0.011971
0.000000
0.000000
0.000000
0.011971
0.000000
0.000000
0.000000
0.008796
0.000000
0.000000
0.000000
Filippakopoulos, P.
Rellos, P.
Fedorov, O.
Niesen, F.
Pike, A.C.W.
Pilka, E.S.
von Delft, F.
Arrowsmith, C.H.
Edwards, A.M.
Weigelt, J.
Knapp, S.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
83.533
83.533
113.693
C17 H18 N4 O3
326.350
4-(6-{[(1R)-1-(hydroxymethyl)propyl]amino}imidazo[1,2-b]pyridazin-3-yl)benzoic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H8 O2
76.094
S-1,2-PROPANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
N
4
N
C
N
5
N
O
N
6
N
O
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
N
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
N
Y
17
N
N
Y
18
N
C
N
19
N
N
N
20
R
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
O
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
Y
198
N
C
Y
199
N
N
Y
200
N
C
Y
201
N
C
Y
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
S
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
N
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
S
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
C
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
R
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
N
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
C
N
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
N
6
N
sing
Y
7
N
doub
N
8
N
sing
N
9
N
doub
Y
10
N
sing
N
11
N
sing
Y
12
N
doub
N
13
N
sing
Y
14
N
sing
Y
15
N
doub
Y
16
N
sing
Y
17
N
sing
N
18
N
sing
Y
19
N
doub
Y
20
N
sing
Y
21
N
sing
Y
22
N
doub
N
23
N
sing
Y
24
N
sing
N
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
sing
Y
198
N
doub
Y
199
N
doub
N
200
N
sing
Y
201
N
sing
N
202
N
sing
Y
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
To be Published
0353
Crystal Structure of Human Death Associated Protein Kinase 3 (DAPK3) in Complex with an Imidazo-Pyridazine Ligand.
10.2210/pdb3bqr/pdb
pdb_00003bqr
100
1
CCD
2007-10-26
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.98248
1.0
15.10
330854
0.061
1.02
1.750
50.000
39150
94.80
8.50
X10SA
SLS
0.98248
SYNCHROTRON
SLS BEAMLINE X10SA
32545.123
Death-associated protein kinase 3
2.7.11.1
Protein kinase domain: Residues 9-289
1
man
polymer
326.350
4-(6-{[(1R)-1-(hydroxymethyl)propyl]amino}imidazo[1,2-b]pyridazin-3-yl)benzoic acid
1
syn
non-polymer
76.094
S-1,2-PROPANEDIOL
2
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
304
nat
water
DAP kinase 3, DAP-like kinase, Dlk, ZIP-kinase
no
no
SMVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK
TDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH
KIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSE
LAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDSG
SMVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK
TDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH
KIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSE
LAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDSG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
DAPK3, ZIPK
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)(R3)
Plasmid
pNIC28-Bsa4
1
3.05
59.63
VAPOR DIFFUSION, SITTING DROP
6.2
25% 1,2-propanediol, 10% Glycerol, 0.1M Na/K phosphate pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Structural Genomics Consortium
SGC
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-02-26
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-08-30
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2007-12-20
REL
REL
0.032
1.017
97.30
8.60
0.057
1.022
90.90
8.70
0.051
1.025
100.00
9.70
0.071
1.002
100.00
9.60
0.108
1.017
76.30
7.60
0.152
1.028
100.00
9.10
0.226
1.030
100.00
8.90
0.422
1.009
84.70
5.80
0.660
1.042
99.80
8.50
0.894
1.025
98.90
7.40
4RB
4-(6-{[(1R)-1-(hydroxymethyl)propyl]amino}imidazo[1,2-b]pyridazin-3-yl)benzoic acid
PGO
S-1,2-PROPANEDIOL
GOL
GLYCEROL
HOH
water
1YRP
PDB entry 1YRP
PDB
experimental model
4RB
401
2
4RB
4RB
401
A
PGO
501
3
PGO
PGO
501
A
PGO
502
3
PGO
PGO
502
A
GOL
503
4
GOL
GOL
503
A
HOH
1
5
HOH
HOH
504
A
HOH
2
5
HOH
HOH
505
A
HOH
3
5
HOH
HOH
506
A
HOH
4
5
HOH
HOH
507
A
HOH
5
5
HOH
HOH
508
A
HOH
6
5
HOH
HOH
509
A
HOH
7
5
HOH
HOH
510
A
HOH
8
5
HOH
HOH
511
A
HOH
9
5
HOH
HOH
512
A
HOH
10
5
HOH
HOH
513
A
HOH
11
5
HOH
HOH
514
A
HOH
12
5
HOH
HOH
515
A
HOH
13
5
HOH
HOH
516
A
HOH
14
5
HOH
HOH
517
A
HOH
15
5
HOH
HOH
518
A
HOH
16
5
HOH
HOH
519
A
HOH
17
5
HOH
HOH
520
A
HOH
18
5
HOH
HOH
521
A
HOH
19
5
HOH
HOH
522
A
HOH
20
5
HOH
HOH
523
A
HOH
21
5
HOH
HOH
524
A
HOH
22
5
HOH
HOH
525
A
HOH
23
5
HOH
HOH
526
A
HOH
24
5
HOH
HOH
527
A
HOH
25
5
HOH
HOH
528
A
HOH
26
5
HOH
HOH
529
A
HOH
27
5
HOH
HOH
530
A
HOH
28
5
HOH
HOH
531
A
HOH
29
5
HOH
HOH
532
A
HOH
30
5
HOH
HOH
533
A
HOH
31
5
HOH
HOH
534
A
HOH
32
5
HOH
HOH
535
A
HOH
33
5
HOH
HOH
536
A
HOH
34
5
HOH
HOH
537
A
HOH
35
5
HOH
HOH
538
A
HOH
36
5
HOH
HOH
539
A
HOH
37
5
HOH
HOH
540
A
HOH
38
5
HOH
HOH
541
A
HOH
39
5
HOH
HOH
542
A
HOH
40
5
HOH
HOH
543
A
HOH
41
5
HOH
HOH
544
A
HOH
42
5
HOH
HOH
545
A
HOH
43
5
HOH
HOH
546
A
HOH
44
5
HOH
HOH
547
A
HOH
45
5
HOH
HOH
548
A
HOH
46
5
HOH
HOH
549
A
HOH
47
5
HOH
HOH
550
A
HOH
48
5
HOH
HOH
551
A
HOH
49
5
HOH
HOH
552
A
HOH
50
5
HOH
HOH
553
A
HOH
51
5
HOH
HOH
554
A
HOH
52
5
HOH
HOH
555
A
HOH
53
5
HOH
HOH
556
A
HOH
54
5
HOH
HOH
557
A
HOH
55
5
HOH
HOH
558
A
HOH
56
5
HOH
HOH
559
A
HOH
57
5
HOH
HOH
560
A
HOH
58
5
HOH
HOH
561
A
HOH
59
5
HOH
HOH
562
A
HOH
60
5
HOH
HOH
563
A
HOH
61
5
HOH
HOH
564
A
HOH
62
5
HOH
HOH
565
A
HOH
63
5
HOH
HOH
566
A
HOH
64
5
HOH
HOH
567
A
HOH
65
5
HOH
HOH
568
A
HOH
66
5
HOH
HOH
569
A
HOH
67
5
HOH
HOH
570
A
HOH
68
5
HOH
HOH
571
A
HOH
69
5
HOH
HOH
572
A
HOH
70
5
HOH
HOH
573
A
HOH
71
5
HOH
HOH
574
A
HOH
72
5
HOH
HOH
575
A
HOH
73
5
HOH
HOH
576
A
HOH
74
5
HOH
HOH
577
A
HOH
75
5
HOH
HOH
578
A
HOH
76
5
HOH
HOH
579
A
HOH
77
5
HOH
HOH
580
A
HOH
78
5
HOH
HOH
581
A
HOH
79
5
HOH
HOH
582
A
HOH
80
5
HOH
HOH
583
A
HOH
81
5
HOH
HOH
584
A
HOH
82
5
HOH
HOH
585
A
HOH
83
5
HOH
HOH
586
A
HOH
84
5
HOH
HOH
587
A
HOH
85
5
HOH
HOH
588
A
HOH
86
5
HOH
HOH
589
A
HOH
87
5
HOH
HOH
590
A
HOH
88
5
HOH
HOH
591
A
HOH
89
5
HOH
HOH
592
A
HOH
90
5
HOH
HOH
593
A
HOH
91
5
HOH
HOH
594
A
HOH
92
5
HOH
HOH
595
A
HOH
93
5
HOH
HOH
596
A
HOH
94
5
HOH
HOH
597
A
HOH
95
5
HOH
HOH
598
A
HOH
96
5
HOH
HOH
599
A
HOH
97
5
HOH
HOH
600
A
HOH
98
5
HOH
HOH
601
A
HOH
99
5
HOH
HOH
602
A
HOH
100
5
HOH
HOH
603
A
HOH
101
5
HOH
HOH
604
A
HOH
102
5
HOH
HOH
605
A
HOH
103
5
HOH
HOH
606
A
HOH
104
5
HOH
HOH
607
A
HOH
105
5
HOH
HOH
608
A
HOH
106
5
HOH
HOH
609
A
HOH
107
5
HOH
HOH
610
A
HOH
108
5
HOH
HOH
611
A
HOH
109
5
HOH
HOH
612
A
HOH
110
5
HOH
HOH
613
A
HOH
111
5
HOH
HOH
614
A
HOH
112
5
HOH
HOH
615
A
HOH
113
5
HOH
HOH
616
A
HOH
114
5
HOH
HOH
617
A
HOH
115
5
HOH
HOH
618
A
HOH
116
5
HOH
HOH
619
A
HOH
117
5
HOH
HOH
620
A
HOH
118
5
HOH
HOH
621
A
HOH
119
5
HOH
HOH
622
A
HOH
120
5
HOH
HOH
623
A
HOH
121
5
HOH
HOH
624
A
HOH
122
5
HOH
HOH
625
A
HOH
123
5
HOH
HOH
626
A
HOH
124
5
HOH
HOH
627
A
HOH
125
5
HOH
HOH
628
A
HOH
126
5
HOH
HOH
629
A
HOH
127
5
HOH
HOH
630
A
HOH
128
5
HOH
HOH
631
A
HOH
129
5
HOH
HOH
632
A
HOH
130
5
HOH
HOH
633
A
HOH
131
5
HOH
HOH
634
A
HOH
132
5
HOH
HOH
635
A
HOH
133
5
HOH
HOH
636
A
HOH
134
5
HOH
HOH
637
A
HOH
135
5
HOH
HOH
638
A
HOH
136
5
HOH
HOH
639
A
HOH
137
5
HOH
HOH
640
A
HOH
138
5
HOH
HOH
641
A
HOH
139
5
HOH
HOH
642
A
HOH
140
5
HOH
HOH
643
A
HOH
141
5
HOH
HOH
644
A
HOH
142
5
HOH
HOH
645
A
HOH
143
5
HOH
HOH
646
A
HOH
144
5
HOH
HOH
647
A
HOH
145
5
HOH
HOH
648
A
HOH
146
5
HOH
HOH
649
A
HOH
147
5
HOH
HOH
650
A
HOH
148
5
HOH
HOH
651
A
HOH
149
5
HOH
HOH
652
A
HOH
150
5
HOH
HOH
653
A
HOH
151
5
HOH
HOH
654
A
HOH
152
5
HOH
HOH
655
A
HOH
153
5
HOH
HOH
656
A
HOH
154
5
HOH
HOH
657
A
HOH
155
5
HOH
HOH
658
A
HOH
156
5
HOH
HOH
659
A
HOH
157
5
HOH
HOH
660
A
HOH
158
5
HOH
HOH
661
A
HOH
159
5
HOH
HOH
662
A
HOH
160
5
HOH
HOH
663
A
HOH
161
5
HOH
HOH
664
A
HOH
162
5
HOH
HOH
665
A
HOH
163
5
HOH
HOH
666
A
HOH
164
5
HOH
HOH
667
A
HOH
165
5
HOH
HOH
668
A
HOH
166
5
HOH
HOH
669
A
HOH
167
5
HOH
HOH
670
A
HOH
168
5
HOH
HOH
671
A
HOH
169
5
HOH
HOH
672
A
HOH
170
5
HOH
HOH
673
A
HOH
171
5
HOH
HOH
674
A
HOH
172
5
HOH
HOH
675
A
HOH
173
5
HOH
HOH
676
A
HOH
174
5
HOH
HOH
677
A
HOH
175
5
HOH
HOH
678
A
HOH
176
5
HOH
HOH
679
A
HOH
177
5
HOH
HOH
680
A
HOH
178
5
HOH
HOH
681
A
HOH
179
5
HOH
HOH
682
A
HOH
180
5
HOH
HOH
683
A
HOH
181
5
HOH
HOH
684
A
HOH
182
5
HOH
HOH
685
A
HOH
183
5
HOH
HOH
686
A
HOH
184
5
HOH
HOH
687
A
HOH
185
5
HOH
HOH
688
A
HOH
186
5
HOH
HOH
689
A
HOH
187
5
HOH
HOH
690
A
HOH
188
5
HOH
HOH
691
A
HOH
189
5
HOH
HOH
692
A
HOH
190
5
HOH
HOH
693
A
HOH
191
5
HOH
HOH
694
A
HOH
192
5
HOH
HOH
695
A
HOH
193
5
HOH
HOH
696
A
HOH
194
5
HOH
HOH
697
A
HOH
195
5
HOH
HOH
698
A
HOH
196
5
HOH
HOH
699
A
HOH
197
5
HOH
HOH
700
A
HOH
198
5
HOH
HOH
701
A
HOH
199
5
HOH
HOH
702
A
HOH
200
5
HOH
HOH
703
A
HOH
201
5
HOH
HOH
704
A
HOH
202
5
HOH
HOH
705
A
HOH
203
5
HOH
HOH
706
A
HOH
204
5
HOH
HOH
707
A
HOH
205
5
HOH
HOH
708
A
HOH
206
5
HOH
HOH
709
A
HOH
207
5
HOH
HOH
710
A
HOH
209
5
HOH
HOH
711
A
HOH
210
5
HOH
HOH
712
A
HOH
211
5
HOH
HOH
713
A
HOH
212
5
HOH
HOH
714
A
HOH
213
5
HOH
HOH
715
A
HOH
214
5
HOH
HOH
716
A
HOH
215
5
HOH
HOH
717
A
HOH
216
5
HOH
HOH
718
A
HOH
217
5
HOH
HOH
719
A
HOH
218
5
HOH
HOH
720
A
HOH
219
5
HOH
HOH
721
A
HOH
220
5
HOH
HOH
722
A
HOH
221
5
HOH
HOH
723
A
HOH
222
5
HOH
HOH
724
A
HOH
223
5
HOH
HOH
725
A
HOH
224
5
HOH
HOH
726
A
HOH
225
5
HOH
HOH
727
A
HOH
226
5
HOH
HOH
728
A
HOH
227
5
HOH
HOH
729
A
HOH
228
5
HOH
HOH
730
A
HOH
229
5
HOH
HOH
731
A
HOH
230
5
HOH
HOH
732
A
HOH
231
5
HOH
HOH
733
A
HOH
232
5
HOH
HOH
734
A
HOH
233
5
HOH
HOH
735
A
HOH
234
5
HOH
HOH
736
A
HOH
235
5
HOH
HOH
737
A
HOH
236
5
HOH
HOH
738
A
HOH
237
5
HOH
HOH
739
A
HOH
238
5
HOH
HOH
740
A
HOH
239
5
HOH
HOH
741
A
HOH
240
5
HOH
HOH
742
A
HOH
241
5
HOH
HOH
743
A
HOH
242
5
HOH
HOH
744
A
HOH
243
5
HOH
HOH
745
A
HOH
244
5
HOH
HOH
746
A
HOH
245
5
HOH
HOH
747
A
HOH
246
5
HOH
HOH
748
A
HOH
247
5
HOH
HOH
749
A
HOH
248
5
HOH
HOH
750
A
HOH
249
5
HOH
HOH
751
A
HOH
250
5
HOH
HOH
752
A
HOH
251
5
HOH
HOH
753
A
HOH
252
5
HOH
HOH
754
A
HOH
253
5
HOH
HOH
755
A
HOH
254
5
HOH
HOH
756
A
HOH
255
5
HOH
HOH
757
A
HOH
256
5
HOH
HOH
758
A
HOH
257
5
HOH
HOH
759
A
HOH
258
5
HOH
HOH
760
A
HOH
259
5
HOH
HOH
761
A
HOH
260
5
HOH
HOH
762
A
HOH
261
5
HOH
HOH
763
A
HOH
262
5
HOH
HOH
764
A
HOH
263
5
HOH
HOH
765
A
HOH
264
5
HOH
HOH
766
A
HOH
265
5
HOH
HOH
767
A
HOH
266
5
HOH
HOH
768
A
HOH
267
5
HOH
HOH
769
A
HOH
268
5
HOH
HOH
770
A
HOH
269
5
HOH
HOH
771
A
HOH
270
5
HOH
HOH
772
A
HOH
271
5
HOH
HOH
773
A
HOH
272
5
HOH
HOH
774
A
HOH
273
5
HOH
HOH
775
A
HOH
274
5
HOH
HOH
776
A
HOH
275
5
HOH
HOH
777
A
HOH
277
5
HOH
HOH
778
A
HOH
278
5
HOH
HOH
779
A
HOH
279
5
HOH
HOH
780
A
HOH
281
5
HOH
HOH
781
A
HOH
282
5
HOH
HOH
782
A
HOH
283
5
HOH
HOH
783
A
HOH
284
5
HOH
HOH
784
A
HOH
285
5
HOH
HOH
785
A
HOH
286
5
HOH
HOH
786
A
HOH
287
5
HOH
HOH
787
A
HOH
288
5
HOH
HOH
788
A
HOH
289
5
HOH
HOH
789
A
HOH
291
5
HOH
HOH
790
A
HOH
292
5
HOH
HOH
791
A
HOH
293
5
HOH
HOH
792
A
HOH
294
5
HOH
HOH
793
A
HOH
295
5
HOH
HOH
794
A
HOH
296
5
HOH
HOH
795
A
HOH
297
5
HOH
HOH
796
A
HOH
298
5
HOH
HOH
797
A
HOH
299
5
HOH
HOH
798
A
HOH
300
5
HOH
HOH
799
A
HOH
301
5
HOH
HOH
800
A
HOH
302
5
HOH
HOH
801
A
HOH
303
5
HOH
HOH
802
A
HOH
304
5
HOH
HOH
803
A
HOH
305
5
HOH
HOH
804
A
HOH
306
5
HOH
HOH
805
A
HOH
307
5
HOH
HOH
806
A
HOH
308
5
HOH
HOH
807
A
2.500
1.750
35.490
35.490
Phaser MODE: MR_AUTO
SER
7
n
1
SER
7
A
MET
8
n
2
MET
8
A
VAL
9
n
3
VAL
9
A
GLU
10
n
4
GLU
10
A
ASP
11
n
5
ASP
11
A
HIS
12
n
6
HIS
12
A
TYR
13
n
7
TYR
13
A
GLU
14
n
8
GLU
14
A
MET
15
n
9
MET
15
A
GLY
16
n
10
GLY
16
A
GLU
17
n
11
GLU
17
A
GLU
18
n
12
GLU
18
A
LEU
19
n
13
LEU
19
A
GLY
20
n
14
GLY
20
A
SER
21
n
15
SER
21
A
GLY
22
n
16
GLY
22
A
GLN
23
n
17
GLN
23
A
PHE
24
n
18
PHE
24
A
ALA
25
n
19
ALA
25
A
ILE
26
n
20
ILE
26
A
VAL
27
n
21
VAL
27
A
ARG
28
n
22
ARG
28
A
LYS
29
n
23
LYS
29
A
CYS
30
n
24
CYS
30
A
ARG
31
n
25
ARG
31
A
GLN
32
n
26
GLN
32
A
LYS
33
n
27
LYS
33
A
GLY
34
n
28
GLY
34
A
THR
35
n
29
THR
35
A
GLY
36
n
30
GLY
36
A
LYS
37
n
31
LYS
37
A
GLU
38
n
32
GLU
38
A
TYR
39
n
33
TYR
39
A
ALA
40
n
34
ALA
40
A
ALA
41
n
35
ALA
41
A
LYS
42
n
36
LYS
42
A
PHE
43
n
37
PHE
43
A
ILE
44
n
38
ILE
44
A
LYS
45
n
39
LYS
45
A
LYS
46
n
40
LYS
46
A
ARG
47
n
41
ARG
47
A
ARG
48
n
42
ARG
48
A
LEU
49
n
43
LEU
49
A
SER
50
n
44
SER
50
A
SER
51
n
45
SER
51
A
SER
52
n
46
SER
52
A
ARG
53
n
47
ARG
53
A
ARG
54
n
48
ARG
54
A
GLY
55
n
49
GLY
55
A
VAL
56
n
50
VAL
56
A
SER
57
n
51
SER
57
A
ARG
58
n
52
ARG
58
A
GLU
59
n
53
GLU
59
A
GLU
60
n
54
GLU
60
A
ILE
61
n
55
ILE
61
A
GLU
62
n
56
GLU
62
A
ARG
63
n
57
ARG
63
A
GLU
64
n
58
GLU
64
A
VAL
65
n
59
VAL
65
A
ASN
66
n
60
ASN
66
A
ILE
67
n
61
ILE
67
A
LEU
68
n
62
LEU
68
A
ARG
69
n
63
ARG
69
A
GLU
70
n
64
GLU
70
A
ILE
71
n
65
ILE
71
A
ARG
72
n
66
ARG
72
A
HIS
73
n
67
HIS
73
A
PRO
74
n
68
PRO
74
A
ASN
75
n
69
ASN
75
A
ILE
76
n
70
ILE
76
A
ILE
77
n
71
ILE
77
A
THR
78
n
72
THR
78
A
LEU
79
n
73
LEU
79
A
HIS
80
n
74
HIS
80
A
ASP
81
n
75
ASP
81
A
ILE
82
n
76
ILE
82
A
PHE
83
n
77
PHE
83
A
GLU
84
n
78
GLU
84
A
ASN
85
n
79
ASN
85
A
LYS
86
n
80
LYS
86
A
THR
87
n
81
THR
87
A
ASP
88
n
82
ASP
88
A
VAL
89
n
83
VAL
89
A
VAL
90
n
84
VAL
90
A
LEU
91
n
85
LEU
91
A
ILE
92
n
86
ILE
92
A
LEU
93
n
87
LEU
93
A
GLU
94
n
88
GLU
94
A
LEU
95
n
89
LEU
95
A
VAL
96
n
90
VAL
96
A
SER
97
n
91
SER
97
A
GLY
98
n
92
GLY
98
A
GLY
99
n
93
GLY
99
A
GLU
100
n
94
GLU
100
A
LEU
101
n
95
LEU
101
A
PHE
102
n
96
PHE
102
A
ASP
103
n
97
ASP
103
A
PHE
104
n
98
PHE
104
A
LEU
105
n
99
LEU
105
A
ALA
106
n
100
ALA
106
A
GLU
107
n
101
GLU
107
A
LYS
108
n
102
LYS
108
A
GLU
109
n
103
GLU
109
A
SER
110
n
104
SER
110
A
LEU
111
n
105
LEU
111
A
THR
112
n
106
THR
112
A
GLU
113
n
107
GLU
113
A
ASP
114
n
108
ASP
114
A
GLU
115
n
109
GLU
115
A
ALA
116
n
110
ALA
116
A
THR
117
n
111
THR
117
A
GLN
118
n
112
GLN
118
A
PHE
119
n
113
PHE
119
A
LEU
120
n
114
LEU
120
A
LYS
121
n
115
LYS
121
A
GLN
122
n
116
GLN
122
A
ILE
123
n
117
ILE
123
A
LEU
124
n
118
LEU
124
A
ASP
125
n
119
ASP
125
A
GLY
126
n
120
GLY
126
A
VAL
127
n
121
VAL
127
A
HIS
128
n
122
HIS
128
A
TYR
129
n
123
TYR
129
A
LEU
130
n
124
LEU
130
A
HIS
131
n
125
HIS
131
A
SER
132
n
126
SER
132
A
LYS
133
n
127
LYS
133
A
ARG
134
n
128
ARG
134
A
ILE
135
n
129
ILE
135
A
ALA
136
n
130
ALA
136
A
HIS
137
n
131
HIS
137
A
PHE
138
n
132
PHE
138
A
ASP
139
n
133
ASP
139
A
LEU
140
n
134
LEU
140
A
LYS
141
n
135
LYS
141
A
PRO
142
n
136
PRO
142
A
GLU
143
n
137
GLU
143
A
ASN
144
n
138
ASN
144
A
ILE
145
n
139
ILE
145
A
MET
146
n
140
MET
146
A
LEU
147
n
141
LEU
147
A
LEU
148
n
142
LEU
148
A
ASP
149
n
143
ASP
149
A
LYS
150
n
144
LYS
150
A
ASN
151
n
145
ASN
151
A
VAL
152
n
146
VAL
152
A
PRO
153
n
147
PRO
153
A
ASN
154
n
148
ASN
154
A
PRO
155
n
149
PRO
155
A
ARG
156
n
150
ARG
156
A
ILE
157
n
151
ILE
157
A
LYS
158
n
152
LYS
158
A
LEU
159
n
153
LEU
159
A
ILE
160
n
154
ILE
160
A
ASP
161
n
155
ASP
161
A
PHE
162
n
156
PHE
162
A
GLY
163
n
157
GLY
163
A
ILE
164
n
158
ILE
164
A
ALA
165
n
159
ALA
165
A
HIS
166
n
160
HIS
166
A
LYS
167
n
161
LYS
167
A
ILE
168
n
162
ILE
168
A
GLU
169
n
163
GLU
169
A
ALA
170
n
164
ALA
170
A
GLY
171
n
165
GLY
171
A
ASN
172
n
166
ASN
172
A
n
167
173
A
n
168
174
A
n
169
175
A
ASN
176
n
170
ASN
176
A
ILE
177
n
171
ILE
177
A
PHE
178
n
172
PHE
178
A
GLY
179
n
173
GLY
179
A
THR
180
n
174
THR
180
A
PRO
181
n
175
PRO
181
A
GLU
182
n
176
GLU
182
A
PHE
183
n
177
PHE
183
A
VAL
184
n
178
VAL
184
A
ALA
185
n
179
ALA
185
A
PRO
186
n
180
PRO
186
A
GLU
187
n
181
GLU
187
A
ILE
188
n
182
ILE
188
A
VAL
189
n
183
VAL
189
A
ASN
190
n
184
ASN
190
A
TYR
191
n
185
TYR
191
A
GLU
192
n
186
GLU
192
A
PRO
193
n
187
PRO
193
A
LEU
194
n
188
LEU
194
A
GLY
195
n
189
GLY
195
A
LEU
196
n
190
LEU
196
A
GLU
197
n
191
GLU
197
A
ALA
198
n
192
ALA
198
A
ASP
199
n
193
ASP
199
A
MET
200
n
194
MET
200
A
TRP
201
n
195
TRP
201
A
SER
202
n
196
SER
202
A
ILE
203
n
197
ILE
203
A
GLY
204
n
198
GLY
204
A
VAL
205
n
199
VAL
205
A
ILE
206
n
200
ILE
206
A
THR
207
n
201
THR
207
A
TYR
208
n
202
TYR
208
A
ILE
209
n
203
ILE
209
A
LEU
210
n
204
LEU
210
A
LEU
211
n
205
LEU
211
A
SER
212
n
206
SER
212
A
GLY
213
n
207
GLY
213
A
ALA
214
n
208
ALA
214
A
SER
215
n
209
SER
215
A
PRO
216
n
210
PRO
216
A
PHE
217
n
211
PHE
217
A
LEU
218
n
212
LEU
218
A
GLY
219
n
213
GLY
219
A
GLU
220
n
214
GLU
220
A
THR
221
n
215
THR
221
A
LYS
222
n
216
LYS
222
A
GLN
223
n
217
GLN
223
A
GLU
224
n
218
GLU
224
A
THR
225
n
219
THR
225
A
LEU
226
n
220
LEU
226
A
THR
227
n
221
THR
227
A
ASN
228
n
222
ASN
228
A
ILE
229
n
223
ILE
229
A
SER
230
n
224
SER
230
A
ALA
231
n
225
ALA
231
A
VAL
232
n
226
VAL
232
A
ASN
233
n
227
ASN
233
A
TYR
234
n
228
TYR
234
A
ASP
235
n
229
ASP
235
A
PHE
236
n
230
PHE
236
A
ASP
237
n
231
ASP
237
A
GLU
238
n
232
GLU
238
A
GLU
239
n
233
GLU
239
A
TYR
240
n
234
TYR
240
A
PHE
241
n
235
PHE
241
A
SER
242
n
236
SER
242
A
ASN
243
n
237
ASN
243
A
THR
244
n
238
THR
244
A
SER
245
n
239
SER
245
A
GLU
246
n
240
GLU
246
A
LEU
247
n
241
LEU
247
A
ALA
248
n
242
ALA
248
A
LYS
249
n
243
LYS
249
A
ASP
250
n
244
ASP
250
A
PHE
251
n
245
PHE
251
A
ILE
252
n
246
ILE
252
A
ARG
253
n
247
ARG
253
A
ARG
254
n
248
ARG
254
A
LEU
255
n
249
LEU
255
A
LEU
256
n
250
LEU
256
A
VAL
257
n
251
VAL
257
A
LYS
258
n
252
LYS
258
A
ASP
259
n
253
ASP
259
A
PRO
260
n
254
PRO
260
A
LYS
261
n
255
LYS
261
A
ARG
262
n
256
ARG
262
A
ARG
263
n
257
ARG
263
A
MET
264
n
258
MET
264
A
THR
265
n
259
THR
265
A
ILE
266
n
260
ILE
266
A
ALA
267
n
261
ALA
267
A
GLN
268
n
262
GLN
268
A
SER
269
n
263
SER
269
A
LEU
270
n
264
LEU
270
A
GLU
271
n
265
GLU
271
A
HIS
272
n
266
HIS
272
A
SER
273
n
267
SER
273
A
TRP
274
n
268
TRP
274
A
ILE
275
n
269
ILE
275
A
LYS
276
n
270
LYS
276
A
ALA
277
n
271
ALA
277
A
ILE
278
n
272
ILE
278
A
ARG
279
n
273
ARG
279
A
ARG
280
n
274
ARG
280
A
ARG
281
n
275
ARG
281
A
ASN
282
n
276
ASN
282
A
VAL
283
n
277
VAL
283
A
ARG
284
n
278
ARG
284
A
n
279
285
A
n
280
286
A
n
281
287
A
n
282
288
A
n
283
289
A
0.9252
-0.0084
-0.1964
0.5211
0.0258
0.5451
-0.0316
-0.0138
0.0342
-0.0490
0.0104
0.0050
0.0267
-0.0193
0.0212
-0.0297
0.0104
-0.0115
-0.0882
0.0152
-0.0832
refined
13.7805
42.2295
28.5283
X-RAY DIFFRACTION
A
7
A
1
A
172
A
166
X-RAY DIFFRACTION
1
A
176
A
170
A
191
A
185
X-RAY DIFFRACTION
1
A
192
A
186
A
284
A
278
X-RAY DIFFRACTION
1
A
401
B
1
A
401
B
1
X-RAY DIFFRACTION
1
software_defined_assembly
PISA
2
dimeric
3790
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
83.5330000000
83.5330000000
56.8465000000
A
N
LEU
19
A
N
LEU
13
A
O
VAL
27
A
O
VAL
21
A
N
ARG
28
A
N
ARG
22
A
O
ALA
41
A
O
ALA
35
A
N
ALA
40
A
N
ALA
34
A
O
LEU
93
A
O
LEU
87
A
O
VAL
90
A
O
VAL
84
A
N
PHE
83
A
N
PHE
77
A
N
ALA
136
A
N
ALA
130
A
O
HIS
166
A
O
HIS
160
A
N
MET
146
A
N
MET
140
A
O
LYS
158
A
O
LYS
152
1
A
NE
ARG
48
A
NE
ARG
42
1
Y
1
A
CZ
ARG
48
A
CZ
ARG
42
1
Y
1
A
NH1
ARG
48
A
NH1
ARG
42
1
Y
1
A
NH2
ARG
48
A
NH2
ARG
42
1
Y
1
A
CZ
ARG
53
A
CZ
ARG
47
1
Y
1
A
NH1
ARG
53
A
NH1
ARG
47
1
Y
1
A
NH2
ARG
53
A
NH2
ARG
47
1
Y
1
A
CD
LYS
86
A
CD
LYS
80
1
Y
1
A
CE
LYS
86
A
CE
LYS
80
1
Y
1
A
NZ
LYS
86
A
NZ
LYS
80
1
Y
1
A
CD
GLN
118
A
CD
GLN
112
1
Y
1
A
OE1
GLN
118
A
OE1
GLN
112
1
Y
1
A
NE2
GLN
118
A
NE2
GLN
112
1
Y
1
A
CG
GLU
169
A
CG
GLU
163
1
Y
1
A
CD
GLU
169
A
CD
GLU
163
1
Y
1
A
OE1
GLU
169
A
OE1
GLU
163
1
Y
1
A
OE2
GLU
169
A
OE2
GLU
163
1
Y
1
A
CG
ASN
172
A
CG
ASN
166
1
Y
1
A
OD1
ASN
172
A
OD1
ASN
166
1
Y
1
A
ND2
ASN
172
A
ND2
ASN
166
1
Y
1
A
CG
ASN
176
A
CG
ASN
170
1
Y
1
A
OD1
ASN
176
A
OD1
ASN
170
1
Y
1
A
ND2
ASN
176
A
ND2
ASN
170
1
Y
1
A
CG1
ILE
177
A
CG1
ILE
171
1
Y
1
A
CG2
ILE
177
A
CG2
ILE
171
1
Y
1
A
CD1
ILE
177
A
CD1
ILE
171
1
Y
1
A
CD
LYS
222
A
CD
LYS
216
1
Y
1
A
CE
LYS
222
A
CE
LYS
216
1
Y
1
A
NZ
LYS
222
A
NZ
LYS
216
1
Y
1
A
CE
LYS
261
A
CE
LYS
255
1
Y
1
A
NZ
LYS
261
A
NZ
LYS
255
1
Y
1
A
CG
ARG
280
A
CG
ARG
274
1
Y
1
A
CD
ARG
280
A
CD
ARG
274
1
Y
1
A
NE
ARG
280
A
NE
ARG
274
1
Y
1
A
CZ
ARG
280
A
CZ
ARG
274
1
Y
1
A
NH1
ARG
280
A
NH1
ARG
274
1
Y
1
A
NH2
ARG
280
A
NH2
ARG
274
1
Y
1
A
CG
ARG
281
A
CG
ARG
275
1
Y
1
A
CD
ARG
281
A
CD
ARG
275
1
Y
1
A
NE
ARG
281
A
NE
ARG
275
1
Y
1
A
CZ
ARG
281
A
CZ
ARG
275
1
Y
1
A
NH1
ARG
281
A
NH1
ARG
275
1
Y
1
A
NH2
ARG
281
A
NH2
ARG
275
1
Y
1
A
CG
ARG
284
A
CG
ARG
278
1
Y
1
A
CD
ARG
284
A
CD
ARG
278
1
Y
1
A
NE
ARG
284
A
NE
ARG
278
1
Y
1
A
CZ
ARG
284
A
CZ
ARG
278
1
Y
1
A
NH1
ARG
284
A
NH1
ARG
278
1
Y
1
A
NH2
ARG
284
A
NH2
ARG
278
1
Y
1
A
GLU
173
A
GLU
167
1
Y
1
A
PHE
174
A
PHE
168
1
Y
1
A
LYS
175
A
LYS
169
1
Y
1
A
GLY
285
A
GLY
279
1
Y
1
A
GLU
286
A
GLU
280
1
Y
1
A
ASP
287
A
ASP
281
1
Y
1
A
SER
288
A
SER
282
1
Y
1
A
GLY
289
A
GLY
283
1
Y
1
A
ASN
85
-126.28
-162.47
1
A
GLU
109
76.32
-57.61
1
A
ASP
139
-144.97
43.00
1
A
ASN
151
-96.81
31.39
1
A
ASP
161
61.77
82.92
1
A
PHE
236
-101.17
75.13
24.304
0.020
0.000
0.000
0.020
0.000
-0.040
0.965
0.950
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.215
0.180
0.181
0.181
1.750
35.000
1965
39058
39058
5.000
94.720
5.200
0.083
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.101
0.103
0.800
0.800
1.200
PDB entry 1YRP
MAXIMUM LIKELIHOOD
MASK
1.750
35.000
304
2526
40
0
2182
0.015
0.022
2305
0.001
0.020
1611
1.482
1.982
3102
1.421
3.001
3911
5.740
5.000
273
33.379
23.853
109
13.419
15.000
429
20.883
15.000
18
0.112
0.200
348
0.006
0.020
2498
0.001
0.020
461
3.064
3.000
1372
1.008
3.000
556
4.454
5.000
2227
7.357
8.000
933
9.705
11.000
874
0.295
0.247
1.795
146
2778
2924
20
97.860
1.750
50.000
3BQR
41297
39150
0.061
0.061
1.022
1
15.100
8.500
94.800
0.894
1.75
1.81
2.22
3999
0.894
1.025
1
7.40
98.90
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data collection
CrystalClear
data reduction
HKL-2000
Crystal structure of human death associated protein kinase 3 (DAPK3) in complex with an imidazo-pyridazine ligand
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
MET
8
A
MET
2
HELX_P
A
ASP
11
A
ASP
5
5
1
4
A
SER
57
A
SER
51
HELX_P
A
ILE
71
A
ILE
65
1
2
15
A
GLU
100
A
GLU
94
HELX_P
A
GLU
109
A
GLU
103
1
3
10
A
THR
112
A
THR
106
HELX_P
A
LYS
133
A
LYS
127
1
4
22
A
LYS
141
A
LYS
135
HELX_P
A
GLU
143
A
GLU
137
5
5
3
A
ALA
185
A
ALA
179
HELX_P
A
ASN
190
A
ASN
184
1
6
6
A
LEU
196
A
LEU
190
HELX_P
A
GLY
213
A
GLY
207
1
7
18
A
THR
221
A
THR
215
HELX_P
A
VAL
232
A
VAL
226
1
8
12
A
ASP
237
A
ASP
231
HELX_P
A
SER
242
A
SER
236
1
9
6
A
SER
245
A
SER
239
HELX_P
A
LEU
256
A
LEU
250
1
10
12
A
ASP
259
A
ASP
253
HELX_P
A
ARG
263
A
ARG
257
5
11
5
A
THR
265
A
THR
259
HELX_P
A
HIS
272
A
HIS
266
1
12
8
A
HIS
272
A
HIS
266
HELX_P
A
ALA
277
A
ALA
271
1
13
6
TRANSFERASE
Death Associated Kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase 3, DAP like kinase, Dlk, Structural Genomics Consortium, SGC, Apoptosis, ATP-binding, Chromatin regulator, Nucleotide-binding, Nucleus, Serine/threonine-protein kinase, Transferase
DAPK3_HUMAN
UNP
1
9
O43293
VEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTD
VVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI
EAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELA
KDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDSG
9
289
3BQR
9
289
O43293
A
1
3
283
1
expression tag
SER
7
3BQR
A
O43293
UNP
1
1
expression tag
MET
8
3BQR
A
O43293
UNP
2
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
13
A
TYR
7
A
SER
21
A
SER
15
A
ALA
25
A
ALA
19
A
GLN
32
A
GLN
26
A
GLU
38
A
GLU
32
A
LYS
45
A
LYS
39
A
ASP
88
A
ASP
82
A
GLU
94
A
GLU
88
A
LEU
79
A
LEU
73
A
GLU
84
A
GLU
78
A
ILE
135
A
ILE
129
A
ALA
136
A
ALA
130
A
HIS
166
A
HIS
160
A
LYS
167
A
LYS
161
A
ILE
145
A
ILE
139
A
LEU
147
A
LEU
141
A
ILE
157
A
ILE
151
A
LEU
159
A
LEU
153
BINDING SITE FOR RESIDUE 4RB A 401
A
4RB
401
Software
13
BINDING SITE FOR RESIDUE PGO A 501
A
PGO
501
Software
2
BINDING SITE FOR RESIDUE PGO A 502
A
PGO
502
Software
3
BINDING SITE FOR RESIDUE GOL A 503
A
GOL
503
Software
6
A
GLY
20
A
GLY
14
13
1_555
A
ALA
40
A
ALA
34
13
1_555
A
LYS
42
A
LYS
36
13
1_555
A
GLU
94
A
GLU
88
13
1_555
A
LEU
95
A
LEU
89
13
1_555
A
GLU
100
A
GLU
94
13
1_555
A
MET
146
A
MET
140
13
1_555
A
ILE
160
A
ILE
154
13
1_555
A
ASP
161
A
ASP
155
13
1_555
A
HOH
588
F
HOH
13
1_555
A
HOH
632
F
HOH
13
1_555
A
HOH
637
F
HOH
13
1_555
A
HOH
656
F
HOH
13
1_555
A
ARG
69
A
ARG
63
2
1_555
A
ASP
81
A
ASP
75
2
1_555
A
TYR
234
A
TYR
228
3
1_555
A
PHE
236
A
PHE
230
3
1_555
A
ARG
253
A
ARG
247
3
1_555
A
LYS
42
A
LYS
36
6
1_555
A
ILE
44
A
ILE
38
6
1_555
A
GLU
64
A
GLU
58
6
1_555
A
ASP
161
A
ASP
155
6
1_555
A
HOH
689
F
HOH
6
1_555
A
HOH
779
F
HOH
6
1_555
96
P 43 21 2