0.008319 0.004803 0.000000 0.000000 0.009606 0.000000 0.000000 0.000000 0.005639 0.00000 0.00000 0.00000 Maveyraud, L. Niwa, H. Guillet, V. Palmer, R.A. Reynolds, C.D. Mourey, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 120.204 120.204 177.340 C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C5 H10 O5 150.130 beta-D-xylopyranose beta-D-xylose; D-xylose; xylose D-saccharide, beta linking N 1 N C N 2 N O N 3 N O N 4 N C N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 R C N 82 S C N 83 S C N 84 S C N 85 R C N 86 N C N 87 N O N 88 N O N 89 N O N 90 N O N 91 N O N 92 N O N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 R C N 107 N C N 108 N O N 109 N C N 110 N S N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 R C N 120 S C N 121 R C N 122 S C N 123 S C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N O N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N N N 143 S C N 144 N C N 145 N O N 146 N C N 147 N C N 148 N C N 149 N O N 150 N N N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 N C N 167 N C N 168 N C N 169 N O N 170 N O N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 N C N 183 N C N 184 N O N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C Y 196 N C Y 197 N N Y 198 N C Y 199 N C Y 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N O N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 S C N 220 N C N 221 N C N 222 N C N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N C N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N C N 267 N N N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 S C N 285 S C N 286 S C N 287 S C N 288 R C N 289 N C N 290 N O N 291 N O N 292 N O N 293 N O N 294 N O N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N S N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 R C N 329 R C N 330 R C N 331 S C N 332 R C N 333 N C N 334 N C N 335 N C N 336 N N N 337 N O N 338 N O N 339 N O N 340 N O N 341 N O N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N N N 382 S C N 383 N C N 384 N O N 385 N C N 386 N C N 387 N C N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N S N 413 N O N 414 N O N 415 N O N 416 N O N 417 N N N 418 S C N 419 N C N 420 N O N 421 R C N 422 N O N 423 N C N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 N C Y 439 N C Y 440 N C Y 441 N C Y 442 N N Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N C N 472 N O N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N N N 486 S C N 487 N C N 488 N O N 489 N C N 490 N C N 491 N C N 492 N O N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N O N 505 R C N 506 R C N 507 S C N 508 R C N 509 N C N 510 N O N 511 N O N 512 N O N 513 N O N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing Y 193 N sing Y 194 N doub Y 195 N doub N 196 N sing Y 197 N sing N 198 N sing Y 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N doub N 360 N sing Y 361 N doub N 362 N sing Y 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing US Proteins PSFGEY 0867 0887-3585 75 89 103 10.1002/prot.22222 18798567 Structural basis for sugar recognition, including the Tn carcinoma antigen, by the lectin SNA-II from Sambucus nigra 2009 10.2210/pdb3ca0/pdb pdb_00003ca0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2002-11-08 ADSC QUANTUM 4 Diamond (111), Ge(220) SINGLE WAVELENGTH M x-ray 1 0.937 1.0 ID14-1 ESRF 0.937 SYNCHROTRON ESRF BEAMLINE ID14-1 28439.059 Agglutinin II 1 nat polymer 1189.079 beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 367.349 alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 570.542 alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 96.063 SULFATE ION 7 syn non-polymer 59.044 ACETATE ION 1 syn non-polymer 18.015 water 335 nat water SNA-II no no TSFTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGTQRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVIFNCSTAAENAI KWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAASQGWTVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEA TSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNSDGAIVNPKSRLVMDVRASNVSLREIII FPATGNPNQQWVTQVLPS TSFTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGTQRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVIFNCSTAAENAI KWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAASQGWTVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEA TSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNSDGAIVNPKSRLVMDVRASNVSLREIII FPATGNPNQQWVTQVLPS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n European elder, elderberry sample Sambucus nigra BARK 1 6.52 81.14 VAPOR DIFFUSION, HANGING DROP 4.5 PROTEIN 16 MG/ML, AMMONIUM SULFATE 2.0 M, SODIUM ACETATE 100 mM, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Advisory Version format compliance Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2008-11-25 1 1 2011-07-13 2 0 2020-07-29 2 1 2023-08-30 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession B NAG 1 n B NAG 1 B NAG 2 n B NAG 2 B BMA 3 n B BMA 3 B XYP 7 n B XYP 4 B MAN 4 n B MAN 5 B MAN 6 n B MAN 6 B FUC 5 n B FUC 7 B NAG 11 n C NAG 1 B FUC 15 n C FUC 2 B NAG 21 n D NAG 1 B NAG 22 n D NAG 2 B NAG 31 n E NAG 1 B FUC 35 n E FUC 2 B NAG 32 n E NAG 3 DManpb b-D-mannopyranose b-D-Manp Man LFucpa a-L-fucopyranose a-L-Fucp Fuc DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc DXylpb b-D-xylopyranose b-D-Xylp Xyl Sambucus nigra agglutinin II - tetragonal crystal form Sambucus nigra agglutinin II - tetragonal crystal form - complexed to galactose Sambucus nigra agglutinin II - tetragonal crystal form - complexed to N-acetygalactosamine Sambucus nigra agglutinin II - tetragonal crystal form - complexed to lactose Sambucus nigra agglutinin II - tetragonal crystal form - complexed to methyl-galactose Sambucus nigra agglutinin II - tetragonal crystal form - complexed to Tn antigen Sambucus nigra agglutinin II - tetragonal crystal form - complexed to fucose RCSB Y RCSB 2008-02-19 REL REL oligosaccharide oligosaccharide oligosaccharide oligosaccharide DXylpb1-2[DManpa1-3][DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-3]DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/5,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a1122h-1b_1-5][a212h-1b_1-5][a1122h-1a_1-5]/1-2-1-3-4-5-5/a3-b1_a4-c1_c4-d1_d2-e1_d3-f1_d6-g1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(2+1)][b-D-Xylp]{}[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}} 2 PDB-CARE LINUCS LFucpa1-3DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2/a3-b1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}}} 3 PDB-CARE LINUCS DGlcpNAcb1-4DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 4 PDB-CARE LINUCS LFucpa1-3[DGlcpNAcb1-4]DGlcpNAcb1- 5 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-1/a3-b1_a4-c1 5 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-GlcpNAc]{}}} 5 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 BMA NAG 3 2 2 O1 HO4 sing C1 O2 XYP BMA 4 3 2 O1 HO2 sing C1 O3 MAN BMA 5 3 2 O1 HO3 sing C1 O6 MAN BMA 6 3 2 O1 HO6 sing C1 O3 FUC NAG 7 1 2 O1 HO3 sing C1 O3 FUC NAG 2 1 3 O1 HO3 sing C1 O4 NAG NAG 2 1 4 O1 HO4 sing C1 O3 FUC NAG 2 1 5 O1 HO3 sing C1 O4 NAG NAG 3 1 5 O1 HO4 sing n n n n n n n n n n n n n n SO4 SULFATE ION ACT ACETATE ION HOH water AUTHORS STATE THAT THE ELECTRON DENSITY OF THE STRUCTURE INDICATES CLEARLY THAT THE AMINO ACID AT POSITION 224 IS A LEU AND NOT A HIS. 2AAI chain B of ricin, PDN entry 2AAI PDB experimental model SO4 901 6 SO4 SO4 901 A SO4 902 6 SO4 SO4 902 A SO4 903 6 SO4 SO4 903 A SO4 904 6 SO4 SO4 904 A SO4 905 6 SO4 SO4 905 A SO4 906 6 SO4 SO4 906 A SO4 907 6 SO4 SO4 907 A ACT 910 7 ACT ACT 910 A HOH 1 8 HOH HOH 911 A HOH 2 8 HOH HOH 912 A HOH 3 8 HOH HOH 913 A HOH 4 8 HOH HOH 914 A HOH 6 8 HOH HOH 915 A HOH 7 8 HOH HOH 916 A HOH 8 8 HOH HOH 917 A HOH 9 8 HOH HOH 918 A HOH 10 8 HOH HOH 919 A HOH 11 8 HOH HOH 920 A HOH 12 8 HOH HOH 921 A HOH 13 8 HOH HOH 922 A HOH 14 8 HOH HOH 923 A HOH 15 8 HOH HOH 924 A HOH 16 8 HOH HOH 925 A HOH 17 8 HOH HOH 926 A HOH 18 8 HOH HOH 927 A HOH 19 8 HOH HOH 928 A HOH 20 8 HOH HOH 929 A HOH 21 8 HOH HOH 930 A HOH 22 8 HOH HOH 931 A HOH 23 8 HOH HOH 932 A HOH 24 8 HOH HOH 933 A HOH 25 8 HOH HOH 934 A HOH 26 8 HOH HOH 935 A HOH 27 8 HOH HOH 936 A HOH 28 8 HOH HOH 937 A HOH 29 8 HOH HOH 938 A HOH 30 8 HOH HOH 939 A HOH 31 8 HOH HOH 940 A HOH 32 8 HOH HOH 941 A HOH 33 8 HOH HOH 942 A HOH 34 8 HOH HOH 943 A HOH 35 8 HOH HOH 944 A HOH 36 8 HOH HOH 945 A HOH 37 8 HOH HOH 946 A HOH 38 8 HOH HOH 947 A HOH 39 8 HOH HOH 948 A HOH 40 8 HOH HOH 949 A HOH 41 8 HOH HOH 950 A HOH 42 8 HOH HOH 951 A HOH 43 8 HOH HOH 952 A HOH 44 8 HOH HOH 953 A HOH 45 8 HOH HOH 954 A HOH 46 8 HOH HOH 955 A HOH 47 8 HOH HOH 956 A HOH 48 8 HOH HOH 957 A HOH 49 8 HOH HOH 958 A HOH 50 8 HOH HOH 959 A HOH 51 8 HOH HOH 960 A HOH 52 8 HOH HOH 961 A HOH 53 8 HOH HOH 962 A HOH 54 8 HOH HOH 963 A HOH 55 8 HOH HOH 964 A HOH 56 8 HOH HOH 965 A HOH 57 8 HOH HOH 966 A HOH 58 8 HOH HOH 967 A HOH 59 8 HOH HOH 968 A HOH 60 8 HOH HOH 969 A HOH 61 8 HOH HOH 970 A HOH 62 8 HOH HOH 971 A HOH 63 8 HOH HOH 972 A HOH 64 8 HOH HOH 973 A HOH 65 8 HOH HOH 974 A HOH 66 8 HOH HOH 975 A HOH 67 8 HOH HOH 976 A HOH 68 8 HOH HOH 977 A HOH 69 8 HOH HOH 978 A HOH 70 8 HOH HOH 979 A HOH 71 8 HOH HOH 980 A HOH 72 8 HOH HOH 981 A HOH 73 8 HOH HOH 982 A HOH 74 8 HOH HOH 983 A HOH 75 8 HOH HOH 984 A HOH 76 8 HOH HOH 985 A HOH 77 8 HOH HOH 986 A HOH 78 8 HOH HOH 987 A HOH 79 8 HOH HOH 988 A HOH 80 8 HOH HOH 989 A HOH 81 8 HOH HOH 990 A HOH 82 8 HOH HOH 991 A HOH 83 8 HOH HOH 992 A HOH 84 8 HOH HOH 993 A HOH 85 8 HOH HOH 994 A HOH 86 8 HOH HOH 995 A HOH 87 8 HOH HOH 996 A HOH 88 8 HOH HOH 997 A HOH 89 8 HOH HOH 998 A HOH 90 8 HOH HOH 999 A HOH 91 8 HOH HOH 1000 A HOH 92 8 HOH HOH 1001 A HOH 93 8 HOH HOH 1002 A HOH 94 8 HOH HOH 1003 A HOH 95 8 HOH HOH 1004 A HOH 96 8 HOH HOH 1005 A HOH 97 8 HOH HOH 1006 A HOH 98 8 HOH HOH 1007 A HOH 99 8 HOH HOH 1008 A HOH 100 8 HOH HOH 1009 A HOH 101 8 HOH HOH 1010 A HOH 102 8 HOH HOH 1011 A HOH 103 8 HOH HOH 1012 A HOH 104 8 HOH HOH 1013 A HOH 105 8 HOH HOH 1014 A HOH 106 8 HOH HOH 1015 A HOH 107 8 HOH HOH 1016 A HOH 108 8 HOH HOH 1017 A HOH 109 8 HOH HOH 1018 A HOH 110 8 HOH HOH 1019 A HOH 111 8 HOH HOH 1020 A HOH 112 8 HOH HOH 1021 A HOH 113 8 HOH HOH 1022 A HOH 114 8 HOH HOH 1023 A HOH 115 8 HOH HOH 1024 A HOH 116 8 HOH HOH 1025 A HOH 117 8 HOH HOH 1026 A HOH 118 8 HOH HOH 1027 A HOH 119 8 HOH HOH 1028 A HOH 120 8 HOH HOH 1029 A HOH 121 8 HOH HOH 1030 A HOH 122 8 HOH HOH 1031 A HOH 123 8 HOH HOH 1032 A HOH 124 8 HOH HOH 1033 A HOH 125 8 HOH HOH 1034 A HOH 126 8 HOH HOH 1035 A HOH 127 8 HOH HOH 1036 A HOH 128 8 HOH HOH 1037 A HOH 129 8 HOH HOH 1038 A HOH 130 8 HOH HOH 1039 A HOH 131 8 HOH HOH 1040 A HOH 132 8 HOH HOH 1041 A HOH 133 8 HOH HOH 1042 A HOH 134 8 HOH HOH 1043 A HOH 135 8 HOH HOH 1044 A HOH 136 8 HOH HOH 1045 A HOH 137 8 HOH HOH 1046 A HOH 138 8 HOH HOH 1047 A HOH 139 8 HOH HOH 1048 A HOH 140 8 HOH HOH 1049 A HOH 141 8 HOH HOH 1050 A HOH 142 8 HOH HOH 1051 A HOH 143 8 HOH HOH 1052 A HOH 144 8 HOH HOH 1053 A HOH 145 8 HOH HOH 1054 A HOH 146 8 HOH HOH 1055 A HOH 147 8 HOH HOH 1056 A HOH 148 8 HOH HOH 1057 A HOH 150 8 HOH HOH 1058 A HOH 151 8 HOH HOH 1059 A HOH 152 8 HOH HOH 1060 A HOH 153 8 HOH HOH 1061 A HOH 154 8 HOH HOH 1062 A HOH 155 8 HOH HOH 1063 A HOH 156 8 HOH HOH 1064 A HOH 157 8 HOH HOH 1065 A HOH 158 8 HOH HOH 1066 A HOH 159 8 HOH HOH 1067 A HOH 160 8 HOH HOH 1068 A HOH 161 8 HOH HOH 1069 A HOH 162 8 HOH HOH 1070 A HOH 163 8 HOH HOH 1071 A HOH 164 8 HOH HOH 1072 A HOH 165 8 HOH HOH 1073 A HOH 166 8 HOH HOH 1074 A HOH 167 8 HOH HOH 1075 A HOH 168 8 HOH HOH 1076 A HOH 169 8 HOH HOH 1077 A HOH 170 8 HOH HOH 1078 A HOH 171 8 HOH HOH 1079 A HOH 172 8 HOH HOH 1080 A HOH 173 8 HOH HOH 1081 A HOH 174 8 HOH HOH 1082 A HOH 175 8 HOH HOH 1083 A HOH 176 8 HOH HOH 1084 A HOH 177 8 HOH HOH 1085 A HOH 178 8 HOH HOH 1086 A HOH 179 8 HOH HOH 1087 A HOH 180 8 HOH HOH 1088 A HOH 181 8 HOH HOH 1089 A HOH 182 8 HOH HOH 1090 A HOH 183 8 HOH HOH 1091 A HOH 184 8 HOH HOH 1092 A HOH 185 8 HOH HOH 1093 A HOH 186 8 HOH HOH 1094 A HOH 187 8 HOH HOH 1095 A HOH 188 8 HOH HOH 1096 A HOH 189 8 HOH HOH 1097 A HOH 190 8 HOH HOH 1098 A HOH 191 8 HOH HOH 1099 A HOH 192 8 HOH HOH 1100 A HOH 193 8 HOH HOH 1101 A HOH 194 8 HOH HOH 1102 A HOH 195 8 HOH HOH 1103 A HOH 196 8 HOH HOH 1104 A HOH 197 8 HOH HOH 1105 A HOH 198 8 HOH HOH 1106 A HOH 199 8 HOH HOH 1107 A HOH 200 8 HOH HOH 1108 A HOH 201 8 HOH HOH 1109 A HOH 202 8 HOH HOH 1110 A HOH 203 8 HOH HOH 1111 A HOH 204 8 HOH HOH 1112 A HOH 205 8 HOH HOH 1113 A HOH 206 8 HOH HOH 1114 A HOH 207 8 HOH HOH 1115 A HOH 208 8 HOH HOH 1116 A HOH 209 8 HOH HOH 1117 A HOH 210 8 HOH HOH 1118 A HOH 212 8 HOH HOH 1119 A HOH 213 8 HOH HOH 1120 A HOH 214 8 HOH HOH 1121 A HOH 215 8 HOH HOH 1122 A HOH 216 8 HOH HOH 1123 A HOH 217 8 HOH HOH 1124 A HOH 218 8 HOH HOH 1125 A HOH 219 8 HOH HOH 1126 A HOH 220 8 HOH HOH 1127 A HOH 221 8 HOH HOH 1128 A HOH 222 8 HOH HOH 1129 A HOH 223 8 HOH HOH 1130 A HOH 224 8 HOH HOH 1131 A HOH 225 8 HOH HOH 1132 A HOH 226 8 HOH HOH 1133 A HOH 227 8 HOH HOH 1134 A HOH 228 8 HOH HOH 1135 A HOH 229 8 HOH HOH 1136 A HOH 230 8 HOH HOH 1137 A HOH 231 8 HOH HOH 1138 A HOH 232 8 HOH HOH 1139 A HOH 233 8 HOH HOH 1140 A HOH 234 8 HOH HOH 1141 A HOH 235 8 HOH HOH 1142 A HOH 236 8 HOH HOH 1143 A HOH 237 8 HOH HOH 1144 A HOH 238 8 HOH HOH 1145 A HOH 239 8 HOH HOH 1146 A HOH 240 8 HOH HOH 1147 A HOH 241 8 HOH HOH 1148 A HOH 242 8 HOH HOH 1149 A HOH 243 8 HOH HOH 1150 A HOH 244 8 HOH HOH 1151 A HOH 245 8 HOH HOH 1152 A HOH 246 8 HOH HOH 1153 A HOH 247 8 HOH HOH 1154 A HOH 248 8 HOH HOH 1155 A HOH 249 8 HOH HOH 1156 A HOH 250 8 HOH HOH 1157 A HOH 251 8 HOH HOH 1158 A HOH 252 8 HOH HOH 1159 A HOH 253 8 HOH HOH 1160 A HOH 254 8 HOH HOH 1161 A HOH 255 8 HOH HOH 1162 A HOH 256 8 HOH HOH 1163 A HOH 257 8 HOH HOH 1164 A HOH 258 8 HOH HOH 1165 A HOH 259 8 HOH HOH 1166 A HOH 260 8 HOH HOH 1167 A HOH 261 8 HOH HOH 1168 A HOH 262 8 HOH HOH 1169 A HOH 263 8 HOH HOH 1170 A HOH 264 8 HOH HOH 1171 A HOH 265 8 HOH HOH 1172 A HOH 266 8 HOH HOH 1173 A HOH 267 8 HOH HOH 1174 A HOH 268 8 HOH HOH 1175 A HOH 269 8 HOH HOH 1176 A HOH 270 8 HOH HOH 1177 A HOH 271 8 HOH HOH 1178 A HOH 272 8 HOH HOH 1179 A HOH 273 8 HOH HOH 1180 A HOH 274 8 HOH HOH 1181 A HOH 275 8 HOH HOH 1182 A HOH 276 8 HOH HOH 1183 A HOH 278 8 HOH HOH 1184 A HOH 279 8 HOH HOH 1185 A HOH 280 8 HOH HOH 1186 A HOH 281 8 HOH HOH 1187 A HOH 282 8 HOH HOH 1188 A HOH 284 8 HOH HOH 1189 A HOH 285 8 HOH HOH 1190 A HOH 286 8 HOH HOH 1191 A HOH 287 8 HOH HOH 1192 A HOH 288 8 HOH HOH 1193 A HOH 289 8 HOH HOH 1194 A HOH 290 8 HOH HOH 1195 A HOH 291 8 HOH HOH 1196 A HOH 292 8 HOH HOH 1197 A HOH 293 8 HOH HOH 1198 A HOH 294 8 HOH HOH 1199 A HOH 295 8 HOH HOH 1200 A HOH 297 8 HOH HOH 1201 A HOH 298 8 HOH HOH 1202 A HOH 299 8 HOH HOH 1203 A HOH 300 8 HOH HOH 1204 A HOH 301 8 HOH HOH 1205 A HOH 302 8 HOH HOH 1206 A HOH 303 8 HOH HOH 1207 A HOH 304 8 HOH HOH 1208 A HOH 305 8 HOH HOH 1209 A HOH 306 8 HOH HOH 1210 A HOH 308 8 HOH HOH 1211 A HOH 309 8 HOH HOH 1212 A HOH 310 8 HOH HOH 1213 A HOH 311 8 HOH HOH 1214 A HOH 312 8 HOH HOH 1215 A HOH 313 8 HOH HOH 1216 A HOH 314 8 HOH HOH 1217 A HOH 315 8 HOH HOH 1218 A HOH 316 8 HOH HOH 1219 A HOH 317 8 HOH HOH 1220 A HOH 318 8 HOH HOH 1221 A HOH 319 8 HOH HOH 1222 A HOH 320 8 HOH HOH 1223 A HOH 321 8 HOH HOH 1224 A HOH 322 8 HOH HOH 1225 A HOH 323 8 HOH HOH 1226 A HOH 324 8 HOH HOH 1227 A HOH 325 8 HOH HOH 1228 A HOH 326 8 HOH HOH 1229 A HOH 327 8 HOH HOH 1230 A HOH 328 8 HOH HOH 1231 A HOH 329 8 HOH HOH 1232 A HOH 330 8 HOH HOH 1233 A HOH 331 8 HOH HOH 1234 A HOH 332 8 HOH HOH 1235 A HOH 333 8 HOH HOH 1236 A HOH 334 8 HOH HOH 1237 A HOH 335 8 HOH HOH 1238 A HOH 336 8 HOH HOH 1239 A HOH 337 8 HOH HOH 1240 A HOH 338 8 HOH HOH 1241 A HOH 339 8 HOH HOH 1242 A HOH 340 8 HOH HOH 1243 A HOH 341 8 HOH HOH 1244 A HOH 342 8 HOH HOH 1245 A THR 1 n 1 THR 1 A SER 2 n 2 SER 2 A PHE 3 n 3 PHE 3 A THR 4 n 4 THR 4 A ARG 5 n 5 ARG 5 A ASN 6 n 6 ASN 6 A ILE 7 n 7 ILE 7 A VAL 8 n 8 VAL 8 A GLY 9 n 9 GLY 9 A ARG 10 n 10 ARG 10 A ASP 11 n 11 ASP 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A CYS 14 n 14 CYS 14 A VAL 15 n 15 VAL 15 A ASP 16 n 16 ASP 16 A VAL 17 n 17 VAL 17 A ARG 18 n 18 ARG 18 A ASN 19 n 19 ASN 19 A GLY 20 n 20 GLY 20 A TYR 21 n 21 TYR 21 A ASP 22 n 22 ASP 22 A THR 23 n 23 THR 23 A ASP 24 n 24 ASP 24 A GLY 25 n 25 GLY 25 A THR 26 n 26 THR 26 A PRO 27 n 27 PRO 27 A LEU 28 n 28 LEU 28 A GLN 29 n 29 GLN 29 A LEU 30 n 30 LEU 30 A TRP 31 n 31 TRP 31 A PRO 32 n 32 PRO 32 A CYS 33 n 33 CYS 33 A GLY 34 n 34 GLY 34 A THR 35 n 35 THR 35 A GLN 36 n 36 GLN 36 A ARG 37 n 37 ARG 37 A ASN 38 n 38 ASN 38 A GLN 39 n 39 GLN 39 A ARG 40 n 40 ARG 40 A TRP 41 n 41 TRP 41 A THR 42 n 42 THR 42 A PHE 43 n 43 PHE 43 A ASP 44 n 44 ASP 44 A SER 45 n 45 SER 45 A ASP 46 n 46 ASP 46 A ASP 47 n 47 ASP 47 A THR 48 n 48 THR 48 A ILE 49 n 49 ILE 49 A ARG 50 n 50 ARG 50 A SER 51 n 51 SER 51 A MET 52 n 52 MET 52 A GLY 53 n 53 GLY 53 A LYS 54 n 54 LYS 54 A CYS 55 n 55 CYS 55 A MET 56 n 56 MET 56 A THR 57 n 57 THR 57 A ALA 58 n 58 ALA 58 A ASN 59 n 59 ASN 59 A GLY 60 n 60 GLY 60 A LEU 61 n 61 LEU 61 A ASN 62 n 62 ASN 62 A ASN 63 n 63 ASN 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A ASN 66 n 66 ASN 66 A ILE 67 n 67 ILE 67 A VAL 68 n 68 VAL 68 A ILE 69 n 69 ILE 69 A PHE 70 n 70 PHE 70 A ASN 71 n 71 ASN 71 A CYS 72 n 72 CYS 72 A SER 73 n 73 SER 73 A THR 74 n 74 THR 74 A ALA 75 n 75 ALA 75 A ALA 76 n 76 ALA 76 A GLU 77 n 77 GLU 77 A ASN 78 n 78 ASN 78 A ALA 79 n 79 ALA 79 A ILE 80 n 80 ILE 80 A LYS 81 n 81 LYS 81 A TRP 82 n 82 TRP 82 A GLU 83 n 83 GLU 83 A VAL 84 n 84 VAL 84 A PRO 85 n 85 PRO 85 A ILE 86 n 86 ILE 86 A ASP 87 n 87 ASP 87 A GLY 88 n 88 GLY 88 A SER 89 n 89 SER 89 A ILE 90 n 90 ILE 90 A ILE 91 n 91 ILE 91 A ASN 92 n 92 ASN 92 A PRO 93 n 93 PRO 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A GLY 96 n 96 GLY 96 A LEU 97 n 97 LEU 97 A VAL 98 n 98 VAL 98 A MET 99 n 99 MET 99 A THR 100 n 100 THR 100 A ALA 101 n 101 ALA 101 A PRO 102 n 102 PRO 102 A ARG 103 n 103 ARG 103 A ALA 104 n 104 ALA 104 A ALA 105 n 105 ALA 105 A SER 106 n 106 SER 106 A ARG 107 n 107 ARG 107 A THR 108 n 108 THR 108 A ILE 109 n 109 ILE 109 A LEU 110 n 110 LEU 110 A LEU 111 n 111 LEU 111 A LEU 112 n 112 LEU 112 A GLU 113 n 113 GLU 113 A ASP 114 n 114 ASP 114 A ASN 115 n 115 ASN 115 A ILE 116 n 116 ILE 116 A TYR 117 n 117 TYR 117 A ALA 118 n 118 ALA 118 A ALA 119 n 119 ALA 119 A SER 120 n 120 SER 120 A GLN 121 n 121 GLN 121 A GLY 122 n 122 GLY 122 A TRP 123 n 123 TRP 123 A THR 124 n 124 THR 124 A VAL 125 n 125 VAL 125 A THR 126 n 126 THR 126 A ASN 127 n 127 ASN 127 A ASN 128 n 128 ASN 128 A VAL 129 n 129 VAL 129 A LYS 130 n 130 LYS 130 A PRO 131 n 131 PRO 131 A ILE 132 n 132 ILE 132 A VAL 133 n 133 VAL 133 A ALA 134 n 134 ALA 134 A SER 135 n 135 SER 135 A ILE 136 n 136 ILE 136 A VAL 137 n 137 VAL 137 A GLY 138 n 138 GLY 138 A TYR 139 n 139 TYR 139 A LYS 140 n 140 LYS 140 A GLU 141 n 141 GLU 141 A MET 142 n 142 MET 142 A CYS 143 n 143 CYS 143 A LEU 144 n 144 LEU 144 A GLN 145 n 145 GLN 145 A SER 146 n 146 SER 146 A ASN 147 n 147 ASN 147 A GLY 148 n 148 GLY 148 A GLU 149 n 149 GLU 149 A ASN 150 n 150 ASN 150 A ASN 151 n 151 ASN 151 A GLY 152 n 152 GLY 152 A VAL 153 n 153 VAL 153 A TRP 154 n 154 TRP 154 A MET 155 n 155 MET 155 A GLU 156 n 156 GLU 156 A ASP 157 n 157 ASP 157 A CYS 158 n 158 CYS 158 A GLU 159 n 159 GLU 159 A ALA 160 n 160 ALA 160 A THR 161 n 161 THR 161 A SER 162 n 162 SER 162 A LEU 163 n 163 LEU 163 A GLN 164 n 164 GLN 164 A GLN 165 n 165 GLN 165 A GLN 166 n 166 GLN 166 A TRP 167 n 167 TRP 167 A ALA 168 n 168 ALA 168 A LEU 169 n 169 LEU 169 A TYR 170 n 170 TYR 170 A GLY 171 n 171 GLY 171 A ASP 172 n 172 ASP 172 A ARG 173 n 173 ARG 173 A THR 174 n 174 THR 174 A ILE 175 n 175 ILE 175 A ARG 176 n 176 ARG 176 A VAL 177 n 177 VAL 177 A ASN 178 n 178 ASN 178 A SER 179 n 179 SER 179 A THR 180 n 180 THR 180 A ARG 181 n 181 ARG 181 A GLY 182 n 182 GLY 182 A LEU 183 n 183 LEU 183 A CYS 184 n 184 CYS 184 A VAL 185 n 185 VAL 185 A THR 186 n 186 THR 186 A THR 187 n 187 THR 187 A ASN 188 n 188 ASN 188 A GLY 189 n 189 GLY 189 A TYR 190 n 190 TYR 190 A ASN 191 n 191 ASN 191 A SER 192 n 192 SER 192 A LYS 193 n 193 LYS 193 A ASP 194 n 194 ASP 194 A LEU 195 n 195 LEU 195 A ILE 196 n 196 ILE 196 A ILE 197 n 197 ILE 197 A ILE 198 n 198 ILE 198 A LEU 199 n 199 LEU 199 A LYS 200 n 200 LYS 200 A CYS 201 n 201 CYS 201 A GLN 202 n 202 GLN 202 A GLY 203 n 203 GLY 203 A LEU 204 n 204 LEU 204 A PRO 205 n 205 PRO 205 A SER 206 n 206 SER 206 A GLN 207 n 207 GLN 207 A ARG 208 n 208 ARG 208 A TRP 209 n 209 TRP 209 A PHE 210 n 210 PHE 210 A PHE 211 n 211 PHE 211 A ASN 212 n 212 ASN 212 A SER 213 n 213 SER 213 A ASP 214 n 214 ASP 214 A GLY 215 n 215 GLY 215 A ALA 216 n 216 ALA 216 A ILE 217 n 217 ILE 217 A VAL 218 n 218 VAL 218 A ASN 219 n 219 ASN 219 A PRO 220 n 220 PRO 220 A LYS 221 n 221 LYS 221 A SER 222 n 222 SER 222 A ARG 223 n 223 ARG 223 A LEU 224 n 224 LEU 224 A VAL 225 n 225 VAL 225 A MET 226 n 226 MET 226 A ASP 227 n 227 ASP 227 A VAL 228 n 228 VAL 228 A ARG 229 n 229 ARG 229 A ALA 230 n 230 ALA 230 A SER 231 n 231 SER 231 A ASN 232 n 232 ASN 232 A VAL 233 n 233 VAL 233 A SER 234 n 234 SER 234 A LEU 235 n 235 LEU 235 A ARG 236 n 236 ARG 236 A GLU 237 n 237 GLU 237 A ILE 238 n 238 ILE 238 A ILE 239 n 239 ILE 239 A ILE 240 n 240 ILE 240 A PHE 241 n 241 PHE 241 A PRO 242 n 242 PRO 242 A ALA 243 n 243 ALA 243 A THR 244 n 244 THR 244 A GLY 245 n 245 GLY 245 A ASN 246 n 246 ASN 246 A PRO 247 n 247 PRO 247 A ASN 248 n 248 ASN 248 A GLN 249 n 249 GLN 249 A GLN 250 n 250 GLN 250 A TRP 251 n 251 TRP 251 A VAL 252 n 252 VAL 252 A THR 253 n 253 THR 253 A GLN 254 n 254 GLN 254 A VAL 255 n 255 VAL 255 A LEU 256 n 256 LEU 256 A PRO 257 n 257 PRO 257 A n 258 258 A 1.9133 0.5446 0.1744 1.1980 0.2593 1.7421 0.0244 -0.1053 -0.1334 0.1103 -0.0267 0.0309 0.1650 -0.0398 0.0023 -0.2885 0.0133 -0.0268 -0.1246 0.0104 -0.1965 refined 6.4440 45.1509 11.1775 X-RAY DIFFRACTION 2.4262 -0.2415 0.1947 1.6397 1.0588 2.6493 -0.0341 0.0540 0.2397 -0.0018 0.0610 0.0192 -0.3039 0.1021 -0.0269 -0.2241 0.0150 0.0053 -0.1487 0.0340 -0.2036 refined 22.7805 67.6192 16.5410 X-RAY DIFFRACTION A 1 A 1 A 129 A 129 X-RAY DIFFRACTION 1 A 130 A 130 A 257 A 257 X-RAY DIFFRACTION 2 author_defined_assembly 1 monomeric A ASN 63 GLYCOSYLATION SITE A ASN 63 ASN A ASN 71 GLYCOSYLATION SITE A ASN 71 ASN A ASN 178 GLYCOSYLATION SITE A ASN 178 ASN A ASN 232 GLYCOSYLATION SITE A ASN 232 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 98 A N VAL 98 A O GLU 113 A O GLU 113 A O LEU 112 A O LEU 112 A N SER 65 A N SER 65 A O PHE 70 A O PHE 70 A N CYS 55 A N CYS 55 A O MET 56 A O MET 56 A N ILE 49 A N ILE 49 A O ARG 50 A O ARG 50 A N THR 42 A N THR 42 A O PHE 43 A O PHE 43 A N PHE 3 A N PHE 3 A N VAL 8 A N VAL 8 A O THR 124 A O THR 124 A N CYS 14 A N CYS 14 A O TRP 31 A O TRP 31 A O ILE 197 A O ILE 197 A N THR 186 A N THR 186 A O VAL 185 A O VAL 185 A N ILE 175 A N ILE 175 A O ARG 176 A O ARG 176 A N ALA 168 A N ALA 168 A O LEU 169 A O LEU 169 A N ILE 132 A N ILE 132 A N VAL 137 A N VAL 137 A O VAL 252 A O VAL 252 A N CYS 143 A N CYS 143 A O GLU 156 A O GLU 156 A N PHE 210 A N PHE 210 A O VAL 218 A O VAL 218 A N VAL 225 A N VAL 225 A O PHE 241 A O PHE 241 1 A HOH 911 N HOH 1 A HOH 912 N HOH 1 A HOH 913 N HOH 1 A HOH 1244 N HOH 1 A CD LYS 130 A CD LYS 130 1 Y 1 A CE LYS 130 A CE LYS 130 1 Y 1 A NZ LYS 130 A NZ LYS 130 1 Y 1 A CD1 ILE 132 A CD1 ILE 132 1 Y 1 A SER 258 A SER 258 1 Y 1 -5.59 0.90 118.30 112.71 A A A CB CG OD1 ASP ASP ASP 87 87 87 N 1 6.30 0.90 118.30 124.60 A A A CB CG OD2 ASP ASP ASP 87 87 87 N 1 -4.04 0.50 120.30 116.26 A A A NE CZ NH1 ARG ARG ARG 103 103 103 A A A N 1 A A CB CG ASN ASN 128 128 0.139 0.023 1.506 1.645 N 1 A ARG 107 79.87 -1.71 1 A LYS 193 80.04 1.01 1 A ARG 223 74.05 -4.13 41.658 0.78 0.39 0.00 0.78 0.00 -1.16 0.964 0.953 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.19412 0.17146 0.17259 0.17259 1.95 20.00 2762 52296 52296 5.0 99.03 3.696 0.059 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.085 0.086 0.80 0.80 1.20 chain B of ricin, PDN entry 2AAI MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.95 20.00 335 2524 209 0 1980 0.021 0.021 2289 0.003 0.020 1473 1.907 2.039 3153 1.369 3.005 3546 7.444 5.000 268 36.937 24.688 96 12.748 15.000 338 18.639 15.000 16 0.131 0.200 385 0.008 0.020 2409 0.001 0.020 411 0.205 0.200 373 0.216 0.200 1606 0.167 0.200 1143 0.113 0.200 1175 0.156 0.200 219 0.127 0.200 8 0.393 0.200 42 0.199 0.200 29 1.323 1.500 1668 0.310 1.500 534 1.696 2.000 2140 3.052 3.000 1103 4.648 4.500 1013 0.225 0.216 2.000 181 3455 20 90.27 29.5 1.90 51.30 3CA0 57308 57308 0 0 0.083 0.083 1 13.7 5.0 95.5 0.324 1.90 2.00 2.1 5977 0.324 1 2.1 70.0 refinement REFMAC 5.2.0019 data collection DNA data reduction MOSFLM data scaling SCALA phasing MOLREP N Sambucus nigra agglutinin II (SNA-II), hexagonal crystal form 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N 7 N N 8 N N A GLY 9 A GLY 9 HELX_P A LEU 13 A LEU 13 5 1 5 A ASN 19 A ASN 19 HELX_P A TYR 21 A TYR 21 5 2 3 A GLN 36 A GLN 36 HELX_P A ARG 40 A ARG 40 5 3 5 A ALA 76 A ALA 76 HELX_P A LYS 81 A LYS 81 1 4 6 A ALA 118 A ALA 118 HELX_P A GLY 122 A GLY 122 5 5 5 A GLY 138 A GLY 138 HELX_P A MET 142 A MET 142 5 6 5 A SER 162 A SER 162 HELX_P A GLN 165 A GLN 165 5 7 4 A LEU 204 A LEU 204 HELX_P A ARG 208 A ARG 208 5 8 5 A ALA 230 A ALA 230 HELX_P A ARG 236 A ARG 236 5 9 7 A ASN 246 A ASN 246 HELX_P A GLN 250 A GLN 250 5 10 5 disulf 2.136 A CYS 14 A SG CYS 14 1_555 A CYS 33 A SG CYS 33 1_555 disulf 2.117 A CYS 55 A SG CYS 55 1_555 A CYS 72 A SG CYS 72 1_555 disulf 2.145 A CYS 143 A SG CYS 143 1_555 A CYS 158 A SG CYS 158 1_555 disulf 2.097 A CYS 184 A SG CYS 184 1_555 A CYS 201 A SG CYS 201 1_555 covale 1.445 one N-Glycosylation A ASN 63 A ND2 ASN 63 1_555 B NAG 1 B C1 NAG 1_555 covale 1.468 one N-Glycosylation A ASN 71 A ND2 ASN 71 1_555 C NAG 1 C C1 NAG 1_555 covale 1.484 one N-Glycosylation A ASN 178 A ND2 ASN 178 1_555 D NAG 1 D C1 NAG 1_555 covale 1.457 one N-Glycosylation A ASN 232 A ND2 ASN 232 1_555 E NAG 1 E C1 NAG 1_555 covale 1.410 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.483 both B NAG 1 B O3 NAG 1_555 B FUC 7 B C1 FUC 1_555 covale 1.409 both B NAG 2 B O4 NAG 1_555 B BMA 3 B C1 BMA 1_555 covale 1.446 both B BMA 3 B O2 BMA 1_555 B XYP 4 B C1 XYP 1_555 covale 1.438 both B BMA 3 B O3 BMA 1_555 B MAN 5 B C1 MAN 1_555 covale 1.439 both B BMA 3 B O6 BMA 1_555 B MAN 6 B C1 MAN 1_555 covale 1.451 both C NAG 1 C O3 NAG 1_555 C FUC 2 C C1 FUC 1_555 covale 1.459 both D NAG 1 D O4 NAG 1_555 D NAG 2 D C1 NAG 1_555 covale 1.456 both E NAG 1 E O3 NAG 1_555 E FUC 2 E C1 FUC 1_555 covale 1.442 both E NAG 1 E O4 NAG 1_555 E NAG 3 E C1 NAG 1_555 SUGAR BINDING PROTEIN, Plant protein BETA-TREFOIL, RICIN-B DOMAIN, GLYCOSYLATION, Glycoprotein, Lectin, SUGAR BINDING PROTEIN, Plant protein NIGB_SAMNI UNP 1 306 P33183 TSFTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGTQRNQRWTFDSDDTIRSMGKCMTANGLNNGSNIVIFNCSTAAENAI KWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAASQGWTVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEA TSLQQQWALYGDRTIRVNSTRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNSDGAIVNPKSRHVMDVRASNVSLREIII FPATGNPNQQWVTQVLPS 306 563 3CA0 1 258 P33183 A 1 1 258 1 HIS SEE REMARK 999 LEU 224 3CA0 A P33183 UNP 529 224 8 2 6 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 98 A VAL 98 A THR 100 A THR 100 A LEU 111 A LEU 111 A GLU 113 A GLU 113 A SER 65 A SER 65 A PHE 70 A PHE 70 A LYS 54 A LYS 54 A ALA 58 A ALA 58 A ILE 49 A ILE 49 A SER 51 A SER 51 A TRP 41 A TRP 41 A ASP 44 A ASP 44 A SER 2 A SER 2 A VAL 8 A VAL 8 A THR 124 A THR 124 A THR 126 A THR 126 A CYS 14 A CYS 14 A VAL 17 A VAL 17 A LEU 28 A LEU 28 A TRP 31 A TRP 31 A ILE 196 A ILE 196 A LYS 200 A LYS 200 A THR 180 A THR 180 A THR 187 A THR 187 A ILE 175 A ILE 175 A VAL 177 A VAL 177 A TRP 167 A TRP 167 A LEU 169 A LEU 169 A ILE 132 A ILE 132 A VAL 137 A VAL 137 A VAL 252 A VAL 252 A VAL 255 A VAL 255 A CYS 143 A CYS 143 A GLN 145 A GLN 145 A TRP 154 A TRP 154 A GLU 156 A GLU 156 A PHE 210 A PHE 210 A PHE 211 A PHE 211 A ILE 217 A ILE 217 A VAL 218 A VAL 218 A VAL 225 A VAL 225 A VAL 228 A VAL 228 A ILE 238 A ILE 238 A PHE 241 A PHE 241 181 P 64 2 2