0.023529 0.000000 0.000000 0.000000 0.012516 0.000000 0.000000 0.000000 0.026817 0.000000 0.000000 0.000000 Guo, F. Dakshinamurthy, R. Kathir, K.M. Thallapuranam, S.K.K. Sakon, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 42.500 79.900 37.290 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal structure analysis of the hFGFR2 D2 domain 298 1 CCD 2006-10-27 RIGAKU SATURN 944 SINGLE WAVELENGTH x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 11608.258 Fibroblast growth factor receptor 2 2.7.10.1 Ig-like C2-type 2 1 man polymer 18.015 water 54 nat water FGFR-2, Keratinocyte growth factor receptor 2, CD332 antigen no no NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY TCVVENEYGSINHTYHLDVV NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY TCVVENEYGSINHTYHLDVV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample FGFR2, BEK, KGFR, KSAM 9606 Homo sapiens 562 Escherichia coli 1 2.73 54.90 VAPOR DIFFUSION, HANGING DROP 7.5 20%(w/v) PEG3350, 0.1M (NH3)2SO4, 100mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Advisory Version format compliance 1 0 2009-01-27 1 1 2011-07-13 RCSB Y RCSB 2008-02-19 REL REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 5 2 HOH HOH 5 A HOH 6 2 HOH HOH 6 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A 1.960 1.960 16.760 16.760 Phaser MODE: MR_AUTO ASN 150 n 1 ASN 150 A LYS 151 n 2 LYS 151 A ARG 152 n 3 ARG 152 A ALA 153 n 4 ALA 153 A PRO 154 n 5 PRO 154 A TYR 155 n 6 TYR 155 A TRP 156 n 7 TRP 156 A THR 157 n 8 THR 157 A ASN 158 n 9 ASN 158 A THR 159 n 10 THR 159 A GLU 160 n 11 GLU 160 A LYS 161 n 12 LYS 161 A MET 162 n 13 MET 162 A GLU 163 n 14 GLU 163 A LYS 164 n 15 LYS 164 A ARG 165 n 16 ARG 165 A LEU 166 n 17 LEU 166 A HIS 167 n 18 HIS 167 A ALA 168 n 19 ALA 168 A VAL 169 n 20 VAL 169 A PRO 170 n 21 PRO 170 A ALA 171 n 22 ALA 171 A ALA 172 n 23 ALA 172 A ASN 173 n 24 ASN 173 A THR 174 n 25 THR 174 A VAL 175 n 26 VAL 175 A LYS 176 n 27 LYS 176 A PHE 177 n 28 PHE 177 A ARG 178 n 29 ARG 178 A CYS 179 n 30 CYS 179 A PRO 180 n 31 PRO 180 A ALA 181 n 32 ALA 181 A GLY 182 n 33 GLY 182 A GLY 183 n 34 GLY 183 A ASN 184 n 35 ASN 184 A PRO 185 n 36 PRO 185 A MET 186 n 37 MET 186 A PRO 187 n 38 PRO 187 A THR 188 n 39 THR 188 A MET 189 n 40 MET 189 A ARG 190 n 41 ARG 190 A TRP 191 n 42 TRP 191 A LEU 192 n 43 LEU 192 A LYS 193 n 44 LYS 193 A ASN 194 n 45 ASN 194 A GLY 195 n 46 GLY 195 A LYS 196 n 47 LYS 196 A GLU 197 n 48 GLU 197 A PHE 198 n 49 PHE 198 A LYS 199 n 50 LYS 199 A GLN 200 n 51 GLN 200 A GLU 201 n 52 GLU 201 A HIS 202 n 53 HIS 202 A ARG 203 n 54 ARG 203 A ILE 204 n 55 ILE 204 A GLY 205 n 56 GLY 205 A GLY 206 n 57 GLY 206 A TYR 207 n 58 TYR 207 A LYS 208 n 59 LYS 208 A VAL 209 n 60 VAL 209 A ARG 210 n 61 ARG 210 A ASN 211 n 62 ASN 211 A GLN 212 n 63 GLN 212 A HIS 213 n 64 HIS 213 A TRP 214 n 65 TRP 214 A SER 215 n 66 SER 215 A LEU 216 n 67 LEU 216 A ILE 217 n 68 ILE 217 A MET 218 n 69 MET 218 A GLU 219 n 70 GLU 219 A SER 220 n 71 SER 220 A VAL 221 n 72 VAL 221 A VAL 222 n 73 VAL 222 A PRO 223 n 74 PRO 223 A SER 224 n 75 SER 224 A ASP 225 n 76 ASP 225 A LYS 226 n 77 LYS 226 A GLY 227 n 78 GLY 227 A ASN 228 n 79 ASN 228 A TYR 229 n 80 TYR 229 A THR 230 n 81 THR 230 A CYS 231 n 82 CYS 231 A VAL 232 n 83 VAL 232 A VAL 233 n 84 VAL 233 A GLU 234 n 85 GLU 234 A ASN 235 n 86 ASN 235 A GLU 236 n 87 GLU 236 A TYR 237 n 88 TYR 237 A GLY 238 n 89 GLY 238 A SER 239 n 90 SER 239 A ILE 240 n 91 ILE 240 A ASN 241 n 92 ASN 241 A HIS 242 n 93 HIS 242 A THR 243 n 94 THR 243 A TYR 244 n 95 TYR 244 A HIS 245 n 96 HIS 245 A LEU 246 n 97 LEU 246 A ASP 247 n 98 ASP 247 A VAL 248 n 99 VAL 248 A VAL 249 n 100 VAL 249 A 24.1225 17.0004 5.7085 52.8457 5.4481 9.4146 0.5463 -0.8995 -1.2297 1.6243 0.0639 -1.3500 1.3493 0.2244 -0.6102 0.0492 0.0022 -0.0457 -0.0259 0.0711 0.1165 refined 5.2000 -5.9670 12.5850 X-RAY DIFFRACTION 39.2963 0.3962 -1.4182 19.5315 -9.3904 4.5531 0.1252 -3.6624 0.7664 2.6566 -0.4747 -0.4251 -0.9062 0.4995 0.3496 0.3859 -0.1245 -0.0061 0.2168 -0.0438 0.0608 refined 3.8930 7.1700 17.9480 X-RAY DIFFRACTION 32.2457 0.0000 0.0000 86.6898 0.0000 0.0000 -0.9710 -2.5009 -0.5137 3.3823 1.6259 0.9132 -1.9795 -0.4485 -0.6549 0.5482 -0.0790 0.1078 0.1349 -0.0817 0.1733 refined 1.7620 14.9960 16.4470 X-RAY DIFFRACTION 16.0395 -1.5331 -8.8378 3.1162 -1.4874 6.7012 1.1358 -1.0918 0.3949 0.9271 -0.4074 -0.3371 -0.4373 -0.0197 -0.7285 0.1166 -0.0701 0.0061 0.0990 -0.1890 0.2068 refined 8.1330 27.1360 11.6870 X-RAY DIFFRACTION 32.1352 31.7047 -2.4550 59.5039 -0.1592 0.3690 1.1663 -2.6007 -1.0441 2.6263 -1.1568 -1.7466 -0.1444 0.4731 -0.0096 0.0700 -0.0132 -0.0113 0.1648 -0.0976 -0.1324 refined 11.6690 17.9990 12.7640 X-RAY DIFFRACTION 0.0003 0.0479 0.0280 7.6968 4.5030 2.6345 0.0696 -0.5181 -0.7677 1.0911 -0.2290 -2.0155 -0.2037 0.3909 0.1593 0.0374 -0.0078 -0.1263 0.0292 0.0546 0.1802 refined 10.1280 0.4350 10.2370 X-RAY DIFFRACTION 22.7035 -7.4508 0.0000 21.2986 0.0000 19.9769 -0.0083 0.4999 -1.1964 -1.1527 -0.5154 -0.4975 0.3630 0.3631 0.5237 -0.1435 -0.0454 -0.0236 -0.1830 -0.0399 -0.2358 refined 8.2920 12.2490 1.7480 X-RAY DIFFRACTION 61.7832 7.9214 8.1771 24.5742 4.5756 13.0605 0.3749 2.5646 -1.6802 -0.5272 0.1192 -0.2536 0.2252 0.9415 -0.4941 -0.1516 -0.0115 0.0050 -0.0425 -0.0139 -0.1655 refined 7.4700 15.0820 -2.8760 X-RAY DIFFRACTION 15.7015 3.3712 -3.1946 26.4986 7.4532 19.0498 -0.3305 1.5601 -0.3196 -1.0276 0.6638 -0.3899 0.3202 -0.3711 -0.3333 -0.1450 -0.0483 0.0441 0.0299 -0.0538 0.1382 refined 16.5700 19.5610 -2.4670 X-RAY DIFFRACTION 13.6918 3.9409 0.0000 59.7734 0.0000 34.2849 0.5614 -0.2768 -0.9314 3.2053 -2.3878 -3.5828 -1.2510 2.6397 1.8264 0.1919 -0.0807 -0.0539 0.0211 -0.1084 0.2841 refined 18.0870 14.6360 6.6880 X-RAY DIFFRACTION 29.6461 3.4503 0.0000 39.1544 0.0000 20.5093 -0.5915 -1.4585 -0.5559 0.3094 0.6650 -5.6206 -0.3786 2.4446 -0.0736 0.0660 -0.0208 -0.1308 0.3060 0.0021 0.3857 refined 15.6300 6.8080 12.7980 X-RAY DIFFRACTION 2.0123 0.9790 0.5656 10.2495 -9.2434 9.6174 0.2013 -0.1359 0.6206 0.1423 -0.2909 -0.8052 0.1787 0.2629 0.0897 -0.0976 -0.0246 -0.0127 -0.0672 -0.0647 0.1752 refined 13.7680 23.1690 6.0960 X-RAY DIFFRACTION 12.1366 1.0988 0.3466 3.6490 -0.3575 8.2933 -0.1362 -0.1021 1.1547 0.1644 0.0612 0.0018 -0.1562 0.0066 0.0751 -0.2107 -0.0226 0.0138 -0.1411 -0.0491 -0.1714 refined 5.0740 16.9240 3.7680 X-RAY DIFFRACTION 17.1732 12.3414 2.7647 79.6545 15.7516 19.6268 0.4040 0.1301 -0.9522 -0.9213 -0.0364 -0.2065 0.3837 0.2838 -0.3675 -0.2315 0.0540 -0.0769 -0.1434 -0.0143 -0.0291 refined 6.0320 -3.8120 4.8210 X-RAY DIFFRACTION 6.4306 1.0479 -4.5581 32.3671 0.0000 0.0000 0.2251 -0.3117 -0.5480 -0.0416 -0.3910 1.0258 -0.2816 -0.0164 0.1660 -0.1567 -0.0518 0.0312 -0.1510 -0.0397 0.0059 refined 1.5980 6.9100 6.8180 X-RAY DIFFRACTION 16.1526 9.7132 -1.7891 19.1841 -9.6548 8.8031 0.5350 -0.3559 1.5846 0.9890 -0.4554 2.2534 -0.5878 0.1411 -0.0797 -0.0857 -0.0248 0.1104 -0.0695 -0.1083 0.0273 refined 4.3930 24.3590 8.1790 X-RAY DIFFRACTION A 150 A 1 A 155 A 6 X-RAY DIFFRACTION 1 A 156 A 7 A 160 A 11 X-RAY DIFFRACTION 2 A 161 A 12 A 165 A 16 X-RAY DIFFRACTION 3 A 166 A 17 A 173 A 24 X-RAY DIFFRACTION 4 A 174 A 25 A 178 A 29 X-RAY DIFFRACTION 5 A 179 A 30 A 189 A 40 X-RAY DIFFRACTION 6 A 190 A 41 A 193 A 44 X-RAY DIFFRACTION 7 A 194 A 45 A 198 A 49 X-RAY DIFFRACTION 8 A 199 A 50 A 205 A 56 X-RAY DIFFRACTION 9 A 206 A 57 A 210 A 61 X-RAY DIFFRACTION 10 A 211 A 62 A 214 A 65 X-RAY DIFFRACTION 11 A 215 A 66 A 225 A 76 X-RAY DIFFRACTION 12 A 226 A 77 A 232 A 83 X-RAY DIFFRACTION 13 A 233 A 84 A 237 A 88 X-RAY DIFFRACTION 14 A 238 A 89 A 243 A 94 X-RAY DIFFRACTION 15 A 244 A 95 A 249 A 100 X-RAY DIFFRACTION 16 author_defined_assembly 2 dimeric software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 152 A N ARG 3 A O ASN 184 A O ASN 35 A N VAL 169 A N VAL 20 A O ASP 247 A O ASP 98 A O LEU 246 A O LEU 97 A N GLY 227 A N GLY 78 A O VAL 232 A O VAL 83 A N ARG 190 A N ARG 41 A N LYS 193 A N LYS 44 A O LYS 196 A O LYS 47 A N PHE 177 A N PHE 28 A O LEU 216 A O LEU 67 A O ILE 217 A O ILE 68 A N LYS 208 A N LYS 59 1 A HOH 26 B HOH 1 A A OE2 O GLU HOH 163 14 2.02 1 A A CD1 O TYR HOH 237 36 2.04 1 A A CZ OH TYR TYR 207 207 -0.144 0.017 1.374 1.230 N 1 A A CZ CE2 TYR TYR 207 207 -0.103 0.013 1.381 1.278 N 1 A A CZ CE2 TYR TYR 229 229 0.081 0.013 1.381 1.462 N 1 A A CD1 CE1 TYR TYR 244 244 0.108 0.015 1.389 1.497 N 1 A A CB CG2 VAL VAL 248 248 0.148 0.021 1.524 1.672 N 1 A ALA 172 78.56 -9.46 1 A SER 220 43.83 70.62 18.551 0.000 0.000 0.000 0.000 0.000 0.000 0.969 0.924 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.275 0.187 0.191 1.960 16.760 416 8479 4.900 88.660 12.770 0.163 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.169 0.187 0.800 0.800 1.200 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.960 16.760 54 868 0 0 814 0.032 0.021 838 2.082 1.921 1134 2.654 5.000 99 26.958 23.415 41 11.785 15.000 145 8.509 15.000 6 0.181 0.200 115 0.011 0.020 644 0.269 0.200 338 0.331 0.200 555 0.182 0.200 52 0.174 0.200 16 0.206 0.200 4 24.764 2.000 515 23.374 3.000 807 2.000 381 87.486 3.000 327 0.446 0.276 2.011 6 169 175 20 25.770 1.960 16.760 3CAF 9401 0.048 0.980 1 14.400 3.390 242 98.100 0.386 1.96 2.03 1.9 1747 785 1.120 1 2.22 84.90 0.366 2.03 2.11 2.4 2541 901 1.020 1 2.81 96.80 0.308 2.11 2.21 3.3 3298 948 1.060 1 3.46 99.80 0.240 2.21 2.32 3.9 3445 943 1.000 1 3.63 99.80 0.197 2.32 2.47 4.9 3393 935 0.950 1 3.60 99.90 0.150 2.47 2.66 6.3 3524 964 0.900 1 3.63 100.00 0.096 2.66 2.92 9.9 3443 938 0.910 1 3.66 99.70 0.057 2.92 3.34 15.8 3535 970 0.860 1 3.64 100.00 0.031 3.34 4.20 32.6 3580 979 0.980 1 3.61 99.80 0.021 4.20 16.76 51.7 3587 1038 1.140 1 3.39 99.70 data scaling Pflugrath, J.W. jwp@RigakuMSC.com Nov 2 2004 http://www.msc.com/protein/dtrek.html d*TREK package 9.2SSI phasing R. J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 data collection CrystalClear data reduction CrystalClear data scaling CrystalClear Crystal Structure of hFGFR2 D2 Domain Crystal Structure of hFGFR2 D2 Domain 1 N N 2 N N A LYS 199 A LYS 50 HELX_P A ARG 203 A ARG 54 5 1 5 A ASN 211 A ASN 62 HELX_P A HIS 213 A HIS 64 5 2 3 A VAL 222 A VAL 73 HELX_P A LYS 226 A LYS 77 5 3 5 disulf 2.013 A CYS 179 A SG CYS 30 1_555 A CYS 231 A SG CYS 82 1_555 TRANSFERASE FGFR2, D2, Fibroblast Growth Factor, ATP-binding, Disease mutation, Ectodermal dysplasia, Glycoprotein, Heparin-binding, Immunoglobulin domain, Kinase, Lacrimo-auriculo-dento-digital syndrome, Membrane, Nucleotide-binding, Phosphoprotein, Receptor, Secreted, Transferase, Transmembrane, Tyrosine-protein kinase A ASN 184 A ASN 35 1 A PRO 185 A PRO 36 1.82 FGFR2_HUMAN UNP 1 150 P21802 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY TCVVENEYGSINHTYHLDVV 150 249 3CAF 150 249 P21802 A 1 1 100 2 5 3 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 152 A ARG 3 A TRP 156 A TRP 7 A ALA 181 A ALA 32 A ASN 184 A ASN 35 A LEU 166 A LEU 17 A PRO 170 A PRO 21 A GLY 238 A GLY 89 A VAL 249 A VAL 100 A GLY 227 A GLY 78 A ASN 235 A ASN 86 A THR 188 A THR 39 A LYS 193 A LYS 44 A LYS 196 A LYS 47 A GLU 197 A GLU 48 A VAL 175 A VAL 26 A ARG 178 A ARG 29 A SER 215 A SER 66 A MET 218 A MET 69 A LYS 208 A LYS 59 A ARG 210 A ARG 61 18 P 21 21 2