0.019224 0.000000 0.000000 0.000000 0.017367 0.000000 0.000000 0.000000 0.016296 0.000000 0.000000 0.000000 Boettcher, J. Blum, A. Heine, A. Diederich, W.E. Klebe, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 52.018 57.581 61.365 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C28 H37 N5 O6 S2 603.753 (3S,4S),-3,4-Bis-[(4-carbamoyl-benzensulfonyl)-(3-methyl-but-2-enyl)-amino]-pyrrolidine non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N Y 393 N C Y 394 N C N 395 N C N 396 N C Y 397 N C N 398 S C Y 399 N C Y 400 N C Y 401 N C N 402 N S N 403 N O N 404 N N N 405 N C N 406 N C N 407 N C N 408 N C N 409 N C N 410 N N N 411 N O N 412 N O N 413 N N Y 414 N C N 415 N O Y 416 N C Y 417 N C N 418 N C N 419 N S N 420 N C N 421 N C N 422 N O Y 423 N C Y 424 N C N 425 S C N 426 N C Y 427 N C N 428 N N N 429 N C N 430 N C N 431 N C N 432 N O N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing N 379 N sing Y 380 N sing N 381 N doub N 382 N sing Y 383 N doub N 384 N sing N 385 N sing N 386 N sing Y 387 N sing N 388 N sing Y 389 N doub N 390 N doub N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing Y 400 N doub Y 401 N sing N 402 N doub Y 403 N sing Y 404 N doub N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing Y 412 N doub Y 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 410 745 755 10.1016/j.jmb.2011.04.052 21762812 Two Solutions for the Same Problem: Multiple Binding Modes of Pyrrolidine-Based HIV-1 Protease Inhibitors 2011 10.2210/pdb3ckt/pdb pdb_00003ckt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 196 1 double crystal monochromator with two sets of mirrors CCD 2007-06-29 MAR CCD 165 mm double crystal SINGLE WAVELENGTH M x-ray 1 0.91841 1.0 14.2 BESSY 0.91841 SYNCHROTRON BESSY BEAMLINE 14.2 10803.756 Protease 3.4.23.16 2 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 603.753 (3S,4S),-3,4-Bis-[(4-carbamoyl-benzensulfonyl)-(3-methyl-but-2-enyl)-amino]-pyrrolidine 1 syn non-polymer 18.015 water 124 nat water Retropepsin no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-1 sample gag-pol 11676 Human immunodeficiency virus 1 562 Escherichia coli BL21(D3)pLysS plasmid peT11a 1 2.126596 42.16 VAPOR DIFFUSION, SITTING DROP 6.5 3.5M NaCl, 0.1M BisTris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Database references Structure summary Data collection Database references Derived calculations Refinement description 1 0 2009-03-24 1 1 2011-07-13 1 2 2011-08-10 1 3 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (hexagonal space group) RCSB Y PDBJ 2008-03-17 REL REL CL CHLORIDE ION YDP (3S,4S),-3,4-Bis-[(4-carbamoyl-benzensulfonyl)-(3-methyl-but-2-enyl)-amino]-pyrrolidine HOH water 2PQZ PDB experimental model CL 2602 2 CL CL 2602 A LIG 2501 3 YDP YDP 2501 A CL 2601 2 CL CL 2601 B HOH 3001 4 HOH HOH 3001 A HOH 3004 4 HOH HOH 3004 A HOH 3005 4 HOH HOH 3005 A HOH 3007 4 HOH HOH 3007 A HOH 3008 4 HOH HOH 3008 A HOH 3010 4 HOH HOH 3010 A HOH 3012 4 HOH HOH 3012 A HOH 3013 4 HOH HOH 3013 A HOH 3014 4 HOH HOH 3014 A HOH 3015 4 HOH HOH 3015 A HOH 3018 4 HOH HOH 3018 A HOH 3019 4 HOH HOH 3019 A HOH 3020 4 HOH HOH 3020 A HOH 3023 4 HOH HOH 3023 A HOH 3025 4 HOH HOH 3025 A HOH 3032 4 HOH HOH 3032 A HOH 3039 4 HOH HOH 3039 A HOH 3041 4 HOH HOH 3041 A HOH 3042 4 HOH HOH 3042 A HOH 3045 4 HOH HOH 3045 A HOH 3046 4 HOH HOH 3046 A HOH 3048 4 HOH HOH 3048 A HOH 3050 4 HOH HOH 3050 A HOH 3052 4 HOH HOH 3052 A HOH 3056 4 HOH HOH 3056 A HOH 3058 4 HOH HOH 3058 A HOH 3060 4 HOH HOH 3060 A HOH 3062 4 HOH HOH 3062 A HOH 3063 4 HOH HOH 3063 A HOH 3064 4 HOH HOH 3064 A HOH 3065 4 HOH HOH 3065 A HOH 3070 4 HOH HOH 3070 A HOH 3075 4 HOH HOH 3075 A HOH 3076 4 HOH HOH 3076 A HOH 3077 4 HOH HOH 3077 A HOH 3078 4 HOH HOH 3078 A HOH 3080 4 HOH HOH 3080 A HOH 3082 4 HOH HOH 3082 A HOH 3089 4 HOH HOH 3089 A HOH 3091 4 HOH HOH 3091 A HOH 3093 4 HOH HOH 3093 A HOH 3094 4 HOH HOH 3094 A HOH 3096 4 HOH HOH 3096 A HOH 3097 4 HOH HOH 3097 A HOH 3099 4 HOH HOH 3099 A HOH 3102 4 HOH HOH 3102 A HOH 3103 4 HOH HOH 3103 A HOH 3108 4 HOH HOH 3108 A HOH 3109 4 HOH HOH 3109 A HOH 3111 4 HOH HOH 3111 A HOH 3112 4 HOH HOH 3112 A HOH 3113 4 HOH HOH 3113 A HOH 3114 4 HOH HOH 3114 A HOH 3116 4 HOH HOH 3116 A HOH 3117 4 HOH HOH 3117 A HOH 3118 4 HOH HOH 3118 A HOH 3119 4 HOH HOH 3119 A HOH 3120 4 HOH HOH 3120 A HOH 3002 4 HOH HOH 3002 B HOH 3003 4 HOH HOH 3003 B HOH 3006 4 HOH HOH 3006 B HOH 3009 4 HOH HOH 3009 B HOH 3011 4 HOH HOH 3011 B HOH 3016 4 HOH HOH 3016 B HOH 3017 4 HOH HOH 3017 B HOH 3021 4 HOH HOH 3021 B HOH 3022 4 HOH HOH 3022 B HOH 3024 4 HOH HOH 3024 B HOH 3026 4 HOH HOH 3026 B HOH 3027 4 HOH HOH 3027 B HOH 3028 4 HOH HOH 3028 B HOH 3029 4 HOH HOH 3029 B HOH 3030 4 HOH HOH 3030 B HOH 3031 4 HOH HOH 3031 B HOH 3033 4 HOH HOH 3033 B HOH 3034 4 HOH HOH 3034 B HOH 3035 4 HOH HOH 3035 B HOH 3036 4 HOH HOH 3036 B HOH 3037 4 HOH HOH 3037 B HOH 3038 4 HOH HOH 3038 B HOH 3040 4 HOH HOH 3040 B HOH 3043 4 HOH HOH 3043 B HOH 3044 4 HOH HOH 3044 B HOH 3047 4 HOH HOH 3047 B HOH 3049 4 HOH HOH 3049 B HOH 3051 4 HOH HOH 3051 B HOH 3053 4 HOH HOH 3053 B HOH 3054 4 HOH HOH 3054 B HOH 3055 4 HOH HOH 3055 B HOH 3057 4 HOH HOH 3057 B HOH 3059 4 HOH HOH 3059 B HOH 3061 4 HOH HOH 3061 B HOH 3066 4 HOH HOH 3066 B HOH 3067 4 HOH HOH 3067 B HOH 3068 4 HOH HOH 3068 B HOH 3069 4 HOH HOH 3069 B HOH 3071 4 HOH HOH 3071 B HOH 3072 4 HOH HOH 3072 B HOH 3073 4 HOH HOH 3073 B HOH 3074 4 HOH HOH 3074 B HOH 3079 4 HOH HOH 3079 B HOH 3081 4 HOH HOH 3081 B HOH 3083 4 HOH HOH 3083 B HOH 3084 4 HOH HOH 3084 B HOH 3085 4 HOH HOH 3085 B HOH 3086 4 HOH HOH 3086 B HOH 3087 4 HOH HOH 3087 B HOH 3088 4 HOH HOH 3088 B HOH 3090 4 HOH HOH 3090 B HOH 3092 4 HOH HOH 3092 B HOH 3095 4 HOH HOH 3095 B HOH 3098 4 HOH HOH 3098 B HOH 3100 4 HOH HOH 3100 B HOH 3101 4 HOH HOH 3101 B HOH 3104 4 HOH HOH 3104 B HOH 3105 4 HOH HOH 3105 B HOH 3106 4 HOH HOH 3106 B HOH 3107 4 HOH HOH 3107 B HOH 3110 4 HOH HOH 3110 B HOH 3115 4 HOH HOH 3115 B HOH 3121 4 HOH HOH 3121 B HOH 3122 4 HOH HOH 3122 B HOH 3123 4 HOH HOH 3123 B HOH 3124 4 HOH HOH 3124 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A ALA 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B ALA 7 n 7 GLN 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ALA 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B ALA 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B ALA 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B ALA 63 n 63 LEU 63 B ILE 64 n 64 ILE 64 B ALA 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B ALA 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B 0.1828 0.2018 17918 author_and_software_defined_assembly PISA 2 dimeric 4050 -43.7 9300 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 64 A N ILE 64 A O ALA 71 A O ALA 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ILE 66 B N ILE 66 B O HIS 69 B O HIS 69 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O ILE 84 B O ILE 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O LYS 20 B O LYS 20 B N ILE 13 B N ILE 13 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 A CG LYS 14 A CG LYS 14 1 Y 1 A CD LYS 14 A CD LYS 14 1 Y 1 A CE LYS 14 A CE LYS 14 1 Y 1 A NZ LYS 14 A NZ LYS 14 1 Y 1 B CG GLN 7 B CG GLN 7 1 Y 1 B CD GLN 7 B CD GLN 7 1 Y 1 B OE1 GLN 7 B OE1 GLN 7 1 Y 1 B NE2 GLN 7 B NE2 GLN 7 1 Y 1 B CG ARG 41 B CG ARG 41 1 Y 1 B CD ARG 41 B CD ARG 41 1 Y 1 B NE ARG 41 B NE ARG 41 1 Y 1 B CZ ARG 41 B CZ ARG 41 1 Y 1 B NH1 ARG 41 B NH1 ARG 41 1 Y 1 B NH2 ARG 41 B NH2 ARG 41 1 Y 1 B CG LYS 43 B CG LYS 43 1 Y 1 B CD LYS 43 B CD LYS 43 1 Y 1 B CE LYS 43 B CE LYS 43 1 Y 1 B NZ LYS 43 B NZ LYS 43 1 Y 1 B CG LYS 55 B CG LYS 55 1 Y 1 B CD LYS 55 B CD LYS 55 1 Y 1 B CE LYS 55 B CE LYS 55 1 Y 1 B NZ LYS 55 B NZ LYS 55 1 Y 1 B CG LEU 63 B CG LEU 63 1 Y 1 B CD1 LEU 63 B CD1 LEU 63 1 Y 1 B CD2 LEU 63 B CD2 LEU 63 1 Y 1 B CG GLU 65 B CG GLU 65 1 Y 1 B CD GLU 65 B CD GLU 65 1 Y 1 B OE1 GLU 65 B OE1 GLU 65 1 Y 1 B OE2 GLU 65 B OE2 GLU 65 1 Y 1 B CG LYS 70 B CG LYS 70 1 Y 1 B CD LYS 70 B CD LYS 70 1 Y 1 B CE LYS 70 B CE LYS 70 1 Y 1 B NZ LYS 70 B NZ LYS 70 1 Y 1 4.11 0.50 120.30 124.41 A A A NE CZ NH1 ARG ARG ARG 87 87 87 N 1 14.95 1.40 123.60 138.55 B B B CD NE CZ ARG ARG ARG 57 57 57 N 1 5.18 0.50 120.30 125.48 B B B NE CZ NH1 ARG ARG ARG 87 87 87 N 1 A PRO 79 -75.01 34.34 ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 0.239 0.183 0.2018 0.185 1.65 10.00 6631 1118 21271 21271 6285 93.9 RANDOM 1 FREE R 4 2 MOLECULAR REPLACEMENT 2PQZ ENGH & HUBER 1 1554.00 1650.00 1.65 10.00 124 1650 43 0 1483 0.007 0.024 0.000 0.0265 0.040 0.042 0.017 0.000 0.063 0.000 15.9 1.65 25 3CKT 22526 0 0 0.052 0.052 1 26.1 4.4 98.8 0.350 1.65 1.68 2.7 993 0.350 1 2.5 89.4 model building SHELX refinement SHELXL-97 data collection MAR345dtb data reduction HKL-2000 data scaling HKL-2000 phasing PHASER HIV-1 protease in complex with a dimethylallyl decorated pyrrolidine based inhibitor (orthorombic space group) 1 N N 1 N N 2 N N 3 N N 2 N N 4 N N 4 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 86 B GLY 86 HELX_P B GLY 94 B GLY 94 1 3 9 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE-HYDROLASE INHIBITOR complex POL_HV1BR UNP 1 501 P03367 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 501 599 3CKT 1 99 P03367 A 1 1 99 501 599 3CKT 1 99 P03367 B 1 1 99 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A THR 31 A THR 31 A LEU 33 A LEU 33 A ASN 83 A ASN 83 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE CL B 2601 B CL 2601 Software 2 BINDING SITE FOR RESIDUE CL A 2602 A CL 2602 Software 3 BINDING SITE FOR RESIDUE YDP A 2501 A YDP 2501 Software 19 B THR 74 B THR 74 2 1_555 B ASN 88 B ASN 88 2 1_555 A GLY 73 A GLY 73 3 1_555 A THR 74 A THR 74 3 1_555 A ASN 88 A ASN 88 3 1_555 A LEU 23 A LEU 23 19 1_555 A ASP 25 A ASP 25 19 1_555 A GLY 27 A GLY 27 19 1_555 A ALA 28 A ALA 28 19 1_555 A ASP 29 A ASP 29 19 1_555 A ASP 30 A ASP 30 19 1_555 A GLY 48 A GLY 48 19 1_555 A GLY 49 A GLY 49 19 1_555 A ILE 50 A ILE 50 19 1_555 A ILE 84 A ILE 84 19 1_555 B LEU 23 B LEU 23 19 1_555 B ASP 25 B ASP 25 19 1_555 B GLY 27 B GLY 27 19 1_555 B ALA 28 B ALA 28 19 1_555 B ASP 29 B ASP 29 19 1_555 B ASP 30 B ASP 30 19 1_555 B GLY 48 B GLY 48 19 1_555 B ILE 50 B ILE 50 19 1_555 B ILE 84 B ILE 84 19 1_555 19 P 21 21 21