0.023277 0.000000 0.000000 0.000000 0.011681 0.000000 0.000000 0.000000 0.015674 0.000000 0.000000 0.000000 Lima, L.-M.T.R. Foguel, D. Polikarpov, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 42.960 85.610 63.800 C10 H9 N O3 S 223.248 5-aminonaphthalene-1-sulfonic acid non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C N 9 N O N 10 N S N 11 N O N 12 N O Y 13 N C Y 14 N C N 15 N N N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N N N 26 S C N 27 N C N 28 N O N 29 N C N 30 N O N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N C N 44 N C N 45 N N N 46 N C N 47 N N N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N N N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N O N 89 N O N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 S C N 114 N C N 115 N O N 116 N C N 117 N C N 118 N C N 119 N O N 120 N O N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 N C N 133 N C N 134 N O N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C Y 146 N C Y 147 N N Y 148 N C Y 149 N C Y 150 N N N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N O N 163 N H N 164 N H N 165 N N N 166 S C N 167 N C N 168 N O N 169 S C N 170 N C N 171 N C N 172 N C N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N C N 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N C N 217 N N N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N S N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N O N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 R C N 313 N O N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N N Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H Y 1 N doub Y 2 N sing N 3 N sing Y 4 N doub N 5 N sing Y 6 N sing N 7 N sing Y 8 N sing Y 9 N doub Y 10 N sing Y 11 N doub N 12 N sing Y 13 N sing Y 14 N doub N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N doub Y 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N doub Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing Y 254 N doub Y 255 N sing Y 256 N sing N 257 N sing Y 258 N doub N 259 N sing Y 260 N doub N 261 N sing Y 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N doub Y 324 N sing Y 325 N sing N 326 N sing Y 327 N doub Y 328 N sing Y 329 N sing N 330 N sing Y 331 N sing Y 332 N doub N 333 N sing Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing UK Bioorg.Med.Chem. BMECEP 1200 0968-0896 18 100 110 10.1016/j.bmc.2009.11.025 19954984 Identification of a novel ligand binding motif in the transthyretin channel. 2010 10.2210/pdb3cft/pdb pdb_00003cft 100 1 Osmic IMAGE PLATE 2005-06-02 MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU ULTRAX 18 12961.511 Transthyretin UNP residues 30-147 2 man polymer 223.248 5-aminonaphthalene-1-sulfonic acid 3 syn non-polymer 18.015 water 141 nat water Prealbumin, TBPA, TTR, ATTR no no CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample TTR, PALB 9606 Homo sapiens 562 Escherichia coli BL21(DE3) 1 2.26 45.64 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_special_symmetry struct_site repository Initial release Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2009-03-03 1 1 2011-07-13 1 2 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of the apo form of human wild-type transthyretin Same protein in complex with 1-anilino-8-naphthalene sulfonate Same protein in complex with diclofenac RCSB Y RCSB 2008-03-04 REL REL 5NS 5-aminonaphthalene-1-sulfonic acid HOH water 3CFM PDB entry 3CFM PDB experimental model 5NS 1 2 5NS 5NS 1 A 5NS 1 2 5NS 5NS 1 B 5NS 1 2 5NS 5NS 128 B HOH 1 3 HOH HOH 128 A HOH 2 3 HOH HOH 129 A HOH 3 3 HOH HOH 130 A HOH 5 3 HOH HOH 131 A HOH 6 3 HOH HOH 132 A HOH 8 3 HOH HOH 133 A HOH 9 3 HOH HOH 134 A HOH 10 3 HOH HOH 135 A HOH 11 3 HOH HOH 136 A HOH 12 3 HOH HOH 137 A HOH 14 3 HOH HOH 138 A HOH 16 3 HOH HOH 139 A HOH 17 3 HOH HOH 140 A HOH 18 3 HOH HOH 141 A HOH 19 3 HOH HOH 142 A HOH 22 3 HOH HOH 143 A HOH 23 3 HOH HOH 144 A HOH 24 3 HOH HOH 145 A HOH 25 3 HOH HOH 146 A HOH 26 3 HOH HOH 147 A HOH 27 3 HOH HOH 148 A HOH 29 3 HOH HOH 149 A HOH 30 3 HOH HOH 150 A HOH 32 3 HOH HOH 151 A HOH 35 3 HOH HOH 152 A HOH 36 3 HOH HOH 153 A HOH 37 3 HOH HOH 154 A HOH 43 3 HOH HOH 155 A HOH 44 3 HOH HOH 156 A HOH 46 3 HOH HOH 157 A HOH 47 3 HOH HOH 158 A HOH 48 3 HOH HOH 159 A HOH 50 3 HOH HOH 160 A HOH 52 3 HOH HOH 161 A HOH 55 3 HOH HOH 162 A HOH 57 3 HOH HOH 163 A HOH 58 3 HOH HOH 164 A HOH 60 3 HOH HOH 165 A HOH 62 3 HOH HOH 166 A HOH 65 3 HOH HOH 167 A HOH 66 3 HOH HOH 168 A HOH 68 3 HOH HOH 169 A HOH 69 3 HOH HOH 170 A HOH 70 3 HOH HOH 171 A HOH 72 3 HOH HOH 172 A HOH 74 3 HOH HOH 173 A HOH 78 3 HOH HOH 174 A HOH 79 3 HOH HOH 175 A HOH 80 3 HOH HOH 176 A HOH 81 3 HOH HOH 177 A HOH 85 3 HOH HOH 178 A HOH 87 3 HOH HOH 179 A HOH 88 3 HOH HOH 180 A HOH 89 3 HOH HOH 181 A HOH 90 3 HOH HOH 182 A HOH 92 3 HOH HOH 183 A HOH 95 3 HOH HOH 184 A HOH 97 3 HOH HOH 185 A HOH 98 3 HOH HOH 186 A HOH 101 3 HOH HOH 187 A HOH 102 3 HOH HOH 188 A HOH 103 3 HOH HOH 189 A HOH 105 3 HOH HOH 190 A HOH 107 3 HOH HOH 191 A HOH 108 3 HOH HOH 192 A HOH 110 3 HOH HOH 193 A HOH 111 3 HOH HOH 194 A HOH 112 3 HOH HOH 195 A HOH 113 3 HOH HOH 196 A HOH 114 3 HOH HOH 197 A HOH 115 3 HOH HOH 198 A HOH 116 3 HOH HOH 199 A HOH 121 3 HOH HOH 200 A HOH 122 3 HOH HOH 201 A HOH 124 3 HOH HOH 202 A HOH 132 3 HOH HOH 203 A HOH 133 3 HOH HOH 204 A HOH 138 3 HOH HOH 205 A HOH 139 3 HOH HOH 206 A HOH 141 3 HOH HOH 207 A HOH 4 3 HOH HOH 129 B HOH 7 3 HOH HOH 130 B HOH 13 3 HOH HOH 131 B HOH 15 3 HOH HOH 132 B HOH 20 3 HOH HOH 133 B HOH 21 3 HOH HOH 134 B HOH 28 3 HOH HOH 135 B HOH 31 3 HOH HOH 136 B HOH 33 3 HOH HOH 137 B HOH 34 3 HOH HOH 138 B HOH 38 3 HOH HOH 139 B HOH 39 3 HOH HOH 140 B HOH 40 3 HOH HOH 141 B HOH 41 3 HOH HOH 142 B HOH 42 3 HOH HOH 143 B HOH 45 3 HOH HOH 144 B HOH 49 3 HOH HOH 145 B HOH 51 3 HOH HOH 146 B HOH 53 3 HOH HOH 147 B HOH 54 3 HOH HOH 148 B HOH 56 3 HOH HOH 149 B HOH 59 3 HOH HOH 150 B HOH 61 3 HOH HOH 151 B HOH 63 3 HOH HOH 152 B HOH 64 3 HOH HOH 153 B HOH 67 3 HOH HOH 154 B HOH 71 3 HOH HOH 155 B HOH 73 3 HOH HOH 156 B HOH 75 3 HOH HOH 157 B HOH 76 3 HOH HOH 158 B HOH 77 3 HOH HOH 159 B HOH 82 3 HOH HOH 160 B HOH 83 3 HOH HOH 161 B HOH 84 3 HOH HOH 162 B HOH 86 3 HOH HOH 163 B HOH 91 3 HOH HOH 164 B HOH 93 3 HOH HOH 165 B HOH 96 3 HOH HOH 166 B HOH 100 3 HOH HOH 167 B HOH 104 3 HOH HOH 168 B HOH 106 3 HOH HOH 169 B HOH 109 3 HOH HOH 170 B HOH 117 3 HOH HOH 171 B HOH 118 3 HOH HOH 172 B HOH 119 3 HOH HOH 173 B HOH 120 3 HOH HOH 174 B HOH 123 3 HOH HOH 175 B HOH 125 3 HOH HOH 176 B HOH 126 3 HOH HOH 177 B HOH 127 3 HOH HOH 178 B HOH 128 3 HOH HOH 179 B HOH 129 3 HOH HOH 180 B HOH 130 3 HOH HOH 181 B HOH 131 3 HOH HOH 182 B HOH 134 3 HOH HOH 183 B HOH 135 3 HOH HOH 184 B HOH 136 3 HOH HOH 185 B HOH 137 3 HOH HOH 186 B HOH 140 3 HOH HOH 187 B HOH 142 3 HOH HOH 188 B HOH 143 3 HOH HOH 189 B 2.060 2.060 42.810 42.810 CYS 10 n 1 CYS 10 A PRO 11 n 2 PRO 11 A LEU 12 n 3 LEU 12 A MET 13 n 4 MET 13 A VAL 14 n 5 VAL 14 A LYS 15 n 6 LYS 15 A VAL 16 n 7 VAL 16 A LEU 17 n 8 LEU 17 A ASP 18 n 9 ASP 18 A ALA 19 n 10 ALA 19 A VAL 20 n 11 VAL 20 A ARG 21 n 12 ARG 21 A GLY 22 n 13 GLY 22 A SER 23 n 14 SER 23 A PRO 24 n 15 PRO 24 A ALA 25 n 16 ALA 25 A ILE 26 n 17 ILE 26 A ASN 27 n 18 ASN 27 A VAL 28 n 19 VAL 28 A ALA 29 n 20 ALA 29 A VAL 30 n 21 VAL 30 A HIS 31 n 22 HIS 31 A VAL 32 n 23 VAL 32 A PHE 33 n 24 PHE 33 A ARG 34 n 25 ARG 34 A LYS 35 n 26 LYS 35 A ALA 36 n 27 ALA 36 A ALA 37 n 28 ALA 37 A ASP 38 n 29 ASP 38 A ASP 39 n 30 ASP 39 A THR 40 n 31 THR 40 A TRP 41 n 32 TRP 41 A GLU 42 n 33 GLU 42 A PRO 43 n 34 PRO 43 A PHE 44 n 35 PHE 44 A ALA 45 n 36 ALA 45 A SER 46 n 37 SER 46 A GLY 47 n 38 GLY 47 A LYS 48 n 39 LYS 48 A THR 49 n 40 THR 49 A SER 50 n 41 SER 50 A GLU 51 n 42 GLU 51 A SER 52 n 43 SER 52 A GLY 53 n 44 GLY 53 A GLU 54 n 45 GLU 54 A LEU 55 n 46 LEU 55 A HIS 56 n 47 HIS 56 A GLY 57 n 48 GLY 57 A LEU 58 n 49 LEU 58 A THR 59 n 50 THR 59 A THR 60 n 51 THR 60 A GLU 61 n 52 GLU 61 A GLU 62 n 53 GLU 62 A GLU 63 n 54 GLU 63 A PHE 64 n 55 PHE 64 A VAL 65 n 56 VAL 65 A GLU 66 n 57 GLU 66 A GLY 67 n 58 GLY 67 A ILE 68 n 59 ILE 68 A TYR 69 n 60 TYR 69 A LYS 70 n 61 LYS 70 A VAL 71 n 62 VAL 71 A GLU 72 n 63 GLU 72 A ILE 73 n 64 ILE 73 A ASP 74 n 65 ASP 74 A THR 75 n 66 THR 75 A LYS 76 n 67 LYS 76 A SER 77 n 68 SER 77 A TYR 78 n 69 TYR 78 A TRP 79 n 70 TRP 79 A LYS 80 n 71 LYS 80 A ALA 81 n 72 ALA 81 A LEU 82 n 73 LEU 82 A GLY 83 n 74 GLY 83 A ILE 84 n 75 ILE 84 A SER 85 n 76 SER 85 A PRO 86 n 77 PRO 86 A PHE 87 n 78 PHE 87 A HIS 88 n 79 HIS 88 A GLU 89 n 80 GLU 89 A HIS 90 n 81 HIS 90 A ALA 91 n 82 ALA 91 A GLU 92 n 83 GLU 92 A VAL 93 n 84 VAL 93 A VAL 94 n 85 VAL 94 A PHE 95 n 86 PHE 95 A THR 96 n 87 THR 96 A ALA 97 n 88 ALA 97 A ASN 98 n 89 ASN 98 A ASP 99 n 90 ASP 99 A SER 100 n 91 SER 100 A GLY 101 n 92 GLY 101 A PRO 102 n 93 PRO 102 A ARG 103 n 94 ARG 103 A ARG 104 n 95 ARG 104 A TYR 105 n 96 TYR 105 A THR 106 n 97 THR 106 A ILE 107 n 98 ILE 107 A ALA 108 n 99 ALA 108 A ALA 109 n 100 ALA 109 A LEU 110 n 101 LEU 110 A LEU 111 n 102 LEU 111 A SER 112 n 103 SER 112 A PRO 113 n 104 PRO 113 A TYR 114 n 105 TYR 114 A SER 115 n 106 SER 115 A TYR 116 n 107 TYR 116 A SER 117 n 108 SER 117 A THR 118 n 109 THR 118 A THR 119 n 110 THR 119 A ALA 120 n 111 ALA 120 A VAL 121 n 112 VAL 121 A VAL 122 n 113 VAL 122 A THR 123 n 114 THR 123 A ASN 124 n 115 ASN 124 A PRO 125 n 116 PRO 125 A n 117 126 A n 118 127 A CYS 10 n 1 CYS 10 B PRO 11 n 2 PRO 11 B LEU 12 n 3 LEU 12 B MET 13 n 4 MET 13 B VAL 14 n 5 VAL 14 B LYS 15 n 6 LYS 15 B VAL 16 n 7 VAL 16 B LEU 17 n 8 LEU 17 B ASP 18 n 9 ASP 18 B ALA 19 n 10 ALA 19 B VAL 20 n 11 VAL 20 B ARG 21 n 12 ARG 21 B GLY 22 n 13 GLY 22 B SER 23 n 14 SER 23 B PRO 24 n 15 PRO 24 B ALA 25 n 16 ALA 25 B ILE 26 n 17 ILE 26 B ASN 27 n 18 ASN 27 B VAL 28 n 19 VAL 28 B ALA 29 n 20 ALA 29 B VAL 30 n 21 VAL 30 B HIS 31 n 22 HIS 31 B VAL 32 n 23 VAL 32 B PHE 33 n 24 PHE 33 B ARG 34 n 25 ARG 34 B LYS 35 n 26 LYS 35 B ALA 36 n 27 ALA 36 B ALA 37 n 28 ALA 37 B ASP 38 n 29 ASP 38 B ASP 39 n 30 ASP 39 B THR 40 n 31 THR 40 B TRP 41 n 32 TRP 41 B GLU 42 n 33 GLU 42 B PRO 43 n 34 PRO 43 B PHE 44 n 35 PHE 44 B ALA 45 n 36 ALA 45 B SER 46 n 37 SER 46 B GLY 47 n 38 GLY 47 B LYS 48 n 39 LYS 48 B THR 49 n 40 THR 49 B SER 50 n 41 SER 50 B GLU 51 n 42 GLU 51 B SER 52 n 43 SER 52 B GLY 53 n 44 GLY 53 B GLU 54 n 45 GLU 54 B LEU 55 n 46 LEU 55 B HIS 56 n 47 HIS 56 B GLY 57 n 48 GLY 57 B LEU 58 n 49 LEU 58 B THR 59 n 50 THR 59 B THR 60 n 51 THR 60 B GLU 61 n 52 GLU 61 B GLU 62 n 53 GLU 62 B GLU 63 n 54 GLU 63 B PHE 64 n 55 PHE 64 B VAL 65 n 56 VAL 65 B GLU 66 n 57 GLU 66 B GLY 67 n 58 GLY 67 B ILE 68 n 59 ILE 68 B TYR 69 n 60 TYR 69 B LYS 70 n 61 LYS 70 B VAL 71 n 62 VAL 71 B GLU 72 n 63 GLU 72 B ILE 73 n 64 ILE 73 B ASP 74 n 65 ASP 74 B THR 75 n 66 THR 75 B LYS 76 n 67 LYS 76 B SER 77 n 68 SER 77 B TYR 78 n 69 TYR 78 B TRP 79 n 70 TRP 79 B LYS 80 n 71 LYS 80 B ALA 81 n 72 ALA 81 B LEU 82 n 73 LEU 82 B GLY 83 n 74 GLY 83 B ILE 84 n 75 ILE 84 B SER 85 n 76 SER 85 B PRO 86 n 77 PRO 86 B PHE 87 n 78 PHE 87 B HIS 88 n 79 HIS 88 B GLU 89 n 80 GLU 89 B HIS 90 n 81 HIS 90 B ALA 91 n 82 ALA 91 B GLU 92 n 83 GLU 92 B VAL 93 n 84 VAL 93 B VAL 94 n 85 VAL 94 B PHE 95 n 86 PHE 95 B THR 96 n 87 THR 96 B ALA 97 n 88 ALA 97 B ASN 98 n 89 ASN 98 B ASP 99 n 90 ASP 99 B SER 100 n 91 SER 100 B GLY 101 n 92 GLY 101 B PRO 102 n 93 PRO 102 B ARG 103 n 94 ARG 103 B ARG 104 n 95 ARG 104 B TYR 105 n 96 TYR 105 B THR 106 n 97 THR 106 B ILE 107 n 98 ILE 107 B ALA 108 n 99 ALA 108 B ALA 109 n 100 ALA 109 B LEU 110 n 101 LEU 110 B LEU 111 n 102 LEU 111 B SER 112 n 103 SER 112 B PRO 113 n 104 PRO 113 B TYR 114 n 105 TYR 114 B SER 115 n 106 SER 115 B TYR 116 n 107 TYR 116 B SER 117 n 108 SER 117 B THR 118 n 109 THR 118 B THR 119 n 110 THR 119 B ALA 120 n 111 ALA 120 B VAL 121 n 112 VAL 121 B VAL 122 n 113 VAL 122 B THR 123 n 114 THR 123 B ASN 124 n 115 ASN 124 B n 116 125 B n 117 126 B n 118 127 B software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 2 dimeric 6260 -45.4 18950 1760 -10.5 10850 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_455 -x-1,-y,z crystal symmetry operation -42.9600000000 0.0000000000 0.0000000000 A O SER 23 A O SER 14 A N ASP 18 A N ASP 9 A N MET 13 A N MET 4 A O ILE 107 A O ILE 98 A N SER 112 A N SER 103 A O SER 115 A O SER 106 A N TYR 116 A N TYR 107 B O THR 118 B O THR 109 B O THR 119 B O THR 110 B N ALA 108 B N ALA 99 B O ILE 107 B O ILE 98 B N MET 13 B N MET 4 B N ASP 18 B N ASP 9 B O SER 23 B O SER 14 A O LEU 55 A O LEU 46 A N VAL 14 A N VAL 5 A N MET 13 A N MET 4 A O ILE 107 A O ILE 98 A N SER 112 A N SER 103 A O SER 115 A O SER 106 A N TYR 116 A N TYR 107 B O THR 118 B O THR 109 B O THR 119 B O THR 110 B N ALA 108 B N ALA 99 B O ILE 107 B O ILE 98 B N MET 13 B N MET 4 B N VAL 14 B N VAL 5 B O LEU 55 B O LEU 46 A O ALA 45 A O ALA 36 A N VAL 32 A N VAL 23 A N HIS 31 A N HIS 22 A O GLU 72 A O GLU 63 A N VAL 71 A N VAL 62 A O VAL 93 A O VAL 84 A N VAL 94 A N VAL 85 B O GLU 89 B O GLU 80 B O VAL 93 B O VAL 84 B N VAL 71 B N VAL 62 B O GLU 72 B O GLU 63 B N HIS 31 B N HIS 22 B N VAL 32 B N VAL 23 B O ALA 45 B O ALA 36 1 A 5NS 1 C 5NS 1 B 5NS 1 D 5NS 1 B 5NS 1 D 5NS 1 B 5NS 128 E 5NS 1 B 5NS 128 E 5NS 1 A HOH 151 F HOH 1 B HOH 137 G HOH 1 A LYS 126 A LYS 117 1 Y 1 A GLU 127 A GLU 118 1 Y 1 B PRO 125 B PRO 116 1 Y 1 B LYS 126 B LYS 117 1 Y 1 B GLU 127 B GLU 118 1 Y 1 B CA SER 100 PLANAR 1 A A OD2 O ASP HOH 99 199 1.78 B 1 B B O12 O 5NS HOH 128 187 1.82 C 1 B B O O HOH HOH 139 186 2.13 1 A A OH O TYR HOH 116 157 2.18 1 6.73 0.90 118.30 125.03 B B B CB CG OD1 ASP ASP ASP 18 18 18 N 1 17.17 2.70 111.00 128.17 B B B N CA C SER SER SER 100 100 100 N 1 B B O12 O 5NS HOH 1 143 1.89 B 1_555 2_455 1 A A NZ O LYS HOH 48 160 2.01 C 1_555 4_454 1 B B NZ O LYS HOH 15 142 2.13 A 1_555 2_455 1 B B O13 O 5NS HOH 128 187 2.15 C 1_555 2_455 1 B PHE 44 -131.23 -42.06 1 B PRO 102 -41.85 160.74 25.477 0.020 0.000 0.000 -0.020 0.000 0.010 0.958 0.932 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.239 0.191 0.194 0.194 1.870 38.400 1017 20234 19755 5.100 98.360 3.763 0.114 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.166 0.154 0.800 0.800 1.200 PDB entry 3CFM MAXIMUM LIKELIHOOD MASK 1.870 38.400 141 2115 45 0 1929 0.019 0.022 2042 1.664 1.968 2810 6.741 5.000 261 31.837 23.953 86 16.262 15.000 319 21.345 15.000 9 0.185 0.200 304 0.008 0.020 1599 0.215 0.200 853 0.313 0.200 1333 0.193 0.200 156 0.225 0.200 99 0.361 0.200 26 1.229 1.500 1279 1.963 2.000 2045 2.948 3.000 916 4.556 4.500 765 0.328 0.298 1.920 56 1282 1338 20 92.720 23.6 1.87 85.749 3CFT 20234 19759 2 2 0.059 0.059 1 9.700 4.100 96.800 0.457 1.87 1.96 1.6 9788 2423 0.457 4.00 83.10 0.318 1.96 2.08 2.4 11099 2692 0.318 4.10 98.00 0.189 2.08 2.22 4.0 10548 2561 0.189 4.10 98.40 0.154 2.22 2.40 4.8 9899 2421 0.154 4.10 99.00 0.105 2.40 2.63 6.9 9327 2238 0.105 4.20 99.60 0.064 2.63 2.94 11.4 8617 2046 0.064 4.20 99.70 0.042 2.94 3.40 16.1 7684 1829 0.042 4.20 100.00 0.034 3.40 4.16 17.2 6540 1561 0.034 4.20 100.00 0.024 4.16 5.88 19.3 5160 1252 0.024 4.10 100.00 0.025 5.88 42.96 16.8 2786 736 0.025 3.80 99.60 data reduction A.G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other phasing A. Vagin alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 data collection MAR345dtb Crystal structure of human transthyretin in complex with 1-amino-5-naphthalene sulfonate 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N A ASP 74 A ASP 65 HELX_P A ALA 81 A ALA 72 1 1 8 B ASP 74 B ASP 65 HELX_P B LEU 82 B LEU 73 1 2 9 TRANSPORT PROTEIN human wild-type transthyretin, thyroxin, amyloid, familial amyloid polyneurophaty, Disease mutation, Glycoprotein, Hormone, Polymorphism, Polyneuropathy, Retinol-binding, Secreted, Thyroid hormone, Transport, Vitamin A, TRANSPORT PROTEIN TTHY_HUMAN UNP 1 30 P02766 CPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE HAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE 30 147 3CFT 10 127 P02766 A 1 1 118 30 147 3CFT 10 127 P02766 B 1 1 118 8 8 8 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 23 A SER 14 A PRO 24 A PRO 15 A LEU 12 A LEU 3 A ASP 18 A ASP 9 A ARG 104 A ARG 95 A SER 112 A SER 103 A SER 115 A SER 106 A THR 123 A THR 114 B SER 115 B SER 106 B THR 123 B THR 114 B ARG 104 B ARG 95 B SER 112 B SER 103 B LEU 12 B LEU 3 B ASP 18 B ASP 9 B SER 23 B SER 14 B PRO 24 B PRO 15 A GLU 54 A GLU 45 A LEU 55 A LEU 46 A LEU 12 A LEU 3 A ASP 18 A ASP 9 A ARG 104 A ARG 95 A SER 112 A SER 103 A SER 115 A SER 106 A THR 123 A THR 114 B SER 115 B SER 106 B THR 123 B THR 114 B ARG 104 B ARG 95 B SER 112 B SER 103 B LEU 12 B LEU 3 B ASP 18 B ASP 9 B GLU 54 B GLU 45 B LEU 55 B LEU 46 A TRP 41 A TRP 32 A LYS 48 A LYS 39 A ALA 29 A ALA 20 A LYS 35 A LYS 26 A GLY 67 A GLY 58 A ILE 73 A ILE 64 A HIS 88 A HIS 79 A ALA 97 A ALA 88 B HIS 88 B HIS 79 B ALA 97 B ALA 88 B GLY 67 B GLY 58 B ILE 73 B ILE 64 B ALA 29 B ALA 20 B LYS 35 B LYS 26 B TRP 41 B TRP 32 B LYS 48 B LYS 39 BINDING SITE FOR RESIDUE 5NS A 1 A 5NS 1 Software 4 BINDING SITE FOR RESIDUE 5NS B 1 B 5NS 1 Software 5 BINDING SITE FOR RESIDUE 5NS B 128 B 5NS 128 Software 4 A LYS 15 A LYS 6 4 1_555 A LEU 17 A LEU 8 4 1_555 A ALA 108 A ALA 99 4 2_455 A ALA 109 A ALA 100 4 2_455 B LEU 17 B LEU 8 5 1_555 B ALA 108 B ALA 99 5 1_555 B LEU 110 B LEU 101 5 1_555 B SER 117 B SER 108 5 1_555 B THR 119 B THR 110 5 2_455 B LYS 15 B LYS 6 4 2_455 B LEU 17 B LEU 8 4 2_455 B ALA 108 B ALA 99 4 1_555 B LEU 110 B LEU 101 4 2_455 18 P 21 21 2