0.023277
0.000000
0.000000
0.000000
0.011681
0.000000
0.000000
0.000000
0.015674
0.000000
0.000000
0.000000
Lima, L.-M.T.R.
Foguel, D.
Polikarpov, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
42.960
85.610
63.800
C10 H9 N O3 S
223.248
5-aminonaphthalene-1-sulfonic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
N
9
N
O
N
10
N
S
N
11
N
O
N
12
N
O
Y
13
N
C
Y
14
N
C
N
15
N
N
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
N
N
26
S
C
N
27
N
C
N
28
N
O
N
29
N
C
N
30
N
O
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
C
N
44
N
C
N
45
N
N
N
46
N
C
N
47
N
N
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
Y
146
N
C
Y
147
N
N
Y
148
N
C
Y
149
N
C
Y
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
S
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
N
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
S
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
O
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
R
C
N
313
N
O
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
N
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
doub
N
5
N
sing
Y
6
N
sing
N
7
N
sing
Y
8
N
sing
Y
9
N
doub
Y
10
N
sing
Y
11
N
doub
N
12
N
sing
Y
13
N
sing
Y
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
doub
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
doub
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
Y
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
UK
Bioorg.Med.Chem.
BMECEP
1200
0968-0896
18
100
110
10.1016/j.bmc.2009.11.025
19954984
Identification of a novel ligand binding motif in the transthyretin channel.
2010
10.2210/pdb3cft/pdb
pdb_00003cft
100
1
Osmic
IMAGE PLATE
2005-06-02
MAR scanner 345 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU ULTRAX 18
12961.511
Transthyretin
UNP residues 30-147
2
man
polymer
223.248
5-aminonaphthalene-1-sulfonic acid
3
syn
non-polymer
18.015
water
141
nat
water
Prealbumin, TBPA, TTR, ATTR
no
no
CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE
HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE
HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
TTR, PALB
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
1
2.26
45.64
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_special_symmetry
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-03-03
1
1
2011-07-13
1
2
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the apo form of human wild-type transthyretin
Same protein in complex with 1-anilino-8-naphthalene sulfonate
Same protein in complex with diclofenac
RCSB
Y
RCSB
2008-03-04
REL
REL
5NS
5-aminonaphthalene-1-sulfonic acid
HOH
water
3CFM
PDB entry 3CFM
PDB
experimental model
5NS
1
2
5NS
5NS
1
A
5NS
1
2
5NS
5NS
1
B
5NS
1
2
5NS
5NS
128
B
HOH
1
3
HOH
HOH
128
A
HOH
2
3
HOH
HOH
129
A
HOH
3
3
HOH
HOH
130
A
HOH
5
3
HOH
HOH
131
A
HOH
6
3
HOH
HOH
132
A
HOH
8
3
HOH
HOH
133
A
HOH
9
3
HOH
HOH
134
A
HOH
10
3
HOH
HOH
135
A
HOH
11
3
HOH
HOH
136
A
HOH
12
3
HOH
HOH
137
A
HOH
14
3
HOH
HOH
138
A
HOH
16
3
HOH
HOH
139
A
HOH
17
3
HOH
HOH
140
A
HOH
18
3
HOH
HOH
141
A
HOH
19
3
HOH
HOH
142
A
HOH
22
3
HOH
HOH
143
A
HOH
23
3
HOH
HOH
144
A
HOH
24
3
HOH
HOH
145
A
HOH
25
3
HOH
HOH
146
A
HOH
26
3
HOH
HOH
147
A
HOH
27
3
HOH
HOH
148
A
HOH
29
3
HOH
HOH
149
A
HOH
30
3
HOH
HOH
150
A
HOH
32
3
HOH
HOH
151
A
HOH
35
3
HOH
HOH
152
A
HOH
36
3
HOH
HOH
153
A
HOH
37
3
HOH
HOH
154
A
HOH
43
3
HOH
HOH
155
A
HOH
44
3
HOH
HOH
156
A
HOH
46
3
HOH
HOH
157
A
HOH
47
3
HOH
HOH
158
A
HOH
48
3
HOH
HOH
159
A
HOH
50
3
HOH
HOH
160
A
HOH
52
3
HOH
HOH
161
A
HOH
55
3
HOH
HOH
162
A
HOH
57
3
HOH
HOH
163
A
HOH
58
3
HOH
HOH
164
A
HOH
60
3
HOH
HOH
165
A
HOH
62
3
HOH
HOH
166
A
HOH
65
3
HOH
HOH
167
A
HOH
66
3
HOH
HOH
168
A
HOH
68
3
HOH
HOH
169
A
HOH
69
3
HOH
HOH
170
A
HOH
70
3
HOH
HOH
171
A
HOH
72
3
HOH
HOH
172
A
HOH
74
3
HOH
HOH
173
A
HOH
78
3
HOH
HOH
174
A
HOH
79
3
HOH
HOH
175
A
HOH
80
3
HOH
HOH
176
A
HOH
81
3
HOH
HOH
177
A
HOH
85
3
HOH
HOH
178
A
HOH
87
3
HOH
HOH
179
A
HOH
88
3
HOH
HOH
180
A
HOH
89
3
HOH
HOH
181
A
HOH
90
3
HOH
HOH
182
A
HOH
92
3
HOH
HOH
183
A
HOH
95
3
HOH
HOH
184
A
HOH
97
3
HOH
HOH
185
A
HOH
98
3
HOH
HOH
186
A
HOH
101
3
HOH
HOH
187
A
HOH
102
3
HOH
HOH
188
A
HOH
103
3
HOH
HOH
189
A
HOH
105
3
HOH
HOH
190
A
HOH
107
3
HOH
HOH
191
A
HOH
108
3
HOH
HOH
192
A
HOH
110
3
HOH
HOH
193
A
HOH
111
3
HOH
HOH
194
A
HOH
112
3
HOH
HOH
195
A
HOH
113
3
HOH
HOH
196
A
HOH
114
3
HOH
HOH
197
A
HOH
115
3
HOH
HOH
198
A
HOH
116
3
HOH
HOH
199
A
HOH
121
3
HOH
HOH
200
A
HOH
122
3
HOH
HOH
201
A
HOH
124
3
HOH
HOH
202
A
HOH
132
3
HOH
HOH
203
A
HOH
133
3
HOH
HOH
204
A
HOH
138
3
HOH
HOH
205
A
HOH
139
3
HOH
HOH
206
A
HOH
141
3
HOH
HOH
207
A
HOH
4
3
HOH
HOH
129
B
HOH
7
3
HOH
HOH
130
B
HOH
13
3
HOH
HOH
131
B
HOH
15
3
HOH
HOH
132
B
HOH
20
3
HOH
HOH
133
B
HOH
21
3
HOH
HOH
134
B
HOH
28
3
HOH
HOH
135
B
HOH
31
3
HOH
HOH
136
B
HOH
33
3
HOH
HOH
137
B
HOH
34
3
HOH
HOH
138
B
HOH
38
3
HOH
HOH
139
B
HOH
39
3
HOH
HOH
140
B
HOH
40
3
HOH
HOH
141
B
HOH
41
3
HOH
HOH
142
B
HOH
42
3
HOH
HOH
143
B
HOH
45
3
HOH
HOH
144
B
HOH
49
3
HOH
HOH
145
B
HOH
51
3
HOH
HOH
146
B
HOH
53
3
HOH
HOH
147
B
HOH
54
3
HOH
HOH
148
B
HOH
56
3
HOH
HOH
149
B
HOH
59
3
HOH
HOH
150
B
HOH
61
3
HOH
HOH
151
B
HOH
63
3
HOH
HOH
152
B
HOH
64
3
HOH
HOH
153
B
HOH
67
3
HOH
HOH
154
B
HOH
71
3
HOH
HOH
155
B
HOH
73
3
HOH
HOH
156
B
HOH
75
3
HOH
HOH
157
B
HOH
76
3
HOH
HOH
158
B
HOH
77
3
HOH
HOH
159
B
HOH
82
3
HOH
HOH
160
B
HOH
83
3
HOH
HOH
161
B
HOH
84
3
HOH
HOH
162
B
HOH
86
3
HOH
HOH
163
B
HOH
91
3
HOH
HOH
164
B
HOH
93
3
HOH
HOH
165
B
HOH
96
3
HOH
HOH
166
B
HOH
100
3
HOH
HOH
167
B
HOH
104
3
HOH
HOH
168
B
HOH
106
3
HOH
HOH
169
B
HOH
109
3
HOH
HOH
170
B
HOH
117
3
HOH
HOH
171
B
HOH
118
3
HOH
HOH
172
B
HOH
119
3
HOH
HOH
173
B
HOH
120
3
HOH
HOH
174
B
HOH
123
3
HOH
HOH
175
B
HOH
125
3
HOH
HOH
176
B
HOH
126
3
HOH
HOH
177
B
HOH
127
3
HOH
HOH
178
B
HOH
128
3
HOH
HOH
179
B
HOH
129
3
HOH
HOH
180
B
HOH
130
3
HOH
HOH
181
B
HOH
131
3
HOH
HOH
182
B
HOH
134
3
HOH
HOH
183
B
HOH
135
3
HOH
HOH
184
B
HOH
136
3
HOH
HOH
185
B
HOH
137
3
HOH
HOH
186
B
HOH
140
3
HOH
HOH
187
B
HOH
142
3
HOH
HOH
188
B
HOH
143
3
HOH
HOH
189
B
2.060
2.060
42.810
42.810
CYS
10
n
1
CYS
10
A
PRO
11
n
2
PRO
11
A
LEU
12
n
3
LEU
12
A
MET
13
n
4
MET
13
A
VAL
14
n
5
VAL
14
A
LYS
15
n
6
LYS
15
A
VAL
16
n
7
VAL
16
A
LEU
17
n
8
LEU
17
A
ASP
18
n
9
ASP
18
A
ALA
19
n
10
ALA
19
A
VAL
20
n
11
VAL
20
A
ARG
21
n
12
ARG
21
A
GLY
22
n
13
GLY
22
A
SER
23
n
14
SER
23
A
PRO
24
n
15
PRO
24
A
ALA
25
n
16
ALA
25
A
ILE
26
n
17
ILE
26
A
ASN
27
n
18
ASN
27
A
VAL
28
n
19
VAL
28
A
ALA
29
n
20
ALA
29
A
VAL
30
n
21
VAL
30
A
HIS
31
n
22
HIS
31
A
VAL
32
n
23
VAL
32
A
PHE
33
n
24
PHE
33
A
ARG
34
n
25
ARG
34
A
LYS
35
n
26
LYS
35
A
ALA
36
n
27
ALA
36
A
ALA
37
n
28
ALA
37
A
ASP
38
n
29
ASP
38
A
ASP
39
n
30
ASP
39
A
THR
40
n
31
THR
40
A
TRP
41
n
32
TRP
41
A
GLU
42
n
33
GLU
42
A
PRO
43
n
34
PRO
43
A
PHE
44
n
35
PHE
44
A
ALA
45
n
36
ALA
45
A
SER
46
n
37
SER
46
A
GLY
47
n
38
GLY
47
A
LYS
48
n
39
LYS
48
A
THR
49
n
40
THR
49
A
SER
50
n
41
SER
50
A
GLU
51
n
42
GLU
51
A
SER
52
n
43
SER
52
A
GLY
53
n
44
GLY
53
A
GLU
54
n
45
GLU
54
A
LEU
55
n
46
LEU
55
A
HIS
56
n
47
HIS
56
A
GLY
57
n
48
GLY
57
A
LEU
58
n
49
LEU
58
A
THR
59
n
50
THR
59
A
THR
60
n
51
THR
60
A
GLU
61
n
52
GLU
61
A
GLU
62
n
53
GLU
62
A
GLU
63
n
54
GLU
63
A
PHE
64
n
55
PHE
64
A
VAL
65
n
56
VAL
65
A
GLU
66
n
57
GLU
66
A
GLY
67
n
58
GLY
67
A
ILE
68
n
59
ILE
68
A
TYR
69
n
60
TYR
69
A
LYS
70
n
61
LYS
70
A
VAL
71
n
62
VAL
71
A
GLU
72
n
63
GLU
72
A
ILE
73
n
64
ILE
73
A
ASP
74
n
65
ASP
74
A
THR
75
n
66
THR
75
A
LYS
76
n
67
LYS
76
A
SER
77
n
68
SER
77
A
TYR
78
n
69
TYR
78
A
TRP
79
n
70
TRP
79
A
LYS
80
n
71
LYS
80
A
ALA
81
n
72
ALA
81
A
LEU
82
n
73
LEU
82
A
GLY
83
n
74
GLY
83
A
ILE
84
n
75
ILE
84
A
SER
85
n
76
SER
85
A
PRO
86
n
77
PRO
86
A
PHE
87
n
78
PHE
87
A
HIS
88
n
79
HIS
88
A
GLU
89
n
80
GLU
89
A
HIS
90
n
81
HIS
90
A
ALA
91
n
82
ALA
91
A
GLU
92
n
83
GLU
92
A
VAL
93
n
84
VAL
93
A
VAL
94
n
85
VAL
94
A
PHE
95
n
86
PHE
95
A
THR
96
n
87
THR
96
A
ALA
97
n
88
ALA
97
A
ASN
98
n
89
ASN
98
A
ASP
99
n
90
ASP
99
A
SER
100
n
91
SER
100
A
GLY
101
n
92
GLY
101
A
PRO
102
n
93
PRO
102
A
ARG
103
n
94
ARG
103
A
ARG
104
n
95
ARG
104
A
TYR
105
n
96
TYR
105
A
THR
106
n
97
THR
106
A
ILE
107
n
98
ILE
107
A
ALA
108
n
99
ALA
108
A
ALA
109
n
100
ALA
109
A
LEU
110
n
101
LEU
110
A
LEU
111
n
102
LEU
111
A
SER
112
n
103
SER
112
A
PRO
113
n
104
PRO
113
A
TYR
114
n
105
TYR
114
A
SER
115
n
106
SER
115
A
TYR
116
n
107
TYR
116
A
SER
117
n
108
SER
117
A
THR
118
n
109
THR
118
A
THR
119
n
110
THR
119
A
ALA
120
n
111
ALA
120
A
VAL
121
n
112
VAL
121
A
VAL
122
n
113
VAL
122
A
THR
123
n
114
THR
123
A
ASN
124
n
115
ASN
124
A
PRO
125
n
116
PRO
125
A
n
117
126
A
n
118
127
A
CYS
10
n
1
CYS
10
B
PRO
11
n
2
PRO
11
B
LEU
12
n
3
LEU
12
B
MET
13
n
4
MET
13
B
VAL
14
n
5
VAL
14
B
LYS
15
n
6
LYS
15
B
VAL
16
n
7
VAL
16
B
LEU
17
n
8
LEU
17
B
ASP
18
n
9
ASP
18
B
ALA
19
n
10
ALA
19
B
VAL
20
n
11
VAL
20
B
ARG
21
n
12
ARG
21
B
GLY
22
n
13
GLY
22
B
SER
23
n
14
SER
23
B
PRO
24
n
15
PRO
24
B
ALA
25
n
16
ALA
25
B
ILE
26
n
17
ILE
26
B
ASN
27
n
18
ASN
27
B
VAL
28
n
19
VAL
28
B
ALA
29
n
20
ALA
29
B
VAL
30
n
21
VAL
30
B
HIS
31
n
22
HIS
31
B
VAL
32
n
23
VAL
32
B
PHE
33
n
24
PHE
33
B
ARG
34
n
25
ARG
34
B
LYS
35
n
26
LYS
35
B
ALA
36
n
27
ALA
36
B
ALA
37
n
28
ALA
37
B
ASP
38
n
29
ASP
38
B
ASP
39
n
30
ASP
39
B
THR
40
n
31
THR
40
B
TRP
41
n
32
TRP
41
B
GLU
42
n
33
GLU
42
B
PRO
43
n
34
PRO
43
B
PHE
44
n
35
PHE
44
B
ALA
45
n
36
ALA
45
B
SER
46
n
37
SER
46
B
GLY
47
n
38
GLY
47
B
LYS
48
n
39
LYS
48
B
THR
49
n
40
THR
49
B
SER
50
n
41
SER
50
B
GLU
51
n
42
GLU
51
B
SER
52
n
43
SER
52
B
GLY
53
n
44
GLY
53
B
GLU
54
n
45
GLU
54
B
LEU
55
n
46
LEU
55
B
HIS
56
n
47
HIS
56
B
GLY
57
n
48
GLY
57
B
LEU
58
n
49
LEU
58
B
THR
59
n
50
THR
59
B
THR
60
n
51
THR
60
B
GLU
61
n
52
GLU
61
B
GLU
62
n
53
GLU
62
B
GLU
63
n
54
GLU
63
B
PHE
64
n
55
PHE
64
B
VAL
65
n
56
VAL
65
B
GLU
66
n
57
GLU
66
B
GLY
67
n
58
GLY
67
B
ILE
68
n
59
ILE
68
B
TYR
69
n
60
TYR
69
B
LYS
70
n
61
LYS
70
B
VAL
71
n
62
VAL
71
B
GLU
72
n
63
GLU
72
B
ILE
73
n
64
ILE
73
B
ASP
74
n
65
ASP
74
B
THR
75
n
66
THR
75
B
LYS
76
n
67
LYS
76
B
SER
77
n
68
SER
77
B
TYR
78
n
69
TYR
78
B
TRP
79
n
70
TRP
79
B
LYS
80
n
71
LYS
80
B
ALA
81
n
72
ALA
81
B
LEU
82
n
73
LEU
82
B
GLY
83
n
74
GLY
83
B
ILE
84
n
75
ILE
84
B
SER
85
n
76
SER
85
B
PRO
86
n
77
PRO
86
B
PHE
87
n
78
PHE
87
B
HIS
88
n
79
HIS
88
B
GLU
89
n
80
GLU
89
B
HIS
90
n
81
HIS
90
B
ALA
91
n
82
ALA
91
B
GLU
92
n
83
GLU
92
B
VAL
93
n
84
VAL
93
B
VAL
94
n
85
VAL
94
B
PHE
95
n
86
PHE
95
B
THR
96
n
87
THR
96
B
ALA
97
n
88
ALA
97
B
ASN
98
n
89
ASN
98
B
ASP
99
n
90
ASP
99
B
SER
100
n
91
SER
100
B
GLY
101
n
92
GLY
101
B
PRO
102
n
93
PRO
102
B
ARG
103
n
94
ARG
103
B
ARG
104
n
95
ARG
104
B
TYR
105
n
96
TYR
105
B
THR
106
n
97
THR
106
B
ILE
107
n
98
ILE
107
B
ALA
108
n
99
ALA
108
B
ALA
109
n
100
ALA
109
B
LEU
110
n
101
LEU
110
B
LEU
111
n
102
LEU
111
B
SER
112
n
103
SER
112
B
PRO
113
n
104
PRO
113
B
TYR
114
n
105
TYR
114
B
SER
115
n
106
SER
115
B
TYR
116
n
107
TYR
116
B
SER
117
n
108
SER
117
B
THR
118
n
109
THR
118
B
THR
119
n
110
THR
119
B
ALA
120
n
111
ALA
120
B
VAL
121
n
112
VAL
121
B
VAL
122
n
113
VAL
122
B
THR
123
n
114
THR
123
B
ASN
124
n
115
ASN
124
B
n
116
125
B
n
117
126
B
n
118
127
B
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
2
dimeric
6260
-45.4
18950
1760
-10.5
10850
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-x-1,-y,z
crystal symmetry operation
-42.9600000000
0.0000000000
0.0000000000
A
O
SER
23
A
O
SER
14
A
N
ASP
18
A
N
ASP
9
A
N
MET
13
A
N
MET
4
A
O
ILE
107
A
O
ILE
98
A
N
SER
112
A
N
SER
103
A
O
SER
115
A
O
SER
106
A
N
TYR
116
A
N
TYR
107
B
O
THR
118
B
O
THR
109
B
O
THR
119
B
O
THR
110
B
N
ALA
108
B
N
ALA
99
B
O
ILE
107
B
O
ILE
98
B
N
MET
13
B
N
MET
4
B
N
ASP
18
B
N
ASP
9
B
O
SER
23
B
O
SER
14
A
O
LEU
55
A
O
LEU
46
A
N
VAL
14
A
N
VAL
5
A
N
MET
13
A
N
MET
4
A
O
ILE
107
A
O
ILE
98
A
N
SER
112
A
N
SER
103
A
O
SER
115
A
O
SER
106
A
N
TYR
116
A
N
TYR
107
B
O
THR
118
B
O
THR
109
B
O
THR
119
B
O
THR
110
B
N
ALA
108
B
N
ALA
99
B
O
ILE
107
B
O
ILE
98
B
N
MET
13
B
N
MET
4
B
N
VAL
14
B
N
VAL
5
B
O
LEU
55
B
O
LEU
46
A
O
ALA
45
A
O
ALA
36
A
N
VAL
32
A
N
VAL
23
A
N
HIS
31
A
N
HIS
22
A
O
GLU
72
A
O
GLU
63
A
N
VAL
71
A
N
VAL
62
A
O
VAL
93
A
O
VAL
84
A
N
VAL
94
A
N
VAL
85
B
O
GLU
89
B
O
GLU
80
B
O
VAL
93
B
O
VAL
84
B
N
VAL
71
B
N
VAL
62
B
O
GLU
72
B
O
GLU
63
B
N
HIS
31
B
N
HIS
22
B
N
VAL
32
B
N
VAL
23
B
O
ALA
45
B
O
ALA
36
1
A
5NS
1
C
5NS
1
B
5NS
1
D
5NS
1
B
5NS
1
D
5NS
1
B
5NS
128
E
5NS
1
B
5NS
128
E
5NS
1
A
HOH
151
F
HOH
1
B
HOH
137
G
HOH
1
A
LYS
126
A
LYS
117
1
Y
1
A
GLU
127
A
GLU
118
1
Y
1
B
PRO
125
B
PRO
116
1
Y
1
B
LYS
126
B
LYS
117
1
Y
1
B
GLU
127
B
GLU
118
1
Y
1
B
CA
SER
100
PLANAR
1
A
A
OD2
O
ASP
HOH
99
199
1.78
B
1
B
B
O12
O
5NS
HOH
128
187
1.82
C
1
B
B
O
O
HOH
HOH
139
186
2.13
1
A
A
OH
O
TYR
HOH
116
157
2.18
1
6.73
0.90
118.30
125.03
B
B
B
CB
CG
OD1
ASP
ASP
ASP
18
18
18
N
1
17.17
2.70
111.00
128.17
B
B
B
N
CA
C
SER
SER
SER
100
100
100
N
1
B
B
O12
O
5NS
HOH
1
143
1.89
B
1_555
2_455
1
A
A
NZ
O
LYS
HOH
48
160
2.01
C
1_555
4_454
1
B
B
NZ
O
LYS
HOH
15
142
2.13
A
1_555
2_455
1
B
B
O13
O
5NS
HOH
128
187
2.15
C
1_555
2_455
1
B
PHE
44
-131.23
-42.06
1
B
PRO
102
-41.85
160.74
25.477
0.020
0.000
0.000
-0.020
0.000
0.010
0.958
0.932
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.239
0.191
0.194
0.194
1.870
38.400
1017
20234
19755
5.100
98.360
3.763
0.114
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.166
0.154
0.800
0.800
1.200
PDB entry 3CFM
MAXIMUM LIKELIHOOD
MASK
1.870
38.400
141
2115
45
0
1929
0.019
0.022
2042
1.664
1.968
2810
6.741
5.000
261
31.837
23.953
86
16.262
15.000
319
21.345
15.000
9
0.185
0.200
304
0.008
0.020
1599
0.215
0.200
853
0.313
0.200
1333
0.193
0.200
156
0.225
0.200
99
0.361
0.200
26
1.229
1.500
1279
1.963
2.000
2045
2.948
3.000
916
4.556
4.500
765
0.328
0.298
1.920
56
1282
1338
20
92.720
23.6
1.87
85.749
3CFT
20234
19759
2
2
0.059
0.059
1
9.700
4.100
96.800
0.457
1.87
1.96
1.6
9788
2423
0.457
4.00
83.10
0.318
1.96
2.08
2.4
11099
2692
0.318
4.10
98.00
0.189
2.08
2.22
4.0
10548
2561
0.189
4.10
98.40
0.154
2.22
2.40
4.8
9899
2421
0.154
4.10
99.00
0.105
2.40
2.63
6.9
9327
2238
0.105
4.20
99.60
0.064
2.63
2.94
11.4
8617
2046
0.064
4.20
99.70
0.042
2.94
3.40
16.1
7684
1829
0.042
4.20
100.00
0.034
3.40
4.16
17.2
6540
1561
0.034
4.20
100.00
0.024
4.16
5.88
19.3
5160
1252
0.024
4.10
100.00
0.025
5.88
42.96
16.8
2786
736
0.025
3.80
99.60
data reduction
A.G.W. Leslie
andrew@mrc-lmb.cam.ac.uk
http://www.mrc-lmb.cam.ac.uk/harry/mosflm/
MOSFLM
package
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data collection
MAR345dtb
Crystal structure of human transthyretin in complex with 1-amino-5-naphthalene sulfonate
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ASP
74
A
ASP
65
HELX_P
A
ALA
81
A
ALA
72
1
1
8
B
ASP
74
B
ASP
65
HELX_P
B
LEU
82
B
LEU
73
1
2
9
TRANSPORT PROTEIN
human wild-type transthyretin, thyroxin, amyloid, familial amyloid polyneurophaty, Disease mutation, Glycoprotein, Hormone, Polymorphism, Polyneuropathy, Retinol-binding, Secreted, Thyroid hormone, Transport, Vitamin A, TRANSPORT PROTEIN
TTHY_HUMAN
UNP
1
30
P02766
CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE
HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE
30
147
3CFT
10
127
P02766
A
1
1
118
30
147
3CFT
10
127
P02766
B
1
1
118
8
8
8
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
23
A
SER
14
A
PRO
24
A
PRO
15
A
LEU
12
A
LEU
3
A
ASP
18
A
ASP
9
A
ARG
104
A
ARG
95
A
SER
112
A
SER
103
A
SER
115
A
SER
106
A
THR
123
A
THR
114
B
SER
115
B
SER
106
B
THR
123
B
THR
114
B
ARG
104
B
ARG
95
B
SER
112
B
SER
103
B
LEU
12
B
LEU
3
B
ASP
18
B
ASP
9
B
SER
23
B
SER
14
B
PRO
24
B
PRO
15
A
GLU
54
A
GLU
45
A
LEU
55
A
LEU
46
A
LEU
12
A
LEU
3
A
ASP
18
A
ASP
9
A
ARG
104
A
ARG
95
A
SER
112
A
SER
103
A
SER
115
A
SER
106
A
THR
123
A
THR
114
B
SER
115
B
SER
106
B
THR
123
B
THR
114
B
ARG
104
B
ARG
95
B
SER
112
B
SER
103
B
LEU
12
B
LEU
3
B
ASP
18
B
ASP
9
B
GLU
54
B
GLU
45
B
LEU
55
B
LEU
46
A
TRP
41
A
TRP
32
A
LYS
48
A
LYS
39
A
ALA
29
A
ALA
20
A
LYS
35
A
LYS
26
A
GLY
67
A
GLY
58
A
ILE
73
A
ILE
64
A
HIS
88
A
HIS
79
A
ALA
97
A
ALA
88
B
HIS
88
B
HIS
79
B
ALA
97
B
ALA
88
B
GLY
67
B
GLY
58
B
ILE
73
B
ILE
64
B
ALA
29
B
ALA
20
B
LYS
35
B
LYS
26
B
TRP
41
B
TRP
32
B
LYS
48
B
LYS
39
BINDING SITE FOR RESIDUE 5NS A 1
A
5NS
1
Software
4
BINDING SITE FOR RESIDUE 5NS B 1
B
5NS
1
Software
5
BINDING SITE FOR RESIDUE 5NS B 128
B
5NS
128
Software
4
A
LYS
15
A
LYS
6
4
1_555
A
LEU
17
A
LEU
8
4
1_555
A
ALA
108
A
ALA
99
4
2_455
A
ALA
109
A
ALA
100
4
2_455
B
LEU
17
B
LEU
8
5
1_555
B
ALA
108
B
ALA
99
5
1_555
B
LEU
110
B
LEU
101
5
1_555
B
SER
117
B
SER
108
5
1_555
B
THR
119
B
THR
110
5
2_455
B
LYS
15
B
LYS
6
4
2_455
B
LEU
17
B
LEU
8
4
2_455
B
ALA
108
B
ALA
99
4
1_555
B
LEU
110
B
LEU
101
4
2_455
18
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