOH
351
A
HOH
193
3
HOH
HOH
352
A
HOH
194
3
HOH
HOH
353
A
HOH
195
3
HOH
HOH
354
A
HOH
196
3
HOH
HOH
355
A
HOH
197
3
HOH
HOH
356
A
HOH
198
3
HOH
HOH
357
A
HOH
199
3
HOH
HOH
358
A
HOH
200
3
HOH
HOH
359
A
HOH
201
3
HOH
HOH
360
A
HOH
202
3
HOH
HOH
361
A
HOH
203
3
HOH
HOH
362
A
HOH
204
3
HOH
HOH
363
A
HOH
205
3
HOH
HOH
364
A
HOH
206
3
HOH
HOH
365
A
HOH
207
3
HOH
HOH
366
A
HOH
208
3
HOH
HOH
367
A
HOH
209
3
HOH
HOH
368
A
HOH
210
3
HOH
HOH
369
A
HOH
211
3
HOH
HOH
370
A
HOH
212
3
HOH
HOH
371
A
HOH
213
3
HOH
HOH
372
A
HOH
214
3
HOH
HOH
373
A
HOH
215
3
HOH
HOH
374
A
HOH
216
3
HOH
HOH
375
A
HOH
217
3
HOH
HOH
376
A
HOH
218
3
HOH
HOH
377
A
HOH
219
3
HOH
HOH
378
A
HOH
220
3
HOH
HOH
379
A
HOH
221
3
HOH
HOH
380
A
HOH
222
3
HOH
HOH
381
A
HOH
223
3
HOH
HOH
382
A
HOH
224
3
HOH
HOH
383
A
HOH
225
3
HOH
HOH
384
A
HOH
226
3
HOH
HOH
385
A
HOH
227
3
HOH
HOH
386
A
HOH
228
3
HOH
HOH
387
A
HOH
229
3
HOH
HOH
388
A
HOH
230
3
HOH
HOH
389
A
HOH
231
3
HOH
HOH
390
A
HOH
232
3
HOH
HOH
391
A
HOH
233
3
HOH
HOH
392
A
HOH
234
3
HOH
HOH
393
A
HOH
235
3
HOH
HOH
394
A
HOH
236
3
HOH
HOH
395
A
HOH
237
3
HOH
HOH
396
A
HOH
238
3
HOH
HOH
397
A
HOH
239
3
HOH
HOH
398
A
HOH
240
3
HOH
HOH
399
A
HOH
241
3
HOH
HOH
400
A
HOH
242
3
HOH
HOH
401
A
HOH
243
3
HOH
HOH
402
A
HOH
244
3
HOH
HOH
403
A
HOH
245
3
HOH
HOH
404
A
HOH
246
3
HOH
HOH
405
A
HOH
247
3
HOH
HOH
406
A
HOH
248
3
HOH
HOH
407
A
HOH
249
3
HOH
HOH
408
A
HOH
250
3
HOH
HOH
409
A
HOH
251
3
HOH
HOH
410
A
HOH
252
3
HOH
HOH
411
A
HOH
253
3
HOH
HOH
412
A
HOH
254
3
HOH
HOH
413
A
HOH
255
3
HOH
HOH
414
A
HOH
256
3
HOH
HOH
415
A
HOH
257
3
HOH
HOH
416
A
HOH
258
3
HOH
HOH
417
A
HOH
259
3
HOH
HOH
418
A
HOH
260
3
HOH
HOH
419
A
HOH
261
3
HOH
HOH
420
A
HOH
262
3
HOH
HOH
421
A
HOH
263
3
HOH
HOH
422
A
HOH
264
3
HOH
HOH
423
A
HOH
265
3
HOH
HOH
424
A
HOH
266
3
HOH
HOH
425
A
HOH
267
3
HOH
HOH
426
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
n
22
2
A
n
23
3
A
n
24
4
A
n
25
5
A
n
26
6
A
n
27
7
A
n
28
8
A
n
29
9
A
n
30
10
A
n
31
11
A
n
32
12
A
n
33
13
A
n
34
14
A
n
35
15
A
n
36
16
A
n
37
17
A
n
38
18
A
n
39
19
A
n
40
20
A
n
41
21
A
n
42
22
A
n
43
23
A
n
44
24
A
n
45
25
A
n
46
26
A
n
47
27
A
n
48
28
A
n
49
29
A
n
50
30
A
n
51
31
A
n
52
32
A
PRO
33
n
53
PRO
33
A
LEU
34
n
54
LEU
34
A
GLU
35
n
55
GLU
35
A
SER
36
n
56
SER
36
A
GLN
37
n
57
GLN
37
A
TYR
38
n
58
TYR
38
A
GLN
39
n
59
GLN
39
A
VAL
40
n
60
VAL
40
A
GLY
41
n
61
GLY
41
A
PRO
42
n
62
PRO
42
A
LEU
43
n
63
LEU
43
A
LEU
44
n
64
LEU
44
A
GLY
45
n
65
GLY
45
A
SER
46
n
66
SER
46
A
GLY
47
n
67
GLY
47
A
GLY
48
n
68
GLY
48
A
PHE
49
n
69
PHE
49
A
GLY
50
n
70
GLY
50
A
SER
51
n
71
SER
51
A
VAL
52
n
72
VAL
52
A
TYR
53
n
73
TYR
53
A
SER
54
n
74
SER
54
A
GLY
55
n
75
GLY
55
A
ILE
56
n
76
ILE
56
A
ARG
57
n
77
ARG
57
A
VAL
58
n
78
VAL
58
A
SER
59
n
79
SER
59
A
ASP
60
n
80
ASP
60
A
ASN
61
n
81
ASN
61
A
LEU
62
n
82
LEU
62
A
PRO
63
n
83
PRO
63
A
VAL
64
n
84
VAL
64
A
ALA
65
n
85
ALA
65
A
ILE
66
n
86
ILE
66
A
LYS
67
n
87
LYS
67
A
HIS
68
n
88
HIS
68
A
VAL
69
n
89
VAL
69
A
GLU
70
n
90
GLU
70
A
LYS
71
n
91
LYS
71
A
ASP
72
n
92
ASP
72
A
ARG
73
n
93
ARG
73
A
ILE
74
n
94
ILE
74
A
SER
75
n
95
SER
75
A
ASP
76
n
96
ASP
76
A
TRP
77
n
97
TRP
77
A
GLY
78
n
98
GLY
78
A
GLU
79
n
99
GLU
79
A
LEU
80
n
100
LEU
80
A
PRO
81
n
101
PRO
81
A
ASN
82
n
102
ASN
82
A
GLY
83
n
103
GLY
83
A
THR
84
n
104
THR
84
A
ARG
85
n
105
ARG
85
A
VAL
86
n
106
VAL
86
A
PRO
87
n
107
PRO
87
A
MET
88
n
108
MET
88
A
GLU
89
n
109
GLU
89
A
VAL
90
n
110
VAL
90
A
VAL
91
n
111
VAL
91
A
LEU
92
n
112
LEU
92
A
LEU
93
n
113
LEU
93
A
LYS
94
n
114
LYS
94
A
LYS
95
n
115
LYS
95
A
VAL
96
n
116
VAL
96
A
SER
97
n
117
SER
97
A
SER
98
n
118
SER
98
A
GLY
99
n
119
GLY
99
A
PHE
100
n
120
PHE
100
A
SER
101
n
121
SER
101
A
GLY
102
n
122
GLY
102
A
VAL
103
n
123
VAL
103
A
ILE
104
n
124
ILE
104
A
ARG
105
n
125
ARG
105
A
LEU
106
n
126
LEU
106
A
LEU
107
n
127
LEU
107
A
ASP
108
n
128
ASP
108
A
TRP
109
n
129
TRP
109
A
PHE
110
n
130
PHE
110
A
GLU
111
n
131
GLU
111
A
ARG
112
n
132
ARG
112
A
PRO
113
n
133
PRO
113
A
ASP
114
n
134
ASP
114
A
SER
115
n
135
SER
115
A
PHE
116
n
136
PHE
116
A
VAL
117
n
137
VAL
117
A
LEU
118
n
138
LEU
118
A
ILE
119
n
139
ILE
119
A
LEU
120
n
140
LEU
120
A
GLU
121
n
141
GLU
121
A
ARG
122
n
142
ARG
122
A
PRO
123
n
143
PRO
123
A
GLU
124
n
144
GLU
124
A
PRO
125
n
145
PRO
125
A
VAL
126
n
146
VAL
126
A
GLN
127
n
147
GLN
127
A
ASP
128
n
148
ASP
128
A
LEU
129
n
149
LEU
129
A
PHE
130
n
150
PHE
130
A
ASP
131
n
151
ASP
131
A
PHE
132
n
152
PHE
132
A
ILE
133
n
153
ILE
133
A
THR
134
n
154
THR
134
A
GLU
135
n
155
GLU
135
A
ARG
136
n
156
ARG
136
A
GLY
137
n
157
GLY
137
A
ALA
138
n
158
ALA
138
A
LEU
139
n
159
LEU
139
A
GLN
140
n
160
GLN
140
A
GLU
141
n
161
GLU
141
A
GLU
142
n
162
GLU
142
A
LEU
143
n
163
LEU
143
A
ALA
144
n
164
ALA
144
A
ARG
145
n
165
ARG
145
A
SER
146
n
166
SER
146
A
PHE
147
n
167
PHE
147
A
PHE
148
n
168
PHE
148
A
TRP
149
n
169
TRP
149
A
GLN
150
n
170
GLN
150
A
VAL
151
n
171
VAL
151
A
LEU
152
n
172
LEU
152
A
GLU
153
n
173
GLU
153
A
ALA
154
n
174
ALA
154
A
VAL
155
n
175
VAL
155
A
ARG
156
n
176
ARG
156
A
HIS
157
n
177
HIS
157
A
CYS
158
n
178
CYS
158
A
HIS
159
n
179
HIS
159
A
ASN
160
n
180
ASN
160
A
CYS
161
n
181
CYS
161
A
GLY
162
n
182
GLY
162
A
VAL
163
n
183
VAL
163
A
LEU
164
n
184
LEU
164
A
HIS
165
n
185
HIS
165
A
ARG
166
n
186
ARG
166
A
ASP
167
n
187
ASP
167
A
ILE
168
n
188
ILE
168
A
LYS
169
n
189
LYS
169
A
ASP
170
n
190
ASP
170
A
GLU
171
n
191
GLU
171
A
ASN
172
n
192
ASN
172
A
ILE
173
n
193
ILE
173
A
LEU
174
n
194
LEU
174
A
ILE
175
n
195
ILE
175
A
ASP
176
n
196
ASP
176
A
LEU
177
n
197
LEU
177
A
ASN
178
n
198
ASN
178
A
ARG
179
n
199
ARG
179
A
GLY
180
n
200
GLY
180
A
GLU
181
n
201
GLU
181
A
LEU
182
n
202
LEU
182
A
LYS
183
n
203
LYS
183
A
LEU
184
n
204
LEU
184
A
ILE
185
n
205
ILE
185
A
ASP
186
n
206
ASP
186
A
PHE
187
n
207
PHE
187
A
GLY
188
n
208
GLY
188
A
SER
189
n
209
SER
189
A
GLY
190
n
210
GLY
190
A
ALA
191
n
211
ALA
191
A
LEU
192
n
212
LEU
192
A
LEU
193
n
213
LEU
193
A
LYS
194
n
214
LYS
194
A
ASP
195
n
215
ASP
195
A
THR
196
n
216
THR
196
A
VAL
197
n
217
VAL
197
A
TYR
198
n
218
TYR
198
A
THR
199
n
219
THR
199
A
ASP
200
n
220
ASP
200
A
PHE
201
n
221
PHE
201
A
ASP
202
n
222
ASP
202
A
GLY
203
n
223
GLY
203
A
THR
204
n
224
THR
204
A
ARG
205
n
225
ARG
205
A
VAL
206
n
226
VAL
206
A
TYR
207
n
227
TYR
207
A
SER
208
n
228
SER
208
A
PRO
209
n
229
PRO
209
A
PRO
210
n
230
PRO
210
A
GLU
211
n
231
GLU
211
A
TRP
212
n
232
TRP
212
A
ILE
213
n
233
ILE
213
A
ARG
214
n
234
ARG
214
A
TYR
215
n
235
TYR
215
A
HIS
216
n
236
HIS
216
A
ARG
217
n
237
ARG
217
A
TYR
218
n
238
TYR
218
A
HIS
219
n
239
HIS
219
A
GLY
220
n
240
GLY
220
A
ARG
221
n
241
ARG
221
A
SER
222
n
242
SER
222
A
ALA
223
n
243
ALA
223
A
ALA
224
n
244
ALA
224
A
VAL
225
n
245
VAL
225
A
TRP
226
n
246
TRP
226
A
SER
227
n
247
SER
227
A
LEU
228
n
248
LEU
228
A
GLY
229
n
249
GLY
229
A
ILE
230
n
250
ILE
230
A
LEU
231
n
251
LEU
231
A
LEU
232
n
252
LEU
232
A
TYR
233
n
253
TYR
233
A
ASP
234
n
254
ASP
234
A
MET
235
n
255
MET
235
A
VAL
236
n
256
VAL
236
A
CYS
237
n
257
CYS
237
A
GLY
238
n
258
GLY
238
A
ASP
239
n
259
ASP
239
A
ILE
240
n
260
ILE
240
A
PRO
241
n
261
PRO
241
A
PHE
242
n
262
PHE
242
A
GLU
243
n
263
GLU
243
A
HIS
244
n
264
HIS
244
A
ASP
245
n
265
ASP
245
A
GLU
246
n
266
GLU
246
A
GLU
247
n
267
GLU
247
A
ILE
248
n
268
ILE
248
A
ILE
249
n
269
ILE
249
A
ARG
250
n
270
ARG
250
A
GLY
251
n
271
GLY
251
A
GLN
252
n
272
GLN
252
A
VAL
253
n
273
VAL
253
A
PHE
254
n
274
PHE
254
A
PHE
255
n
275
PHE
255
A
ARG
256
n
276
ARG
256
A
GLN
257
n
277
GLN
257
A
ARG
258
n
278
ARG
258
A
VAL
259
n
279
VAL
259
A
SER
260
n
280
SER
260
A
SEP
261
n
281
SEP
261
A
GLU
262
n
282
GLU
262
A
CYS
263
n
283
CYS
263
A
GLN
264
n
284
GLN
264
A
HIS
265
n
285
HIS
265
A
LEU
266
n
286
LEU
266
A
ILE
267
n
287
ILE
267
A
ARG
268
n
288
ARG
268
A
TRP
269
n
289
TRP
269
A
CYS
270
n
290
CYS
270
A
LEU
271
n
291
LEU
271
A
ALA
272
n
292
ALA
272
A
LEU
273
n
293
LEU
273
A
ARG
274
n
294
ARG
274
A
PRO
275
n
295
PRO
275
A
SER
276
n
296
SER
276
A
ASP
277
n
297
ASP
277
A
ARG
278
n
298
ARG
278
A
PRO
279
n
299
PRO
279
A
THR
280
n
300
THR
280
A
PHE
281
n
301
PHE
281
A
GLU
282
n
302
GLU
282
A
GLU
283
n
303
GLU
283
A
ILE
284
n
304
ILE
284
A
GLN
285
n
305
GLN
285
A
ASN
286
n
306
ASN
286
A
HIS
287
n
307
HIS
287
A
PRO
288
n
308
PRO
288
A
TRP
289
n
309
TRP
289
A
MET
290
n
310
MET
290
A
GLN
291
n
311
GLN
291
A
ASP
292
n
312
ASP
292
A
VAL
293
n
313
VAL
293
A
LEU
294
n
314
LEU
294
A
LEU
295
n
315
LEU
295
A
PRO
296
n
316
PRO
296
A
GLN
297
n
317
GLN
297
A
GLU
298
n
318
GLU
298
A
THR
299
n
319
THR
299
A
ALA
300
n
320
ALA
300
A
GLU
301
n
321
GLU
301
A
ILE
302
n
322
ILE
302
A
HIS
303
n
323
HIS
303
A
LEU
304
n
324
LEU
304
A
HIS
305
n
325
HIS
305
A
n
326
306
A
n
327
307
A
n
328
308
A
n
329
309
A
n
330
310
A
n
331
311
A
n
332
312
A
n
333
313
A
0.218
0.217
0.234
1497
5.000
software_defined_assembly
PISA
1
monomeric
A
SEP
261
PHOSPHOSERINE
A
SEP
281
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
45
A
N
GLY
65
A
O
VAL
52
A
O
VAL
72
A
N
TYR
53
A
N
TYR
73
A
O
ILE
66
A
O
ILE
86
A
N
LYS
67
A
N
LYS
87
A
O
LEU
118
A
O
LEU
138
A
O
ILE
119
A
O
ILE
139
A
N
ASP
108
A
N
ASP
128
A
N
GLY
78
A
N
GLY
98
A
O
VAL
86
A
O
VAL
106
A
N
GLN
127
A
N
GLN
147
A
O
ILE
175
A
O
ILE
195
A
N
LEU
174
A
N
LEU
194
A
O
LYS
183
A
O
LYS
203
A
N
LEU
164
A
N
LEU
184
A
O
ALA
191
A
O
ALA
211
1
A
CG
GLU
79
A
CG
GLU
99
1
Y
1
A
CD
GLU
79
A
CD
GLU
99
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
99
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
99
1
Y
1
A
CG
ASN
82
A
CG
ASN
102
1
Y
1
A
OD1
ASN
82
A
OD1
ASN
102
1
Y
1
A
ND2
ASN
82
A
ND2
ASN
102
1
Y
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
LEU
2
A
LEU
22
1
Y
1
A
LEU
3
A
LEU
23
1
Y
1
A
SER
4
A
SER
24
1
Y
1
A
LYS
5
A
LYS
25
1
Y
1
A
ILE
6
A
ILE
26
1
Y
1
A
ASN
7
A
ASN
27
1
Y
1
A
SER
8
A
SER
28
1
Y
1
A
LEU
9
A
LEU
29
1
Y
1
A
ALA
10
A
ALA
30
1
Y
1
A
HIS
11
A
HIS
31
1
Y
1
A
LEU
12
A
LEU
32
1
Y
1
A
ARG
13
A
ARG
33
1
Y
1
A
ALA
14
A
ALA
34
1
Y
1
A
ALA
15
A
ALA
35
1
Y
1
A
PRO
16
A
PRO
36
1
Y
1
A
CYS
17
A
CYS
37
1
Y
1
A
ASN
18
A
ASN
38
1
Y
1
A
ASP
19
A
ASP
39
1
Y
1
A
LEU
20
A
LEU
40
1
Y
1
A
HIS
21
A
HIS
41
1
Y
1
A
ALA
22
A
ALA
42
1
Y
1
A
THR
23
A
THR
43
1
Y
1
A
LYS
24
A
LYS
44
1
Y
1
A
LEU
25
A
LEU
45
1
Y
1
A
ALA
26
A
ALA
46
1
Y
1
A
PRO
27
A
PRO
47
1
Y
1
A
GLY
28
A
GLY
48
1
Y
1
A
LYS
29
A
LYS
49
1
Y
1
A
GLU
30
A
GLU
50
1
Y
1
A
LYS
31
A
LYS
51
1
Y
1
A
GLU
32
A
GLU
52
1
Y
1
A
SER
306
A
SER
326
1
Y
1
A
LEU
307
A
LEU
327
1
Y
1
A
SER
308
A
SER
328
1
Y
1
A
PRO
309
A
PRO
329
1
Y
1
A
GLY
310
A
GLY
330
1
Y
1
A
PRO
311
A
PRO
331
1
Y
1
A
SER
312
A
SER
332
1
Y
1
A
LYS
313
A
LYS
333
1
Y
1
A
ASN
82
-60.30
-93.73
1
A
VAL
96
-92.57
47.80
1
A
SER
98
127.95
152.77
1
A
ASP
167
-149.13
40.42
1
A
ASP
186
56.92
80.34
protein_rep.param
&_1_TOPOLOGY_INFILE_1
water_rep.param
&_1_TOPOLOGY_INFILE_2
missing.dat
&_1_TOPOLOGY_INFILE_3
parmxray.xpl
&_1_TOPOLOGY_INFILE_4
&_1_PARAMETER_INFILE_5
&_1_TOPOLOGY_INFILE_5
31.700
1.740
1.230
0.000
1.740
0.000
-3.480
0.230
0.006
0.212
0.213
2.000
19.780
1416
30204
28724
4.900
94.800
0.865
RANDOM
112856.898
0.000
1
RESTRAINED
THROUGHOUT
0.00
FLAT MODEL
45.944
0.374
0.270
0.240
5.000
0.190
0.210
2.000
19.780
112
2359
26
0
2221
0.010
1.600
21.300
0.700
1.350
1.500
2.140
2.000
2.160
2.000
3.240
2.500
0.267
0.018
0.261
2.130
225
4089
4314
6
5.200
86.000
2.000
19.780
3BGQ
30223
0.062
0.960
1
10.100
3.580
818
99.900
0.360
2.00
2.07
2.3
8481
2993
1.440
2.80
99.70
0.297
2.07
2.15
2.8
9503
2996
1.330
3.14
100.00
0.252
2.15
2.25
3.7
10951
3018
1.240
3.58
100.00
0.189
2.25
2.37
4.7
11388
3024
1.090
3.74
100.00
0.149
2.37
2.52
5.8
11339
3006
0.970
3.75
100.00
0.115
2.52
2.71
7.1
11507
3033
0.920
3.76
100.00
0.080
2.71
2.99
10.1
11430
3011
0.830
3.78
100.00
0.053
2.99
3.42
14.5
11459
3019
0.710
3.78
100.00
0.038
3.42
4.30
20.5
11501
3040
0.670
3.77
100.00
0.031
4.30
19.78
25.3
11379
3083
0.650
3.68
99.90
data scaling
Pflugrath, J.W.
jwp@RigakuMSC.com
Apr 27 2005
http://www.msc.com/protein/dtrek.html
d*TREK
package
9.4SSI
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data reduction
d*TREK
refinement
CNX
2005
Proto-oncogene serine/threonine-protein kinase Pim-1 (E.C.2.7.11.1)
Human Pim-1 kinase in complex with an triazolo pyridazine inhibitor VX2
1
N
N
2
N
N
3
N
N
A
PRO
33
A
PRO
53
HELX_P
A
GLN
37
A
GLN
57
1
1
5
A
ASP
72
A
ASP
92
HELX_P
A
ILE
74
A
ILE
94
5
2
3
A
MET
88
A
MET
108
HELX_P
A
VAL
96
A
VAL
116
1
3
9
A
LEU
129
A
LEU
149
HELX_P
A
GLY
137
A
GLY
157
1
4
9
A
GLN
140
A
GLN
160
HELX_P
A
CYS
161
A
CYS
181
1
5
22
A
LYS
169
A
LYS
189
HELX_P
A
GLU
171
A
GLU
191
5
6
3
A
THR
204
A
THR
224
HELX_P
A
SER
208
A
SER
228
5
7
5
A
PRO
209
A
PRO
229
HELX_P
A
HIS
216
A
HIS
236
1
8
8
A
HIS
219
A
HIS
239
HELX_P
A
GLY
238
A
GLY
258
1
9
20
A
HIS
244
A
HIS
264
HELX_P
A
GLY
251
A
GLY
271
1
10
8
A
SER
260
A
SER
280
HELX_P
A
LEU
271
A
LEU
291
1
11
12
A
ARG
274
A
ARG
294
HELX_P
A
ARG
278
A
ARG
298
5
12
5
A
THR
280
A
THR
300
HELX_P
A
ASN
286
A
ASN
306
1
13
7
A
HIS
287
A
HIS
307
HELX_P
A
GLN
291
A
GLN
311
5
14
5
A
LEU
295
A
LEU
315
HELX_P
A
LEU
304
A
LEU
324
1
15
10
covale
1.325
A
SER
260
A
C
SER
280
1_555
A
SEP
261
A
N
SEP
281
1_555
covale
1.329
A
SEP
261
A
C
SEP
281
1_555
A
GLU
262
A
N
GLU
282
1_555
TRANSFERASE
kinase inhibitor phosphorylation, Alternative initiation, ATP-binding, Cytoplasm, Manganese, Membrane, Metal-binding, Nucleotide-binding, Nucleus, Phosphoprotein, Proto-oncogene, Serine/threonine-protein kinase, Transferase
A
GLU
124
A
GLU
144
1
A
PRO
125
A
PRO
145
0.04
PIM1_HUMAN
UNP
1
92
P11309
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
92
404
3BGQ
1
313
P11309
A
1
21
333
1
EXPRESSION TAG
MET
-19
3BGQ
A
P11309
UNP
1
1
EXPRESSION TAG
GLY
-18
3BGQ
A
P11309
UNP
2
1
EXPRESSION TAG
SER
-17
3BGQ
A
P11309
UNP
3
1
EXPRESSION TAG
SER
-16
3BGQ
A
P11309
UNP
4
1
EXPRESSION TAG
HIS
-15
3BGQ
A
P11309
UNP
5
1
EXPRESSION TAG
HIS
-14
3BGQ
A
P11309
UNP
6
1
EXPRESSION TAG
HIS
-13
3BGQ
A
P11309
UNP
7
1
EXPRESSION TAG
HIS
-12
3BGQ
A
P11309
UNP
8
1
EXPRESSION TAG
HIS
-11
3BGQ
A
P11309
UNP
9
1
EXPRESSION TAG
HIS
-10
3BGQ
A
P11309
UNP
10
1
EXPRESSION TAG
SER
-9
3BGQ
A
P11309
UNP
11
1
EXPRESSION TAG
SER
-8
3BGQ
A
P11309
UNP
12
1
EXPRESSION TAG
GLY
-7
3BGQ
A
P11309
UNP
13
1
EXPRESSION TAG
LEU
-6
3BGQ
A
P11309
UNP
14
1
EXPRESSION TAG
VAL
-5
3BGQ
A
P11309
UNP
15
1
EXPRESSION TAG
PRO
-4
3BGQ
A
P11309
UNP
16
1
EXPRESSION TAG
ARG
-3
3BGQ
A
P11309
UNP
17
1
EXPRESSION TAG
GLY
-2
3BGQ
A
P11309
UNP
18
1
EXPRESSION TAG
SER
-1
3BGQ
A
P11309
UNP
19
1
EXPRESSION TAG
HIS
0
3BGQ
A
P11309
UNP
20
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
58
A
GLY
47
A
GLY
67
A
GLY
50
A
GLY
70
A
ARG
57
A
ARG
77
A
PRO
63
A
PRO
83
A
GLU
70
A
GLU
90
A
SER
115
A
SER
135
A
GLU
121
A
GLU
141
A
LEU
106
A
LEU
126
A
GLU
111
A
GLU
131
A
TRP
77
A
TRP
97
A
GLU
79
A
GLU
99
A
ARG
85
A
ARG
105
A
PRO
87
A
PRO
107
A
VAL
126
A
VAL
146
A
ASP
128
A
ASP
148
A
ILE
173
A
ILE
193
A
ASP
176
A
ASP
196
A
GLU
181
A
GLU
201
A
LEU
184
A
LEU
204
A
VAL
163
A
VAL
183
A
LEU
164
A
LEU
184
A
ALA
191
A
ALA
211
A
LEU
192
A
LEU
212
BINDING SITE FOR RESIDUE VX2 A 314
Software
11
A
LEU
44
A
LEU
64
11
1_555
A
PHE
49
A
PHE
69
11
1_555
A
ALA
65
A
ALA
85
11
1_555
A
LYS
67
A
LYS
87
11
1_555
A
ILE
104
A
ILE
124
11
1_555
A
GLU
121
A
GLU
141
11
1_555
A
ARG
122
A
ARG
142
11
1_555
A
ASP
128
A
ASP
148
11
1_555
A
LEU
174
A
LEU
194
11
1_555
A
ASP
186
A
ASP
206
11
1_555
A
HOH
334
C
HOH
11
1_555
170
P 65