0.012212
0.007051
0.000000
0.000000
0.014101
0.000000
0.000000
0.000000
0.014158
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
81.886
81.886
70.633
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of OsmC-like hydroperoxide resistance protein (YP_509982.1) from Jannaschia sp. CCS1 at 1.70 A resolution
10.2210/pdb3cje/pdb
pdb_00003cje
100
1
1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing
CCD
2008-02-10
ADSC QUANTUM 315r
Double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.978835
1.0
BL1-5
SSRL
0.978835
SYNCHROTRON
SSRL BEAMLINE BL1-5
18414.389
OsmC-like protein
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
92.094
GLYCEROL
8
syn
non-polymer
18.015
water
138
nat
water
no
yes
G(MSE)ALTPDQ(MSE)PDRAEVVFTCNGKAVGK(MSE)RNELDVA(MSE)VKPFEERFALATDEGAFHGGDASAPPPLA
LFIAGLTGCV(MSE)TQIRAFAKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKK
GCFLEQTLGQANTIRHRLKVGDTFIDA
GMALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPPPLALFIAGLTGCVMTQIRA
FAKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKV
GDTFIDA
A
371655
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Jannaschia
CCS1
Escherichia
sample
YP_509982.1, Jann_2040
290400
Jannaschia sp.
562
Escherichia coli
HK100
Plasmid
SpeedET
1
3.71
66.87
VAPOR DIFFUSION, SITTING DROP
8.57
NANODROP, 1.545M Ammonium dihydrogen phosphate, 0.1M Tris-HCl pH 8.57, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
software
struct_conn
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Source and taxonomy
Version format compliance
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2008-03-25
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-24
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2008-03-12
REL
REL
PO4
PHOSPHATE ION
GOL
GLYCEROL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG
MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE
LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
PO4
1
2
PO4
PO4
167
A
GOL
2
3
GOL
GOL
168
A
GOL
3
3
GOL
GOL
169
A
GOL
4
3
GOL
GOL
170
A
GOL
5
3
GOL
GOL
171
A
GOL
6
3
GOL
GOL
172
A
GOL
7
3
GOL
GOL
173
A
GOL
8
3
GOL
GOL
174
A
GOL
9
3
GOL
GOL
175
A
HOH
10
4
HOH
HOH
176
A
HOH
11
4
HOH
HOH
177
A
HOH
12
4
HOH
HOH
178
A
HOH
13
4
HOH
HOH
179
A
HOH
14
4
HOH
HOH
180
A
HOH
15
4
HOH
HOH
181
A
HOH
16
4
HOH
HOH
182
A
HOH
17
4
HOH
HOH
183
A
HOH
18
4
HOH
HOH
184
A
HOH
19
4
HOH
HOH
185
A
HOH
20
4
HOH
HOH
186
A
HOH
21
4
HOH
HOH
187
A
HOH
22
4
HOH
HOH
188
A
HOH
23
4
HOH
HOH
189
A
HOH
24
4
HOH
HOH
190
A
HOH
25
4
HOH
HOH
191
A
HOH
26
4
HOH
HOH
192
A
HOH
27
4
HOH
HOH
193
A
HOH
28
4
HOH
HOH
194
A
HOH
29
4
HOH
HOH
195
A
HOH
30
4
HOH
HOH
196
A
HOH
31
4
HOH
HOH
197
A
HOH
32
4
HOH
HOH
198
A
HOH
33
4
HOH
HOH
199
A
HOH
34
4
HOH
HOH
200
A
HOH
35
4
HOH
HOH
201
A
HOH
36
4
HOH
HOH
202
A
HOH
37
4
HOH
HOH
203
A
HOH
38
4
HOH
HOH
204
A
HOH
39
4
HOH
HOH
205
A
HOH
40
4
HOH
HOH
206
A
HOH
41
4
HOH
HOH
207
A
HOH
42
4
HOH
HOH
208
A
HOH
43
4
HOH
HOH
209
A
HOH
44
4
HOH
HOH
210
A
HOH
45
4
HOH
HOH
211
A
HOH
46
4
HOH
HOH
212
A
HOH
47
4
HOH
HOH
213
A
HOH
48
4
HOH
HOH
214
A
HOH
49
4
HOH
HOH
215
A
HOH
50
4
HOH
HOH
216
A
HOH
51
4
HOH
HOH
217
A
HOH
52
4
HOH
HOH
218
A
HOH
53
4
HOH
HOH
219
A
HOH
54
4
HOH
HOH
220
A
HOH
55
4
HOH
HOH
221
A
HOH
56
4
HOH
HOH
222
A
HOH
57
4
HOH
HOH
223
A
HOH
58
4
HOH
HOH
224
A
HOH
59
4
HOH
HOH
225
A
HOH
60
4
HOH
HOH
226
A
HOH
61
4
HOH
HOH
227
A
HOH
62
4
HOH
HOH
228
A
HOH
63
4
HOH
HOH
229
A
HOH
64
4
HOH
HOH
230
A
HOH
65
4
HOH
HOH
231
A
HOH
66
4
HOH
HOH
232
A
HOH
67
4
HOH
HOH
233
A
HOH
68
4
HOH
HOH
234
A
HOH
69
4
HOH
HOH
235
A
HOH
70
4
HOH
HOH
236
A
HOH
71
4
HOH
HOH
237
A
HOH
72
4
HOH
HOH
238
A
HOH
73
4
HOH
HOH
239
A
HOH
74
4
HOH
HOH
240
A
HOH
75
4
HOH
HOH
241
A
HOH
76
4
HOH
HOH
242
A
HOH
77
4
HOH
HOH
243
A
HOH
78
4
HOH
HOH
244
A
HOH
79
4
HOH
HOH
245
A
HOH
80
4
HOH
HOH
246
A
HOH
81
4
HOH
HOH
247
A
HOH
82
4
HOH
HOH
248
A
HOH
83
4
HOH
HOH
249
A
HOH
84
4
HOH
HOH
250
A
HOH
85
4
HOH
HOH
251
A
HOH
86
4
HOH
HOH
252
A
HOH
87
4
HOH
HOH
253
A
HOH
88
4
HOH
HOH
254
A
HOH
89
4
HOH
HOH
255
A
HOH
90
4
HOH
HOH
256
A
HOH
91
4
HOH
HOH
257
A
HOH
92
4
HOH
HOH
258
A
HOH
93
4
HOH
HOH
259
A
HOH
94
4
HOH
HOH
260
A
HOH
95
4
HOH
HOH
261
A
HOH
96
4
HOH
HOH
262
A
HOH
97
4
HOH
HOH
263
A
HOH
98
4
HOH
HOH
264
A
HOH
99
4
HOH
HOH
265
A
HOH
100
4
HOH
HOH
266
A
HOH
101
4
HOH
HOH
267
A
HOH
102
4
HOH
HOH
268
A
HOH
103
4
HOH
HOH
269
A
HOH
104
4
HOH
HOH
270
A
HOH
105
4
HOH
HOH
271
A
HOH
106
4
HOH
HOH
272
A
HOH
107
4
HOH
HOH
273
A
HOH
108
4
HOH
HOH
274
A
HOH
109
4
HOH
HOH
275
A
HOH
110
4
HOH
HOH
276
A
HOH
111
4
HOH
HOH
277
A
HOH
112
4
HOH
HOH
278
A
HOH
113
4
HOH
HOH
279
A
HOH
114
4
HOH
HOH
280
A
HOH
115
4
HOH
HOH
281
A
HOH
116
4
HOH
HOH
282
A
HOH
117
4
HOH
HOH
283
A
HOH
118
4
HOH
HOH
284
A
HOH
119
4
HOH
HOH
285
A
HOH
120
4
HOH
HOH
286
A
HOH
121
4
HOH
HOH
287
A
HOH
122
4
HOH
HOH
288
A
HOH
123
4
HOH
HOH
289
A
HOH
124
4
HOH
HOH
290
A
HOH
125
4
HOH
HOH
291
A
HOH
126
4
HOH
HOH
292
A
HOH
127
4
HOH
HOH
293
A
HOH
128
4
HOH
HOH
294
A
HOH
129
4
HOH
HOH
295
A
HOH
130
4
HOH
HOH
296
A
HOH
131
4
HOH
HOH
297
A
HOH
132
4
HOH
HOH
298
A
HOH
133
4
HOH
HOH
299
A
HOH
134
4
HOH
HOH
300
A
HOH
135
4
HOH
HOH
301
A
HOH
136
4
HOH
HOH
302
A
HOH
137
4
HOH
HOH
303
A
HOH
138
4
HOH
HOH
304
A
HOH
139
4
HOH
HOH
305
A
HOH
140
4
HOH
HOH
306
A
HOH
141
4
HOH
HOH
307
A
HOH
142
4
HOH
HOH
308
A
HOH
143
4
HOH
HOH
309
A
HOH
144
4
HOH
HOH
310
A
HOH
145
4
HOH
HOH
311
A
HOH
146
4
HOH
HOH
312
A
HOH
147
4
HOH
HOH
313
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
n
11
10
A
ARG
11
n
12
ARG
11
A
ALA
12
n
13
ALA
12
A
GLU
13
n
14
GLU
13
A
VAL
14
n
15
VAL
14
A
VAL
15
n
16
VAL
15
A
PHE
16
n
17
PHE
16
A
THR
17
n
18
THR
17
A
CYS
18
n
19
CYS
18
A
ASN
19
n
20
ASN
19
A
GLY
20
n
21
GLY
20
A
LYS
21
n
22
LYS
21
A
ALA
22
n
23
ALA
22
A
VAL
23
n
24
VAL
23
A
GLY
24
n
25
GLY
24
A
LYS
25
n
26
LYS
25
A
MSE
26
n
27
MSE
26
A
ARG
27
n
28
ARG
27
A
ASN
28
n
29
ASN
28
A
GLU
29
n
30
GLU
29
A
LEU
30
n
31
LEU
30
A
ASP
31
n
32
ASP
31
A
VAL
32
n
33
VAL
32
A
ALA
33
n
34
ALA
33
A
MSE
34
n
35
MSE
34
A
VAL
35
n
36
VAL
35
A
LYS
36
n
37
LYS
36
A
PRO
37
n
38
PRO
37
A
PHE
38
n
39
PHE
38
A
GLU
39
n
40
GLU
39
A
GLU
40
n
41
GLU
40
A
ARG
41
n
42
ARG
41
A
PHE
42
n
43
PHE
42
A
ALA
43
n
44
ALA
43
A
LEU
44
n
45
LEU
44
A
ALA
45
n
46
ALA
45
A
THR
46
n
47
THR
46
A
ASP
47
n
48
ASP
47
A
GLU
48
n
49
GLU
48
A
GLY
49
n
50
GLY
49
A
ALA
50
n
51
ALA
50
A
n
52
51
A
n
53
52
A
n
54
53
A
n
55
54
A
n
56
55
A
n
57
56
A
SER
57
n
58
SER
57
A
ALA
58
n
59
ALA
58
A
PRO
59
n
60
PRO
59
A
PRO
60
n
61
PRO
60
A
PRO
61
n
62
PRO
61
A
LEU
62
n
63
LEU
62
A
ALA
63
n
64
ALA
63
A
LEU
64
n
65
LEU
64
A
PHE
65
n
66
PHE
65
A
ILE
66
n
67
ILE
66
A
ALA
67
n
68
ALA
67
A
GLY
68
n
69
GLY
68
A
LEU
69
n
70
LEU
69
A
THR
70
n
71
THR
70
A
GLY
71
n
72
GLY
71
A
CYS
72
n
73
CYS
72
A
VAL
73
n
74
VAL
73
A
MSE
74
n
75
MSE
74
A
THR
75
n
76
THR
75
A
GLN
76
n
77
GLN
76
A
ILE
77
n
78
ILE
77
A
ARG
78
n
79
ARG
78
A
ALA
79
n
80
ALA
79
A
PHE
80
n
81
PHE
80
A
ALA
81
n
82
ALA
81
A
LYS
82
n
83
LYS
82
A
ARG
83
n
84
ARG
83
A
LEU
84
n
85
LEU
84
A
LYS
85
n
86
LYS
85
A
VAL
86
n
87
VAL
86
A
THR
87
n
88
THR
87
A
VAL
88
n
89
VAL
88
A
THR
89
n
90
THR
89
A
ASP
90
n
91
ASP
90
A
LEU
91
n
92
LEU
91
A
ASP
92
n
93
ASP
92
A
VAL
93
n
94
VAL
93
A
GLU
94
n
95
GLU
94
A
CYS
95
n
96
CYS
95
A
ARG
96
n
97
ARG
96
A
VAL
97
n
98
VAL
97
A
VAL
98
n
99
VAL
98
A
TRP
99
n
100
TRP
99
A
ASP
100
n
101
ASP
100
A
TRP
101
n
102
TRP
101
A
ALA
102
n
103
ALA
102
A
LYS
103
n
104
LYS
103
A
ALA
104
n
105
ALA
104
A
GLY
105
n
106
GLY
105
A
PRO
106
n
107
PRO
106
A
VAL
107
n
108
VAL
107
A
TYR
108
n
109
TYR
108
A
GLU
109
n
110
GLU
109
A
THR
110
n
111
THR
110
A
GLY
111
n
112
GLY
111
A
PRO
112
n
113
PRO
112
A
LYS
113
n
114
LYS
113
A
SER
114
n
115
SER
114
A
PHE
115
n
116
PHE
115
A
GLU
116
n
117
GLU
116
A
ILE
117
n
118
ILE
117
A
ASP
118
n
119
ASP
118
A
ILE
119
n
120
ILE
119
A
ILE
120
n
121
ILE
120
A
LEU
121
n
122
LEU
121
A
HIS
122
n
123
HIS
122
A
SER
123
n
124
SER
123
A
PRO
124
n
125
PRO
124
A
ASP
125
n
126
ASP
125
A
PRO
126
n
127
PRO
126
A
ILE
127
n
128
ILE
127
A
GLU
128
n
129
GLU
128
A
ALA
129
n
130
ALA
129
A
GLN
130
n
131
GLN
130
A
GLN
131
n
132
GLN
131
A
ALA
132
n
133
ALA
132
A
LEU
133
n
134
LEU
133
A
ILE
134
n
135
ILE
134
A
GLU
135
n
136
GLU
135
A
ALA
136
n
137
ALA
136
A
ALA
137
n
138
ALA
137
A
LYS
138
n
139
LYS
138
A
LYS
139
n
140
LYS
139
A
GLY
140
n
141
GLY
140
A
CYS
141
n
142
CYS
141
A
PHE
142
n
143
PHE
142
A
LEU
143
n
144
LEU
143
A
GLU
144
n
145
GLU
144
A
GLN
145
n
146
GLN
145
A
THR
146
n
147
THR
146
A
LEU
147
n
148
LEU
147
A
GLY
148
n
149
GLY
148
A
GLN
149
n
150
GLN
149
A
ALA
150
n
151
ALA
150
A
ASN
151
n
152
ASN
151
A
THR
152
n
153
THR
152
A
ILE
153
n
154
ILE
153
A
ARG
154
n
155
ARG
154
A
HIS
155
n
156
HIS
155
A
ARG
156
n
157
ARG
156
A
LEU
157
n
158
LEU
157
A
LYS
158
n
159
LYS
158
A
VAL
159
n
160
VAL
159
A
GLY
160
n
161
GLY
160
A
ASP
161
n
162
ASP
161
A
THR
162
n
163
THR
162
A
PHE
163
n
164
PHE
163
A
ILE
164
n
165
ILE
164
A
ASP
165
n
166
ASP
165
A
ALA
166
n
167
ALA
166
A
0.1806
-0.0356
-0.0352
0.7600
0.2396
0.4667
0.0198
0.0029
0.0180
-0.0235
-0.0083
-0.0524
-0.0065
-0.0092
-0.0115
-0.0378
-0.0071
-0.0013
-0.0225
-0.0034
-0.0308
refined
-0.0888
67.2756
6.8212
X-RAY DIFFRACTION
A
11
A
12
A
166
A
167
X-RAY DIFFRACTION
1
software_defined_assembly
PISA
2
dimeric
6410
-46.3
13500
A
MSE
26
SELENOMETHIONINE
A
MSE
27
MET
A
MSE
34
SELENOMETHIONINE
A
MSE
35
MET
A
MSE
74
SELENOMETHIONINE
A
MSE
75
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_675
x-y+1,-y+2,-z+1/3
crystal symmetry operation
0.0000000000
141.8307124286
23.5443333333
A
O
LEU
44
A
O
LEU
45
A
N
LEU
30
A
N
LEU
31
A
O
VAL
35
A
O
VAL
36
A
N
VAL
15
A
N
VAL
16
A
N
GLY
20
A
N
GLY
21
A
O
VAL
93
A
O
VAL
94
A
N
ALA
104
A
N
ALA
105
A
O
VAL
107
A
O
VAL
108
A
N
VAL
159
A
N
VAL
160
A
O
THR
162
A
O
THR
163
1
A
HOH
176
K
HOH
1
A
CG
ARG
11
A
CG
ARG
12
1
Y
1
A
CD
ARG
11
A
CD
ARG
12
1
Y
1
A
NE
ARG
11
A
NE
ARG
12
1
Y
1
A
CZ
ARG
11
A
CZ
ARG
12
1
Y
1
A
NH1
ARG
11
A
NH1
ARG
12
1
Y
1
A
NH2
ARG
11
A
NH2
ARG
12
1
Y
1
A
CE
LYS
21
A
CE
LYS
22
1
Y
1
A
NZ
LYS
21
A
NZ
LYS
22
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
ALA
2
A
ALA
3
1
Y
1
A
LEU
3
A
LEU
4
1
Y
1
A
THR
4
A
THR
5
1
Y
1
A
PRO
5
A
PRO
6
1
Y
1
A
ASP
6
A
ASP
7
1
Y
1
A
GLN
7
A
GLN
8
1
Y
1
A
MSE
8
A
MSE
9
1
Y
1
A
PRO
9
A
PRO
10
1
Y
1
A
ASP
10
A
ASP
11
1
Y
1
A
PHE
51
A
PHE
52
1
Y
1
A
HIS
52
A
HIS
53
1
Y
1
A
GLY
53
A
GLY
54
1
Y
1
A
GLY
54
A
GLY
55
1
Y
1
A
ASP
55
A
ASP
56
1
Y
1
A
ALA
56
A
ALA
57
1
Y
1
A
GLU
40
B
-170.41
134.64
17.065
0.500
0.250
0.000
0.500
0.000
-0.740
0.973
0.966
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY.
3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE
INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY
OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75
FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.
4. RESIDUES A51-A56 WERE DISORDERED AND NOT VISIBLE IN THE ELECTRON
DENSITY MAPS. THEY WERE NOT BUILT.
5. PHOSPHATE (PO4) ION FROM CRYSTALLIZATION AND GLYCEROL (GOL) FROM
CRYO SOLUTION WERE MODELED.
6. UNEXPLAINED ELECTRON DENSITY NEAR RESIDUE 103 AND 118 WAS
NOT MODELED.
0.164
0.144
0.145
1.700
26.803
1538
30438
5.100
99.960
2.334
0.038
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
SAD
0.062
0.063
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.700
26.803
138
1336
53
0
1145
0.016
0.022
1311
0.002
0.020
902
1.590
1.997
1777
0.932
3.000
2217
6.039
5.000
169
38.518
24.906
53
12.489
15.000
221
9.965
15.000
7
0.085
0.200
197
0.007
0.020
1458
0.002
0.020
247
0.264
0.200
212
0.206
0.200
914
0.173
0.200
624
0.086
0.200
718
0.232
0.200
101
0.193
0.200
26
0.235
0.200
104
0.186
0.200
23
2.658
3.000
875
0.518
3.000
323
3.236
5.000
1321
5.832
8.000
533
8.068
11.000
456
0.269
0.221
1.745
111
2116
2227
20
100.000
19.728
1.70
26.803
3CJE
30482
0.097
0.097
1
5.300
10.400
100.000
0.812
1.70
1.74
0.9
16225
2149
0.812
1
7.60
100.00
0.668
1.74
1.79
1.1
23201
2156
0.668
1
10.80
100.00
0.526
1.79
1.84
1.4
22793
2108
0.526
1
10.80
100.00
0.401
1.84
1.90
1.8
22578
2095
0.401
1
10.80
100.00
0.289
1.90
1.96
2.5
21328
1980
0.289
1
10.80
100.00
0.215
1.96
2.03
3.5
20836
1936
0.215
1
10.80
100.00
0.178
2.03
2.11
4.0
20136
1869
0.178
1
10.80
100.00
0.149
2.11
2.19
4.8
19177
1787
0.149
1
10.70
100.00
0.137
2.19
2.29
4.8
18565
1739
0.137
1
10.70
100.00
0.118
2.29
2.40
5.9
17803
1667
0.118
1
10.70
100.00
0.108
2.40
2.53
6.3
16608
1566
0.108
1
10.60
100.00
0.094
2.53
2.69
7.2
15758
1494
0.094
1
10.50
100.00
0.085
2.69
2.87
7.8
14826
1406
0.085
1
10.50
100.00
0.076
2.87
3.10
8.7
13622
1319
0.076
1
10.30
100.00
0.066
3.10
3.40
9.8
12386
1232
0.066
1
10.10
100.00
0.061
3.40
3.80
10.2
10114
1096
0.061
1
9.20
99.90
0.066
3.80
4.39
9.4
10296
981
0.066
1
10.50
100.00
0.059
4.39
5.38
10.3
9037
843
0.059
1
10.70
100.00
0.066
5.38
7.60
9.5
6914
671
0.066
1
10.30
100.00
0.055
7.60
26.803
10.8
3672
388
0.055
1
9.50
98.00
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
ADSC
Quantum
data reduction
MOSFLM
phasing
SHELXD
phasing
autoSHARP
Crystal structure of an osmc-like hydroperoxide resistance protein (jann_2040) from jannaschia sp. ccs1 at 1.70 A resolution
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
AUTHORS STATE THAT THE CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.
A
PRO
60
A
PRO
61
HELX_P
A
ALA
81
A
ALA
82
1
1
22
A
PRO
126
A
PRO
127
HELX_P
A
CYS
141
A
CYS
142
1
2
16
A
CYS
141
A
CYS
142
HELX_P
A
GLY
148
A
GLY
149
1
3
8
covale
1.332
both
A
LYS
25
A
C
LYS
26
1_555
A
MSE
26
A
N
MSE
27
1_555
covale
1.331
both
A
MSE
26
A
C
MSE
27
1_555
A
ARG
27
A
N
ARG
28
1_555
covale
1.331
both
A
A
ALA
33
A
C
ALA
34
1_555
A
MSE
34
A
N
MSE
35
1_555
covale
1.327
both
B
A
ALA
33
A
C
ALA
34
1_555
A
MSE
34
A
N
MSE
35
1_555
covale
1.330
both
A
A
MSE
34
A
C
MSE
35
1_555
A
VAL
35
A
N
VAL
36
1_555
covale
1.332
both
B
A
MSE
34
A
C
MSE
35
1_555
A
VAL
35
A
N
VAL
36
1_555
covale
1.336
both
A
VAL
73
A
C
VAL
74
1_555
A
MSE
74
A
N
MSE
75
1_555
covale
1.332
both
A
MSE
74
A
C
MSE
75
1_555
A
THR
75
A
N
THR
76
1_555
OXIDOREDUCTASE
Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, oxidoreductase
A
LYS
36
A
LYS
37
1
A
PRO
37
A
PRO
38
5.43
Q28QQ5_JANSC
UNP
1
1
Q28QQ5
MALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPPPLALFIAGLTGCVMTQIRAF
AKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVG
DTFIDA
1
166
3CJE
1
166
Q28QQ5
A
1
2
167
1
expression tag
GLY
0
3CJE
A
Q28QQ5
UNP
1
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
40
A
GLU
41
A
THR
46
A
THR
47
A
ARG
27
A
ARG
28
A
LYS
36
A
LYS
37
A
ALA
12
A
ALA
13
A
VAL
23
A
VAL
24
A
ASP
92
A
ASP
93
A
ALA
104
A
ALA
105
A
VAL
107
A
VAL
108
A
ILE
120
A
ILE
121
A
ARG
156
A
ARG
157
A
VAL
159
A
VAL
160
A
THR
162
A
THR
163
A
ASP
165
A
ASP
166
BINDING SITE FOR RESIDUE PO4 A 167
A
PO4
167
Software
6
BINDING SITE FOR RESIDUE GOL A 168
A
GOL
168
Software
6
BINDING SITE FOR RESIDUE GOL A 169
A
GOL
169
Software
6
BINDING SITE FOR RESIDUE GOL A 170
A
GOL
170
Software
5
BINDING SITE FOR RESIDUE GOL A 171
A
GOL
171
Software
6
BINDING SITE FOR RESIDUE GOL A 172
A
GOL
172
Software
9
BINDING SITE FOR RESIDUE GOL A 173
A
GOL
173
Software
9
BINDING SITE FOR RESIDUE GOL A 174
A
GOL
174
Software
4
BINDING SITE FOR RESIDUE GOL A 175
A
GOL
175
Software
7
A
GLY
24
A
GLY
25
6
1_555
A
LYS
25
A
LYS
26
6
1_555
A
ARG
27
A
ARG
28
6
1_555
A
ASP
47
A
ASP
48
6
1_555
A
HOH
264
K
HOH
6
6_655
A
HOH
283
K
HOH
6
1_555
A
LYS
82
A
LYS
83
6
1_555
A
ARG
83
A
ARG
84
6
1_555
A
HOH
260
K
HOH
6
1_555
A
HOH
303
K
HOH
6
3_565
A
HOH
304
K
HOH
6
1_555
A
HOH
308
K
HOH
6
1_555
A
ALA
22
A
ALA
23
6
1_555
A
ARG
78
A
ARG
79
6
1_555
A
ASP
90
A
ASP
91
6
1_555
A
LEU
91
A
LEU
92
6
1_555
A
HOH
197
K
HOH
6
1_555
A
HOH
242
K
HOH
6
1_555
A
LYS
25
A
LYS
26
5
1_555
A
ARG
78
A
ARG
79
5
1_555
A
GLY
160
A
GLY
161
5
6_655
A
ASP
161
A
ASP
162
5
6_655
A
HOH
242
K
HOH
5
1_555
A
GLU
13
A
GLU
14
6
4_455
A
PRO
37
A
PRO
38
6
4_455
A
TRP
101
A
TRP
102
6
4_455
A
HOH
228
K
HOH
6
1_555
A
HOH
233
K
HOH
6
1_555
A
HOH
271
K
HOH
6
4_455
A
ALA
79
A
ALA
80
9
2_664
A
ARG
83
A
ARG
84
9
2_664
A
SER
123
A
SER
124
9
1_555
A
PRO
124
A
PRO
125
9
1_555
A
ASP
125
A
ASP
126
9
1_555
A
GLN
130
A
GLN
131
9
1_555
A
HOH
183
K
HOH
9
1_555
A
HOH
189
K
HOH
9
1_555
A
HOH
308
K
HOH
9
2_664
A
ALA
12
A
ALA
13
9
1_555
A
LYS
85
A
LYS
86
9
4_565
A
THR
87
A
THR
88
9
4_565
A
TRP
101
A
TRP
102
9
1_555
A
ALA
102
A
ALA
103
9
1_555
A
LYS
103
A
LYS
104
9
1_555
A
ASP
125
A
ASP
126
9
4_565
A
HOH
253
K
HOH
9
1_555
A
HOH
293
K
HOH
9
4_565
A
LYS
82
A
LYS
83
4
1_555
A
THR
87
A
THR
88
4
1_555
A
ASP
161
A
ASP
162
4
6_655
A
HOH
293
K
HOH
4
1_555
A
ARG
83
A
ARG
84
7
2_664
A
LYS
103
A
LYS
104
7
4_455
A
GLY
105
A
GLY
106
7
4_455
A
HIS
122
A
HIS
123
7
1_555
A
PRO
124
A
PRO
125
7
1_555
A
HOH
290
K
HOH
7
1_555
A
HOH
301
K
HOH
7
1_555
154
P 32 2 1