0.005423
0.000000
0.003243
0.000000
0.014259
0.000000
0.000000
0.000000
0.010794
0.00000
0.00000
0.00000
Alian, A.
Stroud, R.M.
Finer-Moore, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
120.88
90.00
184.407
70.131
107.950
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
O
N
10
R
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
R
C
N
15
N
O
N
16
N
O
N
17
N
C
N
18
N
O
N
19
N
P
N
20
N
O
N
21
N
O
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
Y
51
N
N
Y
52
N
C
Y
53
N
N
Y
54
N
C
Y
55
N
C
N
56
N
N
Y
57
N
N
Y
58
N
C
Y
59
N
N
Y
60
N
C
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
N
N
96
N
C
N
97
N
N
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
P
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
O
N
156
S
C
N
157
N
O
N
158
R
C
N
159
N
O
N
160
R
C
N
161
N
N
N
162
N
C
N
163
N
O
N
164
N
N
N
165
N
C
N
166
N
N
N
167
N
C
N
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
R
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
S
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
P
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
N
207
R
C
N
208
N
O
N
209
R
C
Y
210
N
N
Y
211
N
C
Y
212
N
N
Y
213
N
C
N
214
N
C
N
215
N
O
N
216
N
N
N
217
N
C
N
218
N
N
N
219
N
N
Y
220
N
C
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
N
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
S
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
N
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
S
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
N
442
N
O
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
R
C
N
456
N
O
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
N
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
N
506
N
O
N
507
N
O
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
O
N
520
N
P
N
521
N
O
N
522
N
O
N
523
N
O
N
524
N
C
N
525
R
C
N
526
N
O
N
527
S
C
N
528
N
O
N
529
R
C
N
530
N
O
N
531
R
C
N
532
N
N
N
533
N
C
N
534
N
O
N
535
N
N
N
536
N
C
N
537
N
O
N
538
N
C
N
539
N
C
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
N
N
554
S
C
N
555
N
C
N
556
N
O
N
557
N
C
N
558
N
C
N
559
N
C
N
560
N
O
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
doub
N
72
N
sing
N
73
N
sing
Y
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
sing
Y
294
N
doub
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
doub
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
doub
Y
475
N
sing
Y
476
N
sing
N
477
N
sing
Y
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
doub
N
482
N
sing
Y
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
Y
498
N
doub
Y
499
N
sing
Y
500
N
sing
N
501
N
sing
Y
502
N
doub
N
503
N
sing
Y
504
N
doub
N
505
N
sing
Y
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
doub
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
doub
N
542
N
sing
N
543
N
doub
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
doub
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
105
6876
6881
10.1073/pnas.0802247105
18451029
Structure of a TrmA-RNA complex: A consensus RNA fold contributes to substrate selectivity and catalysis in m5U methyltransferases.
2008
10.2210/pdb3bt7/pdb
pdb_00003bt7
100
1
CCD
2007-01-24
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
1.11
1.0
8.3.1
ALS
1.11
SYNCHROTRON
ALS BEAMLINE 8.3.1
42298.137
tRNA (uracil-5-)-methyltransferase
2.1.1.35
E358Q
2
man
polymer
6044.636
RNA (5'-D(P*GP*CP*UP*GP*UP*GP*(5MU)P*UP*CP*GP*AP*UP*CP*CP*AP*CP*AP*GP*C)-3')
2
syn
polymer
18.015
water
261
nat
water
tRNAM-5-U54, methyltransferase, RUMT
no
no
GSHMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSF
PAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT
KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA
TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP
RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTAK
GSHMTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSF
PAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT
KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA
TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP
RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTAK
A,B
polypeptide(L)
no
yes
GCUGUG(5MU)UCGAUCCACAGC
GCUGUGUUCGAUCCACAGC
C,D
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
Escherichia coli
sample
trmA
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
Plasmid
pET28b
1
3.10
60.30
VAPOR DIFFUSION, HANGING DROP
7.4
100 mM sodium cacodylate pH 7.4, 200 mM sodium sulfate, and 22 % PEG-8000, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
sodium cacodylate
1
sodium cacodylate
2
sodium sulfate
1
sodium sulfate
2
PEG-8000
1
PEG-8000
2
6.100
C
61
C
53
76.346
C_C61:G53_C
1
2.496
-0.257
-0.347
-5.180
1.671
1
20
C
62
C
52
2.112
C_A62:U52_C
2
-13.312
-0.150
0.698
-0.247
-8.697
1
19
C
63
C
51
2.065
C_C63:G51_C
3
-12.113
-0.379
0.861
-0.155
0.845
1
20
C
64
C
50
1.468
C_A64:U50_C
4
-16.619
-0.554
0.084
-0.249
5.496
1
19
C
65
C
49
-0.948
C_G65:C49_C
5
-16.057
-0.796
0.350
-0.420
10.026
1
19
C
66
C
48
0.709
C_C66:G48_C
6
-15.799
-0.149
-0.115
-0.412
-3.273
1
19
D
48
D
66
9.359
D_G48:C66_D
7
-14.173
0.258
0.303
-0.089
1.928
1
19
D
49
D
65
-6.495
D_C49:G65_D
8
-10.459
-0.018
0.080
-0.451
1.703
1
20
D
50
D
64
7.662
D_U50:A64_D
9
-13.347
0.273
0.118
0.027
-2.038
1
19
D
51
D
63
-0.930
D_G51:C63_D
10
-14.326
-0.068
0.110
-0.203
0.265
1
20
D
52
D
62
6.001
D_U52:A62_D
11
-16.688
0.045
0.219
0.020
3.644
1
19
D
53
D
61
-2.545
D_G53:C61_D
12
-6.906
0.072
0.014
-0.009
-0.683
168.921
C
C
61
62
-47.114
C
C
53
52
-2.730
-92.182
0.759
-3.497
CC_C61A62:U52G53_CC
1
132.189
-67.562
107.731
-2.073
-0.835
3.261
30.380
C
C
62
63
5.554
C
C
52
51
3.431
2.901
-0.293
-1.794
CC_A62C63:G51U52_CC
2
-3.095
5.925
30.089
-4.021
-0.080
2.796
31.007
C
C
63
64
1.846
C
C
51
50
2.886
0.986
-0.504
-1.595
CC_C63A64:U50G51_CC
3
2.082
-3.898
30.923
-3.148
1.291
2.809
31.297
C
C
64
65
9.316
C
C
50
49
3.049
4.986
0.038
-1.052
CC_A64G65:C49U50_CC
4
-4.736
8.848
30.551
-2.805
-0.881
2.962
34.399
C
C
65
66
7.676
C
C
49
48
3.151
4.515
0.581
-1.658
CC_G65C66:G48C49_CC
5
4.532
-7.705
33.816
-3.467
-0.316
-2.783
7.426
C
D
66
48
77.930
C
D
48
66
3.668
7.032
0.374
-3.410
CD_C66G48:C66G48_DC
6
-2.109
23.368
1.117
-31.954
-4.578
3.123
25.278
D
D
48
49
4.031
D
D
66
65
3.170
1.760
-1.082
-1.748
DD_G48C49:G65C66_DD
7
-2.200
5.038
25.123
-4.488
1.855
2.933
35.965
D
D
49
50
10.227
D
D
65
64
3.187
6.278
0.862
-1.554
DD_C49U50:A64G65_DD
8
2.735
-4.455
35.328
-3.361
-1.027
2.201
27.952
D
D
50
51
23.343
D
D
64
63
3.178
10.982
-0.268
-1.907
DD_U50G51:C63A64_DD
9
-0.718
1.527
25.734
-6.185
0.409
3.120
32.536
D
D
51
52
3.195
D
D
63
62
3.216
1.789
0.308
-1.534
DD_G51U52:A62C63_DD
10
-0.856
1.528
32.477
-3.041
-0.695
2.428
30.013
D
D
52
53
19.988
D
D
62
61
3.171
10.151
-0.356
-1.639
DD_U52G53:C61A62_DD
11
1.449
-2.853
28.245
-5.009
0.950
database_2
pdbx_entity_src_syn
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
struct_ncs_dom_lim
repository
Initial release
Version format compliance
Derived calculations
Database references
Derived calculations
Source and taxonomy
Data collection
Refinement description
1
0
2008-04-29
1
1
2011-07-13
1
2
2013-09-25
1
3
2021-10-20
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
5-Methyluridine Methyltransferase RumA in complex with RNA and SAM
5-Methyluridine Methyltransferase RumA
RCSB
Y
RCSB
2007-12-27
REL
REL
HOH
water
32630
synthetic construct
sample
2BH2
PDB entry 2BH2
PDB
experimental model
HOH
56
3
HOH
HOH
367
A
HOH
57
3
HOH
HOH
368
A
HOH
58
3
HOH
HOH
369
A
HOH
59
3
HOH
HOH
370
A
HOH
60
3
HOH
HOH
371
A
HOH
61
3
HOH
HOH
372
A
HOH
62
3
HOH
HOH
373
A
HOH
63
3
HOH
HOH
374
A
HOH
64
3
HOH
HOH
375
A
HOH
65
3
HOH
HOH
376
A
HOH
66
3
HOH
HOH
377
A
HOH
67
3
HOH
HOH
378
A
HOH
68
3
HOH
HOH
379
A
HOH
69
3
HOH
HOH
380
A
HOH
70
3
HOH
HOH
381
A
HOH
71
3
HOH
HOH
382
A
HOH
72
3
HOH
HOH
383
A
HOH
73
3
HOH
HOH
384
A
HOH
74
3
HOH
HOH
385
A
HOH
75
3
HOH
HOH
386
A
HOH
76
3
HOH
HOH
387
A
HOH
77
3
HOH
HOH
388
A
HOH
79
3
HOH
HOH
389
A
HOH
106
3
HOH
HOH
390
A
HOH
107
3
HOH
HOH
391
A
HOH
108
3
HOH
HOH
392
A
HOH
119
3
HOH
HOH
393
A
HOH
126
3
HOH
HOH
394
A
HOH
147
3
HOH
HOH
395
A
HOH
178
3
HOH
HOH
396
A
HOH
179
3
HOH
HOH
397
A
HOH
180
3
HOH
HOH
398
A
HOH
182
3
HOH
HOH
399
A
HOH
185
3
HOH
HOH
400
A
HOH
186
3
HOH
HOH
401
A
HOH
187
3
HOH
HOH
402
A
HOH
188
3
HOH
HOH
403
A
HOH
190
3
HOH
HOH
404
A
HOH
191
3
HOH
HOH
405
A
HOH
192
3
HOH
HOH
406
A
HOH
193
3
HOH
HOH
407
A
HOH
194
3
HOH
HOH
408
A
HOH
196
3
HOH
HOH
410
A
HOH
199
3
HOH
HOH
411
A
HOH
200
3
HOH
HOH
412
A
HOH
201
3
HOH
HOH
413
A
HOH
202
3
HOH
HOH
414
A
HOH
203
3
HOH
HOH
415
A
HOH
204
3
HOH
HOH
416
A
HOH
205
3
HOH
HOH
417
A
HOH
206
3
HOH
HOH
418
A
HOH
208
3
HOH
HOH
419
A
HOH
209
3
HOH
HOH
420
A
HOH
210
3
HOH
HOH
421
A
HOH
211
3
HOH
HOH
422
A
HOH
212
3
HOH
HOH
423
A
HOH
213
3
HOH
HOH
424
A
HOH
214
3
HOH
HOH
425
A
HOH
216
3
HOH
HOH
426
A
HOH
217
3
HOH
HOH
427
A
HOH
237
3
HOH
HOH
428
A
HOH
238
3
HOH
HOH
429
A
HOH
239
3
HOH
HOH
430
A
HOH
243
3
HOH
HOH
431
A
HOH
244
3
HOH
HOH
432
A
HOH
246
3
HOH
HOH
433
A
HOH
247
3
HOH
HOH
434
A
HOH
248
3
HOH
HOH
435
A
HOH
252
3
HOH
HOH
436
A
HOH
255
3
HOH
HOH
437
A
HOH
266
3
HOH
HOH
438
A
HOH
267
3
HOH
HOH
439
A
HOH
269
3
HOH
HOH
440
A
HOH
273
3
HOH
HOH
441
A
HOH
280
3
HOH
HOH
442
A
HOH
288
3
HOH
HOH
443
A
HOH
289
3
HOH
HOH
444
A
HOH
291
3
HOH
HOH
445
A
HOH
292
3
HOH
HOH
446
A
HOH
294
3
HOH
HOH
447
A
HOH
195
3
HOH
HOH
409
B
HOH
1
3
HOH
HOH
410
B
HOH
2
3
HOH
HOH
411
B
HOH
4
3
HOH
HOH
412
B
HOH
5
3
HOH
HOH
413
B
HOH
6
3
HOH
HOH
414
B
HOH
7
3
HOH
HOH
415
B
HOH
11
3
HOH
HOH
416
B
HOH
12
3
HOH
HOH
417
B
HOH
15
3
HOH
HOH
418
B
HOH
16
3
HOH
HOH
419
B
HOH
17
3
HOH
HOH
420
B
HOH
18
3
HOH
HOH
421
B
HOH
19
3
HOH
HOH
422
B
HOH
20
3
HOH
HOH
423
B
HOH
21
3
HOH
HOH
424
B
HOH
22
3
HOH
HOH
425
B
HOH
23
3
HOH
HOH
426
B
HOH
24
3
HOH
HOH
427
B
HOH
25
3
HOH
HOH
428
B
HOH
26
3
HOH
HOH
429
B
HOH
28
3
HOH
HOH
430
B
HOH
29
3
HOH
HOH
431
B
HOH
30
3
HOH
HOH
432
B
HOH
32
3
HOH
HOH
433
B
HOH
33
3
HOH
HOH
434
B
HOH
36
3
HOH
HOH
435
B
HOH
37
3
HOH
HOH
436
B
HOH
39
3
HOH
HOH
437
B
HOH
45
3
HOH
HOH
438
B
HOH
46
3
HOH
HOH
439
B
HOH
47
3
HOH
HOH
440
B
HOH
48
3
HOH
HOH
441
B
HOH
49
3
HOH
HOH
442
B
HOH
50
3
HOH
HOH
443
B
HOH
51
3
HOH
HOH
444
B
HOH
52
3
HOH
HOH
445
B
HOH
53
3
HOH
HOH
446
B
HOH
55
3
HOH
HOH
447
B
HOH
78
3
HOH
HOH
448
B
HOH
80
3
HOH
HOH
449
B
HOH
81
3
HOH
HOH
450
B
HOH
82
3
HOH
HOH
451
B
HOH
83
3
HOH
HOH
452
B
HOH
85
3
HOH
HOH
453
B
HOH
86
3
HOH
HOH
454
B
HOH
87
3
HOH
HOH
455
B
HOH
88
3
HOH
HOH
456
B
HOH
89
3
HOH
HOH
457
B
HOH
90
3
HOH
HOH
458
B
HOH
93
3
HOH
HOH
459
B
HOH
94
3
HOH
HOH
460
B
HOH
95
3
HOH
HOH
461
B
HOH
96
3
HOH
HOH
462
B
HOH
97
3
HOH
HOH
463
B
HOH
98
3
HOH
HOH
464
B
HOH
99
3
HOH
HOH
465
B
HOH
100
3
HOH
HOH
466
B
HOH
101
3
HOH
HOH
467
B
HOH
102
3
HOH
HOH
468
B
HOH
103
3
HOH
HOH
469
B
HOH
104
3
HOH
HOH
470
B
HOH
105
3
HOH
HOH
471
B
HOH
109
3
HOH
HOH
472
B
HOH
112
3
HOH
HOH
473
B
HOH
113
3
HOH
HOH
474
B
HOH
114
3
HOH
HOH
475
B
HOH
115
3
HOH
HOH
476
B
HOH
116
3
HOH
HOH
477
B
HOH
117
3
HOH
HOH
478
B
HOH
120
3
HOH
HOH
479
B
HOH
121
3
HOH
HOH
480
B
HOH
122
3
HOH
HOH
481
B
HOH
127
3
HOH
HOH
482
B
HOH
128
3
HOH
HOH
483
B
HOH
129
3
HOH
HOH
484
B
HOH
130
3
HOH
HOH
485
B
HOH
131
3
HOH
HOH
486
B
HOH
132
3
HOH
HOH
487
B
HOH
135
3
HOH
HOH
488
B
HOH
136
3
HOH
HOH
489
B
HOH
137
3
HOH
HOH
490
B
HOH
138
3
HOH
HOH
491
B
HOH
142
3
HOH
HOH
492
B
HOH
149
3
HOH
HOH
493
B
HOH
152
3
HOH
HOH
494
B
HOH
153
3
HOH
HOH
495
B
HOH
154
3
HOH
HOH
496
B
HOH
155
3
HOH
HOH
497
B
HOH
156
3
HOH
HOH
498
B
HOH
157
3
HOH
HOH
499
B
HOH
158
3
HOH
HOH
500
B
HOH
159
3
HOH
HOH
501
B
HOH
161
3
HOH
HOH
502
B
HOH
162
3
HOH
HOH
503
B
HOH
163
3
HOH
HOH
504
B
HOH
165
3
HOH
HOH
505
B
HOH
166
3
HOH
HOH
506
B
HOH
167
3
HOH
HOH
507
B
HOH
168
3
HOH
HOH
508
B
HOH
169
3
HOH
HOH
509
B
HOH
170
3
HOH
HOH
510
B
HOH
172
3
HOH
HOH
511
B
HOH
173
3
HOH
HOH
512
B
HOH
174
3
HOH
HOH
513
B
HOH
175
3
HOH
HOH
514
B
HOH
176
3
HOH
HOH
515
B
HOH
181
3
HOH
HOH
516
B
HOH
189
3
HOH
HOH
517
B
HOH
219
3
HOH
HOH
518
B
HOH
220
3
HOH
HOH
519
B
HOH
221
3
HOH
HOH
520
B
HOH
222
3
HOH
HOH
521
B
HOH
223
3
HOH
HOH
522
B
HOH
225
3
HOH
HOH
523
B
HOH
226
3
HOH
HOH
524
B
HOH
232
3
HOH
HOH
525
B
HOH
233
3
HOH
HOH
526
B
HOH
235
3
HOH
HOH
527
B
HOH
236
3
HOH
HOH
528
B
HOH
245
3
HOH
HOH
529
B
HOH
253
3
HOH
HOH
530
B
HOH
254
3
HOH
HOH
531
B
HOH
256
3
HOH
HOH
532
B
HOH
257
3
HOH
HOH
533
B
HOH
263
3
HOH
HOH
534
B
HOH
264
3
HOH
HOH
535
B
HOH
265
3
HOH
HOH
536
B
HOH
268
3
HOH
HOH
537
B
HOH
270
3
HOH
HOH
538
B
HOH
271
3
HOH
HOH
539
B
HOH
274
3
HOH
HOH
540
B
HOH
282
3
HOH
HOH
541
B
HOH
283
3
HOH
HOH
542
B
HOH
286
3
HOH
HOH
543
B
HOH
287
3
HOH
HOH
544
B
HOH
293
3
HOH
HOH
545
B
HOH
125
3
HOH
HOH
125
C
HOH
145
3
HOH
HOH
145
C
HOH
148
3
HOH
HOH
148
C
HOH
183
3
HOH
HOH
183
C
HOH
184
3
HOH
HOH
184
C
HOH
207
3
HOH
HOH
207
C
HOH
218
3
HOH
HOH
218
C
HOH
234
3
HOH
HOH
234
C
HOH
240
3
HOH
HOH
240
C
HOH
242
3
HOH
HOH
242
C
HOH
249
3
HOH
HOH
249
C
HOH
250
3
HOH
HOH
250
C
HOH
8
3
HOH
HOH
67
D
HOH
9
3
HOH
HOH
68
D
HOH
10
3
HOH
HOH
69
D
HOH
13
3
HOH
HOH
70
D
HOH
14
3
HOH
HOH
71
D
HOH
34
3
HOH
HOH
72
D
HOH
35
3
HOH
HOH
73
D
HOH
38
3
HOH
HOH
74
D
HOH
40
3
HOH
HOH
75
D
HOH
41
3
HOH
HOH
76
D
HOH
42
3
HOH
HOH
77
D
HOH
43
3
HOH
HOH
78
D
HOH
44
3
HOH
HOH
79
D
HOH
54
3
HOH
HOH
80
D
HOH
84
3
HOH
HOH
81
D
HOH
91
3
HOH
HOH
82
D
HOH
92
3
HOH
HOH
83
D
HOH
110
3
HOH
HOH
84
D
HOH
118
3
HOH
HOH
85
D
HOH
123
3
HOH
HOH
86
D
HOH
124
3
HOH
HOH
87
D
HOH
139
3
HOH
HOH
88
D
HOH
140
3
HOH
HOH
89
D
HOH
141
3
HOH
HOH
90
D
HOH
150
3
HOH
HOH
91
D
HOH
151
3
HOH
HOH
92
D
HOH
160
3
HOH
HOH
93
D
HOH
164
3
HOH
HOH
94
D
HOH
227
3
HOH
HOH
95
D
HOH
230
3
HOH
HOH
96
D
HOH
231
3
HOH
HOH
97
D
HOH
285
3
HOH
HOH
98
D
GLY
-2
n
1
GLY
-2
A
SER
-1
n
2
SER
-1
A
HIS
0
n
3
HIS
0
A
MET
1
n
4
MET
1
A
THR
2
n
5
THR
2
A
PRO
3
n
6
PRO
3
A
GLU
4
n
7
GLU
4
A
HIS
5
n
8
HIS
5
A
LEU
6
n
9
LEU
6
A
PRO
7
n
10
PRO
7
A
THR
8
n
11
THR
8
A
GLU
9
n
12
GLU
9
A
GLN
10
n
13
GLN
10
A
TYR
11
n
14
TYR
11
A
GLU
12
n
15
GLU
12
A
ALA
13
n
16
ALA
13
A
GLN
14
n
17
GLN
14
A
LEU
15
n
18
LEU
15
A
ALA
16
n
19
ALA
16
A
GLU
17
n
20
GLU
17
A
LYS
18
n
21
LYS
18
A
VAL
19
n
22
VAL
19
A
VAL
20
n
23
VAL
20
A
ARG
21
n
24
ARG
21
A
LEU
22
n
25
LEU
22
A
GLN
23
n
26
GLN
23
A
SER
24
n
27
SER
24
A
MET
25
n
28
MET
25
A
MET
26
n
29
MET
26
A
ALA
27
n
30
ALA
27
A
PRO
28
n
31
PRO
28
A
PHE
29
n
32
PHE
29
A
SER
30
n
33
SER
30
A
ASP
31
n
34
ASP
31
A
LEU
32
n
35
LEU
32
A
VAL
33
n
36
VAL
33
A
PRO
34
n
37
PRO
34
A
GLU
35
n
38
GLU
35
A
VAL
36
n
39
VAL
36
A
PHE
37
n
40
PHE
37
A
ARG
38
n
41
ARG
38
A
SER
39
n
42
SER
39
A
PRO
40
n
43
PRO
40
A
VAL
41
n
44
VAL
41
A
SER
42
n
45
SER
42
A
HIS
43
n
46
HIS
43
A
TYR
44
n
47
TYR
44
A
ARG
45
n
48
ARG
45
A
MET
46
n
49
MET
46
A
ARG
47
n
50
ARG
47
A
ALA
48
n
51
ALA
48
A
GLU
49
n
52
GLU
49
A
PHE
50
n
53
PHE
50
A
ARG
51
n
54
ARG
51
A
ILE
52
n
55
ILE
52
A
TRP
53
n
56
TRP
53
A
HIS
54
n
57
HIS
54
A
ASP
55
n
58
ASP
55
A
GLY
56
n
59
GLY
56
A
ASP
57
n
60
ASP
57
A
ASP
58
n
61
ASP
58
A
LEU
59
n
62
LEU
59
A
TYR
60
n
63
TYR
60
A
HIS
61
n
64
HIS
61
A
ILE
62
n
65
ILE
62
A
ILE
63
n
66
ILE
63
A
PHE
64
n
67
PHE
64
A
ASP
65
n
68
ASP
65
A
GLN
66
n
69
GLN
66
A
GLN
67
n
70
GLN
67
A
THR
68
n
71
THR
68
A
LYS
69
n
72
LYS
69
A
SER
70
n
73
SER
70
A
ARG
71
n
74
ARG
71
A
ILE
72
n
75
ILE
72
A
ARG
73
n
76
ARG
73
A
VAL
74
n
77
VAL
74
A
ASP
75
n
78
ASP
75
A
SER
76
n
79
SER
76
A
PHE
77
n
80
PHE
77
A
PRO
78
n
81
PRO
78
A
ALA
79
n
82
ALA
79
A
ALA
80
n
83
ALA
80
A
SER
81
n
84
SER
81
A
GLU
82
n
85
GLU
82
A
LEU
83
n
86
LEU
83
A
ILE
84
n
87
ILE
84
A
ASN
85
n
88
ASN
85
A
GLN
86
n
89
GLN
86
A
LEU
87
n
90
LEU
87
A
MET
88
n
91
MET
88
A
THR
89
n
92
THR
89
A
ALA
90
n
93
ALA
90
A
MET
91
n
94
MET
91
A
ILE
92
n
95
ILE
92
A
ALA
93
n
96
ALA
93
A
GLY
94
n
97
GLY
94
A
VAL
95
n
98
VAL
95
A
ARG
96
n
99
ARG
96
A
ASN
97
n
100
ASN
97
A
ASN
98
n
101
ASN
98
A
PRO
99
n
102
PRO
99
A
VAL
100
n
103
VAL
100
A
LEU
101
n
104
LEU
101
A
ARG
102
n
105
ARG
102
A
HIS
103
n
106
HIS
103
A
LYS
104
n
107
LYS
104
A
LEU
105
n
108
LEU
105
A
PHE
106
n
109
PHE
106
A
GLN
107
n
110
GLN
107
A
ILE
108
n
111
ILE
108
A
ASP
109
n
112
ASP
109
A
TYR
110
n
113
TYR
110
A
LEU
111
n
114
LEU
111
A
THR
112
n
115
THR
112
A
THR
113
n
116
THR
113
A
LEU
114
n
117
LEU
114
A
SER
115
n
118
SER
115
A
ASN
116
n
119
ASN
116
A
GLN
117
n
120
GLN
117
A
ALA
118
n
121
ALA
118
A
VAL
119
n
122
VAL
119
A
VAL
120
n
123
VAL
120
A
SER
121
n
124
SER
121
A
LEU
122
n
125
LEU
122
A
LEU
123
n
126
LEU
123
A
TYR
124
n
127
TYR
124
A
HIS
125
n
128
HIS
125
A
LYS
126
n
129
LYS
126
A
LYS
127
n
130
LYS
127
A
LEU
128
n
131
LEU
128
A
ASP
129
n
132
ASP
129
A
ASP
130
n
133
ASP
130
A
GLU
131
n
134
GLU
131
A
TRP
132
n
135
TRP
132
A
ARG
133
n
136
ARG
133
A
GLN
134
n
137
GLN
134
A
GLU
135
n
138
GLU
135
A
ALA
136
n
139
ALA
136
A
GLU
137
n
140
GLU
137
A
ALA
138
n
141
ALA
138
A
LEU
139
n
142
LEU
139
A
ARG
140
n
143
ARG
140
A
ASP
141
n
144
ASP
141
A
ALA
142
n
145
ALA
142
A
LEU
143
n
146
LEU
143
A
ARG
144
n
147
ARG
144
A
ALA
145
n
148
ALA
145
A
GLN
146
n
149
GLN
146
A
ASN
147
n
150
ASN
147
A
LEU
148
n
151
LEU
148
A
ASN
149
n
152
ASN
149
A
VAL
150
n
153
VAL
150
A
HIS
151
n
154
HIS
151
A
LEU
152
n
155
LEU
152
A
ILE
153
n
156
ILE
153
A
GLY
154
n
157
GLY
154
A
ARG
155
n
158
ARG
155
A
ALA
156
n
159
ALA
156
A
THR
157
n
160
THR
157
A
LYS
158
n
161
LYS
158
A
THR
159
n
162
THR
159
A
LYS
160
n
163
LYS
160
A
ILE
161
n
164
ILE
161
A
GLU
162
n
165
GLU
162
A
LEU
163
n
166
LEU
163
A
ASP
164
n
167
ASP
164
A
GLN
165
n
168
GLN
165
A
ASP
166
n
169
ASP
166
A
TYR
167
n
170
TYR
167
A
ILE
168
n
171
ILE
168
A
ASP
169
n
172
ASP
169
A
GLU
170
n
173
GLU
170
A
ARG
171
n
174
ARG
171
A
LEU
172
n
175
LEU
172
A
PRO
173
n
176
PRO
173
A
VAL
174
n
177
VAL
174
A
ALA
175
n
178
ALA
175
A
GLY
176
n
179
GLY
176
A
LYS
177
n
180
LYS
177
A
GLU
178
n
181
GLU
178
A
MET
179
n
182
MET
179
A
ILE
180
n
183
ILE
180
A
TYR
181
n
184
TYR
181
A
ARG
182
n
185
ARG
182
A
GLN
183
n
186
GLN
183
A
VAL
184
n
187
VAL
184
A
GLU
185
n
188
GLU
185
A
ASN
186
n
189
ASN
186
A
SER
187
n
190
SER
187
A
PHE
188
n
191
PHE
188
A
THR
189
n
192
THR
189
A
GLN
190
n
193
GLN
190
A
PRO
191
n
194
PRO
191
A
ASN
192
n
195
ASN
192
A
ALA
193
n
196
ALA
193
A
ALA
194
n
197
ALA
194
A
MET
195
n
198
MET
195
A
ASN
196
n
199
ASN
196
A
ILE
197
n
200
ILE
197
A
GLN
198
n
201
GLN
198
A
MET
199
n
202
MET
199
A
LEU
200
n
203
LEU
200
A
GLU
201
n
204
GLU
201
A
TRP
202
n
205
TRP
202
A
ALA
203
n
206
ALA
203
A
LEU
204
n
207
LEU
204
A
ASP
205
n
208
ASP
205
A
VAL
206
n
209
VAL
206
A
THR
207
n
210
THR
207
A
LYS
208
n
211
LYS
208
A
GLY
209
n
212
GLY
209
A
SER
210
n
213
SER
210
A
LYS
211
n
214
LYS
211
A
GLY
212
n
215
GLY
212
A
ASP
213
n
216
ASP
213
A
LEU
214
n
217
LEU
214
A
LEU
215
n
218
LEU
215
A
GLU
216
n
219
GLU
216
A
LEU
217
n
220
LEU
217
A
TYR
218
n
221
TYR
218
A
CYS
219
n
222
CYS
219
A
GLY
220
n
223
GLY
220
A
ASN
221
n
224
ASN
221
A
GLY
222
n
225
GLY
222
A
ASN
223
n
226
ASN
223
A
PHE
224
n
227
PHE
224
A
SER
225
n
228
SER
225
A
LEU
226
n
229
LEU
226
A
ALA
227
n
230
ALA
227
A
LEU
228
n
231
LEU
228
A
ALA
229
n
232
ALA
229
A
ARG
230
n
233
ARG
230
A
ASN
231
n
234
ASN
231
A
PHE
232
n
235
PHE
232
A
ASP
233
n
236
ASP
233
A
ARG
234
n
237
ARG
234
A
VAL
235
n
238
VAL
235
A
LEU
236
n
239
LEU
236
A
ALA
237
n
240
ALA
237
A
THR
238
n
241
THR
238
A
GLU
239
n
242
GLU
239
A
ILE
240
n
243
ILE
240
A
ALA
241
n
244
ALA
241
A
LYS
242
n
245
LYS
242
A
PRO
243
n
246
PRO
243
A
SER
244
n
247
SER
244
A
VAL
245
n
248
VAL
245
A
ALA
246
n
249
ALA
246
A
ALA
247
n
250
ALA
247
A
ALA
248
n
251
ALA
248
A
GLN
249
n
252
GLN
249
A
TYR
250
n
253
TYR
250
A
ASN
251
n
254
ASN
251
A
ILE
252
n
255
ILE
252
A
ALA
253
n
256
ALA
253
A
ALA
254
n
257
ALA
254
A
ASN
255
n
258
ASN
255
A
HIS
256
n
259
HIS
256
A
ILE
257
n
260
ILE
257
A
ASP
258
n
261
ASP
258
A
ASN
259
n
262
ASN
259
A
VAL
260
n
263
VAL
260
A
GLN
261
n
264
GLN
261
A
ILE
262
n
265
ILE
262
A
ILE
263
n
266
ILE
263
A
ARG
264
n
267
ARG
264
A
MET
265
n
268
MET
265
A
ALA
266
n
269
ALA
266
A
ALA
267
n
270
ALA
267
A
GLU
268
n
271
GLU
268
A
GLU
269
n
272
GLU
269
A
PHE
270
n
273
PHE
270
A
THR
271
n
274
THR
271
A
GLN
272
n
275
GLN
272
A
ALA
273
n
276
ALA
273
A
MET
274
n
277
MET
274
A
ASN
275
n
278
ASN
275
A
GLY
276
n
279
GLY
276
A
VAL
277
n
280
VAL
277
A
ARG
278
n
281
ARG
278
A
GLU
279
n
282
GLU
279
A
PHE
280
n
283
PHE
280
A
ASN
281
n
284
ASN
281
A
ARG
282
n
285
ARG
282
A
LEU
283
n
286
LEU
283
A
GLN
284
n
287
GLN
284
A
GLY
285
n
288
GLY
285
A
ILE
286
n
289
ILE
286
A
ASP
287
n
290
ASP
287
A
LEU
288
n
291
LEU
288
A
LYS
289
n
292
LYS
289
A
SER
290
n
293
SER
290
A
TYR
291
n
294
TYR
291
A
GLN
292
n
295
GLN
292
A
CYS
293
n
296
CYS
293
A
GLU
294
n
297
GLU
294
A
THR
295
n
298
THR
295
A
ILE
296
n
299
ILE
296
A
PHE
297
n
300
PHE
297
A
VAL
298
n
301
VAL
298
A
ASP
299
n
302
ASP
299
A
PRO
300
n
303
PRO
300
A
PRO
301
n
304
PRO
301
A
ARG
302
n
305
ARG
302
A
SER
303
n
306
SER
303
A
GLY
304
n
307
GLY
304
A
LEU
305
n
308
LEU
305
A
ASP
306
n
309
ASP
306
A
SER
307
n
310
SER
307
A
GLU
308
n
311
GLU
308
A
THR
309
n
312
THR
309
A
GLU
310
n
313
GLU
310
A
LYS
311
n
314
LYS
311
A
MET
312
n
315
MET
312
A
VAL
313
n
316
VAL
313
A
GLN
314
n
317
GLN
314
A
ALA
315
n
318
ALA
315
A
TYR
316
n
319
TYR
316
A
PRO
317
n
320
PRO
317
A
ARG
318
n
321
ARG
318
A
ILE
319
n
322
ILE
319
A
LEU
320
n
323
LEU
320
A
TYR
321
n
324
TYR
321
A
ILE
322
n
325
ILE
322
A
SER
323
n
326
SER
323
A
CYS
324
n
327
CYS
324
A
ASN
325
n
328
ASN
325
A
PRO
326
n
329
PRO
326
A
GLU
327
n
330
GLU
327
A
THR
328
n
331
THR
328
A
LEU
329
n
332
LEU
329
A
CYS
330
n
333
CYS
330
A
LYS
331
n
334
LYS
331
A
ASN
332
n
335
ASN
332
A
LEU
333
n
336
LEU
333
A
GLU
334
n
337
GLU
334
A
THR
335
n
338
THR
335
A
LEU
336
n
339
LEU
336
A
SER
337
n
340
SER
337
A
GLN
338
n
341
GLN
338
A
THR
339
n
342
THR
339
A
HIS
340
n
343
HIS
340
A
LYS
341
n
344
LYS
341
A
VAL
342
n
345
VAL
342
A
GLU
343
n
346
GLU
343
A
ARG
344
n
347
ARG
344
A
LEU
345
n
348
LEU
345
A
ALA
346
n
349
ALA
346
A
LEU
347
n
350
LEU
347
A
PHE
348
n
351
PHE
348
A
ASP
349
n
352
ASP
349
A
GLN
350
n
353
GLN
350
A
PHE
351
n
354
PHE
351
A
PRO
352
n
355
PRO
352
A
TYR
353
n
356
TYR
353
A
THR
354
n
357
THR
354
A
HIS
355
n
358
HIS
355
A
HIS
356
n
359
HIS
356
A
MET
357
n
360
MET
357
A
GLN
358
n
361
GLN
358
A
CYS
359
n
362
CYS
359
A
GLY
360
n
363
GLY
360
A
VAL
361
n
364
VAL
361
A
LEU
362
n
365
LEU
362
A
LEU
363
n
366
LEU
363
A
THR
364
n
367
THR
364
A
ALA
365
n
368
ALA
365
A
LYS
366
n
369
LYS
366
A
GLY
-2
n
1
GLY
-2
B
SER
-1
n
2
SER
-1
B
HIS
0
n
3
HIS
0
B
MET
1
n
4
MET
1
B
THR
2
n
5
THR
2
B
PRO
3
n
6
PRO
3
B
GLU
4
n
7
GLU
4
B
HIS
5
n
8
HIS
5
B
LEU
6
n
9
LEU
6
B
PRO
7
n
10
PRO
7
B
THR
8
n
11
THR
8
B
GLU
9
n
12
GLU
9
B
GLN
10
n
13
GLN
10
B
TYR
11
n
14
TYR
11
B
GLU
12
n
15
GLU
12
B
ALA
13
n
16
ALA
13
B
GLN
14
n
17
GLN
14
B
LEU
15
n
18
LEU
15
B
ALA
16
n
19
ALA
16
B
GLU
17
n
20
GLU
17
B
LYS
18
n
21
LYS
18
B
VAL
19
n
22
VAL
19
B
VAL
20
n
23
VAL
20
B
ARG
21
n
24
ARG
21
B
LEU
22
n
25
LEU
22
B
GLN
23
n
26
GLN
23
B
SER
24
n
27
SER
24
B
MET
25
n
28
MET
25
B
MET
26
n
29
MET
26
B
ALA
27
n
30
ALA
27
B
PRO
28
n
31
PRO
28
B
PHE
29
n
32
PHE
29
B
SER
30
n
33
SER
30
B
ASP
31
n
34
ASP
31
B
LEU
32
n
35
LEU
32
B
VAL
33
n
36
VAL
33
B
PRO
34
n
37
PRO
34
B
GLU
35
n
38
GLU
35
B
VAL
36
n
39
VAL
36
B
PHE
37
n
40
PHE
37
B
ARG
38
n
41
ARG
38
B
SER
39
n
42
SER
39
B
PRO
40
n
43
PRO
40
B
VAL
41
n
44
VAL
41
B
SER
42
n
45
SER
42
B
HIS
43
n
46
HIS
43
B
TYR
44
n
47
TYR
44
B
ARG
45
n
48
ARG
45
B
MET
46
n
49
MET
46
B
ARG
47
n
50
ARG
47
B
ALA
48
n
51
ALA
48
B
GLU
49
n
52
GLU
49
B
PHE
50
n
53
PHE
50
B
ARG
51
n
54
ARG
51
B
ILE
52
n
55
ILE
52
B
TRP
53
n
56
TRP
53
B
HIS
54
n
57
HIS
54
B
ASP
55
n
58
ASP
55
B
GLY
56
n
59
GLY
56
B
ASP
57
n
60
ASP
57
B
ASP
58
n
61
ASP
58
B
LEU
59
n
62
LEU
59
B
TYR
60
n
63
TYR
60
B
HIS
61
n
64
HIS
61
B
ILE
62
n
65
ILE
62
B
ILE
63
n
66
ILE
63
B
PHE
64
n
67
PHE
64
B
ASP
65
n
68
ASP
65
B
GLN
66
n
69
GLN
66
B
GLN
67
n
70
GLN
67
B
THR
68
n
71
THR
68
B
LYS
69
n
72
LYS
69
B
SER
70
n
73
SER
70
B
ARG
71
n
74
ARG
71
B
ILE
72
n
75
ILE
72
B
ARG
73
n
76
ARG
73
B
VAL
74
n
77
VAL
74
B
ASP
75
n
78
ASP
75
B
SER
76
n
79
SER
76
B
PHE
77
n
80
PHE
77
B
PRO
78
n
81
PRO
78
B
ALA
79
n
82
ALA
79
B
ALA
80
n
83
ALA
80
B
SER
81
n
84
SER
81
B
GLU
82
n
85
GLU
82
B
LEU
83
n
86
LEU
83
B
ILE
84
n
87
ILE
84
B
ASN
85
n
88
ASN
85
B
GLN
86
n
89
GLN
86
B
LEU
87
n
90
LEU
87
B
MET
88
n
91
MET
88
B
THR
89
n
92
THR
89
B
ALA
90
n
93
ALA
90
B
MET
91
n
94
MET
91
B
ILE
92
n
95
ILE
92
B
ALA
93
n
96
ALA
93
B
GLY
94
n
97
GLY
94
B
VAL
95
n
98
VAL
95
B
ARG
96
n
99
ARG
96
B
ASN
97
n
100
ASN
97
B
ASN
98
n
101
ASN
98
B
PRO
99
n
102
PRO
99
B
VAL
100
n
103
VAL
100
B
LEU
101
n
104
LEU
101
B
ARG
102
n
105
ARG
102
B
HIS
103
n
106
HIS
103
B
LYS
104
n
107
LYS
104
B
LEU
105
n
108
LEU
105
B
PHE
106
n
109
PHE
106
B
GLN
107
n
110
GLN
107
B
ILE
108
n
111
ILE
108
B
ASP
109
n
112
ASP
109
B
TYR
110
n
113
TYR
110
B
LEU
111
n
114
LEU
111
B
THR
112
n
115
THR
112
B
THR
113
n
116
THR
113
B
LEU
114
n
117
LEU
114
B
SER
115
n
118
SER
115
B
ASN
116
n
119
ASN
116
B
GLN
117
n
120
GLN
117
B
ALA
118
n
121
ALA
118
B
VAL
119
n
122
VAL
119
B
VAL
120
n
123
VAL
120
B
SER
121
n
124
SER
121
B
LEU
122
n
125
LEU
122
B
LEU
123
n
126
LEU
123
B
TYR
124
n
127
TYR
124
B
HIS
125
n
128
HIS
125
B
LYS
126
n
129
LYS
126
B
LYS
127
n
130
LYS
127
B
LEU
128
n
131
LEU
128
B
ASP
129
n
132
ASP
129
B
ASP
130
n
133
ASP
130
B
GLU
131
n
134
GLU
131
B
TRP
132
n
135
TRP
132
B
ARG
133
n
136
ARG
133
B
GLN
134
n
137
GLN
134
B
GLU
135
n
138
GLU
135
B
ALA
136
n
139
ALA
136
B
GLU
137
n
140
GLU
137
B
ALA
138
n
141
ALA
138
B
LEU
139
n
142
LEU
139
B
ARG
140
n
143
ARG
140
B
ASP
141
n
144
ASP
141
B
ALA
142
n
145
ALA
142
B
LEU
143
n
146
LEU
143
B
ARG
144
n
147
ARG
144
B
ALA
145
n
148
ALA
145
B
GLN
146
n
149
GLN
146
B
ASN
147
n
150
ASN
147
B
LEU
148
n
151
LEU
148
B
ASN
149
n
152
ASN
149
B
VAL
150
n
153
VAL
150
B
HIS
151
n
154
HIS
151
B
LEU
152
n
155
LEU
152
B
ILE
153
n
156
ILE
153
B
GLY
154
n
157
GLY
154
B
ARG
155
n
158
ARG
155
B
ALA
156
n
159
ALA
156
B
THR
157
n
160
THR
157
B
LYS
158
n
161
LYS
158
B
THR
159
n
162
THR
159
B
LYS
160
n
163
LYS
160
B
ILE
161
n
164
ILE
161
B
GLU
162
n
165
GLU
162
B
LEU
163
n
166
LEU
163
B
ASP
164
n
167
ASP
164
B
GLN
165
n
168
GLN
165
B
ASP
166
n
169
ASP
166
B
TYR
167
n
170
TYR
167
B
ILE
168
n
171
ILE
168
B
ASP
169
n
172
ASP
169
B
GLU
170
n
173
GLU
170
B
ARG
171
n
174
ARG
171
B
LEU
172
n
175
LEU
172
B
PRO
173
n
176
PRO
173
B
VAL
174
n
177
VAL
174
B
ALA
175
n
178
ALA
175
B
GLY
176
n
179
GLY
176
B
LYS
177
n
180
LYS
177
B
GLU
178
n
181
GLU
178
B
MET
179
n
182
MET
179
B
ILE
180
n
183
ILE
180
B
TYR
181
n
184
TYR
181
B
ARG
182
n
185
ARG
182
B
GLN
183
n
186
GLN
183
B
VAL
184
n
187
VAL
184
B
GLU
185
n
188
GLU
185
B
ASN
186
n
189
ASN
186
B
SER
187
n
190
SER
187
B
PHE
188
n
191
PHE
188
B
THR
189
n
192
THR
189
B
GLN
190
n
193
GLN
190
B
PRO
191
n
194
PRO
191
B
ASN
192
n
195
ASN
192
B
ALA
193
n
196
ALA
193
B
ALA
194
n
197
ALA
194
B
MET
195
n
198
MET
195
B
ASN
196
n
199
ASN
196
B
ILE
197
n
200
ILE
197
B
GLN
198
n
201
GLN
198
B
MET
199
n
202
MET
199
B
LEU
200
n
203
LEU
200
B
GLU
201
n
204
GLU
201
B
TRP
202
n
205
TRP
202
B
ALA
203
n
206
ALA
203
B
LEU
204
n
207
LEU
204
B
ASP
205
n
208
ASP
205
B
VAL
206
n
209
VAL
206
B
THR
207
n
210
THR
207
B
LYS
208
n
211
LYS
208
B
GLY
209
n
212
GLY
209
B
SER
210
n
213
SER
210
B
LYS
211
n
214
LYS
211
B
GLY
212
n
215
GLY
212
B
ASP
213
n
216
ASP
213
B
LEU
214
n
217
LEU
214
B
LEU
215
n
218
LEU
215
B
GLU
216
n
219
GLU
216
B
LEU
217
n
220
LEU
217
B
TYR
218
n
221
TYR
218
B
CYS
219
n
222
CYS
219
B
GLY
220
n
223
GLY
220
B
ASN
221
n
224
ASN
221
B
GLY
222
n
225
GLY
222
B
ASN
223
n
226
ASN
223
B
PHE
224
n
227
PHE
224
B
SER
225
n
228
SER
225
B
LEU
226
n
229
LEU
226
B
ALA
227
n
230
ALA
227
B
LEU
228
n
231
LEU
228
B
ALA
229
n
232
ALA
229
B
ARG
230
n
233
ARG
230
B
ASN
231
n
234
ASN
231
B
PHE
232
n
235
PHE
232
B
ASP
233
n
236
ASP
233
B
ARG
234
n
237
ARG
234
B
VAL
235
n
238
VAL
235
B
LEU
236
n
239
LEU
236
B
ALA
237
n
240
ALA
237
B
THR
238
n
241
THR
238
B
GLU
239
n
242
GLU
239
B
ILE
240
n
243
ILE
240
B
ALA
241
n
244
ALA
241
B
LYS
242
n
245
LYS
242
B
PRO
243
n
246
PRO
243
B
SER
244
n
247
SER
244
B
VAL
245
n
248
VAL
245
B
ALA
246
n
249
ALA
246
B
ALA
247
n
250
ALA
247
B
ALA
248
n
251
ALA
248
B
GLN
249
n
252
GLN
249
B
TYR
250
n
253
TYR
250
B
ASN
251
n
254
ASN
251
B
ILE
252
n
255
ILE
252
B
ALA
253
n
256
ALA
253
B
ALA
254
n
257
ALA
254
B
ASN
255
n
258
ASN
255
B
HIS
256
n
259
HIS
256
B
ILE
257
n
260
ILE
257
B
ASP
258
n
261
ASP
258
B
ASN
259
n
262
ASN
259
B
VAL
260
n
263
VAL
260
B
GLN
261
n
264
GLN
261
B
ILE
262
n
265
ILE
262
B
ILE
263
n
266
ILE
263
B
ARG
264
n
267
ARG
264
B
MET
265
n
268
MET
265
B
ALA
266
n
269
ALA
266
B
ALA
267
n
270
ALA
267
B
GLU
268
n
271
GLU
268
B
GLU
269
n
272
GLU
269
B
PHE
270
n
273
PHE
270
B
THR
271
n
274
THR
271
B
GLN
272
n
275
GLN
272
B
ALA
273
n
276
ALA
273
B
MET
274
n
277
MET
274
B
ASN
275
n
278
ASN
275
B
GLY
276
n
279
GLY
276
B
VAL
277
n
280
VAL
277
B
ARG
278
n
281
ARG
278
B
GLU
279
n
282
GLU
279
B
PHE
280
n
283
PHE
280
B
ASN
281
n
284
ASN
281
B
ARG
282
n
285
ARG
282
B
LEU
283
n
286
LEU
283
B
GLN
284
n
287
GLN
284
B
GLY
285
n
288
GLY
285
B
ILE
286
n
289
ILE
286
B
ASP
287
n
290
ASP
287
B
LEU
288
n
291
LEU
288
B
LYS
289
n
292
LYS
289
B
SER
290
n
293
SER
290
B
TYR
291
n
294
TYR
291
B
GLN
292
n
295
GLN
292
B
CYS
293
n
296
CYS
293
B
GLU
294
n
297
GLU
294
B
THR
295
n
298
THR
295
B
ILE
296
n
299
ILE
296
B
PHE
297
n
300
PHE
297
B
VAL
298
n
301
VAL
298
B
ASP
299
n
302
ASP
299
B
PRO
300
n
303
PRO
300
B
PRO
301
n
304
PRO
301
B
ARG
302
n
305
ARG
302
B
SER
303
n
306
SER
303
B
GLY
304
n
307
GLY
304
B
LEU
305
n
308
LEU
305
B
ASP
306
n
309
ASP
306
B
SER
307
n
310
SER
307
B
GLU
308
n
311
GLU
308
B
THR
309
n
312
THR
309
B
GLU
310
n
313
GLU
310
B
LYS
311
n
314
LYS
311
B
MET
312
n
315
MET
312
B
VAL
313
n
316
VAL
313
B
GLN
314
n
317
GLN
314
B
ALA
315
n
318
ALA
315
B
TYR
316
n
319
TYR
316
B
PRO
317
n
320
PRO
317
B
ARG
318
n
321
ARG
318
B
ILE
319
n
322
ILE
319
B
LEU
320
n
323
LEU
320
B
TYR
321
n
324
TYR
321
B
ILE
322
n
325
ILE
322
B
SER
323
n
326
SER
323
B
CYS
324
n
327
CYS
324
B
ASN
325
n
328
ASN
325
B
PRO
326
n
329
PRO
326
B
GLU
327
n
330
GLU
327
B
THR
328
n
331
THR
328
B
LEU
329
n
332
LEU
329
B
CYS
330
n
333
CYS
330
B
LYS
331
n
334
LYS
331
B
ASN
332
n
335
ASN
332
B
LEU
333
n
336
LEU
333
B
GLU
334
n
337
GLU
334
B
THR
335
n
338
THR
335
B
LEU
336
n
339
LEU
336
B
SER
337
n
340
SER
337
B
GLN
338
n
341
GLN
338
B
THR
339
n
342
THR
339
B
HIS
340
n
343
HIS
340
B
LYS
341
n
344
LYS
341
B
VAL
342
n
345
VAL
342
B
GLU
343
n
346
GLU
343
B
ARG
344
n
347
ARG
344
B
LEU
345
n
348
LEU
345
B
ALA
346
n
349
ALA
346
B
LEU
347
n
350
LEU
347
B
PHE
348
n
351
PHE
348
B
ASP
349
n
352
ASP
349
B
GLN
350
n
353
GLN
350
B
PHE
351
n
354
PHE
351
B
PRO
352
n
355
PRO
352
B
TYR
353
n
356
TYR
353
B
THR
354
n
357
THR
354
B
HIS
355
n
358
HIS
355
B
HIS
356
n
359
HIS
356
B
MET
357
n
360
MET
357
B
GLN
358
n
361
GLN
358
B
CYS
359
n
362
CYS
359
B
GLY
360
n
363
GLY
360
B
VAL
361
n
364
VAL
361
B
LEU
362
n
365
LEU
362
B
LEU
363
n
366
LEU
363
B
THR
364
n
367
THR
364
B
ALA
365
n
368
ALA
365
B
LYS
366
n
369
LYS
366
B
G
48
n
1
G
48
C
C
49
n
2
C
49
C
U
50
n
3
U
50
C
G
51
n
4
G
51
C
U
52
n
5
U
52
C
G
53
n
6
G
53
C
5MU
54
n
7
5MU
54
C
U
55
n
8
U
55
C
C
56
n
9
C
56
C
G
57
n
10
G
57
C
A
58
n
11
A
58
C
U
59
n
12
U
59
C
C
60
n
13
C
60
C
C
61
n
14
C
61
C
A
62
n
15
A
62
C
C
63
n
16
C
63
C
A
64
n
17
A
64
C
G
65
n
18
G
65
C
C
66
n
19
C
66
C
G
48
n
1
G
48
D
C
49
n
2
C
49
D
U
50
n
3
U
50
D
G
51
n
4
G
51
D
U
52
n
5
U
52
D
G
53
n
6
G
53
D
5MU
54
n
7
5MU
54
D
U
55
n
8
U
55
D
C
56
n
9
C
56
D
G
57
n
10
G
57
D
A
58
n
11
A
58
D
U
59
n
12
U
59
D
C
60
n
13
C
60
D
C
61
n
14
C
61
D
A
62
n
15
A
62
D
C
63
n
16
C
63
D
A
64
n
17
A
64
D
G
65
n
18
G
65
D
C
66
n
19
C
66
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
2580
-17
18310
2590
-20
18480
C
5MU
54
5-METHYLURIDINE 5'-MONOPHOSPHATE
C
5MU
7
U
D
5MU
54
5-METHYLURIDINE 5'-MONOPHOSPHATE
D
5MU
7
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
35
A
N
GLU
38
A
O
LEU
345
A
O
LEU
348
A
N
GLU
343
A
N
GLU
346
A
O
LEU
362
A
O
LEU
365
A
O
LEU
363
A
O
LEU
366
A
N
ILE
319
A
N
ILE
322
A
O
ARG
318
A
O
ARG
321
A
N
ILE
296
A
N
ILE
299
A
O
PHE
297
A
O
PHE
300
A
N
LEU
215
A
N
LEU
218
A
N
LEU
214
A
N
LEU
217
A
O
LEU
236
A
O
LEU
239
A
N
VAL
235
A
N
VAL
238
A
O
GLN
261
A
O
GLN
264
A
O
ILE
72
A
O
ILE
75
A
N
ILE
63
A
N
ILE
66
A
O
ASP
58
A
O
ASP
61
A
N
ASP
55
A
N
ASP
58
A
N
ILE
52
A
N
ILE
55
A
O
PHE
106
A
O
PHE
109
A
N
ASP
109
A
N
ASP
112
A
O
SER
121
A
O
SER
124
A
N
LEU
122
A
N
LEU
125
A
O
ILE
153
A
O
ILE
156
A
N
ALA
156
A
N
ALA
159
A
O
THR
159
A
O
THR
162
A
N
ILE
168
A
N
ILE
171
A
O
GLN
183
A
O
GLN
186
B
N
GLU
35
B
N
GLU
38
B
O
LEU
345
B
O
LEU
348
B
N
GLU
343
B
N
GLU
346
B
O
LEU
362
B
O
LEU
365
B
O
LEU
363
B
O
LEU
366
B
N
ILE
319
B
N
ILE
322
B
O
LEU
320
B
O
LEU
323
B
N
VAL
298
B
N
VAL
301
B
O
PHE
297
B
O
PHE
300
B
N
LEU
215
B
N
LEU
218
B
N
GLU
216
B
N
GLU
219
B
O
THR
238
B
O
THR
241
B
N
VAL
235
B
N
VAL
238
B
O
GLN
261
B
O
GLN
264
B
O
ILE
72
B
O
ILE
75
B
N
ILE
63
B
N
ILE
66
B
O
ASP
58
B
O
ASP
61
B
N
ASP
55
B
N
ASP
58
B
N
ILE
52
B
N
ILE
55
B
O
PHE
106
B
O
PHE
109
B
N
ASP
109
B
N
ASP
112
B
O
SER
121
B
O
SER
124
B
N
VAL
120
B
N
VAL
123
B
O
HIS
151
B
O
HIS
154
B
N
ALA
156
B
N
ALA
159
B
O
THR
159
B
O
THR
162
B
N
GLU
170
B
N
GLU
173
B
O
TYR
181
B
O
TYR
184
1
A
CG
LYS
69
A
CG
LYS
72
1
Y
1
A
CD
LYS
69
A
CD
LYS
72
1
Y
1
A
CE
LYS
69
A
CE
LYS
72
1
Y
1
A
NZ
LYS
69
A
NZ
LYS
72
1
Y
1
A
CG
LYS
242
A
CG
LYS
245
1
Y
1
A
CD
LYS
242
A
CD
LYS
245
1
Y
1
A
CE
LYS
242
A
CE
LYS
245
1
Y
1
A
NZ
LYS
242
A
NZ
LYS
245
1
Y
1
A
CG
LYS
341
A
CG
LYS
344
1
Y
1
A
CD
LYS
341
A
CD
LYS
344
1
Y
1
A
CE
LYS
341
A
CE
LYS
344
1
Y
1
A
NZ
LYS
341
A
NZ
LYS
344
1
Y
1
B
CG
LYS
242
B
CG
LYS
245
1
Y
1
B
CD
LYS
242
B
CD
LYS
245
1
Y
1
B
CE
LYS
242
B
CE
LYS
245
1
Y
1
B
NZ
LYS
242
B
NZ
LYS
245
1
Y
1
B
CG
LYS
341
B
CG
LYS
344
1
Y
1
B
CD
LYS
341
B
CD
LYS
344
1
Y
1
B
CE
LYS
341
B
CE
LYS
344
1
Y
1
B
NZ
LYS
341
B
NZ
LYS
344
1
Y
1
B
B
OD1
O
ASN
HOH
281
507
1.92
1
B
B
O
O
ASP
HOH
213
465
1.94
1
B
B
O
O
HOH
HOH
530
535
1.95
1
A
A
NE2
O
GLN
HOH
66
432
2.06
1
B
B
O
O
HOH
HOH
534
545
2.16
1
A
A
OE1
O
GLN
HOH
292
406
2.17
1
A
A
O
O
HOH
HOH
378
391
2.17
1
B
B
OH
O
TYR
HOH
291
537
2.19
1
-5.90
0.80
109.40
103.50
C
C
C
O5'
C5'
C4'
G
G
G
48
48
48
N
1
-6.95
0.70
101.30
94.35
C
C
C
C3'
C2'
C1'
G
G
G
48
48
48
N
1
-12.13
1.90
104.00
91.87
C
C
C
O3'
P
O5'
G
C
C
48
49
49
Y
1
9.21
1.20
110.70
119.91
C
C
C
O5'
P
OP1
C
C
C
49
49
49
N
1
-6.37
1.00
104.00
97.63
C
C
C
O4'
C4'
C3'
C
C
C
49
49
49
N
1
-3.14
0.40
120.30
117.16
C
C
C
C6
N1
C2
C
C
C
49
49
49
N
1
4.89
0.70
118.00
122.89
C
C
C
N3
C4
N4
C
C
C
49
49
49
N
1
7.06
1.10
118.80
125.86
C
C
C
C2
N1
C1'
C
C
C
49
49
49
N
1
7.44
1.20
119.70
127.14
C
C
C
C3'
O3'
P
U
U
G
52
52
53
Y
1
5.44
0.70
108.50
113.94
C
C
C
O4'
C1'
N9
G
G
G
53
53
53
N
1
7.08
1.10
110.50
117.58
C
C
C
O3'
P
OP2
C
G
G
56
57
57
Y
1
-6.78
1.00
102.60
95.82
C
C
C
C4'
C3'
C2'
G
G
G
57
57
57
N
1
-7.39
0.70
101.30
93.91
C
C
C
C3'
C2'
C1'
G
G
G
57
57
57
N
1
4.37
0.70
119.90
124.27
C
C
C
N3
C2
N2
G
G
G
57
57
57
N
1
4.34
0.70
108.50
112.84
C
C
C
O4'
C1'
N9
A
A
A
58
58
58
N
1
-3.71
0.60
125.90
122.19
C
C
C
C5
C4
O4
U
U
U
59
59
59
N
1
9.28
1.50
119.60
128.88
C
C
C
OP1
P
OP2
C
C
C
61
61
61
N
1
4.37
0.50
117.40
121.77
C
C
C
C4
C5
C6
C
C
C
61
61
61
N
1
-3.80
0.50
121.00
117.20
C
C
C
C5
C6
N1
C
C
C
61
61
61
N
1
-6.57
1.00
104.00
97.43
D
D
D
O4'
C4'
C3'
U
U
U
50
50
50
N
1
-4.93
0.60
125.90
120.97
D
D
D
C5
C4
O4
U
U
U
50
50
50
N
1
5.58
0.70
119.40
124.98
D
D
D
N3
C4
O4
U
U
U
52
52
52
N
1
-4.37
0.60
125.90
121.53
D
D
D
C5
C4
O4
U
U
U
52
52
52
N
1
6.92
0.70
108.50
115.42
D
D
D
O4'
C1'
N9
G
G
G
53
53
53
N
1
-3.56
0.40
110.80
107.24
D
D
D
C4
C5
N7
G
G
G
53
53
53
N
1
3.31
0.50
104.30
107.61
D
D
D
C5
N7
C8
G
G
G
53
53
53
N
1
3.82
0.40
105.40
109.22
D
D
D
N9
C4
C5
G
G
G
53
53
53
N
1
10.72
1.20
119.70
130.42
D
D
D
C3'
O3'
P
5MU
5MU
U
54
54
55
Y
1
11.21
1.50
119.60
130.81
D
D
D
OP1
P
OP2
U
U
U
55
55
55
N
1
7.25
1.10
110.50
117.75
D
D
D
O3'
P
OP2
U
C
C
55
56
56
Y
1
-6.04
0.90
105.70
99.66
D
D
D
O5'
P
OP2
C
C
C
56
56
56
N
1
-5.18
0.60
125.10
119.92
D
D
D
C6
N1
C2
G
G
G
57
57
57
N
1
4.48
0.50
111.50
115.98
D
D
D
C5
C6
N1
G
G
G
57
57
57
N
1
-7.16
0.60
128.60
121.44
D
D
D
C5
C6
O6
G
G
G
57
57
57
N
1
-5.00
0.80
109.40
104.40
D
D
D
O5'
C5'
C4'
A
A
A
58
58
58
N
1
3.74
0.60
118.60
122.34
D
D
D
N1
C6
N6
A
A
A
58
58
58
N
1
C
C
C1'
N1
C
C
49
49
0.094
0.015
1.483
1.577
N
1
C
C
N3
C4
C
C
61
61
-0.043
0.007
1.335
1.292
N
1
D
D
P
O5'
G
G
53
53
0.081
0.010
1.593
1.674
N
1
D
D
P
O5'
U
U
55
55
0.070
0.010
1.593
1.663
N
1
D
D
C4
C5
G
G
57
57
-0.047
0.007
1.379
1.332
N
1
D
D
C5
N7
A
A
58
58
-0.043
0.006
1.388
1.345
N
1
A
A
OH
O
TYR
HOH
316
442
2.13
1_555
4_556
1
A
B
O
O
HOH
HOH
398
457
2.18
1_555
3_545
1
A
SER
-1
-157.15
39.48
1
A
PHE
77
-156.78
78.17
1
A
ASN
116
81.64
18.29
1
A
HIS
125
-97.79
53.39
1
A
ASN
147
82.50
10.62
1
A
ASP
164
-133.79
-48.70
1
A
ALA
175
29.34
62.15
1
A
MET
179
-162.04
119.83
1
A
TYR
218
48.26
79.97
1
A
ASN
223
-18.80
-75.99
1
A
MET
274
-64.58
-97.31
1
A
ARG
278
-175.98
113.72
1
A
GLN
284
-37.67
-38.88
1
A
ASN
325
-165.11
95.63
1
B
SER
-1
-160.72
115.22
1
B
PHE
77
-150.98
73.88
1
B
SER
81
-48.97
163.31
1
B
ASN
98
-115.91
77.37
1
B
ASN
116
81.59
23.31
1
B
HIS
125
-98.27
54.59
1
B
ALA
145
-38.58
-30.86
1
B
ASN
147
80.11
9.07
1
B
LYS
160
-150.32
87.33
1
B
ASP
164
-137.78
-46.14
1
B
ALA
175
20.12
66.77
1
B
TYR
218
49.05
78.57
1
B
ASN
223
-21.90
-73.96
1
B
MET
274
-65.46
-99.09
1
B
ARG
278
-173.71
112.47
1
B
ASN
325
-164.24
100.29
1
B
PHE
351
-116.53
66.03
47.563
-0.02
0.00
-0.01
0.00
0.00
0.01
0.945
0.907
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.28635
0.22509
0.22970
2.43
35.07
3230
38764
7.7
93.62
11.218
0.247
RANDOM
1
THROUGHOUT
SAD
0.461
0.310
0.80
0.80
1.20
PDB entry 2BH2
MAXIMUM LIKELIHOOD
MASK
2.43
35.07
261
6979
0
804
5914
0.016
0.022
6929
0.002
0.020
4378
1.781
2.105
9568
1.434
3.001
10684
6.715
5.000
736
35.587
24.304
309
20.099
15.000
1055
15.169
15.000
46
0.085
0.200
1102
0.007
0.021
7116
0.003
0.020
1292
0.213
0.200
257
0.007
0.200
1
0.135
0.200
22
0.250
0.200
74
0.275
0.200
7
0.780
1.500
3692
0.143
1.500
1470
1.453
2.000
5963
2.102
3.000
3237
3.392
4.500
3605
2
A
2
531
X-RAY DIFFRACTION
medium positional
0.00
0.50
2
A
2
531
X-RAY DIFFRACTION
medium thermal
0.00
5.00
0.420
0.366
2.493
209
2533
20
82.81
2.43
35.1
3BT7
90859
42023
2
2
0.078
1
5.7
2.2
0.27
2.43
2.49
1.7
1
2.0
83.7
data reduction
A.G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
package
phasing
K. Cowtan
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
DM
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data collection
ADSC
Quantum
data scaling
SCALA
Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
A
PRO
7
A
PRO
10
HELX_P
A
GLU
9
A
GLU
12
5
1
3
A
GLN
10
A
GLN
13
HELX_P
A
ALA
27
A
ALA
30
1
2
18
A
SER
81
A
SER
84
HELX_P
A
ARG
96
A
ARG
99
1
3
16
A
ASN
98
A
ASN
101
HELX_P
A
HIS
103
A
HIS
106
1
4
6
A
ASP
129
A
ASP
132
HELX_P
A
ALA
145
A
ALA
148
1
5
17
A
ASN
192
A
ASN
195
HELX_P
A
THR
207
A
THR
210
1
6
16
A
GLY
222
A
GLY
225
HELX_P
A
ALA
229
A
ALA
232
1
7
8
A
ARG
230
A
ARG
233
HELX_P
A
PHE
232
A
PHE
235
5
8
3
A
ALA
241
A
ALA
244
HELX_P
A
ASN
255
A
ASN
258
1
9
15
A
ALA
267
A
ALA
270
HELX_P
A
ASN
275
A
ASN
278
1
10
9
A
ARG
282
A
ARG
285
HELX_P
A
ILE
286
A
ILE
289
5
11
5
A
ASP
287
A
ASP
290
HELX_P
A
TYR
291
A
TYR
294
5
12
5
A
ASP
306
A
ASP
309
HELX_P
A
GLN
314
A
GLN
317
1
13
9
A
ASN
325
A
ASN
328
HELX_P
A
THR
339
A
THR
342
1
14
15
B
PRO
7
B
PRO
10
HELX_P
B
GLU
9
B
GLU
12
5
15
3
B
GLN
10
B
GLN
13
HELX_P
B
ALA
27
B
ALA
30
1
16
18
B
SER
81
B
SER
84
HELX_P
B
ARG
96
B
ARG
99
1
17
16
B
ASN
98
B
ASN
101
HELX_P
B
HIS
103
B
HIS
106
1
18
6
B
ASP
129
B
ASP
132
HELX_P
B
ALA
145
B
ALA
148
1
19
17
B
ASN
192
B
ASN
195
HELX_P
B
THR
207
B
THR
210
1
20
16
B
GLY
222
B
GLY
225
HELX_P
B
ALA
229
B
ALA
232
1
21
8
B
ARG
230
B
ARG
233
HELX_P
B
PHE
232
B
PHE
235
5
22
3
B
ALA
241
B
ALA
244
HELX_P
B
ASN
255
B
ASN
258
1
23
15
B
ALA
267
B
ALA
270
HELX_P
B
ASN
275
B
ASN
278
1
24
9
B
ARG
282
B
ARG
285
HELX_P
B
ILE
286
B
ILE
289
5
25
5
B
ASP
287
B
ASP
290
HELX_P
B
TYR
291
B
TYR
294
5
26
5
B
ASP
306
B
ASP
309
HELX_P
B
ALA
315
B
ALA
318
1
27
10
B
ASN
325
B
ASN
328
HELX_P
B
THR
339
B
THR
342
1
28
15
covale
2.072
none
A
CYS
324
A
SG
CYS
327
1_555
C
5MU
54
C
C6
5MU
7
1_555
covale
1.950
none
B
CYS
324
B
SG
CYS
327
1_555
D
5MU
54
D
C6
5MU
7
1_555
covale
1.623
both
C
G
53
C
O3'
G
6
1_555
C
5MU
54
C
P
5MU
7
1_555
covale
1.586
both
C
5MU
54
C
O3'
5MU
7
1_555
C
U
55
C
P
U
8
1_555
covale
1.565
both
D
G
53
D
O3'
G
6
1_555
D
5MU
54
D
P
5MU
7
1_555
covale
1.586
both
D
5MU
54
D
O3'
5MU
7
1_555
D
U
55
D
P
U
8
1_555
hydrog
WATSON-CRICK
C
G
48
C
N1
G
1
1_555
C
C
66
C
N3
C
19
1_555
hydrog
WATSON-CRICK
C
G
48
C
N2
G
1
1_555
C
C
66
C
O2
C
19
1_555
hydrog
WATSON-CRICK
C
G
48
C
O6
G
1
1_555
C
C
66
C
N4
C
19
1_555
hydrog
WATSON-CRICK
C
C
49
C
N3
C
2
1_555
C
G
65
C
N1
G
18
1_555
hydrog
WATSON-CRICK
C
C
49
C
N4
C
2
1_555
C
G
65
C
O6
G
18
1_555
hydrog
WATSON-CRICK
C
C
49
C
O2
C
2
1_555
C
G
65
C
N2
G
18
1_555
hydrog
WATSON-CRICK
C
U
50
C
N3
U
3
1_555
C
A
64
C
N1
A
17
1_555
hydrog
WATSON-CRICK
C
U
50
C
O4
U
3
1_555
C
A
64
C
N6
A
17
1_555
hydrog
WATSON-CRICK
C
G
51
C
N1
G
4
1_555
C
C
63
C
N3
C
16
1_555
hydrog
WATSON-CRICK
C
G
51
C
N2
G
4
1_555
C
C
63
C
O2
C
16
1_555
hydrog
WATSON-CRICK
C
G
51
C
O6
G
4
1_555
C
C
63
C
N4
C
16
1_555
hydrog
WATSON-CRICK
C
U
52
C
N3
U
5
1_555
C
A
62
C
N1
A
15
1_555
hydrog
WATSON-CRICK
C
U
52
C
O4
U
5
1_555
C
A
62
C
N6
A
15
1_555
hydrog
G-C PAIR
C
G
53
C
O6
G
6
1_555
C
C
61
C
N4
C
14
1_555
hydrog
WATSON-CRICK
D
G
48
D
N1
G
1
1_555
D
C
66
D
N3
C
19
1_555
hydrog
WATSON-CRICK
D
G
48
D
N2
G
1
1_555
D
C
66
D
O2
C
19
1_555
hydrog
WATSON-CRICK
D
G
48
D
O6
G
1
1_555
D
C
66
D
N4
C
19
1_555
hydrog
WATSON-CRICK
D
C
49
D
N3
C
2
1_555
D
G
65
D
N1
G
18
1_555
hydrog
WATSON-CRICK
D
C
49
D
N4
C
2
1_555
D
G
65
D
O6
G
18
1_555
hydrog
WATSON-CRICK
D
C
49
D
O2
C
2
1_555
D
G
65
D
N2
G
18
1_555
hydrog
WATSON-CRICK
D
U
50
D
N3
U
3
1_555
D
A
64
D
N1
A
17
1_555
hydrog
WATSON-CRICK
D
U
50
D
O4
U
3
1_555
D
A
64
D
N6
A
17
1_555
hydrog
WATSON-CRICK
D
G
51
D
N1
G
4
1_555
D
C
63
D
N3
C
16
1_555
hydrog
WATSON-CRICK
D
G
51
D
N2
G
4
1_555
D
C
63
D
O2
C
16
1_555
hydrog
WATSON-CRICK
D
G
51
D
O6
G
4
1_555
D
C
63
D
N4
C
16
1_555
hydrog
WATSON-CRICK
D
U
52
D
N3
U
5
1_555
D
A
62
D
N1
A
15
1_555
hydrog
WATSON-CRICK
D
U
52
D
O4
U
5
1_555
D
A
62
D
N6
A
15
1_555
hydrog
WATSON-CRICK
D
G
53
D
N1
G
6
1_555
D
C
61
D
N3
C
14
1_555
hydrog
WATSON-CRICK
D
G
53
D
N2
G
6
1_555
D
C
61
D
O2
C
14
1_555
hydrog
WATSON-CRICK
D
G
53
D
O6
G
6
1_555
D
C
61
D
N4
C
14
1_555
TRANSFERASE/RNA
methyluridine, methyltransferase, TrmA, RUMT, S-adenosyl-L-methionine, tRNA processing, TRANSFERASE-RNA COMPLEX
A
B
A
B
A
B
A
B
A
B
A
B
A
B
C
D
A
MET
1
A
MET
4
A
ASP
65
A
ASP
68
1
B
MET
1
B
MET
4
B
ASP
65
B
ASP
68
1
A
GLN
67
A
GLN
70
A
THR
68
A
THR
71
1
B
GLN
67
B
GLN
70
B
THR
68
B
THR
71
1
A
SER
70
A
SER
73
A
SER
70
A
SER
73
1
B
SER
70
B
SER
73
B
SER
70
B
SER
73
1
A
ILE
72
A
ILE
75
A
SER
81
A
SER
84
1
B
ILE
72
B
ILE
75
B
SER
81
B
SER
84
1
A
LEU
83
A
LEU
86
A
LEU
101
A
LEU
104
1
B
LEU
83
B
LEU
86
B
LEU
101
B
LEU
104
1
A
HIS
103
A
HIS
106
A
ASP
233
A
ASP
236
1
B
HIS
103
B
HIS
106
B
ASP
233
B
ASP
236
1
A
VAL
235
A
VAL
238
A
LYS
366
A
LYS
369
1
B
VAL
235
B
VAL
238
B
LYS
366
B
LYS
369
1
C
G
48
C
G
1
C
C
66
C
C
19
4
D
G
48
D
G
1
D
C
66
D
C
19
4
TRMA_ECOLI
UNP
1
1
P23003
MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAA
SELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI
AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRIL
YISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK
3BT7
PDB
2
1
3BT7
GCUGUGUUCGAUCCACAGC
1
366
3BT7
1
366
P23003
A
1
4
369
1
366
3BT7
1
366
P23003
B
1
4
369
48
66
3BT7
48
66
3BT7
C
2
1
19
48
66
3BT7
48
66
3BT7
D
2
1
19
1
expression tag
GLY
-2
3BT7
A
P23003
UNP
1
1
expression tag
SER
-1
3BT7
A
P23003
UNP
2
1
expression tag
HIS
0
3BT7
A
P23003
UNP
3
1
GLU
engineered mutation
GLN
358
3BT7
A
P23003
UNP
358
361
2
expression tag
GLY
-2
3BT7
B
P23003
UNP
1
2
expression tag
SER
-1
3BT7
B
P23003
UNP
2
2
expression tag
HIS
0
3BT7
B
P23003
UNP
3
2
GLU
engineered mutation
GLN
358
3BT7
B
P23003
UNP
358
361
8
7
2
8
7
2
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLU
35
A
GLU
38
A
PHE
37
A
PHE
40
A
HIS
340
A
HIS
343
A
PHE
348
A
PHE
351
A
GLN
358
A
GLN
361
A
ALA
365
A
ALA
368
A
ARG
318
A
ARG
321
A
SER
323
A
SER
326
A
CYS
293
A
CYS
296
A
VAL
298
A
VAL
301
A
ASP
213
A
ASP
216
A
LEU
217
A
LEU
220
A
ARG
234
A
ARG
237
A
THR
238
A
THR
241
A
VAL
260
A
VAL
263
A
ILE
263
A
ILE
266
A
ARG
71
A
ARG
74
A
ARG
73
A
ARG
76
A
ASP
58
A
ASP
61
A
PHE
64
A
PHE
67
A
ARG
47
A
ARG
50
A
ASP
55
A
ASP
58
A
LEU
105
A
LEU
108
A
THR
112
A
THR
115
A
GLN
117
A
GLN
120
A
TYR
124
A
TYR
127
A
ASN
149
A
ASN
152
A
ALA
156
A
ALA
159
A
THR
159
A
THR
162
A
GLU
162
A
GLU
165
A
TYR
167
A
TYR
170
A
ARG
171
A
ARG
174
A
ILE
180
A
ILE
183
A
VAL
184
A
VAL
187
B
GLU
35
B
GLU
38
B
PHE
37
B
PHE
40
B
HIS
340
B
HIS
343
B
PHE
348
B
PHE
351
B
GLN
358
B
GLN
361
B
ALA
365
B
ALA
368
B
ARG
318
B
ARG
321
B
SER
323
B
SER
326
B
CYS
293
B
CYS
296
B
VAL
298
B
VAL
301
B
ASP
213
B
ASP
216
B
LEU
217
B
LEU
220
B
ARG
234
B
ARG
237
B
THR
238
B
THR
241
B
VAL
260
B
VAL
263
B
ILE
263
B
ILE
266
B
ARG
71
B
ARG
74
B
ARG
73
B
ARG
76
B
ASP
58
B
ASP
61
B
PHE
64
B
PHE
67
B
ARG
47
B
ARG
50
B
ASP
55
B
ASP
58
B
LEU
105
B
LEU
108
B
THR
112
B
THR
115
B
GLN
117
B
GLN
120
B
TYR
124
B
TYR
127
B
ASN
149
B
ASN
152
B
ALA
156
B
ALA
159
B
THR
159
B
THR
162
B
GLU
162
B
GLU
165
B
TYR
167
B
TYR
170
B
ARG
171
B
ARG
174
B
ILE
180
B
ILE
183
B
VAL
184
B
VAL
187
5
C 1 2 1