0.012545 0.000000 0.011336 0.000000 0.018657 0.000000 0.000000 0.000000 0.020504 0.000000 0.000000 0.000000 Ho, K.L. McNae, I.W. Schmiedeberg, L. Klose, R.J. Bird, A.P. Walkinshaw, M.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 132.100 90.000 79.710 53.600 65.730 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Mol.Cell MOCEFL 2168 1097-2765 29 525 531 10.1016/j.molcel.2007.12.028 18313390 MeCP2 binding to DNA depends upon hydration at methyl-CpG 2008 10.2210/pdb3c2i/pdb pdb_00003c2i 100 1 mirrors CCD 2006-08-07 MARMOSAIC 225 mm CCD silicon SINGLE WAVELENGTH M x-ray 1 0.97800 1.0 BM14 ESRF 0.97800 SYNCHROTRON ESRF BEAMLINE BM14 11281.381 Methyl-CpG-binding protein 2 UNP residues 77-167, Human MeCP2 MBD domain A140(MSE) 1 man polymer 6138.003 DNA (5'-D(*DTP*DCP*DTP*DGP*DGP*DAP*DAP*(5CM)P*DGP*DGP*DAP*DAP*DTP*DTP*DCP*DTP*DTP*DCP*DTP*DA)-3') 1 syn polymer 6156.032 DNA (5'-D(*DAP*DTP*DAP*DGP*DAP*DAP*DGP*DAP*DAP*DTP*DTP*DCP*(5CM)P*DGP*DTP*DTP*DCP*DCP*DAP*DG)-3') 1 syn polymer 18.015 water 47 nat water MeCP-2 protein, MeCP2 no yes ASASPKQRRSIIRDRGP(MSE)YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELI(MSE)YFEKVGDT SLDPNDFDFTVTGRGSPSRHHHHHH ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDTSLDPNDFD FTVTGRGSPSRHHHHHH A polypeptide(L) no yes (DT)(DC)(DT)(DG)(DG)(DA)(DA)(5CM)(DG)(DG)(DA)(DA)(DT)(DT)(DC)(DT)(DT)(DC)(DT) (DA) TCTGGAACGGAATTCTTCTA B polydeoxyribonucleotide no yes (DA)(DT)(DA)(DG)(DA)(DA)(DG)(DA)(DA)(DT)(DT)(DC)(5CM)(DG)(DT)(DT)(DC)(DC)(DA) (DG) ATAGAAGAATTCCGTTCCAG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample MECP2 9606 Homo sapiens 562 Escherichia coli BL21(DE3)pLys plasmid pET30b 1 2.21 44.33 VAPOR DIFFUSION, HANGING DROP 6.5 26% PEG2000, 0.2M Ammonium acetate, 0.01M Mg acetate, 0.05M Na cacodylate pH6.5, 0.002M DTT, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 PEG2000 1 Ammonium acetate 1 Mg acetate 1 Na cacodylate 1 HOH 1 PEG2000 2 Ammonium acetate 2 Mg acetate 2 Na cacodylate 2 HOH 2 -13.134 1 19 B 2 C 40 -1.661 B_DC2:DG40_C 1 -5.465 -0.081 0.119 -0.184 -1.291 1 20 B 3 C 39 1.832 B_DT3:DA39_C 2 -3.289 -0.230 0.051 -0.375 9.161 1 19 B 4 C 38 5.688 B_DG4:DC38_C 3 -7.591 -0.436 0.155 -0.190 6.212 1 19 B 5 C 37 0.412 B_DG5:DC37_C 4 -10.624 -0.700 -0.017 -0.416 -4.051 1 20 B 6 C 36 -0.170 B_DA6:DT36_C 5 -9.789 0.266 0.052 -0.354 -5.756 1 20 B 7 C 35 -0.979 B_DA7:DT35_C 6 -8.833 -0.077 0.328 -0.227 -8.530 1 19 B 8 C 34 -3.419 B_5CM8:DG34_C 7 -4.548 0.318 0.101 -0.283 -9.472 1 19 B 9 C 33 1.665 B_DG9:5CM33_C 8 -7.544 -0.111 -0.118 -0.081 3.496 1 19 B 10 C 32 1.278 B_DG10:DC32_C 9 -2.442 -0.436 -0.005 -0.272 1.276 1 20 B 11 C 31 -2.191 B_DA11:DT31_C 10 -19.739 0.191 -0.174 -0.163 0.756 1 20 B 12 C 30 0.447 B_DA12:DT30_C 11 -14.197 -0.005 0.060 -0.322 -2.221 1 20 B 13 C 29 -2.372 B_DT13:DA29_C 12 -15.431 -0.014 0.088 -0.287 -1.905 1 20 B 14 C 28 2.355 B_DT14:DA28_C 13 -15.022 0.163 0.004 -0.095 -10.111 1 19 B 15 C 27 2.413 B_DC15:DG27_C 14 -14.195 0.131 0.357 -0.004 -6.045 1 20 B 16 C 26 -1.264 B_DT16:DA26_C 15 -10.410 -0.511 0.167 -0.241 -5.072 1 20 B 17 C 25 -2.561 B_DT17:DA25_C 16 -19.431 -0.058 -0.016 -0.502 -5.821 1 19 B 18 C 24 5.495 B_DC18:DG24_C 17 -5.351 0.963 0.086 -0.334 -11.672 1 20 B 19 C 23 7.235 B_DT19:DA23_C 18 -20.254 -0.194 0.331 0.071 -7.117 1 20 B 20 C 22 3.443 B_DA20:DT22_C 19 -8.099 0.072 -0.009 -0.272 2.998 28.983 B B 2 3 1.839 C C 40 39 3.030 0.920 -0.319 -0.600 BB_DC2DT3:DA39DG40_CC 1 0.955 -1.909 28.954 -1.385 0.832 3.163 34.536 B B 3 4 5.792 C C 39 38 3.084 3.433 0.448 0.892 BB_DT3DG4:DC38DA39_CC 2 0.624 -1.052 34.365 0.994 -0.663 3.387 33.063 B B 4 5 7.769 C C 38 37 3.362 4.407 -0.430 0.274 BB_DG4DG5:DC37DC38_CC 3 -1.742 3.072 32.731 -0.291 0.450 3.420 40.144 B B 5 6 4.266 C C 37 36 3.446 2.923 -0.209 -0.331 BB_DG5DA6:DT36DC37_CC 4 -2.999 4.377 39.933 -0.833 -0.055 3.306 36.835 B B 6 7 -4.772 C C 36 35 3.254 -3.010 -0.429 -0.541 BB_DA6DA7:DT35DT36_CC 5 -2.320 3.677 36.645 -0.445 0.362 3.444 37.445 B B 7 8 -5.399 C C 35 34 3.409 -3.460 -0.224 -0.749 BB_DA75CM8:DG34DT35_CC 6 2.189 -3.417 37.228 -0.690 0.650 3.397 42.300 B B 8 9 1.990 C C 34 33 3.373 1.435 0.270 0.516 BB_5CM8DG9:5CM33DG34_CC 7 2.009 -2.786 42.231 0.563 -0.161 2.996 27.565 B B 9 10 6.500 C C 33 32 2.975 3.090 0.581 0.538 BB_DG9DG10:DC325CM33_CC 8 -0.907 1.908 27.380 0.439 -1.422 3.536 40.393 B B 10 11 3.367 C C 32 31 3.425 2.323 -1.474 1.054 BB_DG10DA11:DT31DC32_CC 9 -1.736 2.517 40.293 1.248 1.927 3.149 38.162 B B 11 12 -5.578 C C 31 30 3.158 -3.642 0.323 -0.072 BB_DA11DA12:DT30DT31_CC 10 -0.286 0.438 37.993 0.334 -0.530 3.377 32.413 B B 12 13 -2.326 C C 30 29 3.356 -1.298 0.168 -0.501 BB_DA12DT13:DA29DT30_CC 11 0.807 -1.447 32.378 -0.662 -0.155 3.151 35.701 B B 13 14 -0.560 C C 29 28 3.145 -0.343 0.094 -0.495 BB_DT13DT14:DA28DA29_CC 12 1.276 -2.083 35.677 -0.760 0.024 3.498 39.305 B B 14 15 -1.260 C C 28 27 3.493 -0.847 -0.025 -0.432 BB_DT14DC15:DG27DA28_CC 13 -1.933 2.875 39.251 -0.535 -0.209 3.269 28.699 B B 15 16 -3.767 C C 27 26 3.239 -1.865 -0.654 -0.125 BB_DC15DT16:DA26DG27_CC 14 -1.469 2.968 28.602 0.166 0.990 3.077 41.852 B B 16 17 -6.024 C C 26 25 3.166 -4.295 0.004 0.735 BB_DT16DT17:DA25DA26_CC 15 1.512 -2.121 41.614 1.459 0.146 3.356 42.698 B B 17 18 -2.888 C C 25 24 3.394 -2.102 0.910 1.113 BB_DT17DC18:DG24DA25_CC 16 0.931 -1.279 42.639 1.747 -1.153 3.459 29.770 B B 18 19 -1.405 C C 24 23 3.448 -0.722 -0.887 0.798 BB_DC18DT19:DA23DG24_CC 17 -1.161 2.260 29.739 1.713 1.470 3.189 45.727 B B 19 20 -2.851 C C 23 22 3.224 -2.213 0.917 1.763 BB_DT19DA20:DT22DA23_CC 18 2.931 -3.776 45.587 2.458 -0.930 database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Other Database references Derived calculations 1 0 2008-05-13 1 1 2011-07-13 1 2 2017-01-11 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details RCSB Y PDBJ 2008-01-25 REL REL HOH water synthetic oligonucleotide sample synthetic oligonucleotide sample HOH 3 4 HOH HOH 176 A HOH 5 4 HOH HOH 177 A HOH 6 4 HOH HOH 178 A HOH 9 4 HOH HOH 179 A HOH 12 4 HOH HOH 180 A HOH 20 4 HOH HOH 181 A HOH 21 4 HOH HOH 182 A HOH 22 4 HOH HOH 183 A HOH 23 4 HOH HOH 184 A HOH 28 4 HOH HOH 185 A HOH 33 4 HOH HOH 186 A HOH 34 4 HOH HOH 187 A HOH 37 4 HOH HOH 188 A HOH 40 4 HOH HOH 189 A HOH 41 4 HOH HOH 190 A HOH 43 4 HOH HOH 191 A HOH 45 4 HOH HOH 192 A HOH 1 4 HOH HOH 21 B HOH 4 4 HOH HOH 22 B HOH 13 4 HOH HOH 23 B HOH 14 4 HOH HOH 24 B HOH 15 4 HOH HOH 25 B HOH 17 4 HOH HOH 26 B HOH 18 4 HOH HOH 27 B HOH 11 4 HOH HOH 29 B HOH 7 4 HOH HOH 30 B HOH 30 4 HOH HOH 31 B HOH 24 4 HOH HOH 32 B HOH 46 4 HOH HOH 33 B HOH 19 4 HOH HOH 174 B HOH 47 4 HOH HOH 175 B HOH 2 4 HOH HOH 41 C HOH 8 4 HOH HOH 42 C HOH 10 4 HOH HOH 43 C HOH 16 4 HOH HOH 44 C HOH 39 4 HOH HOH 45 C HOH 25 4 HOH HOH 46 C HOH 26 4 HOH HOH 47 C HOH 27 4 HOH HOH 48 C HOH 29 4 HOH HOH 49 C HOH 31 4 HOH HOH 50 C HOH 32 4 HOH HOH 51 C HOH 35 4 HOH HOH 52 C HOH 36 4 HOH HOH 53 C HOH 38 4 HOH HOH 54 C HOH 42 4 HOH HOH 55 C HOH 44 4 HOH HOH 56 C Se 59.731 0.837 0.365 0.147 1.023 Se 60.000 0.971 0.024 0.052 0.861 0.440 330 0.500 590 0.450 759 0.380 905 0.290 1004 0.190 1129 0.110 1190 0.060 1208 0.530 0.530 0.550 7115 6648 467 0.940 0.950 0.870 317 261 56 0.900 0.910 0.730 972 883 89 0.840 0.850 0.760 1222 1131 91 0.640 0.650 0.540 1207 1136 71 0.300 0.300 0.270 2152 2038 114 0.140 0.140 0.150 1245 1199 46 n 1 77 A n 2 78 A n 3 79 A n 4 80 A n 5 81 A n 6 82 A n 7 83 A n 8 84 A n 9 85 A n 10 86 A n 11 87 A n 12 88 A n 13 89 A n 14 90 A ARG 91 n 15 ARG 91 A GLY 92 n 16 GLY 92 A PRO 93 n 17 PRO 93 A MSE 94 n 18 MSE 94 A TYR 95 n 19 TYR 95 A ASP 96 n 20 ASP 96 A ASP 97 n 21 ASP 97 A PRO 98 n 22 PRO 98 A THR 99 n 23 THR 99 A LEU 100 n 24 LEU 100 A PRO 101 n 25 PRO 101 A GLU 102 n 26 GLU 102 A GLY 103 n 27 GLY 103 A TRP 104 n 28 TRP 104 A THR 105 n 29 THR 105 A ARG 106 n 30 ARG 106 A LYS 107 n 31 LYS 107 A LEU 108 n 32 LEU 108 A LYS 109 n 33 LYS 109 A GLN 110 n 34 GLN 110 A ARG 111 n 35 ARG 111 A LYS 112 n 36 LYS 112 A SER 113 n 37 SER 113 A GLY 114 n 38 GLY 114 A ARG 115 n 39 ARG 115 A SER 116 n 40 SER 116 A ALA 117 n 41 ALA 117 A GLY 118 n 42 GLY 118 A LYS 119 n 43 LYS 119 A TYR 120 n 44 TYR 120 A ASP 121 n 45 ASP 121 A VAL 122 n 46 VAL 122 A TYR 123 n 47 TYR 123 A LEU 124 n 48 LEU 124 A ILE 125 n 49 ILE 125 A ASN 126 n 50 ASN 126 A PRO 127 n 51 PRO 127 A GLN 128 n 52 GLN 128 A GLY 129 n 53 GLY 129 A LYS 130 n 54 LYS 130 A ALA 131 n 55 ALA 131 A PHE 132 n 56 PHE 132 A ARG 133 n 57 ARG 133 A SER 134 n 58 SER 134 A LYS 135 n 59 LYS 135 A VAL 136 n 60 VAL 136 A GLU 137 n 61 GLU 137 A LEU 138 n 62 LEU 138 A ILE 139 n 63 ILE 139 A MSE 140 n 64 MSE 140 A TYR 141 n 65 TYR 141 A PHE 142 n 66 PHE 142 A GLU 143 n 67 GLU 143 A LYS 144 n 68 LYS 144 A VAL 145 n 69 VAL 145 A GLY 146 n 70 GLY 146 A ASP 147 n 71 ASP 147 A THR 148 n 72 THR 148 A SER 149 n 73 SER 149 A LEU 150 n 74 LEU 150 A ASP 151 n 75 ASP 151 A PRO 152 n 76 PRO 152 A ASN 153 n 77 ASN 153 A ASP 154 n 78 ASP 154 A PHE 155 n 79 PHE 155 A ASP 156 n 80 ASP 156 A PHE 157 n 81 PHE 157 A THR 158 n 82 THR 158 A VAL 159 n 83 VAL 159 A THR 160 n 84 THR 160 A GLY 161 n 85 GLY 161 A ARG 162 n 86 ARG 162 A n 87 163 A n 88 164 A n 89 165 A n 90 166 A n 91 167 A n 92 168 A n 93 169 A n 94 170 A n 95 171 A n 96 172 A n 97 173 A DT 1 n 1 DT 1 B DC 2 n 2 DC 2 B DT 3 n 3 DT 3 B DG 4 n 4 DG 4 B DG 5 n 5 DG 5 B DA 6 n 6 DA 6 B DA 7 n 7 DA 7 B 5CM 8 n 8 5CM 8 B DG 9 n 9 DG 9 B DG 10 n 10 DG 10 B DA 11 n 11 DA 11 B DA 12 n 12 DA 12 B DT 13 n 13 DT 13 B DT 14 n 14 DT 14 B DC 15 n 15 DC 15 B DT 16 n 16 DT 16 B DT 17 n 17 DT 17 B DC 18 n 18 DC 18 B DT 19 n 19 DT 19 B DA 20 n 20 DA 20 B DA 21 n 1 DA 21 C DT 22 n 2 DT 22 C DA 23 n 3 DA 23 C DG 24 n 4 DG 24 C DA 25 n 5 DA 25 C DA 26 n 6 DA 26 C DG 27 n 7 DG 27 C DA 28 n 8 DA 28 C DA 29 n 9 DA 29 C DT 30 n 10 DT 30 C DT 31 n 11 DT 31 C DC 32 n 12 DC 32 C 5CM 33 n 13 5CM 33 C DG 34 n 14 DG 34 C DT 35 n 15 DT 35 C DT 36 n 16 DT 36 C DC 37 n 17 DC 37 C DC 38 n 18 DC 38 C DA 39 n 19 DA 39 C DG 40 n 20 DG 40 C author_and_software_defined_assembly PISA 3 trimeric 4520 -12.7 10880 A MSE 94 SELENOMETHIONINE A MSE 18 MET A MSE 140 SELENOMETHIONINE A MSE 64 MET B 5CM 8 B 5CM 8 DC C 5CM 33 C 5CM 13 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 105 A N THR 29 A O ILE 125 A O ILE 49 A N LEU 124 A N LEU 48 A O PHE 132 A O PHE 56 1 A ALA 77 A ALA 1 1 Y 1 A SER 78 A SER 2 1 Y 1 A ALA 79 A ALA 3 1 Y 1 A SER 80 A SER 4 1 Y 1 A PRO 81 A PRO 5 1 Y 1 A LYS 82 A LYS 6 1 Y 1 A GLN 83 A GLN 7 1 Y 1 A ARG 84 A ARG 8 1 Y 1 A ARG 85 A ARG 9 1 Y 1 A SER 86 A SER 10 1 Y 1 A ILE 87 A ILE 11 1 Y 1 A ILE 88 A ILE 12 1 Y 1 A ARG 89 A ARG 13 1 Y 1 A ASP 90 A ASP 14 1 Y 1 A GLY 163 A GLY 87 1 Y 1 A SER 164 A SER 88 1 Y 1 A PRO 165 A PRO 89 1 Y 1 A SER 166 A SER 90 1 Y 1 A ARG 167 A ARG 91 1 Y 1 A HIS 168 A HIS 92 1 Y 1 A HIS 169 A HIS 93 1 Y 1 A HIS 170 A HIS 94 1 Y 1 A HIS 171 A HIS 95 1 Y 1 A HIS 172 A HIS 96 1 Y 1 A HIS 173 A HIS 97 1 Y 1 -4.26 0.70 108.00 103.74 B B B O4' C1' N9 DA DA DA 11 11 11 N 1 -4.56 0.70 108.00 103.44 B B B O4' C1' N9 DA DA DA 12 12 12 N 1 -7.05 0.70 108.00 100.95 C C C O4' C1' N9 DA DA DA 21 21 21 N 1 2.09 0.30 108.30 110.39 C C C O4' C1' N1 DT DT DT 22 22 22 N 1 3.68 0.30 108.30 111.98 C C C O4' C1' N9 DG DG DG 24 24 24 N 1 -6.90 0.70 108.00 101.10 C C C O4' C1' N1 DT DT DT 30 30 30 N 1 8.06 1.20 119.70 127.76 C C C C3' O3' P DT DT DT 30 30 31 Y 1 10.11 1.20 119.70 129.81 C C C C3' O3' P DT DT DC 31 31 32 Y 1 5.03 0.30 108.30 113.33 C C C O4' C1' N1 DC DC DC 32 32 32 N 1 -3.82 0.60 122.90 119.08 C C C C6 C5 C7 DT DT DT 36 36 36 N 1 3.44 0.30 108.30 111.74 C C C O4' C1' N9 DG DG DG 40 40 40 N 1 B B O3' C3' DC DC 18 18 -0.037 0.006 1.419 1.382 N 1 A ASN 126 -41.97 152.46 2.50 1000.00 0.250 7115 59.076 0.290 0.000 0.070 0.300 0.000 -0.490 0.955 0.924 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.276 0.212 0.215 2.500 23.480 331 7115 7115 4.700 98.530 24.894 0.266 RANDOM 1 THROUGHOUT 0.00 0.00 SAD 0.651 0.325 0.800 0.800 1.200 MAXIMUM LIKELIHOOD MASK 2.500 23.480 47 1447 0 816 584 0.009 0.021 1512 1.848 2.628 2212 5.524 5.000 71 35.425 22.759 29 20.454 15.000 107 21.077 15.000 6 0.078 0.200 237 0.005 0.020 870 0.219 0.200 551 0.317 0.200 893 0.189 0.200 91 0.231 0.200 29 0.129 0.200 5 0.693 1.500 363 0.898 2.000 576 1.001 3.000 1553 1.579 4.500 1636 0.429 0.428 2.565 22 442 464 20 88.380 84.3 2.500 48.795 3C2I 7122 7122 0 0 0.075 0.075 1 3.100 7.100 98.500 0.377 2.50 2.64 2.0 5055 950 0.377 1 5.30 90.70 0.312 2.64 2.80 2.3 7069 1000 0.312 1 7.10 99.90 0.205 2.80 2.99 3.6 6863 921 0.205 1 7.50 100.00 0.095 2.99 3.23 2.1 6483 871 0.095 1 7.40 100.00 0.076 3.23 3.54 2.1 5886 791 0.076 1 7.40 99.90 0.069 3.54 3.95 6.2 5433 730 0.069 1 7.40 100.00 0.062 3.95 4.56 9.9 4710 636 0.062 1 7.40 100.00 0.069 4.56 5.59 8.4 4123 560 0.069 1 7.40 100.00 0.060 5.59 7.91 7.7 3118 429 0.060 1 7.30 100.00 0.056 7.91 25.66 9.6 1567 234 0.056 1 6.70 96.40 data reduction A.G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other phasing Tom Terwilliger terwilliger@LANL.gov 19-June-2006 http://www.solve.lanl.gov/ SOLVE package 2.11 phasing Terwilliger, T. C terwilliger@LANL.gov 24-June-2006 http://www.solve.lanl.gov/ RESOLVE package 2.11 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 The Crystal Structure of Methyl-CpG Binding Domain of Human MeCP2 in Complex with a Methylated DNA Sequence from BDNF 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N A SER 134 A SER 58 HELX_P A GLY 146 A GLY 70 1 1 13 covale 1.326 both A PRO 93 A C PRO 17 1_555 A MSE 94 A N MSE 18 1_555 covale 1.323 both A MSE 94 A C MSE 18 1_555 A TYR 95 A N TYR 19 1_555 covale 1.331 both A ILE 139 A C ILE 63 1_555 A MSE 140 A N MSE 64 1_555 covale 1.329 both A MSE 140 A C MSE 64 1_555 A TYR 141 A N TYR 65 1_555 covale 1.590 both B DA 7 B O3' DA 7 1_555 B 5CM 8 B P 5CM 8 1_555 covale 1.608 both B 5CM 8 B O3' 5CM 8 1_555 B DG 9 B P DG 9 1_555 covale 1.615 both C DC 32 C O3' DC 12 1_555 C 5CM 33 C P 5CM 13 1_555 covale 1.597 both C 5CM 33 C O3' 5CM 13 1_555 C DG 34 C P DG 14 1_555 hydrog WATSON-CRICK B DC 2 B N3 DC 2 1_555 C DG 40 C N1 DG 20 1_555 hydrog WATSON-CRICK B DC 2 B N4 DC 2 1_555 C DG 40 C O6 DG 20 1_555 hydrog WATSON-CRICK B DC 2 B O2 DC 2 1_555 C DG 40 C N2 DG 20 1_555 hydrog WATSON-CRICK B DT 3 B N3 DT 3 1_555 C DA 39 C N1 DA 19 1_555 hydrog WATSON-CRICK B DT 3 B O4 DT 3 1_555 C DA 39 C N6 DA 19 1_555 hydrog WATSON-CRICK B DG 4 B N1 DG 4 1_555 C DC 38 C N3 DC 18 1_555 hydrog WATSON-CRICK B DG 4 B N2 DG 4 1_555 C DC 38 C O2 DC 18 1_555 hydrog WATSON-CRICK B DG 4 B O6 DG 4 1_555 C DC 38 C N4 DC 18 1_555 hydrog WATSON-CRICK B DG 5 B N1 DG 5 1_555 C DC 37 C N3 DC 17 1_555 hydrog WATSON-CRICK B DG 5 B N2 DG 5 1_555 C DC 37 C O2 DC 17 1_555 hydrog WATSON-CRICK B DG 5 B O6 DG 5 1_555 C DC 37 C N4 DC 17 1_555 hydrog WATSON-CRICK B DA 6 B N1 DA 6 1_555 C DT 36 C N3 DT 16 1_555 hydrog WATSON-CRICK B DA 6 B N6 DA 6 1_555 C DT 36 C O4 DT 16 1_555 hydrog WATSON-CRICK B DA 7 B N1 DA 7 1_555 C DT 35 C N3 DT 15 1_555 hydrog WATSON-CRICK B DA 7 B N6 DA 7 1_555 C DT 35 C O4 DT 15 1_555 hydrog WATSON-CRICK B 5CM 8 B N3 5CM 8 1_555 C DG 34 C N1 DG 14 1_555 hydrog WATSON-CRICK B 5CM 8 B N4 5CM 8 1_555 C DG 34 C O6 DG 14 1_555 hydrog WATSON-CRICK B 5CM 8 B O2 5CM 8 1_555 C DG 34 C N2 DG 14 1_555 hydrog WATSON-CRICK B DG 9 B N1 DG 9 1_555 C 5CM 33 C N3 5CM 13 1_555 hydrog WATSON-CRICK B DG 9 B N2 DG 9 1_555 C 5CM 33 C O2 5CM 13 1_555 hydrog WATSON-CRICK B DG 9 B O6 DG 9 1_555 C 5CM 33 C N4 5CM 13 1_555 hydrog WATSON-CRICK B DG 10 B N1 DG 10 1_555 C DC 32 C N3 DC 12 1_555 hydrog WATSON-CRICK B DG 10 B N2 DG 10 1_555 C DC 32 C O2 DC 12 1_555 hydrog WATSON-CRICK B DG 10 B O6 DG 10 1_555 C DC 32 C N4 DC 12 1_555 hydrog WATSON-CRICK B DA 11 B N1 DA 11 1_555 C DT 31 C N3 DT 11 1_555 hydrog WATSON-CRICK B DA 11 B N6 DA 11 1_555 C DT 31 C O4 DT 11 1_555 hydrog WATSON-CRICK B DA 12 B N1 DA 12 1_555 C DT 30 C N3 DT 10 1_555 hydrog WATSON-CRICK B DA 12 B N6 DA 12 1_555 C DT 30 C O4 DT 10 1_555 hydrog WATSON-CRICK B DT 13 B N3 DT 13 1_555 C DA 29 C N1 DA 9 1_555 hydrog WATSON-CRICK B DT 13 B O4 DT 13 1_555 C DA 29 C N6 DA 9 1_555 hydrog WATSON-CRICK B DT 14 B N3 DT 14 1_555 C DA 28 C N1 DA 8 1_555 hydrog WATSON-CRICK B DT 14 B O4 DT 14 1_555 C DA 28 C N6 DA 8 1_555 hydrog WATSON-CRICK B DC 15 B N3 DC 15 1_555 C DG 27 C N1 DG 7 1_555 hydrog WATSON-CRICK B DC 15 B N4 DC 15 1_555 C DG 27 C O6 DG 7 1_555 hydrog WATSON-CRICK B DC 15 B O2 DC 15 1_555 C DG 27 C N2 DG 7 1_555 hydrog WATSON-CRICK B DT 16 B N3 DT 16 1_555 C DA 26 C N1 DA 6 1_555 hydrog WATSON-CRICK B DT 16 B O4 DT 16 1_555 C DA 26 C N6 DA 6 1_555 hydrog WATSON-CRICK B DT 17 B N3 DT 17 1_555 C DA 25 C N1 DA 5 1_555 hydrog WATSON-CRICK B DT 17 B O4 DT 17 1_555 C DA 25 C N6 DA 5 1_555 hydrog WATSON-CRICK B DC 18 B N3 DC 18 1_555 C DG 24 C N1 DG 4 1_555 hydrog WATSON-CRICK B DC 18 B N4 DC 18 1_555 C DG 24 C O6 DG 4 1_555 hydrog WATSON-CRICK B DC 18 B O2 DC 18 1_555 C DG 24 C N2 DG 4 1_555 hydrog WATSON-CRICK B DT 19 B N3 DT 19 1_555 C DA 23 C N1 DA 3 1_555 hydrog WATSON-CRICK B DT 19 B O4 DT 19 1_555 C DA 23 C N6 DA 3 1_555 hydrog WATSON-CRICK B DA 20 B N1 DA 20 1_555 C DT 22 C N3 DT 2 1_555 hydrog WATSON-CRICK B DA 20 B N6 DA 20 1_555 C DT 22 C O4 DT 2 1_555 Transcription regulator water mediated recognition, protein-methylated DNA complex, Asx-ST-motif, Disease mutation, DNA-binding, Nucleus, Phosphoprotein, Repressor, Transcription regulator MECP2_HUMAN UNP 1 77 P51608 ASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFD FTVTGRGSPSR 3C2I PDB 2 1 3C2I TCTGGAACGGAATTCTTCTA 3C2I PDB 3 1 3C2I ATAGAAGAATTCCGTTCCAG 77 167 3C2I 77 167 P51608 A 1 1 91 1 20 3C2I 1 20 3C2I B 2 1 20 21 40 3C2I 21 40 3C2I C 3 1 20 1 ALA engineered mutation MSE 140 3C2I A P51608 UNP 140 64 1 expression tag HIS 168 3C2I A P51608 UNP 92 1 expression tag HIS 169 3C2I A P51608 UNP 93 1 expression tag HIS 170 3C2I A P51608 UNP 94 1 expression tag HIS 171 3C2I A P51608 UNP 95 1 expression tag HIS 172 3C2I A P51608 UNP 96 1 expression tag HIS 173 3C2I A P51608 UNP 97 3 anti-parallel anti-parallel A THR 105 A THR 29 A GLN 110 A GLN 34 A TYR 120 A TYR 44 A ILE 125 A ILE 49 A ALA 131 A ALA 55 A PHE 132 A PHE 56 5 C 1 2 1