0.022665 0.000000 0.000000 0.000000 0.013565 0.000000 0.000000 0.000000 0.009852 0.00000 0.00000 0.00000 Huang, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90 90 90 44.12 73.72 101.50 C3 H7 N O2 89.093 y ALANINE L-peptide linking C32 H32 F3 N7 O2 603.637 2-methyl-N-{4-methyl-3-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)carbamoyl]phenyl}-3-(trifluoromethyl)benzamide non-polymer C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H Y 14 N C Y 15 N C Y 16 N C N 17 N N N 18 N C Y 19 N C Y 20 N C Y 21 N C Y 22 N C Y 23 N C Y 24 N C N 25 N C N 26 N F N 27 N F N 28 N F Y 29 N C Y 30 N C Y 31 N C N 32 N C Y 33 N N Y 34 N C Y 35 N C Y 36 N C Y 37 N N Y 38 N C N 39 N N N 40 N C N 41 N O N 42 N N N 43 N O N 44 N C Y 45 N C Y 46 N C Y 47 N C Y 48 N C Y 49 N C Y 50 N C N 51 N C N 52 N N N 53 N C N 54 N C N 55 N N N 56 N C N 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 S C N 92 N C N 93 N O N 94 N C N 95 N C N 96 N C N 97 N N N 98 N C N 99 N N N 100 N N N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N O N 124 N N N 125 N O N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 S C N 136 N C N 137 N O N 138 N C N 139 N C N 140 N O N 141 N O N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 R C N 152 N C N 153 N O N 154 N C N 155 N S N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 S C N 166 N C N 167 N O N 168 N C N 169 N C N 170 N C N 171 N O N 172 N N N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N O N 192 N O N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 N C N 205 N C N 206 N O N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C Y 218 N C Y 219 N N Y 220 N C Y 221 N C Y 222 N N N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N O N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 S C N 242 N C N 243 N C N 244 N C N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N C N 287 N C N 288 N C N 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N C N 312 N S N 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C N 371 N O N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 R C N 385 N O N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N N Y 406 N C Y 407 N C Y 408 N C Y 409 N C Y 410 N C N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C N 435 N O N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N N N 449 S C N 450 N C N 451 N O N 452 N C N 453 N C N 454 N C N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing Y 13 N doub Y 14 N sing Y 15 N sing N 16 N sing Y 17 N doub N 18 N sing N 19 N sing N 20 N doub Y 21 N doub Y 22 N sing Y 23 N sing Y 24 N doub Y 25 N sing Y 26 N doub N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing Y 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N doub Y 37 N sing Y 38 N sing Y 39 N doub N 40 N sing Y 41 N sing Y 42 N doub N 43 N sing N 44 N sing N 45 N doub N 46 N sing Y 47 N doub Y 48 N sing Y 49 N sing N 50 N sing Y 51 N doub Y 52 N sing Y 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing Y 220 N sing Y 221 N doub Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing Y 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub N 333 N sing Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub Y 402 N sing Y 403 N sing N 404 N sing Y 405 N sing Y 406 N doub N 407 N sing Y 408 N doub N 409 N sing Y 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing Y 425 N doub Y 426 N sing Y 427 N sing N 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 51 1681 1694 10.1021/jm7010996 18321037 Structure-guided design of aminopyrimidine amides as potent, selective inhibitors of lymphocyte specific kinase: synthesis, structure-activity relationships, and inhibition of in vivo T cell activation. 2008 10.2210/pdb3byu/pdb pdb_00003byu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 32057.672 Proto-oncogene tyrosine-protein kinase LCK 2.7.10.2 kinase domain 1 man polymer 603.637 2-methyl-N-{4-methyl-3-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)carbamoyl]phenyl}-3-(trifluoromethyl)benzamide 1 syn non-polymer 18.015 water 126 nat water p56-LCK, Lymphocyte cell-specific protein-tyrosine kinase, LSK, T cell-specific protein-tyrosine kinase no no QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFG LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFG LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample LCK 9606 Homo sapiens Insect Cell Baculovirus 1 2.57 52.22 VAPOR DIFFUSION, HANGING DROP 7.5 0.2 M Sodium Citrate, 20% (v/v) Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2008-09-16 1 1 2011-07-13 1 2 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2008-01-16 REL AM6 2-methyl-N-{4-methyl-3-[(2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-5-yl)carbamoyl]phenyl}-3-(trifluoromethyl)benzamide HOH water 1QPC PDB ENTRY 1QPC PDB experimental model AM6 1 2 AM6 AM6 1 A HOH 1 3 HOH HOH 502 A HOH 4 3 HOH HOH 503 A HOH 7 3 HOH HOH 504 A HOH 8 3 HOH HOH 505 A HOH 10 3 HOH HOH 506 A HOH 11 3 HOH HOH 507 A HOH 22 3 HOH HOH 508 A HOH 23 3 HOH HOH 509 A HOH 24 3 HOH HOH 510 A HOH 28 3 HOH HOH 511 A HOH 33 3 HOH HOH 512 A HOH 34 3 HOH HOH 513 A HOH 35 3 HOH HOH 514 A HOH 41 3 HOH HOH 515 A HOH 44 3 HOH HOH 516 A HOH 48 3 HOH HOH 517 A HOH 50 3 HOH HOH 518 A HOH 52 3 HOH HOH 519 A HOH 53 3 HOH HOH 520 A HOH 54 3 HOH HOH 521 A HOH 57 3 HOH HOH 522 A HOH 59 3 HOH HOH 523 A HOH 60 3 HOH HOH 524 A HOH 61 3 HOH HOH 525 A HOH 63 3 HOH HOH 526 A HOH 64 3 HOH HOH 527 A HOH 70 3 HOH HOH 528 A HOH 72 3 HOH HOH 529 A HOH 74 3 HOH HOH 530 A HOH 77 3 HOH HOH 531 A HOH 78 3 HOH HOH 532 A HOH 80 3 HOH HOH 533 A HOH 84 3 HOH HOH 534 A HOH 85 3 HOH HOH 535 A HOH 89 3 HOH HOH 536 A HOH 90 3 HOH HOH 537 A HOH 91 3 HOH HOH 538 A HOH 92 3 HOH HOH 539 A HOH 93 3 HOH HOH 540 A HOH 94 3 HOH HOH 541 A HOH 95 3 HOH HOH 542 A HOH 96 3 HOH HOH 543 A HOH 97 3 HOH HOH 544 A HOH 101 3 HOH HOH 545 A HOH 102 3 HOH HOH 546 A HOH 103 3 HOH HOH 547 A HOH 104 3 HOH HOH 548 A HOH 105 3 HOH HOH 549 A HOH 107 3 HOH HOH 550 A HOH 108 3 HOH HOH 551 A HOH 109 3 HOH HOH 552 A HOH 110 3 HOH HOH 553 A HOH 112 3 HOH HOH 554 A HOH 113 3 HOH HOH 555 A HOH 115 3 HOH HOH 556 A HOH 117 3 HOH HOH 557 A HOH 118 3 HOH HOH 558 A HOH 119 3 HOH HOH 559 A HOH 120 3 HOH HOH 560 A HOH 122 3 HOH HOH 561 A HOH 123 3 HOH HOH 562 A HOH 124 3 HOH HOH 563 A HOH 125 3 HOH HOH 564 A HOH 129 3 HOH HOH 565 A HOH 130 3 HOH HOH 566 A HOH 131 3 HOH HOH 567 A HOH 132 3 HOH HOH 568 A HOH 133 3 HOH HOH 569 A HOH 135 3 HOH HOH 570 A HOH 136 3 HOH HOH 571 A HOH 138 3 HOH HOH 572 A HOH 139 3 HOH HOH 573 A HOH 141 3 HOH HOH 574 A HOH 142 3 HOH HOH 575 A HOH 144 3 HOH HOH 576 A HOH 145 3 HOH HOH 577 A HOH 146 3 HOH HOH 578 A HOH 147 3 HOH HOH 579 A HOH 150 3 HOH HOH 580 A HOH 151 3 HOH HOH 581 A HOH 153 3 HOH HOH 582 A HOH 155 3 HOH HOH 583 A HOH 158 3 HOH HOH 584 A HOH 159 3 HOH HOH 585 A HOH 160 3 HOH HOH 586 A HOH 163 3 HOH HOH 587 A HOH 164 3 HOH HOH 588 A HOH 165 3 HOH HOH 589 A HOH 166 3 HOH HOH 590 A HOH 167 3 HOH HOH 591 A HOH 168 3 HOH HOH 592 A HOH 169 3 HOH HOH 593 A HOH 170 3 HOH HOH 594 A HOH 171 3 HOH HOH 595 A HOH 172 3 HOH HOH 596 A HOH 174 3 HOH HOH 597 A HOH 175 3 HOH HOH 598 A HOH 176 3 HOH HOH 599 A HOH 177 3 HOH HOH 600 A HOH 179 3 HOH HOH 601 A HOH 180 3 HOH HOH 602 A HOH 181 3 HOH HOH 603 A HOH 182 3 HOH HOH 604 A HOH 183 3 HOH HOH 605 A HOH 185 3 HOH HOH 606 A HOH 186 3 HOH HOH 607 A HOH 187 3 HOH HOH 608 A HOH 188 3 HOH HOH 609 A HOH 189 3 HOH HOH 610 A HOH 190 3 HOH HOH 611 A HOH 191 3 HOH HOH 612 A HOH 192 3 HOH HOH 613 A HOH 194 3 HOH HOH 614 A HOH 195 3 HOH HOH 615 A HOH 196 3 HOH HOH 616 A HOH 197 3 HOH HOH 617 A HOH 198 3 HOH HOH 618 A HOH 199 3 HOH HOH 619 A HOH 200 3 HOH HOH 620 A HOH 201 3 HOH HOH 621 A HOH 202 3 HOH HOH 622 A HOH 203 3 HOH HOH 623 A HOH 204 3 HOH HOH 624 A HOH 205 3 HOH HOH 625 A HOH 213 3 HOH HOH 626 A HOH 216 3 HOH HOH 627 A n 1 225 A n 2 226 A n 3 227 A n 4 228 A n 5 229 A n 6 230 A LYS 231 n 7 LYS 231 A PRO 232 n 8 PRO 232 A TRP 233 n 9 TRP 233 A TRP 234 n 10 TRP 234 A GLU 235 n 11 GLU 235 A ASP 236 n 12 ASP 236 A GLU 237 n 13 GLU 237 A TRP 238 n 14 TRP 238 A GLU 239 n 15 GLU 239 A VAL 240 n 16 VAL 240 A PRO 241 n 17 PRO 241 A ARG 242 n 18 ARG 242 A GLU 243 n 19 GLU 243 A THR 244 n 20 THR 244 A LEU 245 n 21 LEU 245 A LYS 246 n 22 LYS 246 A LEU 247 n 23 LEU 247 A VAL 248 n 24 VAL 248 A GLU 249 n 25 GLU 249 A ARG 250 n 26 ARG 250 A LEU 251 n 27 LEU 251 A GLY 252 n 28 GLY 252 A ALA 253 n 29 ALA 253 A GLY 254 n 30 GLY 254 A GLN 255 n 31 GLN 255 A PHE 256 n 32 PHE 256 A GLY 257 n 33 GLY 257 A GLU 258 n 34 GLU 258 A VAL 259 n 35 VAL 259 A TRP 260 n 36 TRP 260 A MET 261 n 37 MET 261 A GLY 262 n 38 GLY 262 A TYR 263 n 39 TYR 263 A TYR 264 n 40 TYR 264 A ASN 265 n 41 ASN 265 A GLY 266 n 42 GLY 266 A HIS 267 n 43 HIS 267 A THR 268 n 44 THR 268 A LYS 269 n 45 LYS 269 A VAL 270 n 46 VAL 270 A ALA 271 n 47 ALA 271 A VAL 272 n 48 VAL 272 A LYS 273 n 49 LYS 273 A SER 274 n 50 SER 274 A LEU 275 n 51 LEU 275 A LYS 276 n 52 LYS 276 A GLN 277 n 53 GLN 277 A GLY 278 n 54 GLY 278 A SER 279 n 55 SER 279 A MET 280 n 56 MET 280 A SER 281 n 57 SER 281 A PRO 282 n 58 PRO 282 A ASP 283 n 59 ASP 283 A ALA 284 n 60 ALA 284 A PHE 285 n 61 PHE 285 A LEU 286 n 62 LEU 286 A ALA 287 n 63 ALA 287 A GLU 288 n 64 GLU 288 A ALA 289 n 65 ALA 289 A ASN 290 n 66 ASN 290 A LEU 291 n 67 LEU 291 A MET 292 n 68 MET 292 A LYS 293 n 69 LYS 293 A GLN 294 n 70 GLN 294 A LEU 295 n 71 LEU 295 A GLN 296 n 72 GLN 296 A HIS 297 n 73 HIS 297 A GLN 298 n 74 GLN 298 A ARG 299 n 75 ARG 299 A LEU 300 n 76 LEU 300 A VAL 301 n 77 VAL 301 A ARG 302 n 78 ARG 302 A LEU 303 n 79 LEU 303 A TYR 304 n 80 TYR 304 A ALA 305 n 81 ALA 305 A VAL 306 n 82 VAL 306 A VAL 307 n 83 VAL 307 A THR 308 n 84 THR 308 A ALA 309 n 85 GLN 309 A GLU 310 n 86 GLU 310 A PRO 311 n 87 PRO 311 A ILE 312 n 88 ILE 312 A TYR 313 n 89 TYR 313 A ILE 314 n 90 ILE 314 A ILE 315 n 91 ILE 315 A THR 316 n 92 THR 316 A GLU 317 n 93 GLU 317 A TYR 318 n 94 TYR 318 A MET 319 n 95 MET 319 A GLU 320 n 96 GLU 320 A ASN 321 n 97 ASN 321 A GLY 322 n 98 GLY 322 A SER 323 n 99 SER 323 A LEU 324 n 100 LEU 324 A VAL 325 n 101 VAL 325 A ASP 326 n 102 ASP 326 A PHE 327 n 103 PHE 327 A LEU 328 n 104 LEU 328 A LYS 329 n 105 LYS 329 A THR 330 n 106 THR 330 A PRO 331 n 107 PRO 331 A SER 332 n 108 SER 332 A GLY 333 n 109 GLY 333 A ILE 334 n 110 ILE 334 A LYS 335 n 111 LYS 335 A LEU 336 n 112 LEU 336 A THR 337 n 113 THR 337 A ILE 338 n 114 ILE 338 A ASN 339 n 115 ASN 339 A LYS 340 n 116 LYS 340 A LEU 341 n 117 LEU 341 A LEU 342 n 118 LEU 342 A ASP 343 n 119 ASP 343 A MET 344 n 120 MET 344 A ALA 345 n 121 ALA 345 A ALA 346 n 122 ALA 346 A GLN 347 n 123 GLN 347 A ILE 348 n 124 ILE 348 A ALA 349 n 125 ALA 349 A GLU 350 n 126 GLU 350 A GLY 351 n 127 GLY 351 A MET 352 n 128 MET 352 A ALA 353 n 129 ALA 353 A PHE 354 n 130 PHE 354 A ILE 355 n 131 ILE 355 A GLU 356 n 132 GLU 356 A GLU 357 n 133 GLU 357 A ARG 358 n 134 ARG 358 A ASN 359 n 135 ASN 359 A TYR 360 n 136 TYR 360 A ILE 361 n 137 ILE 361 A HIS 362 n 138 HIS 362 A ARG 363 n 139 ARG 363 A ASP 364 n 140 ASP 364 A LEU 365 n 141 LEU 365 A ARG 366 n 142 ARG 366 A ALA 367 n 143 ALA 367 A ALA 368 n 144 ALA 368 A ASN 369 n 145 ASN 369 A ILE 370 n 146 ILE 370 A LEU 371 n 147 LEU 371 A VAL 372 n 148 VAL 372 A SER 373 n 149 SER 373 A ASP 374 n 150 ASP 374 A THR 375 n 151 THR 375 A LEU 376 n 152 LEU 376 A SER 377 n 153 SER 377 A CYS 378 n 154 CYS 378 A LYS 379 n 155 LYS 379 A ILE 380 n 156 ILE 380 A ALA 381 n 157 ALA 381 A ASP 382 n 158 ASP 382 A PHE 383 n 159 PHE 383 A GLY 384 n 160 GLY 384 A LEU 385 n 161 LEU 385 A n 162 386 A n 163 387 A n 164 388 A n 165 389 A n 166 390 A n 167 391 A n 168 392 A n 169 393 A n 170 394 A n 171 395 A n 172 396 A n 173 397 A n 174 398 A n 175 399 A n 176 400 A ALA 401 n 177 LYS 401 A ALA 402 n 178 PHE 402 A PRO 403 n 179 PRO 403 A ILE 404 n 180 ILE 404 A LYS 405 n 181 LYS 405 A TRP 406 n 182 TRP 406 A THR 407 n 183 THR 407 A ALA 408 n 184 ALA 408 A PRO 409 n 185 PRO 409 A GLU 410 n 186 GLU 410 A ALA 411 n 187 ALA 411 A ILE 412 n 188 ILE 412 A ASN 413 n 189 ASN 413 A TYR 414 n 190 TYR 414 A GLY 415 n 191 GLY 415 A THR 416 n 192 THR 416 A PHE 417 n 193 PHE 417 A THR 418 n 194 THR 418 A ILE 419 n 195 ILE 419 A LYS 420 n 196 LYS 420 A SER 421 n 197 SER 421 A ASP 422 n 198 ASP 422 A VAL 423 n 199 VAL 423 A TRP 424 n 200 TRP 424 A SER 425 n 201 SER 425 A PHE 426 n 202 PHE 426 A GLY 427 n 203 GLY 427 A ILE 428 n 204 ILE 428 A LEU 429 n 205 LEU 429 A LEU 430 n 206 LEU 430 A THR 431 n 207 THR 431 A GLU 432 n 208 GLU 432 A ILE 433 n 209 ILE 433 A VAL 434 n 210 VAL 434 A THR 435 n 211 THR 435 A HIS 436 n 212 HIS 436 A GLY 437 n 213 GLY 437 A ARG 438 n 214 ARG 438 A ILE 439 n 215 ILE 439 A PRO 440 n 216 PRO 440 A TYR 441 n 217 TYR 441 A PRO 442 n 218 PRO 442 A GLY 443 n 219 GLY 443 A MET 444 n 220 MET 444 A THR 445 n 221 THR 445 A ASN 446 n 222 ASN 446 A PRO 447 n 223 PRO 447 A GLU 448 n 224 GLU 448 A VAL 449 n 225 VAL 449 A ILE 450 n 226 ILE 450 A ALA 451 n 227 GLN 451 A ASN 452 n 228 ASN 452 A LEU 453 n 229 LEU 453 A GLU 454 n 230 GLU 454 A ARG 455 n 231 ARG 455 A GLY 456 n 232 GLY 456 A TYR 457 n 233 TYR 457 A ARG 458 n 234 ARG 458 A MET 459 n 235 MET 459 A VAL 460 n 236 VAL 460 A ARG 461 n 237 ARG 461 A PRO 462 n 238 PRO 462 A ASP 463 n 239 ASP 463 A ASN 464 n 240 ASN 464 A CYS 465 n 241 CYS 465 A PRO 466 n 242 PRO 466 A GLU 467 n 243 GLU 467 A GLU 468 n 244 GLU 468 A LEU 469 n 245 LEU 469 A TYR 470 n 246 TYR 470 A GLN 471 n 247 GLN 471 A LEU 472 n 248 LEU 472 A MET 473 n 249 MET 473 A ARG 474 n 250 ARG 474 A LEU 475 n 251 LEU 475 A CYS 476 n 252 CYS 476 A TRP 477 n 253 TRP 477 A LYS 478 n 254 LYS 478 A GLU 479 n 255 GLU 479 A ARG 480 n 256 ARG 480 A PRO 481 n 257 PRO 481 A GLU 482 n 258 GLU 482 A ASP 483 n 259 ASP 483 A ARG 484 n 260 ARG 484 A PRO 485 n 261 PRO 485 A THR 486 n 262 THR 486 A PHE 487 n 263 PHE 487 A ASP 488 n 264 ASP 488 A TYR 489 n 265 TYR 489 A LEU 490 n 266 LEU 490 A ARG 491 n 267 ARG 491 A SER 492 n 268 SER 492 A VAL 493 n 269 VAL 493 A LEU 494 n 270 LEU 494 A GLU 495 n 271 GLU 495 A ASP 496 n 272 ASP 496 A PHE 497 n 273 PHE 497 A PHE 498 n 274 PHE 498 A THR 499 n 275 THR 499 A ALA 500 n 276 ALA 500 A THR 501 n 277 THR 501 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 251 A N LEU 27 A O VAL 259 A O VAL 35 A N GLY 262 A N GLY 38 A O VAL 270 A O VAL 46 A N LYS 273 A N LYS 49 A O ILE 314 A O ILE 90 A O ILE 315 A O ILE 91 A N TYR 304 A N TYR 80 A N LEU 371 A N LEU 147 A O LYS 379 A O LYS 155 1 A CG GLN 309 A CG GLN 85 1 Y 1 A CD GLN 309 A CD GLN 85 1 Y 1 A OE1 GLN 309 A OE1 GLN 85 1 Y 1 A NE2 GLN 309 A NE2 GLN 85 1 Y 1 A CG LYS 401 A CG LYS 177 1 Y 1 A CD LYS 401 A CD LYS 177 1 Y 1 A CE LYS 401 A CE LYS 177 1 Y 1 A NZ LYS 401 A NZ LYS 177 1 Y 1 A CG PHE 402 A CG PHE 178 1 Y 1 A CD1 PHE 402 A CD1 PHE 178 1 Y 1 A CD2 PHE 402 A CD2 PHE 178 1 Y 1 A CE1 PHE 402 A CE1 PHE 178 1 Y 1 A CE2 PHE 402 A CE2 PHE 178 1 Y 1 A CZ PHE 402 A CZ PHE 178 1 Y 1 A CG GLN 451 A CG GLN 227 1 Y 1 A CD GLN 451 A CD GLN 227 1 Y 1 A OE1 GLN 451 A OE1 GLN 227 1 Y 1 A NE2 GLN 451 A NE2 GLN 227 1 Y 1 A GLN 225 A GLN 1 1 Y 1 A THR 226 A THR 2 1 Y 1 A GLN 227 A GLN 3 1 Y 1 A LYS 228 A LYS 4 1 Y 1 A PRO 229 A PRO 5 1 Y 1 A GLN 230 A GLN 6 1 Y 1 A ALA 386 A ALA 162 1 Y 1 A ARG 387 A ARG 163 1 Y 1 A LEU 388 A LEU 164 1 Y 1 A ILE 389 A ILE 165 1 Y 1 A GLU 390 A GLU 166 1 Y 1 A ASP 391 A ASP 167 1 Y 1 A ASN 392 A ASN 168 1 Y 1 A GLU 393 A GLU 169 1 Y 1 A TYR 394 A TYR 170 1 Y 1 A THR 395 A THR 171 1 Y 1 A ALA 396 A ALA 172 1 Y 1 A ARG 397 A ARG 173 1 Y 1 A GLU 398 A GLU 174 1 Y 1 A GLY 399 A GLY 175 1 Y 1 A ALA 400 A ALA 176 1 Y 1 A HOH 591 C HOH 0 N 1 12.67 1.50 119.30 131.97 A A A C N CA PHE PRO PRO 402 403 403 Y 1 A ALA 253 -116.78 -166.79 1 A GLN 255 -44.28 -73.73 1 A ALA 305 -173.52 -176.01 1 A ARG 363 76.26 -12.38 1 A ASP 364 -147.55 44.62 1 A ASP 382 -160.75 101.50 1 A PRO 403 -31.76 27.46 1 A ILE 404 61.22 -78.71 1 A LYS 405 -39.72 -28.73 0.278 0.232 2.30 30.0 755 15308 14892 RANDOM 1 0.00 MOLECULAR REPLACEMENT PDB ENTRY 1QPC Engh & Huber 2.30 30.0 126 2239 44 0 2069 0.013 1.75 2.30 30.0 3BYU 15308 14892 -3.0 0.065 1 14.3 3.0 97.6 0.204 2.30 2.38 4.5 84.3 data collection CrystalClear phasing AMoRE refinement CNS data reduction DENZO data scaling SCALEPACK co-crystal structure of Lck and aminopyrimidine reverse amide 23 1 N N 2 N N 3 N N A PRO 241 A PRO 17 HELX_P A GLU 243 A GLU 19 5 1 3 A SER 281 A SER 57 HELX_P A GLN 294 A GLN 70 1 2 14 A SER 323 A SER 99 HELX_P A LEU 328 A LEU 104 1 3 6 A THR 330 A THR 106 HELX_P A LYS 335 A LYS 111 1 4 6 A THR 337 A THR 113 HELX_P A ARG 358 A ARG 134 1 5 22 A ARG 366 A ARG 142 HELX_P A ALA 368 A ALA 144 5 6 3 A ALA 408 A ALA 184 HELX_P A GLY 415 A GLY 191 1 7 8 A THR 418 A THR 194 HELX_P A THR 435 A THR 211 1 8 18 A THR 445 A THR 221 HELX_P A GLY 456 A GLY 232 1 9 12 A PRO 466 A PRO 242 HELX_P A TRP 477 A TRP 253 1 10 12 A ARG 480 A ARG 256 HELX_P A ARG 484 A ARG 260 5 11 5 A THR 486 A THR 262 HELX_P A THR 499 A THR 275 1 12 14 TRANSFERASE Lck, Kinase domain, Alternative splicing, ATP-binding, Chromosomal rearrangement, Cytoplasm, Disease mutation, Host-virus interaction, Lipoprotein, Membrane, Myristate, Nucleotide-binding, Palmitate, Phosphoprotein, Proto-oncogene, SH2 domain, SH3 domain, Transferase, Tyrosine-protein kinase A GLU 310 A GLU 86 1 A PRO 311 A PRO 87 0.37 LCK_HUMAN UNP 1 225 P06239 QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFG LARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDN CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 225 501 3BYU 225 501 P06239 A 1 1 277 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 245 A LEU 21 A GLY 252 A GLY 28 A GLY 257 A GLY 33 A TYR 264 A TYR 40 A THR 268 A THR 44 A LEU 275 A LEU 51 A TYR 313 A TYR 89 A GLU 317 A GLU 93 A LEU 303 A LEU 79 A VAL 307 A VAL 83 A ILE 370 A ILE 146 A VAL 372 A VAL 148 A CYS 378 A CYS 154 A ILE 380 A ILE 156 BINDING SITE FOR RESIDUE AM6 A 1 A AM6 1 Software 17 A ALA 271 A ALA 47 17 1_555 A LYS 273 A LYS 49 17 1_555 A GLU 288 A GLU 64 17 1_555 A MET 292 A MET 68 17 1_555 A LEU 295 A LEU 71 17 1_555 A THR 316 A THR 92 17 1_555 A GLU 317 A GLU 93 17 1_555 A TYR 318 A TYR 94 17 1_555 A MET 319 A MET 95 17 1_555 A GLY 322 A GLY 98 17 1_555 A TYR 360 A TYR 136 17 1_555 A LEU 371 A LEU 147 17 1_555 A ILE 380 A ILE 156 17 1_555 A ALA 381 A ALA 157 17 1_555 A ASP 382 A ASP 158 17 1_555 A PHE 383 A PHE 159 17 1_555 A HOH 553 C HOH 17 1_555 19 P 21 21 21