0.005423 0.000000 0.003243 0.000000 0.014259 0.000000 0.000000 0.000000 0.010794 0.00000 0.00000 0.00000 Alian, A. Stroud, R.M. Finer-Moore, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 120.88 90.00 184.407 70.131 107.950 C10 H15 N2 O9 P 338.208 n 5-METHYLURIDINE 5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N O N 10 R C N 11 R C N 12 N O N 13 S C N 14 R C N 15 N O N 16 N O N 17 N C N 18 N O N 19 N P N 20 N O N 21 N O N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C Y 51 N N Y 52 N C Y 53 N N Y 54 N C Y 55 N C N 56 N N Y 57 N N Y 58 N C Y 59 N N Y 60 N C N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N N N 96 N C N 97 N N N 98 N N N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N N N 116 S C N 117 N C N 118 N O N 119 N C N 120 N C N 121 N O N 122 N N N 123 N O N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 S C N 134 N C N 135 N O N 136 N C N 137 N C N 138 N O N 139 N O N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 R C N 159 N O N 160 R C N 161 N N N 162 N C N 163 N O N 164 N N N 165 N C N 166 N N N 167 N C N 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 R C N 185 N C N 186 N O N 187 N C N 188 N S N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N O N 198 N P N 199 N O N 200 N O N 201 N O N 202 N C N 203 R C N 204 N O N 205 S C N 206 N O N 207 R C N 208 N O N 209 R C Y 210 N N Y 211 N C Y 212 N N Y 213 N C N 214 N C N 215 N O N 216 N N N 217 N C N 218 N N N 219 N N Y 220 N C N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N O N 243 N N N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N O N 263 N O N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 N C N 276 N C N 277 N O N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N N Y 291 N C Y 292 N C Y 293 N N N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N O N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 S C N 313 N C N 314 N C N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N C N 359 N C N 360 N N N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N S N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N C N 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N N N 438 S C N 439 N C N 440 N O N 441 N C N 442 N O N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 R C N 456 N O N 457 N C N 458 N O N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N N N 469 S C N 470 N C N 471 N O N 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N N Y 477 N C Y 478 N C Y 479 N C Y 480 N C Y 481 N C N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N N N 496 S C N 497 N C N 498 N O N 499 N C Y 500 N C Y 501 N C Y 502 N C Y 503 N C Y 504 N C Y 505 N C N 506 N O N 507 N O N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N O N 520 N P N 521 N O N 522 N O N 523 N O N 524 N C N 525 R C N 526 N O N 527 S C N 528 N O N 529 R C N 530 N O N 531 R C N 532 N N N 533 N C N 534 N O N 535 N N N 536 N C N 537 N O N 538 N C N 539 N C N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N N N 554 S C N 555 N C N 556 N O N 557 N C N 558 N C N 559 N C N 560 N O N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N sing Y 68 N sing Y 69 N doub N 70 N sing Y 71 N doub N 72 N sing N 73 N sing Y 74 N sing Y 75 N doub N 76 N sing Y 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing Y 220 N sing Y 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing Y 226 N doub N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N sing Y 294 N doub Y 295 N doub N 296 N sing Y 297 N sing N 298 N sing Y 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing Y 401 N doub Y 402 N sing Y 403 N sing N 404 N sing Y 405 N doub N 406 N sing Y 407 N doub N 408 N sing Y 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N sing Y 479 N doub N 480 N sing Y 481 N doub N 482 N sing Y 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing Y 498 N doub Y 499 N sing Y 500 N sing N 501 N sing Y 502 N doub N 503 N sing Y 504 N doub N 505 N sing Y 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N doub N 538 N sing N 539 N sing N 540 N sing N 541 N doub N 542 N sing N 543 N doub N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N doub N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing US Proc.Natl.Acad.Sci.Usa PNASA6 0040 0027-8424 105 6876 6881 10.1073/pnas.0802247105 18451029 Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases. 2008 10.2210/pdb3bt7/pdb pdb_00003bt7 100 1 CCD 2007-01-24 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 1.11 1.0 8.3.1 ALS 1.11 SYNCHROTRON ALS BEAMLINE 8.3.1 42298.137 tRNA (uracil-5-)-methyltransferase 2.1.1.35 E358Q 2 man polymer 6044.636 RNA (5'-D(P*GP*CP*UP*GP*UP*GP*(5MU)P*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*GP*C)-3') 2 syn polymer 18.015 water 261 nat water tRNAM-5-U54, methyltransferase, RUMT no no GSHMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSF PAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTAK GSHMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSF PAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTAK A,B polypeptide(L) no yes GCUGUG(5MU)UCGAUCCACAGC GCUGUGUUCGAUCCACAGC C,D polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia Escherichia coli sample trmA 562 Escherichia coli 469008 Escherichia coli BL21(DE3) BL21(DE3) Plasmid pET28b 1 3.10 60.30 VAPOR DIFFUSION, HANGING DROP 7.4 100 mM sodium cacodylate pH 7.4, 200 mM sodium sulfate, and 22 % PEG-8000, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 sodium cacodylate 1 sodium cacodylate 2 sodium sulfate 1 sodium sulfate 2 PEG-8000 1 PEG-8000 2 6.100 C 61 C 53 76.346 C_C61:G53_C 1 2.496 -0.257 -0.347 -5.180 1.671 1 20 C 62 C 52 2.112 C_A62:U52_C 2 -13.312 -0.150 0.698 -0.247 -8.697 1 19 C 63 C 51 2.065 C_C63:G51_C 3 -12.113 -0.379 0.861 -0.155 0.845 1 20 C 64 C 50 1.468 C_A64:U50_C 4 -16.619 -0.554 0.084 -0.249 5.496 1 19 C 65 C 49 -0.948 C_G65:C49_C 5 -16.057 -0.796 0.350 -0.420 10.026 1 19 C 66 C 48 0.709 C_C66:G48_C 6 -15.799 -0.149 -0.115 -0.412 -3.273 1 19 D 48 D 66 9.359 D_G48:C66_D 7 -14.173 0.258 0.303 -0.089 1.928 1 19 D 49 D 65 -6.495 D_C49:G65_D 8 -10.459 -0.018 0.080 -0.451 1.703 1 20 D 50 D 64 7.662 D_U50:A64_D 9 -13.347 0.273 0.118 0.027 -2.038 1 19 D 51 D 63 -0.930 D_G51:C63_D 10 -14.326 -0.068 0.110 -0.203 0.265 1 20 D 52 D 62 6.001 D_U52:A62_D 11 -16.688 0.045 0.219 0.020 3.644 1 19 D 53 D 61 -2.545 D_G53:C61_D 12 -6.906 0.072 0.014 -0.009 -0.683 168.921 C C 61 62 -47.114 C C 53 52 -2.730 -92.182 0.759 -3.497 CC_C61A62:U52G53_CC 1 132.189 -67.562 107.731 -2.073 -0.835 3.261 30.380 C C 62 63 5.554 C C 52 51 3.431 2.901 -0.293 -1.794 CC_A62C63:G51U52_CC 2 -3.095 5.925 30.089 -4.021 -0.080 2.796 31.007 C C 63 64 1.846 C C 51 50 2.886 0.986 -0.504 -1.595 CC_C63A64:U50G51_CC 3 2.082 -3.898 30.923 -3.148 1.291 2.809 31.297 C C 64 65 9.316 C C 50 49 3.049 4.986 0.038 -1.052 CC_A64G65:C49U50_CC 4 -4.736 8.848 30.551 -2.805 -0.881 2.962 34.399 C C 65 66 7.676 C C 49 48 3.151 4.515 0.581 -1.658 CC_G65C66:G48C49_CC 5 4.532 -7.705 33.816 -3.467 -0.316 -2.783 7.426 C D 66 48 77.930 C D 48 66 3.668 7.032 0.374 -3.410 CD_C66G48:C66G48_DC 6 -2.109 23.368 1.117 -31.954 -4.578 3.123 25.278 D D 48 49 4.031 D D 66 65 3.170 1.760 -1.082 -1.748 DD_G48C49:G65C66_DD 7 -2.200 5.038 25.123 -4.488 1.855 2.933 35.965 D D 49 50 10.227 D D 65 64 3.187 6.278 0.862 -1.554 DD_C49U50:A64G65_DD 8 2.735 -4.455 35.328 -3.361 -1.027 2.201 27.952 D D 50 51 23.343 D D 64 63 3.178 10.982 -0.268 -1.907 DD_U50G51:C63A64_DD 9 -0.718 1.527 25.734 -6.185 0.409 3.120 32.536 D D 51 52 3.195 D D 63 62 3.216 1.789 0.308 -1.534 DD_G51U52:A62C63_DD 10 -0.856 1.528 32.477 -3.041 -0.695 2.428 30.013 D D 52 53 19.988 D D 62 61 3.171 10.151 -0.356 -1.639 DD_U52G53:C61A62_DD 11 1.449 -2.853 28.245 -5.009 0.950 database_2 pdbx_entity_src_syn struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Version format compliance Derived calculations Database references Derived calculations Source and taxonomy Data collection Refinement description 1 0 2008-04-29 1 1 2011-07-13 1 2 2013-09-25 1 3 2021-10-20 1 4 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id 5-Methyluridine Methyltransferase RumA in complex with RNA and SAM 5-Methyluridine Methyltransferase RumA RCSB Y RCSB 2007-12-27 REL REL HOH water 32630 synthetic construct sample 2BH2 PDB entry 2BH2 PDB experimental model HOH 56 3 HOH HOH 367 A HOH 57 3 HOH HOH 368 A HOH 58 3 HOH HOH 369 A HOH 59 3 HOH HOH 370 A HOH 60 3 HOH HOH 371 A HOH 61 3 HOH HOH 372 A HOH 62 3 HOH HOH 373 A HOH 63 3 HOH HOH 374 A HOH 64 3 HOH HOH 375 A HOH 65 3 HOH HOH 376 A HOH 66 3 HOH HOH 377 A HOH 67 3 HOH HOH 378 A HOH 68 3 HOH HOH 379 A HOH 69 3 HOH HOH 380 A HOH 70 3 HOH HOH 381 A HOH 71 3 HOH HOH 382 A HOH 72 3 HOH HOH 383 A HOH 73 3 HOH HOH 384 A HOH 74 3 HOH HOH 385 A HOH 75 3 HOH HOH 386 A HOH 76 3 HOH HOH 387 A HOH 77 3 HOH HOH 388 A HOH 79 3 HOH HOH 389 A HOH 106 3 HOH HOH 390 A HOH 107 3 HOH HOH 391 A HOH 108 3 HOH HOH 392 A HOH 119 3 HOH HOH 393 A HOH 126 3 HOH HOH 394 A HOH 147 3 HOH HOH 395 A HOH 178 3 HOH HOH 396 A HOH 179 3 HOH HOH 397 A HOH 180 3 HOH HOH 398 A HOH 182 3 HOH HOH 399 A HOH 185 3 HOH HOH 400 A HOH 186 3 HOH HOH 401 A HOH 187 3 HOH HOH 402 A HOH 188 3 HOH HOH 403 A HOH 190 3 HOH HOH 404 A HOH 191 3 HOH HOH 405 A HOH 192 3 HOH HOH 406 A HOH 193 3 HOH HOH 407 A HOH 194 3 HOH HOH 408 A HOH 196 3 HOH HOH 410 A HOH 199 3 HOH HOH 411 A HOH 200 3 HOH HOH 412 A HOH 201 3 HOH HOH 413 A HOH 202 3 HOH HOH 414 A HOH 203 3 HOH HOH 415 A HOH 204 3 HOH HOH 416 A HOH 205 3 HOH HOH 417 A HOH 206 3 HOH HOH 418 A HOH 208 3 HOH HOH 419 A HOH 209 3 HOH HOH 420 A HOH 210 3 HOH HOH 421 A HOH 211 3 HOH HOH 422 A HOH 212 3 HOH HOH 423 A HOH 213 3 HOH HOH 424 A HOH 214 3 HOH HOH 425 A HOH 216 3 HOH HOH 426 A HOH 217 3 HOH HOH 427 A HOH 237 3 HOH HOH 428 A HOH 238 3 HOH HOH 429 A HOH 239 3 HOH HOH 430 A HOH 243 3 HOH HOH 431 A HOH 244 3 HOH HOH 432 A HOH 246 3 HOH HOH 433 A HOH 247 3 HOH HOH 434 A HOH 248 3 HOH HOH 435 A HOH 252 3 HOH HOH 436 A HOH 255 3 HOH HOH 437 A HOH 266 3 HOH HOH 438 A HOH 267 3 HOH HOH 439 A HOH 269 3 HOH HOH 440 A HOH 273 3 HOH HOH 441 A HOH 280 3 HOH HOH 442 A HOH 288 3 HOH HOH 443 A HOH 289 3 HOH HOH 444 A HOH 291 3 HOH HOH 445 A HOH 292 3 HOH HOH 446 A HOH 294 3 HOH HOH 447 A HOH 195 3 HOH HOH 409 B HOH 1 3 HOH HOH 410 B HOH 2 3 HOH HOH 411 B HOH 4 3 HOH HOH 412 B HOH 5 3 HOH HOH 413 B HOH 6 3 HOH HOH 414 B HOH 7 3 HOH HOH 415 B HOH 11 3 HOH HOH 416 B HOH 12 3 HOH HOH 417 B HOH 15 3 HOH HOH 418 B HOH 16 3 HOH HOH 419 B HOH 17 3 HOH HOH 420 B HOH 18 3 HOH HOH 421 B HOH 19 3 HOH HOH 422 B HOH 20 3 HOH HOH 423 B HOH 21 3 HOH HOH 424 B HOH 22 3 HOH HOH 425 B HOH 23 3 HOH HOH 426 B HOH 24 3 HOH HOH 427 B HOH 25 3 HOH HOH 428 B HOH 26 3 HOH HOH 429 B HOH 28 3 HOH HOH 430 B HOH 29 3 HOH HOH 431 B HOH 30 3 HOH HOH 432 B HOH 32 3 HOH HOH 433 B HOH 33 3 HOH HOH 434 B HOH 36 3 HOH HOH 435 B HOH 37 3 HOH HOH 436 B HOH 39 3 HOH HOH 437 B HOH 45 3 HOH HOH 438 B HOH 46 3 HOH HOH 439 B HOH 47 3 HOH HOH 440 B HOH 48 3 HOH HOH 441 B HOH 49 3 HOH HOH 442 B HOH 50 3 HOH HOH 443 B HOH 51 3 HOH HOH 444 B HOH 52 3 HOH HOH 445 B HOH 53 3 HOH HOH 446 B HOH 55 3 HOH HOH 447 B HOH 78 3 HOH HOH 448 B HOH 80 3 HOH HOH 449 B HOH 81 3 HOH HOH 450 B HOH 82 3 HOH HOH 451 B HOH 83 3 HOH HOH 452 B HOH 85 3 HOH HOH 453 B HOH 86 3 HOH HOH 454 B HOH 87 3 HOH HOH 455 B HOH 88 3 HOH HOH 456 B HOH 89 3 HOH HOH 457 B HOH 90 3 HOH HOH 458 B HOH 93 3 HOH HOH 459 B HOH 94 3 HOH HOH 460 B HOH 95 3 HOH HOH 461 B HOH 96 3 HOH HOH 462 B HOH 97 3 HOH HOH 463 B HOH 98 3 HOH HOH 464 B HOH 99 3 HOH HOH 465 B HOH 100 3 HOH HOH 466 B HOH 101 3 HOH HOH 467 B HOH 102 3 HOH HOH 468 B HOH 103 3 HOH HOH 469 B HOH 104 3 HOH HOH 470 B HOH 105 3 HOH HOH 471 B HOH 109 3 HOH HOH 472 B HOH 112 3 HOH HOH 473 B HOH 113 3 HOH HOH 474 B HOH 114 3 HOH HOH 475 B HOH 115 3 HOH HOH 476 B HOH 116 3 HOH HOH 477 B HOH 117 3 HOH HOH 478 B HOH 120 3 HOH HOH 479 B HOH 121 3 HOH HOH 480 B HOH 122 3 HOH HOH 481 B HOH 127 3 HOH HOH 482 B HOH 128 3 HOH HOH 483 B HOH 129 3 HOH HOH 484 B HOH 130 3 HOH HOH 485 B HOH 131 3 HOH HOH 486 B HOH 132 3 HOH HOH 487 B HOH 135 3 HOH HOH 488 B HOH 136 3 HOH HOH 489 B HOH 137 3 HOH HOH 490 B HOH 138 3 HOH HOH 491 B HOH 142 3 HOH HOH 492 B HOH 149 3 HOH HOH 493 B HOH 152 3 HOH HOH 494 B HOH 153 3 HOH HOH 495 B HOH 154 3 HOH HOH 496 B HOH 155 3 HOH HOH 497 B HOH 156 3 HOH HOH 498 B HOH 157 3 HOH HOH 499 B HOH 158 3 HOH HOH 500 B HOH 159 3 HOH HOH 501 B HOH 161 3 HOH HOH 502 B HOH 162 3 HOH HOH 503 B HOH 163 3 HOH HOH 504 B HOH 165 3 HOH HOH 505 B HOH 166 3 HOH HOH 506 B HOH 167 3 HOH HOH 507 B HOH 168 3 HOH HOH 508 B HOH 169 3 HOH HOH 509 B HOH 170 3 HOH HOH 510 B HOH 172 3 HOH HOH 511 B HOH 173 3 HOH HOH 512 B HOH 174 3 HOH HOH 513 B HOH 175 3 HOH HOH 514 B HOH 176 3 HOH HOH 515 B HOH 181 3 HOH HOH 516 B HOH 189 3 HOH HOH 517 B HOH 219 3 HOH HOH 518 B HOH 220 3 HOH HOH 519 B HOH 221 3 HOH HOH 520 B HOH 222 3 HOH HOH 521 B HOH 223 3 HOH HOH 522 B HOH 225 3 HOH HOH 523 B HOH 226 3 HOH HOH 524 B HOH 232 3 HOH HOH 525 B HOH 233 3 HOH HOH 526 B HOH 235 3 HOH HOH 527 B HOH 236 3 HOH HOH 528 B HOH 245 3 HOH HOH 529 B HOH 253 3 HOH HOH 530 B HOH 254 3 HOH HOH 531 B HOH 256 3 HOH HOH 532 B HOH 257 3 HOH HOH 533 B HOH 263 3 HOH HOH 534 B HOH 264 3 HOH HOH 535 B HOH 265 3 HOH HOH 536 B HOH 268 3 HOH HOH 537 B HOH 270 3 HOH HOH 538 B HOH 271 3 HOH HOH 539 B HOH 274 3 HOH HOH 540 B HOH 282 3 HOH HOH 541 B HOH 283 3 HOH HOH 542 B HOH 286 3 HOH HOH 543 B HOH 287 3 HOH HOH 544 B HOH 293 3 HOH HOH 545 B HOH 125 3 HOH HOH 125 C HOH 145 3 HOH HOH 145 C HOH 148 3 HOH HOH 148 C HOH 183 3 HOH HOH 183 C HOH 184 3 HOH HOH 184 C HOH 207 3 HOH HOH 207 C HOH 218 3 HOH HOH 218 C HOH 234 3 HOH HOH 234 C HOH 240 3 HOH HOH 240 C HOH 242 3 HOH HOH 242 C HOH 249 3 HOH HOH 249 C HOH 250 3 HOH HOH 250 C HOH 8 3 HOH HOH 67 D HOH 9 3 HOH HOH 68 D HOH 10 3 HOH HOH 69 D HOH 13 3 HOH HOH 70 D HOH 14 3 HOH HOH 71 D HOH 34 3 HOH HOH 72 D HOH 35 3 HOH HOH 73 D HOH 38 3 HOH HOH 74 D HOH 40 3 HOH HOH 75 D HOH 41 3 HOH HOH 76 D HOH 42 3 HOH HOH 77 D HOH 43 3 HOH HOH 78 D HOH 44 3 HOH HOH 79 D HOH 54 3 HOH HOH 80 D HOH 84 3 HOH HOH 81 D HOH 91 3 HOH HOH 82 D HOH 92 3 HOH HOH 83 D HOH 110 3 HOH HOH 84 D HOH 118 3 HOH HOH 85 D HOH 123 3 HOH HOH 86 D HOH 124 3 HOH HOH 87 D HOH 139 3 HOH HOH 88 D HOH 140 3 HOH HOH 89 D HOH 141 3 HOH HOH 90 D HOH 150 3 HOH HOH 91 D HOH 151 3 HOH HOH 92 D HOH 160 3 HOH HOH 93 D HOH 164 3 HOH HOH 94 D HOH 227 3 HOH HOH 95 D HOH 230 3 HOH HOH 96 D HOH 231 3 HOH HOH 97 D HOH 285 3 HOH HOH 98 D GLY -2 n 1 GLY -2 A SER -1 n 2 SER -1 A HIS 0 n 3 HIS 0 A MET 1 n 4 MET 1 A THR 2 n 5 THR 2 A PRO 3 n 6 PRO 3 A GLU 4 n 7 GLU 4 A HIS 5 n 8 HIS 5 A LEU 6 n 9 LEU 6 A PRO 7 n 10 PRO 7 A THR 8 n 11 THR 8 A GLU 9 n 12 GLU 9 A GLN 10 n 13 GLN 10 A TYR 11 n 14 TYR 11 A GLU 12 n 15 GLU 12 A ALA 13 n 16 ALA 13 A GLN 14 n 17 GLN 14 A LEU 15 n 18 LEU 15 A ALA 16 n 19 ALA 16 A GLU 17 n 20 GLU 17 A LYS 18 n 21 LYS 18 A VAL 19 n 22 VAL 19 A VAL 20 n 23 VAL 20 A ARG 21 n 24 ARG 21 A LEU 22 n 25 LEU 22 A GLN 23 n 26 GLN 23 A SER 24 n 27 SER 24 A MET 25 n 28 MET 25 A MET 26 n 29 MET 26 A ALA 27 n 30 ALA 27 A PRO 28 n 31 PRO 28 A PHE 29 n 32 PHE 29 A SER 30 n 33 SER 30 A ASP 31 n 34 ASP 31 A LEU 32 n 35 LEU 32 A VAL 33 n 36 VAL 33 A PRO 34 n 37 PRO 34 A GLU 35 n 38 GLU 35 A VAL 36 n 39 VAL 36 A PHE 37 n 40 PHE 37 A ARG 38 n 41 ARG 38 A SER 39 n 42 SER 39 A PRO 40 n 43 PRO 40 A VAL 41 n 44 VAL 41 A SER 42 n 45 SER 42 A HIS 43 n 46 HIS 43 A TYR 44 n 47 TYR 44 A ARG 45 n 48 ARG 45 A MET 46 n 49 MET 46 A ARG 47 n 50 ARG 47 A ALA 48 n 51 ALA 48 A GLU 49 n 52 GLU 49 A PHE 50 n 53 PHE 50 A ARG 51 n 54 ARG 51 A ILE 52 n 55 ILE 52 A TRP 53 n 56 TRP 53 A HIS 54 n 57 HIS 54 A ASP 55 n 58 ASP 55 A GLY 56 n 59 GLY 56 A ASP 57 n 60 ASP 57 A ASP 58 n 61 ASP 58 A LEU 59 n 62 LEU 59 A TYR 60 n 63 TYR 60 A HIS 61 n 64 HIS 61 A ILE 62 n 65 ILE 62 A ILE 63 n 66 ILE 63 A PHE 64 n 67 PHE 64 A ASP 65 n 68 ASP 65 A GLN 66 n 69 GLN 66 A GLN 67 n 70 GLN 67 A THR 68 n 71 THR 68 A LYS 69 n 72 LYS 69 A SER 70 n 73 SER 70 A ARG 71 n 74 ARG 71 A ILE 72 n 75 ILE 72 A ARG 73 n 76 ARG 73 A VAL 74 n 77 VAL 74 A ASP 75 n 78 ASP 75 A SER 76 n 79 SER 76 A PHE 77 n 80 PHE 77 A PRO 78 n 81 PRO 78 A ALA 79 n 82 ALA 79 A ALA 80 n 83 ALA 80 A SER 81 n 84 SER 81 A GLU 82 n 85 GLU 82 A LEU 83 n 86 LEU 83 A ILE 84 n 87 ILE 84 A ASN 85 n 88 ASN 85 A GLN 86 n 89 GLN 86 A LEU 87 n 90 LEU 87 A MET 88 n 91 MET 88 A THR 89 n 92 THR 89 A ALA 90 n 93 ALA 90 A MET 91 n 94 MET 91 A ILE 92 n 95 ILE 92 A ALA 93 n 96 ALA 93 A GLY 94 n 97 GLY 94 A VAL 95 n 98 VAL 95 A ARG 96 n 99 ARG 96 A ASN 97 n 100 ASN 97 A ASN 98 n 101 ASN 98 A PRO 99 n 102 PRO 99 A VAL 100 n 103 VAL 100 A LEU 101 n 104 LEU 101 A ARG 102 n 105 ARG 102 A HIS 103 n 106 HIS 103 A LYS 104 n 107 LYS 104 A LEU 105 n 108 LEU 105 A PHE 106 n 109 PHE 106 A GLN 107 n 110 GLN 107 A ILE 108 n 111 ILE 108 A ASP 109 n 112 ASP 109 A TYR 110 n 113 TYR 110 A LEU 111 n 114 LEU 111 A THR 112 n 115 THR 112 A THR 113 n 116 THR 113 A LEU 114 n 117 LEU 114 A SER 115 n 118 SER 115 A ASN 116 n 119 ASN 116 A GLN 117 n 120 GLN 117 A ALA 118 n 121 ALA 118 A VAL 119 n 122 VAL 119 A VAL 120 n 123 VAL 120 A SER 121 n 124 SER 121 A LEU 122 n 125 LEU 122 A LEU 123 n 126 LEU 123 A TYR 124 n 127 TYR 124 A HIS 125 n 128 HIS 125 A LYS 126 n 129 LYS 126 A LYS 127 n 130 LYS 127 A LEU 128 n 131 LEU 128 A ASP 129 n 132 ASP 129 A ASP 130 n 133 ASP 130 A GLU 131 n 134 GLU 131 A TRP 132 n 135 TRP 132 A ARG 133 n 136 ARG 133 A GLN 134 n 137 GLN 134 A GLU 135 n 138 GLU 135 A ALA 136 n 139 ALA 136 A GLU 137 n 140 GLU 137 A ALA 138 n 141 ALA 138 A LEU 139 n 142 LEU 139 A ARG 140 n 143 ARG 140 A ASP 141 n 144 ASP 141 A ALA 142 n 145 ALA 142 A LEU 143 n 146 LEU 143 A ARG 144 n 147 ARG 144 A ALA 145 n 148 ALA 145 A GLN 146 n 149 GLN 146 A ASN 147 n 150 ASN 147 A LEU 148 n 151 LEU 148 A ASN 149 n 152 ASN 149 A VAL 150 n 153 VAL 150 A HIS 151 n 154 HIS 151 A LEU 152 n 155 LEU 152 A ILE 153 n 156 ILE 153 A GLY 154 n 157 GLY 154 A ARG 155 n 158 ARG 155 A ALA 156 n 159 ALA 156 A THR 157 n 160 THR 157 A LYS 158 n 161 LYS 158 A THR 159 n 162 THR 159 A LYS 160 n 163 LYS 160 A ILE 161 n 164 ILE 161 A GLU 162 n 165 GLU 162 A LEU 163 n 166 LEU 163 A ASP 164 n 167 ASP 164 A GLN 165 n 168 GLN 165 A ASP 166 n 169 ASP 166 A TYR 167 n 170 TYR 167 A ILE 168 n 171 ILE 168 A ASP 169 n 172 ASP 169 A GLU 170 n 173 GLU 170 A ARG 171 n 174 ARG 171 A LEU 172 n 175 LEU 172 A PRO 173 n 176 PRO 173 A VAL 174 n 177 VAL 174 A ALA 175 n 178 ALA 175 A GLY 176 n 179 GLY 176 A LYS 177 n 180 LYS 177 A GLU 178 n 181 GLU 178 A MET 179 n 182 MET 179 A ILE 180 n 183 ILE 180 A TYR 181 n 184 TYR 181 A ARG 182 n 185 ARG 182 A GLN 183 n 186 GLN 183 A VAL 184 n 187 VAL 184 A GLU 185 n 188 GLU 185 A ASN 186 n 189 ASN 186 A SER 187 n 190 SER 187 A PHE 188 n 191 PHE 188 A THR 189 n 192 THR 189 A GLN 190 n 193 GLN 190 A PRO 191 n 194 PRO 191 A ASN 192 n 195 ASN 192 A ALA 193 n 196 ALA 193 A ALA 194 n 197 ALA 194 A MET 195 n 198 MET 195 A ASN 196 n 199 ASN 196 A ILE 197 n 200 ILE 197 A GLN 198 n 201 GLN 198 A MET 199 n 202 MET 199 A LEU 200 n 203 LEU 200 A GLU 201 n 204 GLU 201 A TRP 202 n 205 TRP 202 A ALA 203 n 206 ALA 203 A LEU 204 n 207 LEU 204 A ASP 205 n 208 ASP 205 A VAL 206 n 209 VAL 206 A THR 207 n 210 THR 207 A LYS 208 n 211 LYS 208 A GLY 209 n 212 GLY 209 A SER 210 n 213 SER 210 A LYS 211 n 214 LYS 211 A GLY 212 n 215 GLY 212 A ASP 213 n 216 ASP 213 A LEU 214 n 217 LEU 214 A LEU 215 n 218 LEU 215 A GLU 216 n 219 GLU 216 A LEU 217 n 220 LEU 217 A TYR 218 n 221 TYR 218 A CYS 219 n 222 CYS 219 A GLY 220 n 223 GLY 220 A ASN 221 n 224 ASN 221 A GLY 222 n 225 GLY 222 A ASN 223 n 226 ASN 223 A PHE 224 n 227 PHE 224 A SER 225 n 228 SER 225 A LEU 226 n 229 LEU 226 A ALA 227 n 230 ALA 227 A LEU 228 n 231 LEU 228 A ALA 229 n 232 ALA 229 A ARG 230 n 233 ARG 230 A ASN 231 n 234 ASN 231 A PHE 232 n 235 PHE 232 A ASP 233 n 236 ASP 233 A ARG 234 n 237 ARG 234 A VAL 235 n 238 VAL 235 A LEU 236 n 239 LEU 236 A ALA 237 n 240 ALA 237 A THR 238 n 241 THR 238 A GLU 239 n 242 GLU 239 A ILE 240 n 243 ILE 240 A ALA 241 n 244 ALA 241 A LYS 242 n 245 LYS 242 A PRO 243 n 246 PRO 243 A SER 244 n 247 SER 244 A VAL 245 n 248 VAL 245 A ALA 246 n 249 ALA 246 A ALA 247 n 250 ALA 247 A ALA 248 n 251 ALA 248 A GLN 249 n 252 GLN 249 A TYR 250 n 253 TYR 250 A ASN 251 n 254 ASN 251 A ILE 252 n 255 ILE 252 A ALA 253 n 256 ALA 253 A ALA 254 n 257 ALA 254 A ASN 255 n 258 ASN 255 A HIS 256 n 259 HIS 256 A ILE 257 n 260 ILE 257 A ASP 258 n 261 ASP 258 A ASN 259 n 262 ASN 259 A VAL 260 n 263 VAL 260 A GLN 261 n 264 GLN 261 A ILE 262 n 265 ILE 262 A ILE 263 n 266 ILE 263 A ARG 264 n 267 ARG 264 A MET 265 n 268 MET 265 A ALA 266 n 269 ALA 266 A ALA 267 n 270 ALA 267 A GLU 268 n 271 GLU 268 A GLU 269 n 272 GLU 269 A PHE 270 n 273 PHE 270 A THR 271 n 274 THR 271 A GLN 272 n 275 GLN 272 A ALA 273 n 276 ALA 273 A MET 274 n 277 MET 274 A ASN 275 n 278 ASN 275 A GLY 276 n 279 GLY 276 A VAL 277 n 280 VAL 277 A ARG 278 n 281 ARG 278 A GLU 279 n 282 GLU 279 A PHE 280 n 283 PHE 280 A ASN 281 n 284 ASN 281 A ARG 282 n 285 ARG 282 A LEU 283 n 286 LEU 283 A GLN 284 n 287 GLN 284 A GLY 285 n 288 GLY 285 A ILE 286 n 289 ILE 286 A ASP 287 n 290 ASP 287 A LEU 288 n 291 LEU 288 A LYS 289 n 292 LYS 289 A SER 290 n 293 SER 290 A TYR 291 n 294 TYR 291 A GLN 292 n 295 GLN 292 A CYS 293 n 296 CYS 293 A GLU 294 n 297 GLU 294 A THR 295 n 298 THR 295 A ILE 296 n 299 ILE 296 A PHE 297 n 300 PHE 297 A VAL 298 n 301 VAL 298 A ASP 299 n 302 ASP 299 A PRO 300 n 303 PRO 300 A PRO 301 n 304 PRO 301 A ARG 302 n 305 ARG 302 A SER 303 n 306 SER 303 A GLY 304 n 307 GLY 304 A LEU 305 n 308 LEU 305 A ASP 306 n 309 ASP 306 A SER 307 n 310 SER 307 A GLU 308 n 311 GLU 308 A THR 309 n 312 THR 309 A GLU 310 n 313 GLU 310 A LYS 311 n 314 LYS 311 A MET 312 n 315 MET 312 A VAL 313 n 316 VAL 313 A GLN 314 n 317 GLN 314 A ALA 315 n 318 ALA 315 A TYR 316 n 319 TYR 316 A PRO 317 n 320 PRO 317 A ARG 318 n 321 ARG 318 A ILE 319 n 322 ILE 319 A LEU 320 n 323 LEU 320 A TYR 321 n 324 TYR 321 A ILE 322 n 325 ILE 322 A SER 323 n 326 SER 323 A CYS 324 n 327 CYS 324 A ASN 325 n 328 ASN 325 A PRO 326 n 329 PRO 326 A GLU 327 n 330 GLU 327 A THR 328 n 331 THR 328 A LEU 329 n 332 LEU 329 A CYS 330 n 333 CYS 330 A LYS 331 n 334 LYS 331 A ASN 332 n 335 ASN 332 A LEU 333 n 336 LEU 333 A GLU 334 n 337 GLU 334 A THR 335 n 338 THR 335 A LEU 336 n 339 LEU 336 A SER 337 n 340 SER 337 A GLN 338 n 341 GLN 338 A THR 339 n 342 THR 339 A HIS 340 n 343 HIS 340 A LYS 341 n 344 LYS 341 A VAL 342 n 345 VAL 342 A GLU 343 n 346 GLU 343 A ARG 344 n 347 ARG 344 A LEU 345 n 348 LEU 345 A ALA 346 n 349 ALA 346 A LEU 347 n 350 LEU 347 A PHE 348 n 351 PHE 348 A ASP 349 n 352 ASP 349 A GLN 350 n 353 GLN 350 A PHE 351 n 354 PHE 351 A PRO 352 n 355 PRO 352 A TYR 353 n 356 TYR 353 A THR 354 n 357 THR 354 A HIS 355 n 358 HIS 355 A HIS 356 n 359 HIS 356 A MET 357 n 360 MET 357 A GLN 358 n 361 GLN 358 A CYS 359 n 362 CYS 359 A GLY 360 n 363 GLY 360 A VAL 361 n 364 VAL 361 A LEU 362 n 365 LEU 362 A LEU 363 n 366 LEU 363 A THR 364 n 367 THR 364 A ALA 365 n 368 ALA 365 A LYS 366 n 369 LYS 366 A GLY -2 n 1 GLY -2 B SER -1 n 2 SER -1 B HIS 0 n 3 HIS 0 B MET 1 n 4 MET 1 B THR 2 n 5 THR 2 B PRO 3 n 6 PRO 3 B GLU 4 n 7 GLU 4 B HIS 5 n 8 HIS 5 B LEU 6 n 9 LEU 6 B PRO 7 n 10 PRO 7 B THR 8 n 11 THR 8 B GLU 9 n 12 GLU 9 B GLN 10 n 13 GLN 10 B TYR 11 n 14 TYR 11 B GLU 12 n 15 GLU 12 B ALA 13 n 16 ALA 13 B GLN 14 n 17 GLN 14 B LEU 15 n 18 LEU 15 B ALA 16 n 19 ALA 16 B GLU 17 n 20 GLU 17 B LYS 18 n 21 LYS 18 B VAL 19 n 22 VAL 19 B VAL 20 n 23 VAL 20 B ARG 21 n 24 ARG 21 B LEU 22 n 25 LEU 22 B GLN 23 n 26 GLN 23 B SER 24 n 27 SER 24 B MET 25 n 28 MET 25 B MET 26 n 29 MET 26 B ALA 27 n 30 ALA 27 B PRO 28 n 31 PRO 28 B PHE 29 n 32 PHE 29 B SER 30 n 33 SER 30 B ASP 31 n 34 ASP 31 B LEU 32 n 35 LEU 32 B VAL 33 n 36 VAL 33 B PRO 34 n 37 PRO 34 B GLU 35 n 38 GLU 35 B VAL 36 n 39 VAL 36 B PHE 37 n 40 PHE 37 B ARG 38 n 41 ARG 38 B SER 39 n 42 SER 39 B PRO 40 n 43 PRO 40 B VAL 41 n 44 VAL 41 B SER 42 n 45 SER 42 B HIS 43 n 46 HIS 43 B TYR 44 n 47 TYR 44 B ARG 45 n 48 ARG 45 B MET 46 n 49 MET 46 B ARG 47 n 50 ARG 47 B ALA 48 n 51 ALA 48 B GLU 49 n 52 GLU 49 B PHE 50 n 53 PHE 50 B ARG 51 n 54 ARG 51 B ILE 52 n 55 ILE 52 B TRP 53 n 56 TRP 53 B HIS 54 n 57 HIS 54 B ASP 55 n 58 ASP 55 B GLY 56 n 59 GLY 56 B ASP 57 n 60 ASP 57 B ASP 58 n 61 ASP 58 B LEU 59 n 62 LEU 59 B TYR 60 n 63 TYR 60 B HIS 61 n 64 HIS 61 B ILE 62 n 65 ILE 62 B ILE 63 n 66 ILE 63 B PHE 64 n 67 PHE 64 B ASP 65 n 68 ASP 65 B GLN 66 n 69 GLN 66 B GLN 67 n 70 GLN 67 B THR 68 n 71 THR 68 B LYS 69 n 72 LYS 69 B SER 70 n 73 SER 70 B ARG 71 n 74 ARG 71 B ILE 72 n 75 ILE 72 B ARG 73 n 76 ARG 73 B VAL 74 n 77 VAL 74 B ASP 75 n 78 ASP 75 B SER 76 n 79 SER 76 B PHE 77 n 80 PHE 77 B PRO 78 n 81 PRO 78 B ALA 79 n 82 ALA 79 B ALA 80 n 83 ALA 80 B SER 81 n 84 SER 81 B GLU 82 n 85 GLU 82 B LEU 83 n 86 LEU 83 B ILE 84 n 87 ILE 84 B ASN 85 n 88 ASN 85 B GLN 86 n 89 GLN 86 B LEU 87 n 90 LEU 87 B MET 88 n 91 MET 88 B THR 89 n 92 THR 89 B ALA 90 n 93 ALA 90 B MET 91 n 94 MET 91 B ILE 92 n 95 ILE 92 B ALA 93 n 96 ALA 93 B GLY 94 n 97 GLY 94 B VAL 95 n 98 VAL 95 B ARG 96 n 99 ARG 96 B ASN 97 n 100 ASN 97 B ASN 98 n 101 ASN 98 B PRO 99 n 102 PRO 99 B VAL 100 n 103 VAL 100 B LEU 101 n 104 LEU 101 B ARG 102 n 105 ARG 102 B HIS 103 n 106 HIS 103 B LYS 104 n 107 LYS 104 B LEU 105 n 108 LEU 105 B PHE 106 n 109 PHE 106 B GLN 107 n 110 GLN 107 B ILE 108 n 111 ILE 108 B ASP 109 n 112 ASP 109 B TYR 110 n 113 TYR 110 B LEU 111 n 114 LEU 111 B THR 112 n 115 THR 112 B THR 113 n 116 THR 113 B LEU 114 n 117 LEU 114 B SER 115 n 118 SER 115 B ASN 116 n 119 ASN 116 B GLN 117 n 120 GLN 117 B ALA 118 n 121 ALA 118 B VAL 119 n 122 VAL 119 B VAL 120 n 123 VAL 120 B SER 121 n 124 SER 121 B LEU 122 n 125 LEU 122 B LEU 123 n 126 LEU 123 B TYR 124 n 127 TYR 124 B HIS 125 n 128 HIS 125 B LYS 126 n 129 LYS 126 B LYS 127 n 130 LYS 127 B LEU 128 n 131 LEU 128 B ASP 129 n 132 ASP 129 B ASP 130 n 133 ASP 130 B GLU 131 n 134 GLU 131 B TRP 132 n 135 TRP 132 B ARG 133 n 136 ARG 133 B GLN 134 n 137 GLN 134 B GLU 135 n 138 GLU 135 B ALA 136 n 139 ALA 136 B GLU 137 n 140 GLU 137 B ALA 138 n 141 ALA 138 B LEU 139 n 142 LEU 139 B ARG 140 n 143 ARG 140 B ASP 141 n 144 ASP 141 B ALA 142 n 145 ALA 142 B LEU 143 n 146 LEU 143 B ARG 144 n 147 ARG 144 B ALA 145 n 148 ALA 145 B GLN 146 n 149 GLN 146 B ASN 147 n 150 ASN 147 B LEU 148 n 151 LEU 148 B ASN 149 n 152 ASN 149 B VAL 150 n 153 VAL 150 B HIS 151 n 154 HIS 151 B LEU 152 n 155 LEU 152 B ILE 153 n 156 ILE 153 B GLY 154 n 157 GLY 154 B ARG 155 n 158 ARG 155 B ALA 156 n 159 ALA 156 B THR 157 n 160 THR 157 B LYS 158 n 161 LYS 158 B THR 159 n 162 THR 159 B LYS 160 n 163 LYS 160 B ILE 161 n 164 ILE 161 B GLU 162 n 165 GLU 162 B LEU 163 n 166 LEU 163 B ASP 164 n 167 ASP 164 B GLN 165 n 168 GLN 165 B ASP 166 n 169 ASP 166 B TYR 167 n 170 TYR 167 B ILE 168 n 171 ILE 168 B ASP 169 n 172 ASP 169 B GLU 170 n 173 GLU 170 B ARG 171 n 174 ARG 171 B LEU 172 n 175 LEU 172 B PRO 173 n 176 PRO 173 B VAL 174 n 177 VAL 174 B ALA 175 n 178 ALA 175 B GLY 176 n 179 GLY 176 B LYS 177 n 180 LYS 177 B GLU 178 n 181 GLU 178 B MET 179 n 182 MET 179 B ILE 180 n 183 ILE 180 B TYR 181 n 184 TYR 181 B ARG 182 n 185 ARG 182 B GLN 183 n 186 GLN 183 B VAL 184 n 187 VAL 184 B GLU 185 n 188 GLU 185 B ASN 186 n 189 ASN 186 B SER 187 n 190 SER 187 B PHE 188 n 191 PHE 188 B THR 189 n 192 THR 189 B GLN 190 n 193 GLN 190 B PRO 191 n 194 PRO 191 B ASN 192 n 195 ASN 192 B ALA 193 n 196 ALA 193 B ALA 194 n 197 ALA 194 B MET 195 n 198 MET 195 B ASN 196 n 199 ASN 196 B ILE 197 n 200 ILE 197 B GLN 198 n 201 GLN 198 B MET 199 n 202 MET 199 B LEU 200 n 203 LEU 200 B GLU 201 n 204 GLU 201 B TRP 202 n 205 TRP 202 B ALA 203 n 206 ALA 203 B LEU 204 n 207 LEU 204 B ASP 205 n 208 ASP 205 B VAL 206 n 209 VAL 206 B THR 207 n 210 THR 207 B LYS 208 n 211 LYS 208 B GLY 209 n 212 GLY 209 B SER 210 n 213 SER 210 B LYS 211 n 214 LYS 211 B GLY 212 n 215 GLY 212 B ASP 213 n 216 ASP 213 B LEU 214 n 217 LEU 214 B LEU 215 n 218 LEU 215 B GLU 216 n 219 GLU 216 B LEU 217 n 220 LEU 217 B TYR 218 n 221 TYR 218 B CYS 219 n 222 CYS 219 B GLY 220 n 223 GLY 220 B ASN 221 n 224 ASN 221 B GLY 222 n 225 GLY 222 B ASN 223 n 226 ASN 223 B PHE 224 n 227 PHE 224 B SER 225 n 228 SER 225 B LEU 226 n 229 LEU 226 B ALA 227 n 230 ALA 227 B LEU 228 n 231 LEU 228 B ALA 229 n 232 ALA 229 B ARG 230 n 233 ARG 230 B ASN 231 n 234 ASN 231 B PHE 232 n 235 PHE 232 B ASP 233 n 236 ASP 233 B ARG 234 n 237 ARG 234 B VAL 235 n 238 VAL 235 B LEU 236 n 239 LEU 236 B ALA 237 n 240 ALA 237 B THR 238 n 241 THR 238 B GLU 239 n 242 GLU 239 B ILE 240 n 243 ILE 240 B ALA 241 n 244 ALA 241 B LYS 242 n 245 LYS 242 B PRO 243 n 246 PRO 243 B SER 244 n 247 SER 244 B VAL 245 n 248 VAL 245 B ALA 246 n 249 ALA 246 B ALA 247 n 250 ALA 247 B ALA 248 n 251 ALA 248 B GLN 249 n 252 GLN 249 B TYR 250 n 253 TYR 250 B ASN 251 n 254 ASN 251 B ILE 252 n 255 ILE 252 B ALA 253 n 256 ALA 253 B ALA 254 n 257 ALA 254 B ASN 255 n 258 ASN 255 B HIS 256 n 259 HIS 256 B ILE 257 n 260 ILE 257 B ASP 258 n 261 ASP 258 B ASN 259 n 262 ASN 259 B VAL 260 n 263 VAL 260 B GLN 261 n 264 GLN 261 B ILE 262 n 265 ILE 262 B ILE 263 n 266 ILE 263 B ARG 264 n 267 ARG 264 B MET 265 n 268 MET 265 B ALA 266 n 269 ALA 266 B ALA 267 n 270 ALA 267 B GLU 268 n 271 GLU 268 B GLU 269 n 272 GLU 269 B PHE 270 n 273 PHE 270 B THR 271 n 274 THR 271 B GLN 272 n 275 GLN 272 B ALA 273 n 276 ALA 273 B MET 274 n 277 MET 274 B ASN 275 n 278 ASN 275 B GLY 276 n 279 GLY 276 B VAL 277 n 280 VAL 277 B ARG 278 n 281 ARG 278 B GLU 279 n 282 GLU 279 B PHE 280 n 283 PHE 280 B ASN 281 n 284 ASN 281 B ARG 282 n 285 ARG 282 B LEU 283 n 286 LEU 283 B GLN 284 n 287 GLN 284 B GLY 285 n 288 GLY 285 B ILE 286 n 289 ILE 286 B ASP 287 n 290 ASP 287 B LEU 288 n 291 LEU 288 B LYS 289 n 292 LYS 289 B SER 290 n 293 SER 290 B TYR 291 n 294 TYR 291 B GLN 292 n 295 GLN 292 B CYS 293 n 296 CYS 293 B GLU 294 n 297 GLU 294 B THR 295 n 298 THR 295 B ILE 296 n 299 ILE 296 B PHE 297 n 300 PHE 297 B VAL 298 n 301 VAL 298 B ASP 299 n 302 ASP 299 B PRO 300 n 303 PRO 300 B PRO 301 n 304 PRO 301 B ARG 302 n 305 ARG 302 B SER 303 n 306 SER 303 B GLY 304 n 307 GLY 304 B LEU 305 n 308 LEU 305 B ASP 306 n 309 ASP 306 B SER 307 n 310 SER 307 B GLU 308 n 311 GLU 308 B THR 309 n 312 THR 309 B GLU 310 n 313 GLU 310 B LYS 311 n 314 LYS 311 B MET 312 n 315 MET 312 B VAL 313 n 316 VAL 313 B GLN 314 n 317 GLN 314 B ALA 315 n 318 ALA 315 B TYR 316 n 319 TYR 316 B PRO 317 n 320 PRO 317 B ARG 318 n 321 ARG 318 B ILE 319 n 322 ILE 319 B LEU 320 n 323 LEU 320 B TYR 321 n 324 TYR 321 B ILE 322 n 325 ILE 322 B SER 323 n 326 SER 323 B CYS 324 n 327 CYS 324 B ASN 325 n 328 ASN 325 B PRO 326 n 329 PRO 326 B GLU 327 n 330 GLU 327 B THR 328 n 331 THR 328 B LEU 329 n 332 LEU 329 B CYS 330 n 333 CYS 330 B LYS 331 n 334 LYS 331 B ASN 332 n 335 ASN 332 B LEU 333 n 336 LEU 333 B GLU 334 n 337 GLU 334 B THR 335 n 338 THR 335 B LEU 336 n 339 LEU 336 B SER 337 n 340 SER 337 B GLN 338 n 341 GLN 338 B THR 339 n 342 THR 339 B HIS 340 n 343 HIS 340 B LYS 341 n 344 LYS 341 B VAL 342 n 345 VAL 342 B GLU 343 n 346 GLU 343 B ARG 344 n 347 ARG 344 B LEU 345 n 348 LEU 345 B ALA 346 n 349 ALA 346 B LEU 347 n 350 LEU 347 B PHE 348 n 351 PHE 348 B ASP 349 n 352 ASP 349 B GLN 350 n 353 GLN 350 B PHE 351 n 354 PHE 351 B PRO 352 n 355 PRO 352 B TYR 353 n 356 TYR 353 B THR 354 n 357 THR 354 B HIS 355 n 358 HIS 355 B HIS 356 n 359 HIS 356 B MET 357 n 360 MET 357 B GLN 358 n 361 GLN 358 B CYS 359 n 362 CYS 359 B GLY 360 n 363 GLY 360 B VAL 361 n 364 VAL 361 B LEU 362 n 365 LEU 362 B LEU 363 n 366 LEU 363 B THR 364 n 367 THR 364 B ALA 365 n 368 ALA 365 B LYS 366 n 369 LYS 366 B G 48 n 1 G 48 C C 49 n 2 C 49 C U 50 n 3 U 50 C G 51 n 4 G 51 C U 52 n 5 U 52 C G 53 n 6 G 53 C 5MU 54 n 7 5MU 54 C U 55 n 8 U 55 C C 56 n 9 C 56 C G 57 n 10 G 57 C A 58 n 11 A 58 C U 59 n 12 U 59 C C 60 n 13 C 60 C C 61 n 14 C 61 C A 62 n 15 A 62 C C 63 n 16 C 63 C A 64 n 17 A 64 C G 65 n 18 G 65 C C 66 n 19 C 66 C G 48 n 1 G 48 D C 49 n 2 C 49 D U 50 n 3 U 50 D G 51 n 4 G 51 D U 52 n 5 U 52 D G 53 n 6 G 53 D 5MU 54 n 7 5MU 54 D U 55 n 8 U 55 D C 56 n 9 C 56 D G 57 n 10 G 57 D A 58 n 11 A 58 D U 59 n 12 U 59 D C 60 n 13 C 60 D C 61 n 14 C 61 D A 62 n 15 A 62 D C 63 n 16 C 63 D A 64 n 17 A 64 D G 65 n 18 G 65 D C 66 n 19 C 66 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 2580 -17 18310 2590 -20 18480 C 5MU 54 5-METHYLURIDINE 5'-MONOPHOSPHATE C 5MU 7 U D 5MU 54 5-METHYLURIDINE 5'-MONOPHOSPHATE D 5MU 7 U 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 35 A N GLU 38 A O LEU 345 A O LEU 348 A N GLU 343 A N GLU 346 A O LEU 362 A O LEU 365 A O LEU 363 A O LEU 366 A N ILE 319 A N ILE 322 A O ARG 318 A O ARG 321 A N ILE 296 A N ILE 299 A O PHE 297 A O PHE 300 A N LEU 215 A N LEU 218 A N LEU 214 A N LEU 217 A O LEU 236 A O LEU 239 A N VAL 235 A N VAL 238 A O GLN 261 A O GLN 264 A O ILE 72 A O ILE 75 A N ILE 63 A N ILE 66 A O ASP 58 A O ASP 61 A N ASP 55 A N ASP 58 A N ILE 52 A N ILE 55 A O PHE 106 A O PHE 109 A N ASP 109 A N ASP 112 A O SER 121 A O SER 124 A N LEU 122 A N LEU 125 A O ILE 153 A O ILE 156 A N ALA 156 A N ALA 159 A O THR 159 A O THR 162 A N ILE 168 A N ILE 171 A O GLN 183 A O GLN 186 B N GLU 35 B N GLU 38 B O LEU 345 B O LEU 348 B N GLU 343 B N GLU 346 B O LEU 362 B O LEU 365 B O LEU 363 B O LEU 366 B N ILE 319 B N ILE 322 B O LEU 320 B O LEU 323 B N VAL 298 B N VAL 301 B O PHE 297 B O PHE 300 B N LEU 215 B N LEU 218 B N GLU 216 B N GLU 219 B O THR 238 B O THR 241 B N VAL 235 B N VAL 238 B O GLN 261 B O GLN 264 B O ILE 72 B O ILE 75 B N ILE 63 B N ILE 66 B O ASP 58 B O ASP 61 B N ASP 55 B N ASP 58 B N ILE 52 B N ILE 55 B O PHE 106 B O PHE 109 B N ASP 109 B N ASP 112 B O SER 121 B O SER 124 B N VAL 120 B N VAL 123 B O HIS 151 B O HIS 154 B N ALA 156 B N ALA 159 B O THR 159 B O THR 162 B N GLU 170 B N GLU 173 B O TYR 181 B O TYR 184 1 A CG LYS 69 A CG LYS 72 1 Y 1 A CD LYS 69 A CD LYS 72 1 Y 1 A CE LYS 69 A CE LYS 72 1 Y 1 A NZ LYS 69 A NZ LYS 72 1 Y 1 A CG LYS 242 A CG LYS 245 1 Y 1 A CD LYS 242 A CD LYS 245 1 Y 1 A CE LYS 242 A CE LYS 245 1 Y 1 A NZ LYS 242 A NZ LYS 245 1 Y 1 A CG LYS 341 A CG LYS 344 1 Y 1 A CD LYS 341 A CD LYS 344 1 Y 1 A CE LYS 341 A CE LYS 344 1 Y 1 A NZ LYS 341 A NZ LYS 344 1 Y 1 B CG LYS 242 B CG LYS 245 1 Y 1 B CD LYS 242 B CD LYS 245 1 Y 1 B CE LYS 242 B CE LYS 245 1 Y 1 B NZ LYS 242 B NZ LYS 245 1 Y 1 B CG LYS 341 B CG LYS 344 1 Y 1 B CD LYS 341 B CD LYS 344 1 Y 1 B CE LYS 341 B CE LYS 344 1 Y 1 B NZ LYS 341 B NZ LYS 344 1 Y 1 B B OD1 O ASN HOH 281 507 1.92 1 B B O O ASP HOH 213 465 1.94 1 B B O O HOH HOH 530 535 1.95 1 A A NE2 O GLN HOH 66 432 2.06 1 B B O O HOH HOH 534 545 2.16 1 A A OE1 O GLN HOH 292 406 2.17 1 A A O O HOH HOH 378 391 2.17 1 B B OH O TYR HOH 291 537 2.19 1 -5.90 0.80 109.40 103.50 C C C O5' C5' C4' G G G 48 48 48 N 1 -6.95 0.70 101.30 94.35 C C C C3' C2' C1' G G G 48 48 48 N 1 -12.13 1.90 104.00 91.87 C C C O3' P O5' G C C 48 49 49 Y 1 9.21 1.20 110.70 119.91 C C C O5' P OP1 C C C 49 49 49 N 1 -6.37 1.00 104.00 97.63 C C C O4' C4' C3' C C C 49 49 49 N 1 -3.14 0.40 120.30 117.16 C C C C6 N1 C2 C C C 49 49 49 N 1 4.89 0.70 118.00 122.89 C C C N3 C4 N4 C C C 49 49 49 N 1 7.06 1.10 118.80 125.86 C C C C2 N1 C1' C C C 49 49 49 N 1 7.44 1.20 119.70 127.14 C C C C3' O3' P U U G 52 52 53 Y 1 5.44 0.70 108.50 113.94 C C C O4' C1' N9 G G G 53 53 53 N 1 7.08 1.10 110.50 117.58 C C C O3' P OP2 C G G 56 57 57 Y 1 -6.78 1.00 102.60 95.82 C C C C4' C3' C2' G G G 57 57 57 N 1 -7.39 0.70 101.30 93.91 C C C C3' C2' C1' G G G 57 57 57 N 1 4.37 0.70 119.90 124.27 C C C N3 C2 N2 G G G 57 57 57 N 1 4.34 0.70 108.50 112.84 C C C O4' C1' N9 A A A 58 58 58 N 1 -3.71 0.60 125.90 122.19 C C C C5 C4 O4 U U U 59 59 59 N 1 9.28 1.50 119.60 128.88 C C C OP1 P OP2 C C C 61 61 61 N 1 4.37 0.50 117.40 121.77 C C C C4 C5 C6 C C C 61 61 61 N 1 -3.80 0.50 121.00 117.20 C C C C5 C6 N1 C C C 61 61 61 N 1 -6.57 1.00 104.00 97.43 D D D O4' C4' C3' U U U 50 50 50 N 1 -4.93 0.60 125.90 120.97 D D D C5 C4 O4 U U U 50 50 50 N 1 5.58 0.70 119.40 124.98 D D D N3 C4 O4 U U U 52 52 52 N 1 -4.37 0.60 125.90 121.53 D D D C5 C4 O4 U U U 52 52 52 N 1 6.92 0.70 108.50 115.42 D D D O4' C1' N9 G G G 53 53 53 N 1 -3.56 0.40 110.80 107.24 D D D C4 C5 N7 G G G 53 53 53 N 1 3.31 0.50 104.30 107.61 D D D C5 N7 C8 G G G 53 53 53 N 1 3.82 0.40 105.40 109.22 D D D N9 C4 C5 G G G 53 53 53 N 1 10.72 1.20 119.70 130.42 D D D C3' O3' P 5MU 5MU U 54 54 55 Y 1 11.21 1.50 119.60 130.81 D D D OP1 P OP2 U U U 55 55 55 N 1 7.25 1.10 110.50 117.75 D D D O3' P OP2 U C C 55 56 56 Y 1 -6.04 0.90 105.70 99.66 D D D O5' P OP2 C C C 56 56 56 N 1 -5.18 0.60 125.10 119.92 D D D C6 N1 C2 G G G 57 57 57 N 1 4.48 0.50 111.50 115.98 D D D C5 C6 N1 G G G 57 57 57 N 1 -7.16 0.60 128.60 121.44 D D D C5 C6 O6 G G G 57 57 57 N 1 -5.00 0.80 109.40 104.40 D D D O5' C5' C4' A A A 58 58 58 N 1 3.74 0.60 118.60 122.34 D D D N1 C6 N6 A A A 58 58 58 N 1 C C C1' N1 C C 49 49 0.094 0.015 1.483 1.577 N 1 C C N3 C4 C C 61 61 -0.043 0.007 1.335 1.292 N 1 D D P O5' G G 53 53 0.081 0.010 1.593 1.674 N 1 D D P O5' U U 55 55 0.070 0.010 1.593 1.663 N 1 D D C4 C5 G G 57 57 -0.047 0.007 1.379 1.332 N 1 D D C5 N7 A A 58 58 -0.043 0.006 1.388 1.345 N 1 A A OH O TYR HOH 316 442 2.13 1_555 4_556 1 A B O O HOH HOH 398 457 2.18 1_555 3_545 1 A SER -1 -157.15 39.48 1 A PHE 77 -156.78 78.17 1 A ASN 116 81.64 18.29 1 A HIS 125 -97.79 53.39 1 A ASN 147 82.50 10.62 1 A ASP 164 -133.79 -48.70 1 A ALA 175 29.34 62.15 1 A MET 179 -162.04 119.83 1 A TYR 218 48.26 79.97 1 A ASN 223 -18.80 -75.99 1 A MET 274 -64.58 -97.31 1 A ARG 278 -175.98 113.72 1 A GLN 284 -37.67 -38.88 1 A ASN 325 -165.11 95.63 1 B SER -1 -160.72 115.22 1 B PHE 77 -150.98 73.88 1 B SER 81 -48.97 163.31 1 B ASN 98 -115.91 77.37 1 B ASN 116 81.59 23.31 1 B HIS 125 -98.27 54.59 1 B ALA 145 -38.58 -30.86 1 B ASN 147 80.11 9.07 1 B LYS 160 -150.32 87.33 1 B ASP 164 -137.78 -46.14 1 B ALA 175 20.12 66.77 1 B TYR 218 49.05 78.57 1 B ASN 223 -21.90 -73.96 1 B MET 274 -65.46 -99.09 1 B ARG 278 -173.71 112.47 1 B ASN 325 -164.24 100.29 1 B PHE 351 -116.53 66.03 47.563 -0.02 0.00 -0.01 0.00 0.00 0.01 0.945 0.907 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28635 0.22509 0.22970 2.43 35.07 3230 38764 7.7 93.62 11.218 0.247 RANDOM 1 THROUGHOUT SAD 0.461 0.310 0.80 0.80 1.20 PDB entry 2BH2 MAXIMUM LIKELIHOOD MASK 2.43 35.07 261 6979 0 804 5914 0.016 0.022 6929 0.002 0.020 4378 1.781 2.105 9568 1.434 3.001 10684 6.715 5.000 736 35.587 24.304 309 20.099 15.000 1055 15.169 15.000 46 0.085 0.200 1102 0.007 0.021 7116 0.003 0.020 1292 0.213 0.200 257 0.007 0.200 1 0.135 0.200 22 0.250 0.200 74 0.275 0.200 7 0.780 1.500 3692 0.143 1.500 1470 1.453 2.000 5963 2.102 3.000 3237 3.392 4.500 3605 2 A 2 531 X-RAY DIFFRACTION medium positional 0.00 0.50 2 A 2 531 X-RAY DIFFRACTION medium thermal 0.00 5.00 0.420 0.366 2.493 209 2533 20 82.81 2.43 35.1 3BT7 90859 42023 2 2 0.078 1 5.7 2.2 0.27 2.43 2.49 1.7 1 2.0 83.7 data reduction A.G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE package phasing K. Cowtan ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html DM program refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 data collection ADSC Quantum data scaling SCALA Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N A PRO 7 A PRO 10 HELX_P A GLU 9 A GLU 12 5 1 3 A GLN 10 A GLN 13 HELX_P A ALA 27 A ALA 30 1 2 18 A SER 81 A SER 84 HELX_P A ARG 96 A ARG 99 1 3 16 A ASN 98 A ASN 101 HELX_P A HIS 103 A HIS 106 1 4 6 A ASP 129 A ASP 132 HELX_P A ALA 145 A ALA 148 1 5 17 A ASN 192 A ASN 195 HELX_P A THR 207 A THR 210 1 6 16 A GLY 222 A GLY 225 HELX_P A ALA 229 A ALA 232 1 7 8 A ARG 230 A ARG 233 HELX_P A PHE 232 A PHE 235 5 8 3 A ALA 241 A ALA 244 HELX_P A ASN 255 A ASN 258 1 9 15 A ALA 267 A ALA 270 HELX_P A ASN 275 A ASN 278 1 10 9 A ARG 282 A ARG 285 HELX_P A ILE 286 A ILE 289 5 11 5 A ASP 287 A ASP 290 HELX_P A TYR 291 A TYR 294 5 12 5 A ASP 306 A ASP 309 HELX_P A GLN 314 A GLN 317 1 13 9 A ASN 325 A ASN 328 HELX_P A THR 339 A THR 342 1 14 15 B PRO 7 B PRO 10 HELX_P B GLU 9 B GLU 12 5 15 3 B GLN 10 B GLN 13 HELX_P B ALA 27 B ALA 30 1 16 18 B SER 81 B SER 84 HELX_P B ARG 96 B ARG 99 1 17 16 B ASN 98 B ASN 101 HELX_P B HIS 103 B HIS 106 1 18 6 B ASP 129 B ASP 132 HELX_P B ALA 145 B ALA 148 1 19 17 B ASN 192 B ASN 195 HELX_P B THR 207 B THR 210 1 20 16 B GLY 222 B GLY 225 HELX_P B ALA 229 B ALA 232 1 21 8 B ARG 230 B ARG 233 HELX_P B PHE 232 B PHE 235 5 22 3 B ALA 241 B ALA 244 HELX_P B ASN 255 B ASN 258 1 23 15 B ALA 267 B ALA 270 HELX_P B ASN 275 B ASN 278 1 24 9 B ARG 282 B ARG 285 HELX_P B ILE 286 B ILE 289 5 25 5 B ASP 287 B ASP 290 HELX_P B TYR 291 B TYR 294 5 26 5 B ASP 306 B ASP 309 HELX_P B ALA 315 B ALA 318 1 27 10 B ASN 325 B ASN 328 HELX_P B THR 339 B THR 342 1 28 15 covale 2.072 none A CYS 324 A SG CYS 327 1_555 C 5MU 54 C C6 5MU 7 1_555 covale 1.950 none B CYS 324 B SG CYS 327 1_555 D 5MU 54 D C6 5MU 7 1_555 covale 1.623 both C G 53 C O3' G 6 1_555 C 5MU 54 C P 5MU 7 1_555 covale 1.586 both C 5MU 54 C O3' 5MU 7 1_555 C U 55 C P U 8 1_555 covale 1.565 both D G 53 D O3' G 6 1_555 D 5MU 54 D P 5MU 7 1_555 covale 1.586 both D 5MU 54 D O3' 5MU 7 1_555 D U 55 D P U 8 1_555 hydrog WATSON-CRICK C G 48 C N1 G 1 1_555 C C 66 C N3 C 19 1_555 hydrog WATSON-CRICK C G 48 C N2 G 1 1_555 C C 66 C O2 C 19 1_555 hydrog WATSON-CRICK C G 48 C O6 G 1 1_555 C C 66 C N4 C 19 1_555 hydrog WATSON-CRICK C C 49 C N3 C 2 1_555 C G 65 C N1 G 18 1_555 hydrog WATSON-CRICK C C 49 C N4 C 2 1_555 C G 65 C O6 G 18 1_555 hydrog WATSON-CRICK C C 49 C O2 C 2 1_555 C G 65 C N2 G 18 1_555 hydrog WATSON-CRICK C U 50 C N3 U 3 1_555 C A 64 C N1 A 17 1_555 hydrog WATSON-CRICK C U 50 C O4 U 3 1_555 C A 64 C N6 A 17 1_555 hydrog WATSON-CRICK C G 51 C N1 G 4 1_555 C C 63 C N3 C 16 1_555 hydrog WATSON-CRICK C G 51 C N2 G 4 1_555 C C 63 C O2 C 16 1_555 hydrog WATSON-CRICK C G 51 C O6 G 4 1_555 C C 63 C N4 C 16 1_555 hydrog WATSON-CRICK C U 52 C N3 U 5 1_555 C A 62 C N1 A 15 1_555 hydrog WATSON-CRICK C U 52 C O4 U 5 1_555 C A 62 C N6 A 15 1_555 hydrog G-C PAIR C G 53 C O6 G 6 1_555 C C 61 C N4 C 14 1_555 hydrog WATSON-CRICK D G 48 D N1 G 1 1_555 D C 66 D N3 C 19 1_555 hydrog WATSON-CRICK D G 48 D N2 G 1 1_555 D C 66 D O2 C 19 1_555 hydrog WATSON-CRICK D G 48 D O6 G 1 1_555 D C 66 D N4 C 19 1_555 hydrog WATSON-CRICK D C 49 D N3 C 2 1_555 D G 65 D N1 G 18 1_555 hydrog WATSON-CRICK D C 49 D N4 C 2 1_555 D G 65 D O6 G 18 1_555 hydrog WATSON-CRICK D C 49 D O2 C 2 1_555 D G 65 D N2 G 18 1_555 hydrog WATSON-CRICK D U 50 D N3 U 3 1_555 D A 64 D N1 A 17 1_555 hydrog WATSON-CRICK D U 50 D O4 U 3 1_555 D A 64 D N6 A 17 1_555 hydrog WATSON-CRICK D G 51 D N1 G 4 1_555 D C 63 D N3 C 16 1_555 hydrog WATSON-CRICK D G 51 D N2 G 4 1_555 D C 63 D O2 C 16 1_555 hydrog WATSON-CRICK D G 51 D O6 G 4 1_555 D C 63 D N4 C 16 1_555 hydrog WATSON-CRICK D U 52 D N3 U 5 1_555 D A 62 D N1 A 15 1_555 hydrog WATSON-CRICK D U 52 D O4 U 5 1_555 D A 62 D N6 A 15 1_555 hydrog WATSON-CRICK D G 53 D N1 G 6 1_555 D C 61 D N3 C 14 1_555 hydrog WATSON-CRICK D G 53 D N2 G 6 1_555 D C 61 D O2 C 14 1_555 hydrog WATSON-CRICK D G 53 D O6 G 6 1_555 D C 61 D N4 C 14 1_555 TRANSFERASE/RNA methyluridine, methyltransferase, TrmA, RUMT, S-adenosyl-L-methionine, tRNA processing, TRANSFERASE-RNA COMPLEX A B A B A B A B A B A B A B C D A MET 1 A MET 4 A ASP 65 A ASP 68 1 B MET 1 B MET 4 B ASP 65 B ASP 68 1 A GLN 67 A GLN 70 A THR 68 A THR 71 1 B GLN 67 B GLN 70 B THR 68 B THR 71 1 A SER 70 A SER 73 A SER 70 A SER 73 1 B SER 70 B SER 73 B SER 70 B SER 73 1 A ILE 72 A ILE 75 A SER 81 A SER 84 1 B ILE 72 B ILE 75 B SER 81 B SER 84 1 A LEU 83 A LEU 86 A LEU 101 A LEU 104 1 B LEU 83 B LEU 86 B LEU 101 B LEU 104 1 A HIS 103 A HIS 106 A ASP 233 A ASP 236 1 B HIS 103 B HIS 106 B ASP 233 B ASP 236 1 A VAL 235 A VAL 238 A LYS 366 A LYS 369 1 B VAL 235 B VAL 238 B LYS 366 B LYS 369 1 C G 48 C G 1 C C 66 C C 19 4 D G 48 D G 1 D C 66 D C 19 4 TRMA_ECOLI UNP 1 1 P23003 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAA SELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRIL YISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 3BT7 PDB 2 1 3BT7 GCUGUGUUCGAUCCACAGC 1 366 3BT7 1 366 P23003 A 1 4 369 1 366 3BT7 1 366 P23003 B 1 4 369 48 66 3BT7 48 66 3BT7 C 2 1 19 48 66 3BT7 48 66 3BT7 D 2 1 19 1 expression tag GLY -2 3BT7 A P23003 UNP 1 1 expression tag SER -1 3BT7 A P23003 UNP 2 1 expression tag HIS 0 3BT7 A P23003 UNP 3 1 GLU engineered mutation GLN 358 3BT7 A P23003 UNP 358 361 2 expression tag GLY -2 3BT7 B P23003 UNP 1 2 expression tag SER -1 3BT7 B P23003 UNP 2 2 expression tag HIS 0 3BT7 B P23003 UNP 3 2 GLU engineered mutation GLN 358 3BT7 B P23003 UNP 358 361 8 7 2 8 7 2 parallel anti-parallel anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLU 35 A GLU 38 A PHE 37 A PHE 40 A HIS 340 A HIS 343 A PHE 348 A PHE 351 A GLN 358 A GLN 361 A ALA 365 A ALA 368 A ARG 318 A ARG 321 A SER 323 A SER 326 A CYS 293 A CYS 296 A VAL 298 A VAL 301 A ASP 213 A ASP 216 A LEU 217 A LEU 220 A ARG 234 A ARG 237 A THR 238 A THR 241 A VAL 260 A VAL 263 A ILE 263 A ILE 266 A ARG 71 A ARG 74 A ARG 73 A ARG 76 A ASP 58 A ASP 61 A PHE 64 A PHE 67 A ARG 47 A ARG 50 A ASP 55 A ASP 58 A LEU 105 A LEU 108 A THR 112 A THR 115 A GLN 117 A GLN 120 A TYR 124 A TYR 127 A ASN 149 A ASN 152 A ALA 156 A ALA 159 A THR 159 A THR 162 A GLU 162 A GLU 165 A TYR 167 A TYR 170 A ARG 171 A ARG 174 A ILE 180 A ILE 183 A VAL 184 A VAL 187 B GLU 35 B GLU 38 B PHE 37 B PHE 40 B HIS 340 B HIS 343 B PHE 348 B PHE 351 B GLN 358 B GLN 361 B ALA 365 B ALA 368 B ARG 318 B ARG 321 B SER 323 B SER 326 B CYS 293 B CYS 296 B VAL 298 B VAL 301 B ASP 213 B ASP 216 B LEU 217 B LEU 220 B ARG 234 B ARG 237 B THR 238 B THR 241 B VAL 260 B VAL 263 B ILE 263 B ILE 266 B ARG 71 B ARG 74 B ARG 73 B ARG 76 B ASP 58 B ASP 61 B PHE 64 B PHE 67 B ARG 47 B ARG 50 B ASP 55 B ASP 58 B LEU 105 B LEU 108 B THR 112 B THR 115 B GLN 117 B GLN 120 B TYR 124 B TYR 127 B ASN 149 B ASN 152 B ALA 156 B ALA 159 B THR 159 B THR 162 B GLU 162 B GLU 165 B TYR 167 B TYR 170 B ARG 171 B ARG 174 B ILE 180 B ILE 183 B VAL 184 B VAL 187 5 C 1 2 1