0.017027
0.000000
0.006810
0.000000
0.021891
0.000000
0.000000
0.000000
0.017031
0.00000
0.00000
0.00000
Niefind, K.
Raaf, J.
Issinger, O.-G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
111.80
90.00
58.730
45.680
63.240
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C15 H10 O5
270.237
3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE
EMODIN
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
Y
89
N
C
N
90
N
O
Y
91
N
C
Y
92
N
C
N
93
N
O
Y
94
N
C
Y
95
N
C
N
96
N
C
N
97
N
O
Y
98
N
C
Y
99
N
C
Y
100
N
C
N
101
N
C
Y
102
N
C
Y
103
N
C
N
104
N
O
Y
105
N
C
N
106
N
C
N
107
N
O
Y
108
N
C
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
S
C
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
Y
173
N
C
Y
174
N
N
Y
175
N
C
Y
176
N
C
Y
177
N
N
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
S
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
N
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
S
N
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
R
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
doub
Y
85
N
sing
N
86
N
sing
Y
87
N
sing
N
88
N
sing
N
89
N
sing
Y
90
N
doub
N
91
N
sing
Y
92
N
sing
N
93
N
sing
N
94
N
sing
Y
95
N
doub
N
96
N
doub
N
97
N
sing
Y
98
N
doub
Y
99
N
sing
Y
100
N
sing
N
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
Y
172
N
sing
Y
173
N
doub
Y
174
N
doub
N
175
N
sing
Y
176
N
sing
N
177
N
sing
Y
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
Y
280
N
doub
Y
281
N
sing
Y
282
N
sing
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
377
1
8
10.1016/j.jmb.2008.01.008
18242640
The Catalytic Subunit of Human Protein Kinase CK2 Structurally Deviates from Its Maize Homologue in Complex with the Nucleotide Competitive Inhibitor Emodin
2008
10.2210/pdb3c13/pdb
pdb_00003c13
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-02-10
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9537
1.0
X12
EMBL/DESY, HAMBURG
0.9537
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X12
40066.742
Casein kinase II subunit alpha
2.7.11.1
RESIDUES 1-335
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
270.237
3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE
1
syn
non-polymer
18.015
water
300
nat
water
CK II
no
no
MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR
EIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH
NVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD
QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME
HPYFYTVVKDQARMG
MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR
EIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH
NVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD
QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME
HPYFYTVVKDQARMG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
csnk2a1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(de3)
plasmid
pT7-7
1
1.97
37.43
VAPOR DIFFUSION, SITTING DROP
5.6
Protein stock solution: 10mg/ml protein in 500mM NaCl, 25mM Tris/HCl, pH 8.5
Emodin stock solution: 10mM in water
Protein/emodin mixture: equal volumes of protein and emodin stock solutions were mixed and equillibrated for 30 min prior to crystallization
Reservoir: 30% PEG4000, 0.2M ammonium acetate, 0.1M sodium citrate, pH 5.6
Crystallization drop: 2 microliters protein/emodin mixture plus 1 microliter reservoir solution, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-02-12
1
1
2011-07-13
1
2
2017-10-25
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein and inhibitor and higher pH-value and better resolution
The same protein in complex with a non-catalytic subunit
The same inhibitor (emodin) with the homologous enyzme from Zea mays
The same protein in complex with 5,6-dichloro benzimidazole-beta-D- ribofuranoside
The same protein in complex with adenylyl imidodiphosphate (AMPPNP) and sulfate
The same protein in complex with adenylyl imidodiphosphate (AMPPNP)
The homologous enzyme from Zea mays in complex with adenylyl imidodiphosphate (AMPPNP)
RCSB
Y
PDBJ
2008-01-22
REL
REL
CL
CHLORIDE ION
EMO
3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE
HOH
water
3BQC
PDB entry 3BQC
PDB
experimental model
CL
1
2
CL
CL
336
A
CL
2
2
CL
CL
337
A
EMO
400
3
EMO
EMO
400
A
HOH
2
4
HOH
HOH
401
A
HOH
3
4
HOH
HOH
402
A
HOH
4
4
HOH
HOH
403
A
HOH
5
4
HOH
HOH
404
A
HOH
6
4
HOH
HOH
405
A
HOH
7
4
HOH
HOH
406
A
HOH
8
4
HOH
HOH
407
A
HOH
9
4
HOH
HOH
408
A
HOH
10
4
HOH
HOH
409
A
HOH
11
4
HOH
HOH
410
A
HOH
12
4
HOH
HOH
411
A
HOH
13
4
HOH
HOH
412
A
HOH
14
4
HOH
HOH
413
A
HOH
15
4
HOH
HOH
414
A
HOH
16
4
HOH
HOH
415
A
HOH
17
4
HOH
HOH
416
A
HOH
18
4
HOH
HOH
417
A
HOH
19
4
HOH
HOH
418
A
HOH
20
4
HOH
HOH
419
A
HOH
21
4
HOH
HOH
420
A
HOH
22
4
HOH
HOH
421
A
HOH
23
4
HOH
HOH
422
A
HOH
24
4
HOH
HOH
423
A
HOH
25
4
HOH
HOH
424
A
HOH
26
4
HOH
HOH
425
A
HOH
27
4
HOH
HOH
426
A
HOH
28
4
HOH
HOH
427
A
HOH
29
4
HOH
HOH
428
A
HOH
30
4
HOH
HOH
429
A
HOH
31
4
HOH
HOH
430
A
HOH
32
4
HOH
HOH
431
A
HOH
33
4
HOH
HOH
432
A
HOH
34
4
HOH
HOH
433
A
HOH
35
4
HOH
HOH
434
A
HOH
36
4
HOH
HOH
435
A
HOH
37
4
HOH
HOH
436
A
HOH
38
4
HOH
HOH
437
A
HOH
39
4
HOH
HOH
438
A
HOH
40
4
HOH
HOH
439
A
HOH
41
4
HOH
HOH
440
A
HOH
42
4
HOH
HOH
441
A
HOH
43
4
HOH
HOH
442
A
HOH
44
4
HOH
HOH
443
A
HOH
45
4
HOH
HOH
444
A
HOH
46
4
HOH
HOH
445
A
HOH
47
4
HOH
HOH
446
A
HOH
48
4
HOH
HOH
447
A
HOH
49
4
HOH
HOH
448
A
HOH
50
4
HOH
HOH
449
A
HOH
51
4
HOH
HOH
450
A
HOH
52
4
HOH
HOH
451
A
HOH
53
4
HOH
HOH
452
A
HOH
54
4
HOH
HOH
453
A
HOH
55
4
HOH
HOH
454
A
HOH
56
4
HOH
HOH
455
A
HOH
57
4
HOH
HOH
456
A
HOH
58
4
HOH
HOH
457
A
HOH
60
4
HOH
HOH
458
A
HOH
61
4
HOH
HOH
459
A
HOH
62
4
HOH
HOH
460
A
HOH
63
4
HOH
HOH
461
A
HOH
64
4
HOH
HOH
462
A
HOH
65
4
HOH
HOH
463
A
HOH
66
4
HOH
HOH
464
A
HOH
67
4
HOH
HOH
465
A
HOH
68
4
HOH
HOH
466
A
HOH
69
4
HOH
HOH
467
A
HOH
70
4
HOH
HOH
468
A
HOH
71
4
HOH
HOH
469
A
HOH
72
4
HOH
HOH
470
A
HOH
73
4
HOH
HOH
471
A
HOH
74
4
HOH
HOH
472
A
HOH
75
4
HOH
HOH
473
A
HOH
76
4
HOH
HOH
474
A
HOH
77
4
HOH
HOH
475
A
HOH
78
4
HOH
HOH
476
A
HOH
79
4
HOH
HOH
477
A
HOH
80
4
HOH
HOH
478
A
HOH
81
4
HOH
HOH
479
A
HOH
82
4
HOH
HOH
480
A
HOH
83
4
HOH
HOH
481
A
HOH
84
4
HOH
HOH
482
A
HOH
85
4
HOH
HOH
483
A
HOH
86
4
HOH
HOH
484
A
HOH
87
4
HOH
HOH
485
A
HOH
88
4
HOH
HOH
486
A
HOH
89
4
HOH
HOH
487
A
HOH
90
4
HOH
HOH
488
A
HOH
91
4
HOH
HOH
489
A
HOH
92
4
HOH
HOH
490
A
HOH
93
4
HOH
HOH
491
A
HOH
94
4
HOH
HOH
492
A
HOH
95
4
HOH
HOH
493
A
HOH
96
4
HOH
HOH
494
A
HOH
97
4
HOH
HOH
495
A
HOH
98
4
HOH
HOH
496
A
HOH
99
4
HOH
HOH
497
A
HOH
100
4
HOH
HOH
498
A
HOH
101
4
HOH
HOH
499
A
HOH
102
4
HOH
HOH
500
A
HOH
103
4
HOH
HOH
501
A
HOH
104
4
HOH
HOH
502
A
HOH
105
4
HOH
HOH
503
A
HOH
106
4
HOH
HOH
504
A
HOH
107
4
HOH
HOH
505
A
HOH
108
4
HOH
HOH
506
A
HOH
109
4
HOH
HOH
507
A
HOH
110
4
HOH
HOH
508
A
HOH
111
4
HOH
HOH
509
A
HOH
112
4
HOH
HOH
510
A
HOH
113
4
HOH
HOH
511
A
HOH
114
4
HOH
HOH
512
A
HOH
115
4
HOH
HOH
513
A
HOH
116
4
HOH
HOH
514
A
HOH
117
4
HOH
HOH
515
A
HOH
118
4
HOH
HOH
516
A
HOH
119
4
HOH
HOH
517
A
HOH
120
4
HOH
HOH
518
A
HOH
121
4
HOH
HOH
519
A
HOH
122
4
HOH
HOH
520
A
HOH
123
4
HOH
HOH
521
A
HOH
124
4
HOH
HOH
522
A
HOH
125
4
HOH
HOH
523
A
HOH
126
4
HOH
HOH
524
A
HOH
127
4
HOH
HOH
525
A
HOH
128
4
HOH
HOH
526
A
HOH
129
4
HOH
HOH
527
A
HOH
130
4
HOH
HOH
528
A
HOH
131
4
HOH
HOH
529
A
HOH
132
4
HOH
HOH
530
A
HOH
133
4
HOH
HOH
531
A
HOH
134
4
HOH
HOH
532
A
HOH
135
4
HOH
HOH
533
A
HOH
136
4
HOH
HOH
534
A
HOH
137
4
HOH
HOH
535
A
HOH
138
4
HOH
HOH
536
A
HOH
139
4
HOH
HOH
537
A
HOH
140
4
HOH
HOH
538
A
HOH
141
4
HOH
HOH
539
A
HOH
142
4
HOH
HOH
540
A
HOH
143
4
HOH
HOH
541
A
HOH
144
4
HOH
HOH
542
A
HOH
145
4
HOH
HOH
543
A
HOH
146
4
HOH
HOH
544
A
HOH
147
4
HOH
HOH
545
A
HOH
148
4
HOH
HOH
546
A
HOH
149
4
HOH
HOH
547
A
HOH
150
4
HOH
HOH
548
A
HOH
151
4
HOH
HOH
549
A
HOH
152
4
HOH
HOH
550
A
HOH
153
4
HOH
HOH
551
A
HOH
154
4
HOH
HOH
552
A
HOH
155
4
HOH
HOH
553
A
HOH
156
4
HOH
HOH
554
A
HOH
157
4
HOH
HOH
555
A
HOH
158
4
HOH
HOH
556
A
HOH
159
4
HOH
HOH
557
A
HOH
160
4
HOH
HOH
558
A
HOH
161
4
HOH
HOH
559
A
HOH
162
4
HOH
HOH
560
A
HOH
163
4
HOH
HOH
561
A
HOH
164
4
HOH
HOH
562
A
HOH
165
4
HOH
HOH
563
A
HOH
166
4
HOH
HOH
564
A
HOH
167
4
HOH
HOH
565
A
HOH
168
4
HOH
HOH
566
A
HOH
169
4
HOH
HOH
567
A
HOH
170
4
HOH
HOH
568
A
HOH
171
4
HOH
HOH
569
A
HOH
172
4
HOH
HOH
570
A
HOH
173
4
HOH
HOH
571
A
HOH
174
4
HOH
HOH
572
A
HOH
175
4
HOH
HOH
573
A
HOH
176
4
HOH
HOH
574
A
HOH
177
4
HOH
HOH
575
A
HOH
178
4
HOH
HOH
576
A
HOH
179
4
HOH
HOH
577
A
HOH
180
4
HOH
HOH
578
A
HOH
181
4
HOH
HOH
579
A
HOH
182
4
HOH
HOH
580
A
HOH
183
4
HOH
HOH
581
A
HOH
184
4
HOH
HOH
582
A
HOH
185
4
HOH
HOH
583
A
HOH
186
4
HOH
HOH
584
A
HOH
187
4
HOH
HOH
585
A
HOH
188
4
HOH
HOH
586
A
HOH
189
4
HOH
HOH
587
A
HOH
190
4
HOH
HOH
588
A
HOH
191
4
HOH
HOH
589
A
HOH
192
4
HOH
HOH
590
A
HOH
193
4
HOH
HOH
591
A
HOH
194
4
HOH
HOH
592
A
HOH
195
4
HOH
HOH
593
A
HOH
196
4
HOH
HOH
594
A
HOH
197
4
HOH
HOH
595
A
HOH
198
4
HOH
HOH
596
A
HOH
199
4
HOH
HOH
597
A
HOH
200
4
HOH
HOH
598
A
HOH
201
4
HOH
HOH
599
A
HOH
202
4
HOH
HOH
600
A
HOH
203
4
HOH
HOH
601
A
HOH
204
4
HOH
HOH
602
A
HOH
205
4
HOH
HOH
603
A
HOH
206
4
HOH
HOH
604
A
HOH
207
4
HOH
HOH
605
A
HOH
208
4
HOH
HOH
606
A
HOH
209
4
HOH
HOH
607
A
HOH
210
4
HOH
HOH
608
A
HOH
211
4
HOH
HOH
609
A
HOH
212
4
HOH
HOH
610
A
HOH
213
4
HOH
HOH
611
A
HOH
214
4
HOH
HOH
612
A
HOH
215
4
HOH
HOH
613
A
HOH
216
4
HOH
HOH
614
A
HOH
217
4
HOH
HOH
615
A
HOH
218
4
HOH
HOH
616
A
HOH
219
4
HOH
HOH
617
A
HOH
220
4
HOH
HOH
618
A
HOH
221
4
HOH
HOH
619
A
HOH
222
4
HOH
HOH
620
A
HOH
223
4
HOH
HOH
621
A
HOH
224
4
HOH
HOH
622
A
HOH
225
4
HOH
HOH
623
A
HOH
226
4
HOH
HOH
624
A
HOH
227
4
HOH
HOH
625
A
HOH
228
4
HOH
HOH
626
A
HOH
229
4
HOH
HOH
627
A
HOH
230
4
HOH
HOH
628
A
HOH
231
4
HOH
HOH
629
A
HOH
232
4
HOH
HOH
630
A
HOH
233
4
HOH
HOH
631
A
HOH
234
4
HOH
HOH
632
A
HOH
235
4
HOH
HOH
633
A
HOH
236
4
HOH
HOH
634
A
HOH
237
4
HOH
HOH
635
A
HOH
238
4
HOH
HOH
636
A
HOH
239
4
HOH
HOH
637
A
HOH
240
4
HOH
HOH
638
A
HOH
241
4
HOH
HOH
639
A
HOH
242
4
HOH
HOH
640
A
HOH
243
4
HOH
HOH
641
A
HOH
244
4
HOH
HOH
642
A
HOH
245
4
HOH
HOH
643
A
HOH
246
4
HOH
HOH
644
A
HOH
249
4
HOH
HOH
645
A
HOH
250
4
HOH
HOH
646
A
HOH
251
4
HOH
HOH
647
A
HOH
252
4
HOH
HOH
648
A
HOH
253
4
HOH
HOH
649
A
HOH
254
4
HOH
HOH
650
A
HOH
255
4
HOH
HOH
651
A
HOH
256
4
HOH
HOH
652
A
HOH
257
4
HOH
HOH
653
A
HOH
258
4
HOH
HOH
654
A
HOH
259
4
HOH
HOH
655
A
HOH
260
4
HOH
HOH
656
A
HOH
261
4
HOH
HOH
657
A
HOH
262
4
HOH
HOH
658
A
HOH
263
4
HOH
HOH
659
A
HOH
264
4
HOH
HOH
660
A
HOH
265
4
HOH
HOH
661
A
HOH
266
4
HOH
HOH
662
A
HOH
267
4
HOH
HOH
663
A
HOH
268
4
HOH
HOH
664
A
HOH
269
4
HOH
HOH
665
A
HOH
270
4
HOH
HOH
666
A
HOH
271
4
HOH
HOH
667
A
HOH
272
4
HOH
HOH
668
A
HOH
273
4
HOH
HOH
669
A
HOH
274
4
HOH
HOH
670
A
HOH
275
4
HOH
HOH
671
A
HOH
276
4
HOH
HOH
672
A
HOH
277
4
HOH
HOH
673
A
HOH
278
4
HOH
HOH
674
A
HOH
279
4
HOH
HOH
675
A
HOH
280
4
HOH
HOH
676
A
HOH
281
4
HOH
HOH
677
A
HOH
282
4
HOH
HOH
678
A
HOH
283
4
HOH
HOH
679
A
HOH
284
4
HOH
HOH
680
A
HOH
285
4
HOH
HOH
681
A
HOH
287
4
HOH
HOH
682
A
HOH
288
4
HOH
HOH
683
A
HOH
290
4
HOH
HOH
684
A
HOH
291
4
HOH
HOH
685
A
HOH
292
4
HOH
HOH
686
A
HOH
293
4
HOH
HOH
687
A
HOH
295
4
HOH
HOH
688
A
HOH
296
4
HOH
HOH
689
A
HOH
298
4
HOH
HOH
690
A
HOH
299
4
HOH
HOH
691
A
HOH
300
4
HOH
HOH
692
A
HOH
301
4
HOH
HOH
693
A
HOH
302
4
HOH
HOH
694
A
HOH
303
4
HOH
HOH
695
A
HOH
304
4
HOH
HOH
696
A
HOH
305
4
HOH
HOH
697
A
HOH
306
4
HOH
HOH
698
A
HOH
307
4
HOH
HOH
699
A
HOH
308
4
HOH
HOH
700
A
n
1
1
A
n
2
2
A
GLY
3
n
3
GLY
3
A
PRO
4
n
4
PRO
4
A
VAL
5
n
5
VAL
5
A
PRO
6
n
6
PRO
6
A
SER
7
n
7
SER
7
A
ARG
8
n
8
ARG
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
VAL
11
n
11
VAL
11
A
TYR
12
n
12
TYR
12
A
THR
13
n
13
THR
13
A
ASP
14
n
14
ASP
14
A
VAL
15
n
15
VAL
15
A
ASN
16
n
16
ASN
16
A
THR
17
n
17
THR
17
A
HIS
18
n
18
HIS
18
A
ARG
19
n
19
ARG
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
GLU
22
n
22
GLU
22
A
TYR
23
n
23
TYR
23
A
TRP
24
n
24
TRP
24
A
ASP
25
n
25
ASP
25
A
TYR
26
n
26
TYR
26
A
GLU
27
n
27
GLU
27
A
SER
28
n
28
SER
28
A
HIS
29
n
29
HIS
29
A
VAL
30
n
30
VAL
30
A
VAL
31
n
31
VAL
31
A
GLU
32
n
32
GLU
32
A
TRP
33
n
33
TRP
33
A
GLY
34
n
34
GLY
34
A
ASN
35
n
35
ASN
35
A
GLN
36
n
36
GLN
36
A
ASP
37
n
37
ASP
37
A
ASP
38
n
38
ASP
38
A
TYR
39
n
39
TYR
39
A
GLN
40
n
40
GLN
40
A
LEU
41
n
41
LEU
41
A
VAL
42
n
42
VAL
42
A
ARG
43
n
43
ARG
43
A
LYS
44
n
44
LYS
44
A
LEU
45
n
45
LEU
45
A
GLY
46
n
46
GLY
46
A
ARG
47
n
47
ARG
47
A
GLY
48
n
48
GLY
48
A
LYS
49
n
49
LYS
49
A
TYR
50
n
50
TYR
50
A
SER
51
n
51
SER
51
A
GLU
52
n
52
GLU
52
A
VAL
53
n
53
VAL
53
A
PHE
54
n
54
PHE
54
A
GLU
55
n
55
GLU
55
A
ALA
56
n
56
ALA
56
A
ILE
57
n
57
ILE
57
A
ASN
58
n
58
ASN
58
A
ILE
59
n
59
ILE
59
A
THR
60
n
60
THR
60
A
ASN
61
n
61
ASN
61
A
ASN
62
n
62
ASN
62
A
GLU
63
n
63
GLU
63
A
LYS
64
n
64
LYS
64
A
VAL
65
n
65
VAL
65
A
VAL
66
n
66
VAL
66
A
VAL
67
n
67
VAL
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
LEU
70
n
70
LEU
70
A
LYS
71
n
71
LYS
71
A
PRO
72
n
72
PRO
72
A
VAL
73
n
73
VAL
73
A
LYS
74
n
74
LYS
74
A
LYS
75
n
75
LYS
75
A
LYS
76
n
76
LYS
76
A
LYS
77
n
77
LYS
77
A
ILE
78
n
78
ILE
78
A
LYS
79
n
79
LYS
79
A
ARG
80
n
80
ARG
80
A
GLU
81
n
81
GLU
81
A
ILE
82
n
82
ILE
82
A
LYS
83
n
83
LYS
83
A
ILE
84
n
84
ILE
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
ASN
87
n
87
ASN
87
A
LEU
88
n
88
LEU
88
A
ARG
89
n
89
ARG
89
A
GLY
90
n
90
GLY
90
A
GLY
91
n
91
GLY
91
A
PRO
92
n
92
PRO
92
A
ASN
93
n
93
ASN
93
A
ILE
94
n
94
ILE
94
A
ILE
95
n
95
ILE
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ALA
98
n
98
ALA
98
A
ASP
99
n
99
ASP
99
A
ILE
100
n
100
ILE
100
A
VAL
101
n
101
VAL
101
A
LYS
102
n
102
LYS
102
A
ASP
103
n
103
ASP
103
A
PRO
104
n
104
PRO
104
A
VAL
105
n
105
VAL
105
A
SER
106
n
106
SER
106
A
ARG
107
n
107
ARG
107
A
THR
108
n
108
THR
108
A
PRO
109
n
109
PRO
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
PHE
113
n
113
PHE
113
A
GLU
114
n
114
GLU
114
A
HIS
115
n
115
HIS
115
A
VAL
116
n
116
VAL
116
A
ASN
117
n
117
ASN
117
A
ASN
118
n
118
ASN
118
A
THR
119
n
119
THR
119
A
ASP
120
n
120
ASP
120
A
PHE
121
n
121
PHE
121
A
LYS
122
n
122
LYS
122
A
GLN
123
n
123
GLN
123
A
LEU
124
n
124
LEU
124
A
TYR
125
n
125
TYR
125
A
GLN
126
n
126
GLN
126
A
THR
127
n
127
THR
127
A
LEU
128
n
128
LEU
128
A
THR
129
n
129
THR
129
A
ASP
130
n
130
ASP
130
A
TYR
131
n
131
TYR
131
A
ASP
132
n
132
ASP
132
A
ILE
133
n
133
ILE
133
A
ARG
134
n
134
ARG
134
A
PHE
135
n
135
PHE
135
A
TYR
136
n
136
TYR
136
A
MET
137
n
137
MET
137
A
TYR
138
n
138
TYR
138
A
GLU
139
n
139
GLU
139
A
ILE
140
n
140
ILE
140
A
LEU
141
n
141
LEU
141
A
LYS
142
n
142
LYS
142
A
ALA
143
n
143
ALA
143
A
LEU
144
n
144
LEU
144
A
ASP
145
n
145
ASP
145
A
TYR
146
n
146
TYR
146
A
CYS
147
n
147
CYS
147
A
HIS
148
n
148
HIS
148
A
SER
149
n
149
SER
149
A
MET
150
n
150
MET
150
A
GLY
151
n
151
GLY
151
A
ILE
152
n
152
ILE
152
A
MET
153
n
153
MET
153
A
HIS
154
n
154
HIS
154
A
ARG
155
n
155
ARG
155
A
ASP
156
n
156
ASP
156
A
VAL
157
n
157
VAL
157
A
LYS
158
n
158
LYS
158
A
PRO
159
n
159
PRO
159
A
HIS
160
n
160
HIS
160
A
ASN
161
n
161
ASN
161
A
VAL
162
n
162
VAL
162
A
MET
163
n
163
MET
163
A
ILE
164
n
164
ILE
164
A
ASP
165
n
165
ASP
165
A
HIS
166
n
166
HIS
166
A
GLU
167
n
167
GLU
167
A
HIS
168
n
168
HIS
168
A
ARG
169
n
169
ARG
169
A
LYS
170
n
170
LYS
170
A
LEU
171
n
171
LEU
171
A
ARG
172
n
172
ARG
172
A
LEU
173
n
173
LEU
173
A
ILE
174
n
174
ILE
174
A
ASP
175
n
175
ASP
175
A
TRP
176
n
176
TRP
176
A
GLY
177
n
177
GLY
177
A
LEU
178
n
178
LEU
178
A
ALA
179
n
179
ALA
179
A
GLU
180
n
180
GLU
180
A
PHE
181
n
181
PHE
181
A
TYR
182
n
182
TYR
182
A
HIS
183
n
183
HIS
183
A
PRO
184
n
184
PRO
184
A
GLY
185
n
185
GLY
185
A
GLN
186
n
186
GLN
186
A
GLU
187
n
187
GLU
187
A
TYR
188
n
188
TYR
188
A
ASN
189
n
189
ASN
189
A
VAL
190
n
190
VAL
190
A
ARG
191
n
191
ARG
191
A
VAL
192
n
192
VAL
192
A
ALA
193
n
193
ALA
193
A
SER
194
n
194
SER
194
A
ARG
195
n
195
ARG
195
A
TYR
196
n
196
TYR
196
A
PHE
197
n
197
PHE
197
A
LYS
198
n
198
LYS
198
A
GLY
199
n
199
GLY
199
A
PRO
200
n
200
PRO
200
A
GLU
201
n
201
GLU
201
A
LEU
202
n
202
LEU
202
A
LEU
203
n
203
LEU
203
A
VAL
204
n
204
VAL
204
A
ASP
205
n
205
ASP
205
A
TYR
206
n
206
TYR
206
A
GLN
207
n
207
GLN
207
A
MET
208
n
208
MET
208
A
TYR
209
n
209
TYR
209
A
ASP
210
n
210
ASP
210
A
TYR
211
n
211
TYR
211
A
SER
212
n
212
SER
212
A
LEU
213
n
213
LEU
213
A
ASP
214
n
214
ASP
214
A
MET
215
n
215
MET
215
A
TRP
216
n
216
TRP
216
A
SER
217
n
217
SER
217
A
LEU
218
n
218
LEU
218
A
GLY
219
n
219
GLY
219
A
CYS
220
n
220
CYS
220
A
MET
221
n
221
MET
221
A
LEU
222
n
222
LEU
222
A
ALA
223
n
223
ALA
223
A
SER
224
n
224
SER
224
A
MET
225
n
225
MET
225
A
ILE
226
n
226
ILE
226
A
PHE
227
n
227
PHE
227
A
ARG
228
n
228
ARG
228
A
LYS
229
n
229
LYS
229
A
GLU
230
n
230
GLU
230
A
PRO
231
n
231
PRO
231
A
PHE
232
n
232
PHE
232
A
PHE
233
n
233
PHE
233
A
HIS
234
n
234
HIS
234
A
GLY
235
n
235
GLY
235
A
HIS
236
n
236
HIS
236
A
ASP
237
n
237
ASP
237
A
ASN
238
n
238
ASN
238
A
TYR
239
n
239
TYR
239
A
ASP
240
n
240
ASP
240
A
GLN
241
n
241
GLN
241
A
LEU
242
n
242
LEU
242
A
VAL
243
n
243
VAL
243
A
ARG
244
n
244
ARG
244
A
ILE
245
n
245
ILE
245
A
ALA
246
n
246
ALA
246
A
LYS
247
n
247
LYS
247
A
VAL
248
n
248
VAL
248
A
LEU
249
n
249
LEU
249
A
GLY
250
n
250
GLY
250
A
THR
251
n
251
THR
251
A
GLU
252
n
252
GLU
252
A
ASP
253
n
253
ASP
253
A
LEU
254
n
254
LEU
254
A
TYR
255
n
255
TYR
255
A
ASP
256
n
256
ASP
256
A
TYR
257
n
257
TYR
257
A
ILE
258
n
258
ILE
258
A
ASP
259
n
259
ASP
259
A
LYS
260
n
260
LYS
260
A
TYR
261
n
261
TYR
261
A
ASN
262
n
262
ASN
262
A
ILE
263
n
263
ILE
263
A
GLU
264
n
264
GLU
264
A
LEU
265
n
265
LEU
265
A
ASP
266
n
266
ASP
266
A
PRO
267
n
267
PRO
267
A
ARG
268
n
268
ARG
268
A
PHE
269
n
269
PHE
269
A
ASN
270
n
270
ASN
270
A
ASP
271
n
271
ASP
271
A
ILE
272
n
272
ILE
272
A
LEU
273
n
273
LEU
273
A
GLY
274
n
274
GLY
274
A
ARG
275
n
275
ARG
275
A
HIS
276
n
276
HIS
276
A
SER
277
n
277
SER
277
A
ARG
278
n
278
ARG
278
A
LYS
279
n
279
LYS
279
A
ARG
280
n
280
ARG
280
A
TRP
281
n
281
TRP
281
A
GLU
282
n
282
GLU
282
A
ARG
283
n
283
ARG
283
A
PHE
284
n
284
PHE
284
A
VAL
285
n
285
VAL
285
A
HIS
286
n
286
HIS
286
A
SER
287
n
287
SER
287
A
GLU
288
n
288
GLU
288
A
ASN
289
n
289
ASN
289
A
GLN
290
n
290
GLN
290
A
HIS
291
n
291
HIS
291
A
LEU
292
n
292
LEU
292
A
VAL
293
n
293
VAL
293
A
SER
294
n
294
SER
294
A
PRO
295
n
295
PRO
295
A
GLU
296
n
296
GLU
296
A
ALA
297
n
297
ALA
297
A
LEU
298
n
298
LEU
298
A
ASP
299
n
299
ASP
299
A
PHE
300
n
300
PHE
300
A
LEU
301
n
301
LEU
301
A
ASP
302
n
302
ASP
302
A
LYS
303
n
303
LYS
303
A
LEU
304
n
304
LEU
304
A
LEU
305
n
305
LEU
305
A
ARG
306
n
306
ARG
306
A
TYR
307
n
307
TYR
307
A
ASP
308
n
308
ASP
308
A
HIS
309
n
309
HIS
309
A
GLN
310
n
310
GLN
310
A
SER
311
n
311
SER
311
A
ARG
312
n
312
ARG
312
A
LEU
313
n
313
LEU
313
A
THR
314
n
314
THR
314
A
ALA
315
n
315
ALA
315
A
ARG
316
n
316
ARG
316
A
GLU
317
n
317
GLU
317
A
ALA
318
n
318
ALA
318
A
MET
319
n
319
MET
319
A
GLU
320
n
320
GLU
320
A
HIS
321
n
321
HIS
321
A
PRO
322
n
322
PRO
322
A
TYR
323
n
323
TYR
323
A
PHE
324
n
324
PHE
324
A
TYR
325
n
325
TYR
325
A
THR
326
n
326
THR
326
A
VAL
327
n
327
VAL
327
A
VAL
328
n
328
VAL
328
A
LYS
329
n
329
LYS
329
A
ASP
330
n
330
ASP
330
A
n
331
331
A
n
332
332
A
n
333
333
A
n
334
334
A
n
335
335
A
1.3566
-0.0588
-0.1516
1.1635
-0.0875
1.2403
0.0066
0.0749
-0.0039
0.1319
0.0395
-0.0405
-0.0324
-0.0080
-0.0462
-0.1436
0.0018
-0.0065
-0.3684
-0.0159
-0.2803
refined
-3.4650
-58.5810
-41.8360
X-RAY DIFFRACTION
5.5697
2.5801
1.0772
1.2225
0.7036
1.7746
0.0453
0.0331
-0.5003
0.1703
0.0736
-0.3742
0.1128
0.2454
-0.1189
-0.1216
0.0470
-0.0106
-0.1790
-0.0775
-0.0987
refined
21.4690
-63.1900
-46.3130
X-RAY DIFFRACTION
A
3
A
3
A
10
A
10
X-RAY DIFFRACTION
1
A
117
A
117
A
330
A
330
X-RAY DIFFRACTION
1
A
11
A
11
A
116
A
116
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
46
A
N
GLY
46
A
O
VAL
53
A
O
VAL
53
A
N
PHE
54
A
N
PHE
54
A
O
VAL
67
A
O
VAL
67
A
N
LYS
68
A
N
LYS
68
A
O
LEU
111
A
O
LEU
111
A
O
ALA
110
A
O
ALA
110
A
N
VAL
101
A
N
VAL
101
A
N
MET
153
A
N
MET
153
A
O
GLU
180
A
O
GLU
180
A
N
MET
163
A
N
MET
163
A
O
ARG
172
A
O
ARG
172
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
GLN
331
A
GLN
331
1
Y
1
A
ALA
332
A
ALA
332
1
Y
1
A
ARG
333
A
ARG
333
1
Y
1
A
MET
334
A
MET
334
1
Y
1
A
GLY
335
A
GLY
335
1
Y
1
A
A
O
O
HOH
HOH
421
669
2.07
1
A
A
O
O
HOH
HOH
507
677
2.09
1
A
PRO
6
B
-49.78
150.69
1
A
VAL
73
-134.34
-61.89
1
A
LYS
74
-175.18
130.29
1
A
ASP
156
-155.13
49.38
1
A
ASP
175
41.11
81.97
1
A
ALA
193
64.32
157.07
1
A
MET
208
-93.01
59.40
1
A
HIS
234
-101.23
69.77
24.780
-3.39
0.00
0.37
3.52
0.00
0.14
0.957
0.939
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23346
0.18522
0.1877
0.1877
1.95
19.70
1161
22776
21615
5.1
99.67
10.038
0.151
RANDOM
LIKELY RESIDUAL
1
isotropic plus TLS refinement
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.217
0.177
0.80
0.80
1.20
PDB entry 3BQC
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.95
19.70
300
3095
22
0
2773
0.013
0.022
2925
0.001
0.020
2030
1.397
1.955
3971
0.918
3.000
4893
5.963
5.000
339
33.282
23.101
158
14.570
15.000
513
18.860
15.000
26
0.087
0.200
407
0.006
0.020
3259
0.001
0.020
642
0.215
0.200
664
0.196
0.200
2338
0.190
0.200
1465
0.089
0.200
1554
0.179
0.200
307
0.136
0.200
24
0.264
0.200
85
0.192
0.200
24
3.833
6.000
2172
1.310
6.000
666
4.315
9.000
2735
3.674
6.000
1576
4.748
9.000
1236
0.378
0.222
2.003
80
1554
20
97.32
25.1
1.95
19.7
3C13
22799
22776
0
0
0.112
0.112
1
13.9
4.5
99.9
0.626
1.95
2.02
2.0
2247
0.626
1
4.5
100
refinement
REFMAC
5.2.0019
data reduction
DENZO
data scaling
SCALEPACK
Low pH-value crystal structure of emodin in complex with the catalytic subunit of protein kinase CK2
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
PRO
20
A
PRO
20
HELX_P
A
ASP
25
A
ASP
25
1
1
6
A
TYR
26
A
TYR
26
HELX_P
A
HIS
29
A
HIS
29
5
2
4
A
ASN
35
A
ASN
35
HELX_P
A
ASP
37
A
ASP
37
5
3
3
A
LYS
74
A
LYS
74
HELX_P
A
ARG
89
A
ARG
89
1
4
16
A
ASP
120
A
ASP
120
HELX_P
A
LEU
124
A
LEU
124
5
5
5
A
THR
129
A
THR
129
HELX_P
A
MET
150
A
MET
150
1
6
22
A
LYS
158
A
LYS
158
HELX_P
A
HIS
160
A
HIS
160
5
7
3
A
ASP
175
A
ASP
175
HELX_P
A
ALA
179
A
ALA
179
5
8
5
A
SER
194
A
SER
194
HELX_P
A
LYS
198
A
LYS
198
5
9
5
A
GLY
199
A
GLY
199
HELX_P
A
VAL
204
A
VAL
204
1
10
6
A
TYR
211
A
TYR
211
HELX_P
A
ARG
228
A
ARG
228
1
11
18
A
ASP
237
A
ASP
237
HELX_P
A
GLY
250
A
GLY
250
1
12
14
A
GLY
250
A
GLY
250
HELX_P
A
TYR
261
A
TYR
261
1
13
12
A
ASP
266
A
ASP
266
HELX_P
A
ILE
272
A
ILE
272
5
14
7
A
ARG
280
A
ARG
280
HELX_P
A
VAL
285
A
VAL
285
5
15
6
A
ASN
289
A
ASN
289
HELX_P
A
VAL
293
A
VAL
293
5
16
5
A
SER
294
A
SER
294
HELX_P
A
LEU
305
A
LEU
305
1
17
12
A
ASP
308
A
ASP
308
HELX_P
A
ARG
312
A
ARG
312
5
18
5
A
THR
314
A
THR
314
HELX_P
A
HIS
321
A
HIS
321
1
19
8
A
PRO
322
A
PRO
322
HELX_P
A
TYR
325
A
TYR
325
5
20
4
TRANSFERASE
protein kinase CK2, casein kinase 2, eukaryotic protein kinases, emodin, ATP-competitive inhibitor, ATP-binding, Nucleotide-binding, Serine/threonine-protein kinase, Transferase, Wnt signaling pathway
A
GLU
230
A
GLU
230
1
A
PRO
231
A
PRO
231
-8.82
CSK21_HUMAN
UNP
1
1
P68400
MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKR
EIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH
NVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD
QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME
HPYFYTVVKDQARMG
1
335
3C13
1
335
P68400
A
1
1
335
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
39
A
TYR
39
A
ARG
47
A
ARG
47
A
SER
51
A
SER
51
A
ASN
58
A
ASN
58
A
LYS
64
A
LYS
64
A
LEU
70
A
LEU
70
A
PRO
109
A
PRO
109
A
GLU
114
A
GLU
114
A
LEU
97
A
LEU
97
A
LYS
102
A
LYS
102
A
ILE
152
A
ILE
152
A
MET
153
A
MET
153
A
GLU
180
A
GLU
180
A
PHE
181
A
PHE
181
A
VAL
162
A
VAL
162
A
ASP
165
A
ASP
165
A
LYS
170
A
LYS
170
A
LEU
173
A
LEU
173
BINDING SITE FOR RESIDUE CL A 336
A
CL
336
Software
2
BINDING SITE FOR RESIDUE CL A 337
A
CL
337
Software
5
BINDING SITE FOR RESIDUE EMO A 400
A
EMO
400
Software
12
A
ARG
80
A
ARG
80
2
1_555
A
ARG
155
A
ARG
155
2
1_555
A
HIS
148
A
HIS
148
5
1_555
A
THR
314
A
THR
314
5
1_555
A
ALA
315
A
ALA
315
5
1_555
A
HOH
431
E
HOH
5
1_555
A
HOH
462
E
HOH
5
1_555
A
VAL
53
A
VAL
53
12
1_555
A
VAL
66
A
VAL
66
12
1_555
A
LYS
68
A
LYS
68
12
1_555
A
ILE
95
A
ILE
95
12
1_555
A
PHE
113
A
PHE
113
12
1_555
A
VAL
116
A
VAL
116
12
1_555
A
ASN
118
A
ASN
118
12
1_555
A
MET
163
A
MET
163
12
1_555
A
ILE
174
A
ILE
174
12
1_555
A
ASP
175
A
ASP
175
12
1_555
A
HOH
405
E
HOH
12
1_555
A
HOH
432
E
HOH
12
1_555
4
P 1 21 1