26.18
-5.374
14.292
-1.809
A
O3'
DT
1001
ATOM
A
O3'
DT
1
1
0.50
1
O
28.97
-6.667
14.102
-0.887
A
P
DA
1002
ATOM
A
P
DA
1
2
0.70
1
P
25.45
-6.328
14.428
0.517
A
OP1
DA
1002
ATOM
A
OP1
DA
1
2
0.70
1
O
23.57
-7.351
12.894
-1.364
A
OP2
DA
1002
ATOM
A
OP2
DA
1
2
0.70
1
O
28.73
-7.661
15.228
-1.343
A
O5'
DA
1002
ATOM
A
O5'
DA
1
2
1.00
1
O
26.12
-7.535
16.629
-1.087
A
C5'
DA
1002
ATOM
A
C5'
DA
1
2
1.00
1
C
22.51
-8.709
17.356
-1.732
A
C4'
DA
1002
ATOM
A
C4'
DA
1
2
1.00
1
C
24.32
-8.448
17.463
-3.141
A
O4'
DA
1002
ATOM
A
O4'
DA
1
2
1.00
1
O
21.42
-10.061
16.681
-1.743
A
C3'
DA
1002
ATOM
A
C3'
DA
1
2
1.00
1
C
20.68
-11.152
17.673
-1.795
A
O3'
DA
1002
ATOM
A
O3'
DA
1
2
1.00
1
O
23.35
-9.902
15.751
-2.957
A
C2'
DA
1002
ATOM
A
C2'
DA
1
2
1.00
1
C
23.74
-9.328
16.728
-3.949
A
C1'
DA
1002
ATOM
A
C1'
DA
1
2
1.00
1
C
25.18
-8.477
16.143
-4.959
A
N9
DA
1002
ATOM
A
N9
DA
1
2
1.00
1
N
26.43
-7.865
14.926
-4.914
A
C8
DA
1002
ATOM
A
C8
DA
1
2
1.00
1
C
28.09
-7.109
14.671
-5.953
A
N7
DA
1002
ATOM
A
N7
DA
1
2
1.00
1
N
29.09
-7.227
15.797
-6.751
A
C5
DA
1002
ATOM
A
C5
DA
1
2
1.00
1
C
29.18
-6.683
16.176
-8.009
A
C6
DA
1002
ATOM
A
C6
DA
1
2
1.00
1
C
26.09
-5.860
15.414
-8.717
A
N6
DA
1002
ATOM
A
N6
DA
1
2
1.00
1
N
28.65
-7.000
17.382
-8.532
A
N1
DA
1002
ATOM
A
N1
DA
1
2
1.00
1
N
29.21
-7.828
18.155
-7.841
A
C2
DA
1002
ATOM
A
C2
DA
1
2
1.00
1
C
30.51
-8.392
17.921
-6.649
A
N3
DA
1002
ATOM
A
N3
DA
1
2
1.00
1
N
27.95
-8.062
16.719
-6.142
A
C4
DA
1002
ATOM
A
C4
DA
1
2
1.00
1
C
18.64
-12.699
17.306
-1.668
A
P
DG
1003
ATOM
A
P
DG
1
3
1.00
1
P
22.62
-12.871
16.311
-0.614
A
OP1
DG
1003
ATOM
A
OP1
DG
1
3
1.00
1
O
21.06
-13.326
17.182
-3.005
A
OP2
DG
1003
ATOM
A
OP2
DG
1
3
1.00
1
O
17.86
-13.292
18.619
-1.098
A
O5'
DG
1003
ATOM
A
O5'
DG
1
3
1.00
1
O
17.38
-13.111
18.864
0.242
A
C5'
DG
1003
ATOM
A
C5'
DG
1
3
1.00
1
C
14.85
-14.210
19.739
0.778
A
C4'
DG
1003
ATOM
A
C4'
DG
1
3
1.00
1
C
17.04
-14.176
20.942
0.009
A
O4'
DG
1003
ATOM
A
O4'
DG
1
3
1.00
1
O
15.93
-15.586
19.150
0.642
A
C3'
DG
1003
ATOM
A
C3'
DG
1
3
1.00
1
C
18.45
-16.385
19.612
1.767
A
O3'
DG
1003
ATOM
A
O3'
DG
1
3
1.00
1
O
14.49
-16.035
19.871
-0.654
A
C2'
DG
1003
ATOM
A
C2'
DG
1
3
1.00
1
C
12.85
-15.401
21.259
-0.579
A
C1'
DG
1003
ATOM
A
C1'
DG
1
3
1.00
1
C
9.71
-15.355
21.784
-1.952
A
N9
DG
1003
ATOM
A
N9
DG
1
3
1.00
1
N
7.13
-14.966
21.093
-3.110
A
C8
DG
1003
ATOM
A
C8
DG
1
3
1.00
1
C
9.65
-15.105
21.763
-4.211
A
N7
DG
1003
ATOM
A
N7
DG
1
3
1.00
1
N
7.06
-15.617
22.943
-3.743
A
C5
DG
1003
ATOM
A
C5
DG
1
3
1.00
1
C
7.83
-15.975
24.075
-4.398
A
C6
DG
1003
ATOM
A
C6
DG
1
3
1.00
1
C
14.25
-15.920
24.321
-5.565
A
O6
DG
1003
ATOM
A
O6
DG
1
3
1.00
1
O
7.32
-16.460
25.118
-3.651
A
N1
DG
1003
ATOM
A
N1
DG
1
3
1.00
1
N
5.50
-16.547
25.083
-2.273
A
C2
DG
1003
ATOM
A
C2
DG
1
3
1.00
1
C
7.33
-17.024
26.175
-1.654
A
N2
DG
1003
ATOM
A
N2
DG
1
3
1.00
1
N
5.92
-16.214
24.029
-1.617
A
N3
DG
1003
ATOM
A
N3
DG
1
3
1.00
1
N
5.55
-15.755
22.998
-2.373
A
C4
DG
1003
ATOM
A
C4
DG
1
3
1.00
1
C
17.29
-17.943
19.179
1.916
A
P
DG
1004
ATOM
A
P
DG
1
4
1.00
1
P
21.49
-18.004
18.449
3.168
A
OP1
DG
1004
ATOM
A
OP1
DG
1
4
1.00
1
O
17.36
-18.444
18.470
0.731
A
OP2
DG
1004
ATOM
A
OP2
DG
1
4
1.00
1
O
12.85
-18.647
20.536
2.030
A
O5'
DG
1004
ATOM
A
O5'
DG
1
4
1.00
1
O
15.48
-18.079
21.581
2.721
A
C5'
DG
1004
ATOM
A
C5'
DG
1
4
1.00
1
C
13.30
-18.975
22.793
2.682
A
C4'
DG
1004
ATOM
A
C4'
DG
1
4
1.00
1
C
13.49
-18.609
23.532
1.526
A
O4'
DG
1004
ATOM
A
O4'
DG
1
4
1.00
1
O
16.11
-20.476
22.634
2.501
A
C3'
DG
1004
ATOM
A
C3'
DG
1
4
1.00
1
C
21.40
-21.134
22.745
3.756
A
O3'
DG
1004
ATOM
A
O3'
DG
1
4
1.00
1
O
7.61
-20.925
23.922
1.850
A
C2'
DG
1004
ATOM
A
C2'
DG
1
4
1.00
1
C
12.75
-19.768
24.110
0.888
A
C1'
DG
1004
ATOM
A
C1'
DG
1
4
1.00
1
C
8.63
-19.668
23.627
-0.532
A
N9
DG
1004
ATOM
A
N9
DG
1
4
1.00
1
N
7.32
-19.157
22.405
-0.956
A
C8
DG
1004
ATOM
A
C8
DG
1
4
1.00
1
C
4.94
-19.096
22.297
-2.258
A
N7
DG
1004
ATOM
A
N7
DG
1
4
1.00
1
N
2.65
-19.613
23.545
-2.649
A
C5
DG
1004
ATOM
A
C5
DG
1
4
1.00
1
C
6.47
-19.772
24.062
-3.944
A
C6
DG
1004
ATOM
A
C6
DG
1
4
1.00
1
C
7.97
-19.442
23.460
-4.922
A
O6
DG
1004
ATOM
A
O6
DG
1
4
1.00
1
O
2.26
-20.277
25.341
-4.041
A
N1
DG
1004
ATOM
A
N1
DG
1
4
1.00
1
N
3.15
-20.652
26.048
-2.936
A
C2
DG
1004
ATOM
A
C2
DG
1
4
1.00
1
C
7.79
-21.175
27.257
-3.123
A
N2
DG
1004
ATOM
A
N2
DG
1
4
1.00
1
N
4.70
-20.470
25.614
-1.700
A
N3
DG
1004
ATOM
A
N3
DG
1
4
1.00
1
N
3.47
-19.949
24.354
-1.640
A
C4
DG
1004
ATOM
A
C4
DG
1
4
1.00
1
C
18.21
-22.451
21.891
3.973
A
P
DG
1005
ATOM
A
P
DG
1
5
1.00
1
P
25.57
-22.698
22.182
5.391
A
OP1
DG
1005
ATOM
A
OP1
DG
1
5
1.00
1
O
15.84
-22.142
20.535
3.535
A
OP2
DG
1005
ATOM
A
OP2
DG
1
5
1.00
1
O
16.99
-23.600
22.600
3.180
A
O5'
DG
1005
ATOM
A
O5'
DG
1
5
1.00
1
O
19.09
-23.988
23.825
3.710
A
C5'
DG
1005
ATOM
A
C5'
DG
1
5
1.00
1
C
21.58
-24.730
24.596
2.656
A
C4'
DG
1005
ATOM
A
C4'
DG
1
5
1.00
1
C
21.76
-23.905
24.745
1.451
A
O4'
DG
1005
ATOM
A
O4'
DG
1
5
1.00
1
O
23.65
-25.988
23.859
2.271
A
C3'
DG
1005
ATOM
A
C3'
DG
1
5
1.00
1
C
24.91
-27.148
24.688
2.420
A
O3'
DG
1005
ATOM
A
O3'
DG
1
5
1.00
1
O
22.42
-25.720
23.313
0.851
A
C2'
DG
1005
ATOM
A
C2'
DG
1
5
1.00
1
C
19.12
-24.666
24.289
0.336
A
C1'
DG
1005
ATOM
A
C1'
DG
1
5
1.00
1
C
12.43
-23.998
23.706
-0.797
A
N9
DG
1005
ATOM
A
N9
DG
1
5
1.00
1
N
11.34
-23.314
22.522
-0.823
A
C8
DG
1005
ATOM
A
C8
DG
1
5
1.00
1
C
9.19
-22.870
22.260
-2.024
A
N7
DG
1005
ATOM
A
N7
DG
1
5
1.00
1
N
6.19
-23.292
23.332
-2.802
A
C5
DG
1005
ATOM
A
C5
DG
1
5
1.00
1
C
4.81
-23.100
23.520
-4.187
A
C6
DG
1005
ATOM
A
C6
DG
1
5
1.00
1
C
11.16
-22.470
22.737
-4.837
A
O6
DG
1005
ATOM
A
O6
DG
1
5
1.00
1
O
3.31
-23.615
24.636
-4.700
A
N1
DG
1005
ATOM
A
N1
DG
1
5
1.00
1
N
6.90
-24.299
25.508
-3.899
A
C2
DG
1005
ATOM
A
C2
DG
1
5
1.00
1
C
8.57
-24.774
26.590
-4.467
A
N2
DG
1005
ATOM
A
N2
DG
1
5
1.00
1
N
10.16
-24.494
25.390
-2.589
A
N3
DG
1005
ATOM
A
N3
DG
1
5
1.00
1
N
9.64
-23.965
24.235
-2.090
A
C4
DG
1005
ATOM
A
C4
DG
1
5
1.00
1
C
23.51
-28.498
23.983
3.026
A
P
DT
1006
ATOM
A
P
DT
1
6
1.00
1
P
15.12
-28.580
22.576
2.585
A
OP1
DT
1006
ATOM
A
OP1
DT
1
6
1.00
1
O
25.10
-29.598
24.921
2.863
A
OP2
DT
1006
ATOM
A
OP2
DT
1
6
1.00
1
O
24.67
-28.136
23.857
4.557
A
O5'
DT
1006
ATOM
A
O5'
DT
1
6
1.00
1
O
27.49
-27.743
24.997
5.304
A
C5'
DT
1006
ATOM
A
C5'
DT
1
6
1.00
1
C
26.60
-28.107
24.748
6.770
A
C4'
DT
1006
ATOM
A
C4'
DT
1
6
1.00
1
C
25.69
-29.496
24.327
6.883
A
O4'
DT
1006
ATOM
A
O4'
DT
1
6
1.00
1
O
25.42
-27.294
23.638
7.365
A
C3'
DT
1006
ATOM
A
C3'
DT
1
6
1.00
1
C
25.26
-26.976
24.129
8.642
A
O3'
DT
1006
ATOM
A
O3'
DT
1
6
1.00
1
O
21.30
-28.201
22.408
7.364
A
C2'
DT
1006
ATOM
A
C2'
DT
1
6
1.00
1
C
21.28
-29.578
23.054
7.454
A
C1'
DT
1006
ATOM
A
C1'
DT
1
6
1.00
1
C
20.86
-30.609
22.163
6.878
A
N1
DT
1006
ATOM
A
N1
DT
1
6
1.00
1
N
21.09
-31.419
21.438
7.747
A
C2
DT
1006
ATOM
A
C2
DT
1
6
1.00
1
C
19.79
-31.418
21.518
8.969
A
O2
DT
1006
ATOM
A
O2
DT
1
6
1.00
1
O
17.15
-32.264
20.591
7.143
A
N3
DT
1006
ATOM
A
N3
DT
1
6
1.00
1
N
16.38
-32.401
20.383
5.806
A
C4
DT
1006
ATOM
A
C4
DT
1
6
1.00
1
C
17.42
-33.224
19.568
5.454
A
O4
DT
1006
ATOM
A
O4
DT
1
6
1.00
1
O
18.77
-31.525
21.129
4.929
A
C5
DT
1006
ATOM
A
C5
DT
1
6
1.00
1
C
19.67
-31.418
20.913
3.435
A
C7
DT
1006
ATOM
A
C7
DT
1
6
1.00
1
C
22.17
-30.685
21.971
5.523
A
C6
DT
1006
ATOM
A
C6
DT
1
6
1.00
1
C
26.97
-25.615
23.714
9.377
A
P
DT
1007
ATOM
A
P
DT
1
7
1.00
1
P
23.29
-25.057
22.369
9.187
A
OP1
DT
1007
ATOM
A
OP1
DT
1
7
1.00
1
O
27.53
-25.862
24.350
10.687
A
OP2
DT
1007
ATOM
A
OP2
DT
1
7
1.00
1
O
23.92
-24.563
24.593
8.625
A
O5'
DT
1007
ATOM
A
O5'
DT
1
7
1.00
1
O
22.10
-23.280
24.791
9.086
A
C5'
DT
1007
ATOM
A
C5'
DT
1
7
1.00
1
C
20.82
-22.826
26.060
8.386
A
C4'
DT
1007
ATOM
A
C4'
DT
1
7
1.00
1
C
25.03
-21.427
26.155
8.685
A
O4'
DT
1007
ATOM
A
O4'
DT
1
7
1.00
1
O
19.37
-22.911
26.016
6.844
A
C3'
DT
1007
ATOM
A
C3'
DT
1
7
1.00
1
C
20.31
-23.040
27.343
6.387
A
O3'
DT
1007
ATOM
A
O3'
DT
1
7
1.00
1
O
18.27
-21.572
25.399
6.478
A
C2'
DT
1007
ATOM
A
C2'
DT
1
7
1.00
1
C
20.68
-20.710
26.201
7.478
A
C1'
DT
1007
ATOM
A
C1'
DT
1
7
1.00
1
C
17.09
-19.329
25.762
7.674
A
N1
DT
1007
ATOM
A
N1
DT
1
7
1.00
1
N
14.67
-18.378
26.723
7.817
A
C2
DT
1007
ATOM
A
C2
DT
1
7
1.00
1
C
18.95
-18.682
27.861
7.787
A
O2
DT
1007
ATOM
A
O2
DT
1
7
1.00
1
O
11.38
-17.099
26.319
7.973
A
N3
DT
1007
ATOM
A
N3
DT
1
7
1.00
1
N
13.08
-16.716
25.002
7.988
A
C4
DT
1007
ATOM
A
C4
DT
1
7
1.00
1
C
14.92
-15.533
24.665
8.098
A
O4
DT
1007
ATOM
A
O4
DT
1
7
1.00
1
O
14.22
-17.766
24.017
7.857
A
C5
DT
1007
ATOM
A
C5
DT
1
7
1.00
1
C
13.87
-17.455
22.553
7.867
A
C7
DT
1007
ATOM
A
C7
DT
1
7
1.00
1
C
16.96
-19.002
24.430
7.677
A
C6
DT
1007
ATOM
A
C6
DT
1
7
1.00
1
C
19.60
-23.969
27.698
5.178
A
P
DA
1008
ATOM
A
P
DA
1
8
1.00
1
P
18.83
-24.191
29.102
5.039
A
OP1
DA
1008
ATOM
A
OP1
DA
1
8
1.00
1
O
23.17
-25.144
26.802
5.243
A
OP2
DA
1008
ATOM
A
OP2
DA
1
8
1.00
1
O
20.60
-23.041
27.175
3.980
A
O5'
DA
1008
ATOM
A
O5'
DA
1
8
1.00
1
O
18.93
-22.140
28.107
3.257
A
C5'
DA
1008
ATOM
A
C5'
DA
1
8
1.00
1
C
15.05
-20.853
28.399
4.010
A
C4'
DA
1008
ATOM
A
C4'
DA
1
8
1.00
1
C
18.46
-20.001
27.230
4.068
A
O4'
DA
1008
ATOM
A
O4'
DA
1
8
1.00
1
O
16.11
-19.991
29.391
3.319
A
C3'
DA
1008
ATOM
A
C3'
DA
1
8
1.00
1
C
16.44
-20.605
30.634
3.557
A
O3'
DA
1008
ATOM
A
O3'
DA
1
8
1.00
1
O
14.30
-18.684
29.120
4.059
A
C2'
DA
1008
ATOM
A
C2'
DA
1
8
1.00
1
C
16.78
-18.663
27.631
4.317
A
C1'
DA
1008
ATOM
A
C1'
DA
1
8
1.00
1
C
13.64
-17.873
26.836
3.401
A
N9
DA
1008
ATOM
A
N9
DA
1
8
1.00
1
N
12.66
-17.890
27.040
2.053
A
C8
DA
1008
ATOM
A
C8
DA
1
8
1.00
1
C
10.96
-17.132
26.222
1.380
A
N7
DA
1008
ATOM
A
N7
DA
1
8
1.00
1
N
13.29
-16.563
25.404
2.349
A
C5
DA
1008
ATOM
A
C5
DA
1
8
1.00
1
C
12.28
-15.662
24.332
2.273
A
C6
DA
1008
ATOM
A
C6
DA
1
8
1.00
1
C
14.83
-15.145
23.851
1.154
A
N6
DA
1008
ATOM
A
N6
DA
1
8
1.00
1
N
15.45
-15.249
23.738
3.425
A
N1
DA
1008
ATOM
A
N1
DA
1
8
1.00
1
N
11.17
-15.751
24.218
4.604
A
C2
DA
1008
ATOM
A
C2
DA
1
8
1.00
1
C
13.50
-16.615
25.186
4.784
A
N3
DA
1008
ATOM
A
N3
DA
1
8
1.00
1
N
13.33
-17.012
25.758
3.614
A
C4
DA
1008
ATOM
A
C4
DA
1
8
1.00
1
C
23.57
-20.074
32.007
3.043
A
P
DG
1009
ATOM
A
P
DG
1
9
1.00
1
P
22.77
-18.764
32.339
3.651
A
OP1
DG
1009
ATOM
A
OP1
DG
1
9
1.00
1
O
15.74
-21.235
32.845
3.003
A
OP2
DG
1009
ATOM
A
OP2
DG
1
9
1.00
1
O
23.39
-19.765
31.643
1.492
A
O5'
DG
1009
ATOM
A
O5'
DG
1
9
1.00
1
O
19.43
-20.910
31.506
0.645
A
C5'
DG
1009
ATOM
A
C5'
DG
1
9
1.00
1
C
14.05
-20.769
32.234
-0.637
A
C4'
DG
1009
ATOM
A
C4'
DG
1
9
1.00
1
C
17.40
-19.498
31.912
-1.226
A
O4'
DG
1009
ATOM
A
O4'
DG
1
9
1.00
1
O
16.02
-21.751
31.650
-1.621
A
C3'
DG
1009
ATOM
A
C3'
DG
1
9
1.00
1
C
16.05
-22.963
32.341
-1.408
A
O3'
DG
1009
ATOM
A
O3'
DG
1
9
1.00
1
O
12.60
-21.093
32.055
-2.928
A
C2'
DG
1009
ATOM
A
C2'
DG
1
9
1.00
1
C
9.69
-19.621
31.842
-2.647
A
C1'
DG
1009
ATOM
A
C1'
DG
1
9
1.00
1
C
8.64
-19.065
30.563
-3.041
A
N9
DG
1009
ATOM
A
N9
DG
1
9
1.00
1
N
6.05
-18.477
29.663
-2.187
A
C8
DG
1009
ATOM
A
C8
DG
1
9
1.00
1
C
5.14
-18.059
28.628
-2.787
A
N7
DG
1009
ATOM
A
N7
DG
1
9
1.00
1
N
5.67
-18.338
28.891
-4.147
A
C5
DG
1009
ATOM
A
C5
DG
1
9
1.00
1
C
7.97
-18.134
28.156
-5.360
A
C6
DG
1009
ATOM
A
C6
DG
1
9
1.00
1
C
8.79
-17.591
27.051
-5.533
A
O6
DG
1009
ATOM
A
O6
DG
1
9
1.00
1
O
9.08
-18.598
28.788
-6.535
A
N1
DG
1009
ATOM
A
N1
DG
1
9
1.00
1
N
7.19
-19.225
29.975
-6.531
A
C2
DG
1009
ATOM
A
C2
DG
1
9
1.00
1
C
10.27
-19.644
30.527
-7.667
A
N2
DG
1009
ATOM
A
N2
DG
1
9
1.00
1
N
9.91
-19.394
30.648
-5.441
A
N3
DG
1009
ATOM
A
N3
DG
1
9
1.00
1
N
4.53
-18.960
30.043
-4.309
A
C4
DG
1009
ATOM
A
C4
DG
1
9
1.00
1
C
20.14
-24.343
31.829
-1.952
A
P
DG
1010
ATOM
A
P
DG
1
10
1.00
1
P
18.26
-25.238
32.869
-1.546
A
OP1
DG
1010
ATOM
A
OP1
DG
1
10
1.00
1
O
17.28
-24.555
30.371
-1.655
A
OP2
DG
1010
ATOM
A
OP2
DG
1
10
1.00
1
O
19.49
-24.153
31.956
-3.532
A
O5'
DG
1010
ATOM
A
O5'
DG
1
10
1.00
1
O
18.06
-24.397
33.162
-4.261
A
C5'
DG
1010
ATOM
A
C5'
DG
1
10
1.00
1
C
18.79
-24.549
32.811
-5.751
A
C4'
DG
1010
ATOM
A
C4'
DG
1
10
1.00
1
C
18.78
-23.309
32.211
-6.223
A
O4'
DG
1010
ATOM
A
O4'
DG
1
10
1.00
1
O
20.11
-25.571
31.718
-6.063
A
C3'
DG
1010
ATOM
A
C3'
DG
1
10
1.00
1
C
24.34
-26.906
32.234
-6.093
A
O3'
DG
1010
ATOM
A
O3'
DG
1
10
1.00
1
O
18.44
-25.149
31.240
-7.433
A
C2'
DG
1010
ATOM
A
C2'
DG
1
10
1.00
1
C
16.25
-23.634
31.349
-7.303
A
C1'
DG
1010
ATOM
A
C1'
DG
1
10
1.00
1
C
11.41
-22.993
30.146
-6.908
A
N9
DG
1010
ATOM
A
N9
DG
1
10
1.00
1
N
11.64
-22.694
29.856
-5.631
A
C8
DG
1010
ATOM
A
C8
DG
1
10
1.00
1
C
9.31
-22.130
28.718
-5.475
A
N7
DG
1010
ATOM
A
N7
DG
1
10
1.00
1
N
8.64
-22.004
28.266
-6.746
A
C5
DG
1010
ATOM
A
C5
DG
1
10
1.00
1
C
7.14
-21.412
27.125
-7.225
A
C6
DG
1010
ATOM
A
C6
DG
1
10
1.00
1
C
12.12
-20.837
26.215
-6.686
A
O6
DG
1010
ATOM
A
O6
DG
1
10
1.00
1
O
10.70
-21.504
27.018
-8.610
A
N1
DG
1010
ATOM
A
N1
DG
1
10
1.00
1
N
9.83
-22.067
27.920
-9.451
A
C2
DG
1010
ATOM
A
C2
DG
1
10
1.00
1
C
15.97
-22.041
27.566
-10.749
A
N2
DG
1010
ATOM
A
N2
DG
1
10
1.00
1
N
11.05
-22.635
29.007
-9.042
A
N3
DG
1010
ATOM
A
N3
DG
1
10
1.00
1
N
11.33
-22.590
29.099
-7.668
A
C4
DG
1010
ATOM
A
C4
DG
1
10
1.00
1
C
25.39
-28.126
31.252
-6.036
A
P
DG
1011
ATOM
A
P
DG
1
11
1.00
1
P
26.44
-29.292
32.111
-5.852
A
OP1
DG
1011
ATOM
A
OP1
DG
1
11
1.00
1
O
27.28
-27.837
30.030
-5.259
A
OP2
DG
1011
ATOM
A
OP2
DG
1
11
1.00
1
O
30.14
-28.175
30.638
-7.490
A
O5'
DG
1011
ATOM
A
O5'
DG
1
11
1.00
1
O
25.86
-28.564
31.412
-8.629
A
C5'
DG
1011
ATOM
A
C5'
DG
1
11
1.00
1
C
25.23
-28.510
30.459
-9.808
A
C4'
DG
1011
ATOM
A
C4'
DG
1
11
1.00
1
C
22.61
-27.245
29.750
-10.005
A
O4'
DG
1011
ATOM
A
O4'
DG
1
11
1.00
1
O
26.66
-29.545
29.389
-9.786
A
C3'
DG
1011
ATOM
A
C3'
DG
1
11
1.00
1
C
35.04
-29.948
29.466
-11.094
A
O3'
DG
1011
ATOM
A
O3'
DG
1
11
1.00
1
O
21.39
-28.779
28.094
-9.599
A
C2'
DG
1011
ATOM
A
C2'
DG
1
11
1.00
1
C
18.86
-27.375
28.358
-10.082
A
C1'
DG
1011
ATOM
A
C1'
DG
1
11
1.00
1
C
15.19
-26.459
27.631
-9.202
A
N9
DG
1011
ATOM
A
N9
DG
1
11
1.00
1
N
12.73
-26.341
27.788
-7.835
A
C8
DG
1011
ATOM
A
C8
DG
1
11
1.00
1
C
9.41
-25.525
26.984
-7.247
A
N7
DG
1011
ATOM
A
N7
DG
1
11
1.00
1
N
10.80
-25.049
26.217
-8.305
A
C5
DG
1011
ATOM
A
C5
DG
1
11
1.00
1
C
12.35
-24.104
25.202
-8.310
A
C6
DG
1011
ATOM
A
C6
DG
1
11
1.00
1
C
17.67
-23.410
24.627
-7.382
A
O6
DG
1011
ATOM
A
O6
DG
1
11
1.00
1
O
13.32
-23.981
24.727
-9.628
A
N1
DG
1011
ATOM
A
N1
DG
1
11
1.00
1
N
12.47
-24.599
25.191
-10.773
A
C2
DG
1011
ATOM
A
C2
DG
1
11
1.00
1
C
11.74
-24.271
24.614
-11.955
A
N2
DG
1011
ATOM
A
N2
DG
1
11
1.00
1
N
10.95
-25.462
26.166
-10.747
A
N3
DG
1011
ATOM
A
N3
DG
1
11
1.00
1
N
9.57
-25.632
26.612
-9.500
A
C4
DG
1011
ATOM
A
C4
DG
1
11
1.00
1
C
36.44
-31.460
29.526
-11.551
A
P
DT
1012
ATOM
A
P
DT
1
12
1.00
1
P
37.86
-32.065
30.765
-11.009
A
OP1
DT
1012
ATOM
A
OP1
DT
1
12
1.00
1
O
35.58
-32.064
28.213
-11.270
A
OP2
DT
1012
ATOM
A
OP2
DT
1
12
1.00
1
O
34.69
-31.141
29.732
-13.102
A
O5'
DT
1012
ATOM
A
O5'
DT
1
12
1.00
1
O
14.52
-25.677
30.604
-12.183
A
NA
NA
4
HETATM
B
NA
NA
2
1.00
1
NA
12.49
-21.196
23.161
-7.259
A
K
K
30
HETATM
C
K
K
3
0.50
1
K
15.07
-18.150
24.747
-7.311
A
K
K
31
HETATM
D
K
K
3
0.50
1
K
14.62
-15.327
26.546
-7.271
A
K
K
32
HETATM
E
K
K
3
0.25
1
K
32.32
-26.346
17.500
-0.091
A
O6
NII
1
HETATM
F
O6
NII
4
0.50
1
O
32.23
-26.792
18.413
-1.101
A
C30
NII
1
HETATM
F
C30
NII
4
0.50
1
C
28.48
-25.858
18.381
-2.313
A
C29
NII
1
HETATM
F
C29
NII
4
0.50
1
C
24.32
-24.846
19.537
-2.482
A
C28
NII
1
HETATM
F
C28
NII
4
0.50
1
C
23.96
-24.524
19.125
-3.827
A
N3
NII
1
HETATM
F
N3
NII
4
0.50
1
N
23.30
-24.816
19.667
-5.038
A
C9
NII
1
HETATM
F
C9
NII
4
0.50
1
C
22.02
-24.323
18.826
-5.969
A
C8
NII
1
HETATM
F
C8
NII
4
0.50
1
C
22.71
-24.454
19.140
-7.288
A
C7
NII
1
HETATM
F
C7
NII
4
0.50
1
C
23.38
-23.941
18.223
-8.133
A
C14
NII
1
HETATM
F
C14
NII
4
0.50
1
C
24.25
-23.404
17.194
-7.654
A
O1
NII
1
HETATM
F
O1
NII
4
0.50
1
O
23.25
-24.027
18.396
-9.432
A
N2
NII
1
HETATM
F
N2
NII
4
0.50
1
N
23.94
-23.437
17.313
-10.244
A
C18
NII
1
HETATM
F
C18
NII
4
0.50
1
C
25.40
-22.902
16.186
-9.351
A
C19
NII
1
HETATM
F
C19
NII
4
0.50
1
C
28.34
-22.541
14.913
-10.128
A
C20
NII
1
HETATM
F
C20
NII
4
0.50
1
C
28.78
-21.272
14.320
-9.640
A
N5
NII
1
HETATM
F
N5
NII
4
0.50
1
N
29.25
-21.501
13.584
-8.389
A
C24
NII
1
HETATM
F
C24
NII
4
0.50
1
C
29.55
-20.754
13.375
-10.649
A
C23
NII
1
HETATM
F
C23
NII
4
0.50
1
C
23.70
-24.628
19.491
-9.960
A
C13
NII
1
HETATM
F
C13
NII
4
0.50
1
C
24.43
-24.664
19.578
-11.214
A
O4
NII
1
HETATM
F
O4
NII
4
0.50
1
O
23.47
-25.449
20.855
-5.453
A
C10
NII
1
HETATM
F
C10
NII
4
0.50
1
C
23.86
-25.967
21.755
-4.557
A
C11
NII
1
HETATM
F
C11
NII
4
0.50
1
C
24.03
-25.821
21.450
-3.356
A
O2
NII
1
HETATM
F
O2
NII
4
0.50
1
O
23.26
-26.585
22.889
-4.959
A
N1
NII
1
HETATM
F
N1
NII
4
0.50
1
N
24.27
-27.139
23.806
-3.934
A
C15
NII
1
HETATM
F
C15
NII
4
0.50
1
C
28.81
-27.578
25.169
-4.486
A
C16
NII
1
HETATM
F
C16
NII
4
0.50
1
C
32.08
-29.079
25.434
-4.370
A
C17
NII
1
HETATM
F
C17
NII
4
0.50
1
C
33.47
-29.386
26.645
-5.155
A
N4
NII
1
HETATM
F
N4
NII
4
0.50
1
N
33.26
-29.792
26.259
-6.515
A
C21
NII
1
HETATM
F
C21
NII
4
0.50
1
C
35.49
-30.457
27.433
-4.517
A
C22
NII
1
HETATM
F
C22
NII
4
0.50
1
C
23.39
-25.585
21.156
-6.812
A
C5
NII
1
HETATM
F
C5
NII
4
0.50
1
C
22.53
-26.215
22.316
-7.222
A
C6
NII
1
HETATM
F
C6
NII
4
0.50
1
C
23.10
-26.715
23.178
-6.257
A
C12
NII
1
HETATM
F
C12
NII
4
0.50
1
C
23.96
-27.314
24.231
-6.576
A
O3
NII
1
HETATM
F
O3
NII
4
0.50
1
O
23.38
-25.081
20.273
-7.757
A
C4
NII
1
HETATM
F
C4
NII
4
0.50
1
C
23.47
-25.191
20.493
-9.133
A
C3
NII
1
HETATM
F
C3
NII
4
0.50
1
C
23.29
-25.859
21.681
-9.525
A
C2
NII
1
HETATM
F
C2
NII
4
0.50
1
C
21.94
-26.355
22.564
-8.575
A
C1
NII
1
HETATM
F
C1
NII
4
0.50
1
C
24.23
-26.121
22.184
-10.752
A
N6
NII
1
HETATM
F
N6
NII
4
0.50
1
N
24.33
-25.849
21.686
-12.074
A
C25
NII
1
HETATM
F
C25
NII
4
0.50
1
C
28.25
-27.240
21.922
-12.663
A
C26
NII
1
HETATM
F
C26
NII
4
0.50
1
C
31.26
-27.701
20.751
-13.529
A
C27
NII
1
HETATM
F
C27
NII
4
0.50
1
C
30.07
-27.406
20.984
-14.913
A
O5
NII
1
HETATM
F
O5
NII
4
0.50
1
O
39.84
-10.792
31.621
11.660
A
O6
NII
2
HETATM
G
O6
NII
4
0.50
1
O
40.44
-9.632
30.793
11.713
A
C30
NII
2
HETATM
G
C30
NII
4
0.50
1
C
40.45
-10.005
29.312
11.691
A
C29
NII
2
HETATM
G
C29
NII
4
0.50
1
C
38.81
-11.449
29.175
11.237
A
C28
NII
2
HETATM
G
C28
NII
4
0.50
1
C
38.84
-11.754
27.760
11.258
A
N3
NII
2
HETATM
G
N3
NII
4
0.50
1
N
38.50
-13.069
27.471
11.264
A
C9
NII
2
HETATM
G
C9
NII
4
0.50
1
C
38.32
-13.904
28.574
11.270
A
C8
NII
2
HETATM
G
C8
NII
4
0.50
1
C
38.02
-15.272
28.393
11.276
A
C7
NII
2
HETATM
G
C7
NII
4
0.50
1
C
38.74
-16.077
29.506
11.278
A
C14
NII
2
HETATM
G
C14
NII
4
0.50
1
C
39.00
-15.508
30.629
11.263
A
O1
NII
2
HETATM
G
O1
NII
4
0.50
1
O
38.88
-17.418
29.359
11.298
A
N2
NII
2
HETATM
G
N2
NII
4
0.50
1
N
38.98
-18.313
30.532
11.293
A
C18
NII
2
HETATM
G
C18
NII
4
0.50
1
C
40.61
-18.983
30.689
9.917
A
C19
NII
2
HETATM
G
C19
NII
4
0.50
1
C
41.17
-18.705
32.060
9.293
A
C20
NII
2
HETATM
G
C20
NII
4
0.50
1
C
42.47
-18.124
32.015
7.930
A
N5
NII
2
HETATM
G
N5
NII
4
0.50
1
N
42.25
-17.021
31.043
7.849
A
C24
NII
2
HETATM
G
C24
NII
4
0.50
1
C
41.34
-19.147
31.728
6.901
A
C23
NII
2
HETATM
G
C23
NII
4
0.50
1
C
38.84
-17.979
28.136
11.309
A
C13
NII
2
HETATM
G
C13
NII
4
0.50
1
C
39.37
-19.233
28.077
11.333
A
O4
NII
2
HETATM
G
O4
NII
4
0.50
1
O
38.24
-13.605
26.171
11.275
A
C10
NII
2
HETATM
G
C10
NII
4
0.50
1
C
38.81
-12.822
25.012
11.274
A
C11
NII
2
HETATM
G
C11
NII
4
0.50
1
C
39.41
-11.571
25.082
11.270
A
O2
NII
2
HETATM
G
O2
NII
4
0.50
1
O
38.86
-13.387
23.790
11.288
A
N1
NII
2
HETATM
G
N1
NII
4
0.50
1
N
38.95
-12.501
22.609
11.281
A
C15
NII
2
HETATM
G
C15
NII
4
0.50
1
C
40.36
-11.852
22.413
9.901
A
C16
NII
2
HETATM
G
C16
NII
4
0.50
1
C
40.41
-12.600
21.378
9.065
A
C17
NII
2
HETATM
G
C17
NII
4
0.50
1
C
41.73
-12.110
21.386
7.673
A
N4
NII
2
HETATM
G
N4
NII
4
0.50
1
N
41.38
-11.671
20.038
7.260
A
C21
NII
2
HETATM
G
C21
NII
4
0.50
1
C
41.31
-13.207
21.807
6.794
A
C22
NII
2
HETATM
G
C22
NII
4
0.50
1
C
37.54
-14.988
26.015
11.288
A
C5
NII
2
HETATM
G
C5
NII
4
0.50
1
C
38.10
-15.547
24.747
11.300
A
C6
NII
2
HETATM
G
C6
NII
4
0.50
1
C
38.71
-14.732
23.641
11.298
A
C12
NII
2
HETATM
G
C12
NII
4
0.50
1
C
38.91
-15.303
22.519
11.308
A
O3
NII
2
HETATM
G
O3
NII
4
0.50
1
O
37.55
-15.819
27.123
11.290
A
C4
NII
2
HETATM
G
C4
NII
4
0.50
1
C
38.21
-17.200
26.971
11.306
A
C3
NII
2
HETATM
G
C3
NII
4
0.50
1
C
38.50
-17.759
25.680
11.322
A
C2
NII
2
HETATM
G
C2
NII
4
0.50
1
C
38.21
-16.928
24.566
11.323
A
C1
NII
2
HETATM
G
C1
NII
4
0.50
1
C
38.78
-19.106
25.503
11.345
A
N6
NII
2
HETATM
G
N6
NII
4
0.50
1
N
38.97
-19.722
24.190
11.356
A
C25
NII
2
HETATM
G
C25
NII
4
0.50
1
C
40.00
-20.867
24.323
12.361
A
C26
NII
2
HETATM
G
C26
NII
4
0.50
1
C
40.92
-21.647
23.011
12.511
A
C27
NII
2
HETATM
G
C27
NII
4
0.50
1
C
41.02
-20.802
21.918
12.879
A
O5
NII
2
HETATM
G
O5
NII
4
0.50
1
O
35.33
-8.316
25.804
16.687
A
O6
NII
3
HETATM
H
O6
NII
4
0.25
1
O
34.89
-9.139
24.650
16.535
A
C30
NII
3
HETATM
H
C30
NII
4
0.25
1
C
33.77
-9.619
24.505
15.090
A
C29
NII
3
HETATM
H
C29
NII
4
0.25
1
C
32.02
-10.683
25.547
14.769
A
C28
NII
3
HETATM
H
C28
NII
4
0.25
1
C
31.77
-11.968
24.857
14.785
A
N3
NII
3
HETATM
H
N3
NII
4
0.25
1
N
31.41
-13.108
25.586
14.704
A
C9
NII
3
HETATM
H
C9
NII
4
0.25
1
C
31.68
-12.974
26.966
14.609
A
C8
NII
3
HETATM
H
C8
NII
4
0.25
1
C
31.50
-14.093
27.778
14.517
A
C7
NII
3
HETATM
H
C7
NII
4
0.25
1
C
31.75
-13.953
29.151
14.423
A
C14
NII
3
HETATM
H
C14
NII
4
0.25
1
C
31.78
-12.806
29.653
14.418
A
O1
NII
3
HETATM
H
O1
NII
4
0.25
1
O
31.77
-15.056
29.912
14.330
A
N2
NII
3
HETATM
H
N2
NII
4
0.25
1
N
32.05
-14.967
31.369
14.247
A
C18
NII
3
HETATM
H
C18
NII
4
0.25
1
C
33.92
-14.416
31.938
12.946
A
C19
NII
3
HETATM
H
C19
NII
4
0.25
1
C
35.53
-14.222
33.447
13.138
A
C20
NII
3
HETATM
H
C20
NII
4
0.25
1
C
35.68
-13.519
33.739
14.411
A
N5
NII
3
HETATM
H
N5
NII
4
0.25
1
N
36.55
-12.331
34.575
14.159
A
C24
NII
3
HETATM
H
C24
NII
4
0.25
1
C
36.69
-14.398
34.425
15.382
A
C23
NII
3
HETATM
H
C23
NII
4
0.25
1
C
31.68
-16.292
29.386
14.349
A
C13
NII
3
HETATM
H
C13
NII
4
0.25
1
C
31.89
-17.275
30.154
14.267
A
O4
NII
3
HETATM
H
O4
NII
4
0.25
1
O
31.49
-14.392
25.005
14.734
A
C10
NII
3
HETATM
H
C10
NII
4
0.25
1
C
31.64
-14.609
23.636
14.801
A
C11
NII
3
HETATM
H
C11
NII
4
0.25
1
C
31.84
-13.632
22.867
14.883
A
O2
NII
3
HETATM
H
O2
NII
4
0.25
1
O
31.92
-15.850
23.102
14.800
A
N1
NII
3
HETATM
H
N1
NII
4
0.25
1
N
32.32
-15.999
21.636
14.920
A
C15
NII
3
HETATM
H
C15
NII
4
0.25
1
C
36.13
-16.697
21.018
13.712
A
C16
NII
3
HETATM
H
C16
NII
4
0.25
1
C
38.63
-16.214
19.593
13.431
A
C17
NII
3
HETATM
H
C17
NII
4
0.25
1
C
40.36
-17.056
18.560
14.077
A
N4
NII
3
HETATM
H
N4
NII
4
0.25
1
N
41.00
-18.277
18.291
13.289
A
C21
NII
3
HETATM
H
C21
NII
4
0.25
1
C
41.06
-16.295
17.297
14.197
A
C22
NII
3
HETATM
H
C22
NII
4
0.25
1
C
30.89
-15.507
25.846
14.619
A
C5
NII
3
HETATM
H
C5
NII
4
0.25
1
C
31.54
-16.776
25.273
14.627
A
C6
NII
3
HETATM
H
C6
NII
4
0.25
1
C
31.80
-16.933
23.896
14.721
A
C12
NII
3
HETATM
H
C12
NII
4
0.25
1
C
31.80
-18.094
23.430
14.729
A
O3
NII
3
HETATM
H
O3
NII
4
0.25
1
O
30.95
-15.362
27.216
14.527
A
C4
NII
3
HETATM
H
C4
NII
4
0.25
1
C
31.55
-16.490
28.005
14.448
A
C3
NII
3
HETATM
H
C3
NII
4
0.25
1
C
31.49
-17.768
27.446
14.454
A
C2
NII
3
HETATM
H
C2
NII
4
0.25
1
C
31.66
-17.906
26.069
14.546
A
C1
NII
3
HETATM
H
C1
NII
4
0.25
1
C
31.90
-18.879
28.217
14.368
A
N6
NII
3
HETATM
H
N6
NII
4
0.25
1
N
32.12
-20.218
27.641
14.372
A
C25
NII
3
HETATM
H
C25
NII
4
0.25
1
C
34.35
-21.076
28.652
15.125
A
C26
NII
3
HETATM
H
C26
NII
4
0.25
1
C
35.72
-22.020
27.962
16.111
A
C27
NII
3
HETATM
H
C27
NII
4
0.25
1
C
36.66
-22.892
28.909
16.724
A
O5
NII
3
HETATM
H
O5
NII
4
0.25
1
O
16.61
-15.986
17.482
-3.558
A
O
HOH
1013
HETATM
I
O
HOH
5
1.00
1
O
17.36
-20.485
27.881
0.089
A
O
HOH
1014
HETATM
I
O
HOH
5
1.00
1
O
20.27
-18.330
17.586
-1.716
A
O
HOH
1015
HETATM
I
O
HOH
5
1.00
1
O
26.04
-16.402
31.847
4.131
A
O
HOH
1016
HETATM
I
O
HOH
5
1.00
1
O
18.76
-26.148
29.012
-3.276
A
O
HOH
1017
HETATM
I
O
HOH
5
1.00
1
O
20.26
-10.431
19.435
-5.677
A
O
HOH
1018
HETATM
I
O
HOH
5
1.00
1
O
18.05
-20.903
32.709
-9.279
A
O
HOH
1019
HETATM
I
O
HOH
5
1.00
1
O
19.34
-26.439
32.418
-11.678
A
O
HOH
1020
HETATM
I
O
HOH
5
1.00
1
O
30.46
-27.380
26.442
-1.419
A
O
HOH
1021
HETATM
I
O
HOH
5
1.00
1
O
22.02
-21.159
21.883
7.275
A
O
HOH
1022
HETATM
I
O
HOH
5
1.00
1
O
23.26
-23.387
28.552
-0.785
A
O
HOH
1023
HETATM
I
O
HOH
5
1.00
1
O
26.71
-15.665
19.561
5.284
A
O
HOH
1024
HETATM
I
O
HOH
5
1.00
1
O
29.47
-26.210
27.808
8.006
A
O
HOH
1025
HETATM
I
O
HOH
5
1.00
1
O
20.21
-27.588
21.011
3.304
A
O
HOH
1026
HETATM
I
O
HOH
5
1.00
1
O
32.56
-18.778
35.198
3.795
A
O
HOH
1027
HETATM
I
O
HOH
5
1.00
1
O
25.94
-6.023
19.079
-10.145
A
O
HOH
1028
HETATM
I
O
HOH
5
1.00
1
O
32.56
-30.499
19.045
11.435
A
O
HOH
1029
HETATM
I
O
HOH
5
1.00
1
O
26.08
-21.784
34.950
1.817
A
O
HOH
1030
HETATM
I
O
HOH
5
1.00
1
O
31.47
-23.169
20.999
9.716
A
O
HOH
1031
HETATM
I
O
HOH
5
1.00
1
O
31.30
-25.383
28.232
0.945
A
O
HOH
1032
HETATM
I
O
HOH
5
1.00
1
O
27.73
-25.120
21.273
6.437
A
O
HOH
1033
HETATM
I
O
HOH
5
1.00
1
O
21.81
-25.360
24.894
-14.755
A
O
HOH
1034
HETATM
I
O
HOH
5
1.00
1
O
35.62
-27.949
29.154
-0.962
A
O
HOH
1035
HETATM
I
O
HOH
5
1.00
1
O
29.28
-28.992
29.070
7.547
A
O
HOH
1036
HETATM
I
O
HOH
5
1.00
1
O
42.00
-22.859
31.089
7.326
A
O
HOH
1037
HETATM
I
O
HOH
5
1.00
1
O
31.60
-29.119
21.938
-0.191
A
O
HOH
1038
HETATM
I
O
HOH
5
1.00
1
O
35.45
-32.546
26.075
-11.074
A
O
HOH
1039
HETATM
I
O
HOH
5
1.00
1
O
35.96
-30.763
24.525
-10.506
A
O
HOH
1040
HETATM
I
O
HOH
5
1.00
1
O
0.016300
0.009411
0.000000
0.000000
0.018822
0.000000
0.000000
0.000000
0.022920
0.00000
0.00000
0.00000
Parkinson, G.N.
Neidle, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
61.350
61.350
43.630
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
K 1
39.098
POTASSIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C30 H42 N6 O6
582.691
2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
Y
49
N
N
Y
50
N
C
Y
51
N
N
Y
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
C
N
57
N
N
N
58
N
N
Y
59
N
C
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
N
86
N
N
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
K
N
114
N
NA
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
N
Y
120
N
C
Y
121
N
C
Y
122
N
C
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
Y
134
N
C
N
135
N
C
N
136
N
O
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
Y
144
N
C
Y
145
N
C
N
146
N
C
N
147
N
O
Y
148
N
C
Y
149
N
C
Y
150
N
C
Y
151
N
C
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
Y
62
N
sing
Y
63
N
sing
Y
64
N
doub
N
65
N
sing
Y
66
N
sing
N
67
N
sing
Y
68
N
doub
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
Y
122
N
sing
Y
123
N
doub
Y
124
N
doub
N
125
N
sing
Y
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
Y
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
doub
Y
150
N
sing
N
151
N
sing
Y
152
N
sing
N
153
N
doub
Y
154
N
doub
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
381
1145
1156
10.1016/j.jmb.2008.06.022
18619463
Topology conservation and loop flexibility in quadruplex-drug recognition: crystal structures of inter- and intramolecular telomeric DNA quadruplex-drug complexes
2008
10.2210/pdb3cco/pdb
pdb_00003cco
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MONOCHROMATOR
CCD
2007-10-07
ADSC QUANTUM 210
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.9785
1.0
ID14-1
ESRF
0.9785
SYNCHROTRON
ESRF BEAMLINE ID14-1
3773.462
DNA (5'-D(*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3')
1
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
39.098
POTASSIUM ION
3
syn
non-polymer
582.691
2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone
3
syn
non-polymer
18.015
water
28
nat
water
TELOMERE REPEAT SEQUENCE
no
no
(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)
TAGGGTTAGGGT
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
2
3.14
60.84
VAPOR DIFFUSION, HANGING DROP
6.5
300mM sodium chloride, 50mM sodium cacodylate pH 6.5, 30% v/v MPD, VAPOR DIFFUSION, HANGING DROP, temperature 283K
283
sodium chloride
1
sodium cacodylate
1
MPD
1
HOH
1
sodium chloride
2
sodium cacodylate
2
MPD
2
HOH
2
13.058
6
A
1003
A
1009
-92.575
A_DG1003:DG1009_A
1
-0.300
1.522
-0.550
3.394
5.372
6
A
1004
A
1010
-91.427
A_DG1004:DG1010_A
2
-6.757
1.855
-0.199
3.201
11.220
6
A
1005
A
1011
-91.436
A_DG1005:DG1011_A
3
-20.117
1.688
-0.280
3.266
3.343
36.566
A
A
1003
1004
2.157
A
A
1009
1010
3.381
1.353
-0.196
-1.127
AA_DG1003DG1004:DG1010DG1009_AA
1
-1.400
2.232
36.516
-1.988
0.114
2.336
21.934
A
A
1004
1005
23.290
A
A
1010
1011
3.032
8.483
-0.329
-0.548
AA_DG1004DG1005:DG1011DG1010_AA
2
6.705
-18.409
19.112
-4.327
3.147
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_struct_special_symmetry
struct_conn
struct_ref_seq
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-09-23
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Human Telomeric Sequence bound to same ligand
RCSB
Y
PDBJ
2008-02-26
REL
REL
NA
SODIUM ION
K
POTASSIUM ION
NII
2,7-bis[3-(dimethylamino)propyl]-4,9-bis[(3-hydroxypropyl)amino]benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone
HOH
water
THIS SEQUENCE OCCURS NATURALLY IN HUMANS
sample
1KF1
PDB ENTRY 1KF1
PDB
experimental model
NA
1
2
NA
NA
4
A
K
30
3
K
K
30
A
K
31
3
K
K
31
A
K
32
3
K
K
32
A
P10
1
4
NII
NII
1
A
P10
2
4
NII
NII
2
A
P10
3
4
NII
NII
3
A
HOH
2
5
HOH
HOH
1013
A
HOH
3
5
HOH
HOH
1014
A
HOH
4
5
HOH
HOH
1015
A
HOH
5
5
HOH
HOH
1016
A
HOH
6
5
HOH
HOH
1017
A
HOH
7
5
HOH
HOH
1018
A
HOH
8
5
HOH
HOH
1019
A
HOH
9
5
HOH
HOH
1020
A
HOH
10
5
HOH
HOH
1021
A
HOH
11
5
HOH
HOH
1022
A
HOH
12
5
HOH
HOH
1023
A
HOH
13
5
HOH
HOH
1024
A
HOH
14
5
HOH
HOH
1025
A
HOH
15
5
HOH
HOH
1026
A
HOH
16
5
HOH
HOH
1027
A
HOH
17
5
HOH
HOH
1028
A
HOH
18
5
HOH
HOH
1029
A
HOH
19
5
HOH
HOH
1030
A
HOH
20
5
HOH
HOH
1031
A
HOH
21
5
HOH
HOH
1032
A
HOH
22
5
HOH
HOH
1033
A
HOH
23
5
HOH
HOH
1034
A
HOH
24
5
HOH
HOH
1035
A
HOH
25
5
HOH
HOH
1036
A
HOH
26
5
HOH
HOH
1037
A
HOH
27
5
HOH
HOH
1038
A
HOH
28
5
HOH
HOH
1039
A
HOH
29
5
HOH
HOH
1040
A
T
1001
n
1
DT
1001
A
A
1002
n
2
DA
1002
A
G
1003
n
3
DG
1003
A
G
1004
n
4
DG
1004
A
G
1005
n
5
DG
1005
A
T
1006
n
6
DT
1006
A
T
1007
n
7
DT
1007
A
A
1008
n
8
DA
1008
A
G
1009
n
9
DG
1009
A
G
1010
n
10
DG
1010
A
G
1011
n
11
DG
1011
A
T
1012
n
12
DT
1012
A
author_and_software_defined_assembly
PISA
2
dimeric
880
-25
4250
A
DG
1004
A
O6
DG
4
1_555
A
K
30
C
K
K
1_555
A
DG
1005
A
O6
DG
5
1_555
66.1
A
DG
1004
A
O6
DG
4
1_555
A
K
30
C
K
K
1_555
A
DG
1011
A
O6
DG
11
1_555
118.6
A
DG
1005
A
O6
DG
5
1_555
A
K
30
C
K
K
1_555
A
DG
1011
A
O6
DG
11
1_555
75.0
A
DG
1003
A
O6
DG
3
1_555
A
K
31
D
K
K
1_555
A
DG
1009
A
O6
DG
9
1_555
66.6
A
DG
1003
A
O6
DG
3
1_555
A
K
32
E
K
K
1_555
A
DG
1009
A
O6
DG
9
1_555
67.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_564
x,x-y+1,-z-1/3
crystal symmetry operation
-30.6750000000
53.1306585222
-14.5433333333
1
A
K
30
C
K
1
A
K
31
D
K
1
A
K
32
E
K
1
A
NII
3
H
NII
1
A
O5'
DT
1001
A
O5'
DT
1
1
Y
1
A
C5'
DT
1001
A
C5'
DT
1
1
Y
1
A
C4'
DT
1001
A
C4'
DT
1
1
Y
1
A
O4'
DT
1001
A
O4'
DT
1
1
Y
1
A
C3'
DT
1001
A
C3'
DT
1
1
Y
1
A
C2'
DT
1001
A
C2'
DT
1
1
Y
1
A
C1'
DT
1001
A
C1'
DT
1
1
Y
1
A
N1
DT
1001
A
N1
DT
1
1
Y
1
A
C2
DT
1001
A
C2
DT
1
1
Y
1
A
O2
DT
1001
A
O2
DT
1
1
Y
1
A
N3
DT
1001
A
N3
DT
1
1
Y
1
A
C4
DT
1001
A
C4
DT
1
1
Y
1
A
O4
DT
1001
A
O4
DT
1
1
Y
1
A
C5
DT
1001
A
C5
DT
1
1
Y
1
A
C7
DT
1001
A
C7
DT
1
1
Y
1
A
C6
DT
1001
A
C6
DT
1
1
Y
1
A
C5'
DT
1012
A
C5'
DT
12
1
Y
1
A
C4'
DT
1012
A
C4'
DT
12
1
Y
1
A
O4'
DT
1012
A
O4'
DT
12
1
Y
1
A
C3'
DT
1012
A
C3'
DT
12
1
Y
1
A
O3'
DT
1012
A
O3'
DT
12
1
Y
1
A
C2'
DT
1012
A
C2'
DT
12
1
Y
1
A
C1'
DT
1012
A
C1'
DT
12
1
Y
1
A
N1
DT
1012
A
N1
DT
12
1
Y
1
A
C2
DT
1012
A
C2
DT
12
1
Y
1
A
O2
DT
1012
A
O2
DT
12
1
Y
1
A
N3
DT
1012
A
N3
DT
12
1
Y
1
A
C4
DT
1012
A
C4
DT
12
1
Y
1
A
O4
DT
1012
A
O4
DT
12
1
Y
1
A
C5
DT
1012
A
C5
DT
12
1
Y
1
A
C7
DT
1012
A
C7
DT
12
1
Y
1
A
C6
DT
1012
A
C6
DT
12
1
Y
1
A
A
OP1
O
DT
HOH
1006
1026
1.99
1
-3.63
0.40
104.50
100.87
A
A
A
O4'
C4'
C3'
DA
DA
DA
1002
1002
1002
N
1
-5.61
0.80
105.90
100.29
A
A
A
O4'
C1'
C2'
DG
DG
DG
1003
1003
1003
N
1
8.26
0.30
108.30
116.56
A
A
A
O4'
C1'
N9
DG
DG
DG
1003
1003
1003
N
1
3.31
0.50
111.90
115.21
A
A
A
C2
N3
C4
DG
DG
DG
1003
1003
1003
N
1
-3.94
0.60
118.80
114.86
A
A
A
C4
C5
C6
DG
DG
DG
1003
1003
1003
N
1
6.22
0.50
111.50
117.72
A
A
A
C5
C6
N1
DG
DG
DG
1003
1003
1003
N
1
3.52
0.40
110.80
114.32
A
A
A
C4
C5
N7
DG
DG
DG
1003
1003
1003
N
1
-3.04
0.50
104.30
101.26
A
A
A
C5
N7
C8
DG
DG
DG
1003
1003
1003
N
1
-6.82
0.60
119.90
113.08
A
A
A
N1
C6
O6
DG
DG
DG
1003
1003
1003
N
1
13.30
1.40
114.30
127.60
A
A
A
N9
C1'
C2'
DG
DG
DG
1004
1004
1004
N
1
-4.38
0.70
108.00
103.62
A
A
A
O4'
C1'
N9
DG
DG
DG
1004
1004
1004
N
1
5.13
0.50
111.50
116.63
A
A
A
C5
C6
N1
DG
DG
DG
1004
1004
1004
N
1
4.02
0.40
110.80
114.82
A
A
A
C4
C5
N7
DG
DG
DG
1004
1004
1004
N
1
-3.56
0.50
104.30
100.74
A
A
A
C5
N7
C8
DG
DG
DG
1004
1004
1004
N
1
-6.03
0.60
128.60
122.57
A
A
A
C5
C6
O6
DG
DG
DG
1004
1004
1004
N
1
11.57
0.30
108.30
119.87
A
A
A
O4'
C1'
N9
DG
DG
DG
1005
1005
1005
N
1
-4.96
0.60
125.10
120.14
A
A
A
C6
N1
C2
DG
DG
DG
1005
1005
1005
N
1
-3.58
0.50
128.60
125.02
A
A
A
N3
C4
C5
DG
DG
DG
1005
1005
1005
N
1
4.42
0.50
111.50
115.92
A
A
A
C5
C6
N1
DG
DG
DG
1005
1005
1005
N
1
4.50
0.60
126.00
130.50
A
A
A
N3
C4
N9
DG
DG
DG
1005
1005
1005
N
1
-7.43
0.60
128.60
121.17
A
A
A
C5
C6
O6
DG
DG
DG
1005
1005
1005
N
1
7.19
0.30
108.30
115.49
A
A
A
O4'
C1'
N1
DT
DT
DT
1006
1006
1006
N
1
5.59
0.60
119.00
124.59
A
A
A
C4
C5
C7
DT
DT
DT
1006
1006
1006
N
1
-3.77
0.60
122.90
119.13
A
A
A
C6
C5
C7
DT
DT
DT
1006
1006
1006
N
1
9.56
1.10
110.50
120.06
A
A
A
O3'
P
OP1
DT
DT
DT
1006
1007
1007
Y
1
-5.26
0.80
109.40
104.14
A
A
A
O5'
C5'
C4'
DT
DT
DT
1007
1007
1007
N
1
-5.22
0.80
102.40
97.18
A
A
A
C3'
C2'
C1'
DT
DT
DT
1007
1007
1007
N
1
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N1
DT
DT
DT
1007
1007
1007
N
1
-3.63
0.60
127.20
123.57
A
A
A
C2
N3
C4
DT
DT
DT
1007
1007
1007
N
1
3.59
0.50
111.90
115.49
A
A
A
C2
N3
C4
DG
DG
DG
1009
1009
1009
N
1
-4.53
0.60
118.80
114.27
A
A
A
C4
C5
C6
DG
DG
DG
1009
1009
1009
N
1
3.83
0.50
111.50
115.33
A
A
A
C5
C6
N1
DG
DG
DG
1009
1009
1009
N
1
-4.73
0.60
119.90
115.17
A
A
A
N1
C6
O6
DG
DG
DG
1009
1009
1009
N
1
-2.46
0.40
104.50
102.04
A
A
A
O4'
C4'
C3'
DG
DG
DG
1010
1010
1010
N
1
-6.49
0.70
108.00
101.51
A
A
A
O4'
C1'
N9
DG
DG
DG
1010
1010
1010
N
1
-2.75
0.40
105.40
102.65
A
A
A
N9
C4
C5
DG
DG
DG
1010
1010
1010
N
1
-5.14
0.60
119.90
114.76
A
A
A
N1
C6
O6
DG
DG
DG
1010
1010
1010
N
1
4.13
0.60
128.60
132.73
A
A
A
C5
C6
O6
DG
DG
DG
1010
1010
1010
N
1
-5.98
0.90
105.70
99.72
A
A
A
O5'
P
OP2
DG
DG
DG
1011
1011
1011
N
1
5.44
0.30
108.30
113.74
A
A
A
O4'
C1'
N9
DG
DG
DG
1011
1011
1011
N
1
-3.43
0.50
111.50
108.07
A
A
A
C5
C6
N1
DG
DG
DG
1011
1011
1011
N
1
4.90
0.60
128.60
133.50
A
A
A
C5
C6
O6
DG
DG
DG
1011
1011
1011
N
1
A
A
C5
C6
DG
DG
1003
1003
-0.063
0.010
1.419
1.356
N
1
A
A
P
O5'
DG
DG
1004
1004
-0.060
0.010
1.593
1.533
N
1
A
A
C4
C5
DG
DG
1004
1004
-0.043
0.007
1.379
1.336
N
1
A
A
C4
C5
DG
DG
1005
1005
-0.047
0.007
1.379
1.332
N
1
A
A
C6
N1
DG
DG
1005
1005
-0.059
0.007
1.391
1.332
N
1
A
A
C4
C5
DG
DG
1009
1009
-0.060
0.007
1.379
1.319
N
1
A
A
N7
C8
DG
DG
1009
1009
-0.038
0.006
1.305
1.267
N
1
A
A
O3'
C3'
DG
DG
1011
1011
-0.048
0.006
1.419
1.371
N
1
A
A
C6
O6
DG
DG
1011
1011
0.057
0.009
1.237
1.294
N
21.260
1.39
0.70
0.00
1.39
0.00
-2.09
0.917
0.894
0.30275
0.25436
0.25664
0.25664
2.20
10.00
123
2520
2520
4.7
98.80
6.344
0.167
RANDOM
1
Overall
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.348
0.263
0.80
0.80
1.40
PDB ENTRY 1KF1
MAXIMUM LIKELIHOOD
MASK
2.20
10.00
28
377
130
219
0
0.019
0.021
381
3.306
3.000
574
0.138
0.200
47
0.019
0.020
190
0.394
0.200
108
0.353
0.200
228
0.318
0.200
15
0.232
0.200
3
0.397
0.200
66
0.179
0.200
8
0.101
0.200
3
1.920
3.000
689
3.389
4.500
574
0.567
0.324
2.255
5
178
178
20
100.00
33
1.97
22.69
3CCO
3739
3697
0.0
0.056
1
23.3
10
98.9
0.134
1.97
2.04
10.8
359
10.8
100.0
refinement
REFMAC
5.2.0019
data collection
ADSC
Quantum
data reduction
d*TREK
data scaling
d*TREK
phasing
PHASER
Structural adaptation and conservation in quadruplex-drug recognition
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
metalc
2.816
A
NA
4
B
NA
NA
1_555
A
DG
1011
A
O4'
DG
11
1_555
metalc
2.937
A
K
30
C
K
K
1_555
A
DG
1004
A
O6
DG
4
1_555
metalc
2.769
A
K
30
C
K
K
1_555
A
DG
1005
A
O6
DG
5
1_555
metalc
2.658
A
K
30
C
K
K
1_555
A
DG
1011
A
O6
DG
11
1_555
metalc
2.864
A
K
31
D
K
K
1_555
A
DG
1003
A
O6
DG
3
1_555
metalc
2.963
A
K
31
D
K
K
1_555
A
DG
1009
A
O6
DG
9
1_555
metalc
2.866
A
K
32
E
K
K
1_555
A
DG
1003
A
O6
DG
3
1_555
metalc
2.899
A
K
32
E
K
K
1_555
A
DG
1009
A
O6
DG
9
1_555
hydrog
TYPE_11_PAIR
A
DG
1003
A
N2
DG
3
1_555
A
DA
1008
A
N7
DA
8
1_555
hydrog
TYPE_11_PAIR
A
DG
1003
A
N3
DG
3
1_555
A
DA
1008
A
N6
DA
8
1_555
hydrog
TYPE_6_PAIR
A
DG
1003
A
N1
DG
3
1_555
A
DG
1009
A
O6
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
1003
A
N2
DG
3
1_555
A
DG
1009
A
N7
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
1004
A
N1
DG
4
1_555
A
DG
1010
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
1004
A
N2
DG
4
1_555
A
DG
1010
A
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
1005
A
N1
DG
5
1_555
A
DG
1011
A
O6
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
1005
A
N2
DG
5
1_555
A
DG
1011
A
N7
DG
11
1_555
DNA
QUADRUPLEX, DNA, PROPELLER, DIMERIC, HUMAN TELOMERE PARALLEL STRANDED, LIGAND, COMPLEX, naphthalene diimidine
3CCO
PDB
1
1
3CCO
TAGGGTTAGGGT
1001
1012
3CCO
1001
1012
3CCO
A
1
1
12
BINDING SITE FOR RESIDUE NA A 4
A
NA
4
Software
4
BINDING SITE FOR RESIDUE K A 30
A
K
30
Software
5
BINDING SITE FOR RESIDUE K A 31
A
K
31
Software
6
BINDING SITE FOR RESIDUE K A 32
A
K
32
Software
3
BINDING SITE FOR RESIDUE NII A 1
A
NII
1
Software
3
BINDING SITE FOR RESIDUE NII A 2
A
NII
2
Software
4
BINDING SITE FOR RESIDUE NII A 3
A
NII
3
Software
1
A
DG
1011
A
DG
11
4
1_555
A
HOH
1013
I
HOH
4
12_564
A
HOH
1015
I
HOH
4
12_564
A
HOH
1020
I
HOH
4
1_555
A
K
31
D
K
5
1_555
A
DG
1004
A
DG
4
5
12_564
A
DG
1005
A
DG
5
5
1_555
A
DG
1010
A
DG
10
5
1_555
A
DG
1011
A
DG
11
5
1_555
A
K
30
C
K
6
1_555
A
K
32
E
K
6
12_564
A
DG
1003
A
DG
3
6
12_564
A
DG
1004
A
DG
4
6
12_564
A
DG
1009
A
DG
9
6
12_564
A
DG
1010
A
DG
10
6
1_555
A
K
31
D
K
3
1_555
A
DG
1003
A
DG
3
3
12_564
A
DG
1009
A
DG
9
3
1_555
A
DG
1005
A
DG
5
3
1_555
A
DT
1006
A
DT
6
3
11_455
A
DG
1011
A
DG
11
3
1_555
A
NII
3
H
NII
4
12_565
A
DT
1007
A
DT
7
4
1_555
A
DG
1009
A
DG
9
4
4_565
A
HOH
1016
I
HOH
4
4_565
A
NII
2
G
NII
1
12_565
181
P 64 2 2