0.013494
0.000000
0.000000
0.000000
0.013494
0.000000
0.000000
0.000000
0.006214
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
74.108
74.108
160.923
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of predicted hydrolase of haloacid dehalogenase-like superfamily (NP_295428.1) from Deinococcus radiodurans at 1.66 A resolution
10.2210/pdb3cnh/pdb
pdb_00003cnh
100
1
Flat collimating mirror, toroid focusing mirror
CCD
2008-02-21
MARMOSAIC 325 mm CCD
Double crystal
MAD
M
x-ray
1
0.91837
1.0
0.97922
1.0
0.97908
1.0
BL9-2
SSRL
0.91837, 0.97922, 0.97908
SYNCHROTRON
SSRL BEAMLINE BL9-2
23171.053
Hydrolase family protein
2
man
polymer
22.990
SODIUM ION
2
syn
non-polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
323
nat
water
no
yes
G(MSE)TIKALFWDIGGVLLTNGWDREQRADVAQRFGLDTDDFTERHRLAAPELELGR(MSE)TLAEYLEQVVFYQPRDF
TPEDFRAV(MSE)EEQSQPRPEVLALARDLGQRYR(MSE)YSLNNEGRDLNEYRIRTFGLGEFLLAFFTSSALGV(MSE)
KPNPA(MSE)YRLGLTLAQVRPEEAV(MSE)VDDRLQNVQAARAVG(MSE)HAVQCVDAAQLREELAALGVR
GMTIKALFWDIGGVLLTNGWDREQRADVAQRFGLDTDDFTERHRLAAPELELGRMTLAEYLEQVVFYQPRDFTPEDFRAV
MEEQSQPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEE
AVMVDDRLQNVQAARAVGMHAVQCVDAAQLREELAALGVR
A,B
379311
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Deinococcus
Deinococcus radiodurans
R1 / DSM 20539 / IFO 15346 / LMG 4051 / NCIB 9279
Escherichia
sample
13939
NP_295428.1, DR_1705
243230
Deinococcus radiodurans R1
562
Escherichia coli
HK100
Plasmid
SpeedET
1
2.38
48.40
VAPOR DIFFUSION, SITTING DROP
4.2
NANODROP, 0.2M NaCl, 20.0% PEG 8000, 0.1M Phosphate citrate pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
software
struct_conn
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2008-04-08
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-24
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2008-03-25
REL
REL
NA
SODIUM ION
PO4
PHOSPHATE ION
PG4
TETRAETHYLENE GLYCOL
GOL
GLYCEROL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG
MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE
LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
NA
1
2
NA
NA
200
A
PO4
3
3
PO4
PO4
201
A
PG4
5
4
PG4
PG4
202
A
NA
2
2
NA
NA
200
B
PO4
4
3
PO4
PO4
201
B
GOL
6
5
GOL
GOL
202
B
HOH
7
6
HOH
HOH
203
A
HOH
9
6
HOH
HOH
204
A
HOH
10
6
HOH
HOH
205
A
HOH
12
6
HOH
HOH
206
A
HOH
13
6
HOH
HOH
207
A
HOH
16
6
HOH
HOH
208
A
HOH
17
6
HOH
HOH
209
A
HOH
18
6
HOH
HOH
210
A
HOH
19
6
HOH
HOH
211
A
HOH
20
6
HOH
HOH
212
A
HOH
21
6
HOH
HOH
213
A
HOH
22
6
HOH
HOH
214
A
HOH
23
6
HOH
HOH
215
A
HOH
24
6
HOH
HOH
216
A
HOH
25
6
HOH
HOH
217
A
HOH
26
6
HOH
HOH
218
A
HOH
27
6
HOH
HOH
219
A
HOH
29
6
HOH
HOH
220
A
HOH
33
6
HOH
HOH
221
A
HOH
35
6
HOH
HOH
222
A
HOH
36
6
HOH
HOH
223
A
HOH
37
6
HOH
HOH
224
A
HOH
38
6
HOH
HOH
225
A
HOH
39
6
HOH
HOH
226
A
HOH
41
6
HOH
HOH
227
A
HOH
42
6
HOH
HOH
228
A
HOH
44
6
HOH
HOH
229
A
HOH
45
6
HOH
HOH
230
A
HOH
46
6
HOH
HOH
231
A
HOH
47
6
HOH
HOH
232
A
HOH
48
6
HOH
HOH
233
A
HOH
49
6
HOH
HOH
234
A
HOH
50
6
HOH
HOH
235
A
HOH
51
6
HOH
HOH
236
A
HOH
52
6
HOH
HOH
237
A
HOH
53
6
HOH
HOH
238
A
HOH
54
6
HOH
HOH
239
A
HOH
55
6
HOH
HOH
240
A
HOH
56
6
HOH
HOH
241
A
HOH
57
6
HOH
HOH
242
A
HOH
58
6
HOH
HOH
243
A
HOH
59
6
HOH
HOH
244
A
HOH
61
6
HOH
HOH
245
A
HOH
63
6
HOH
HOH
246
A
HOH
64
6
HOH
HOH
247
A
HOH
65
6
HOH
HOH
248
A
HOH
66
6
HOH
HOH
249
A
HOH
67
6
HOH
HOH
250
A
HOH
69
6
HOH
HOH
251
A
HOH
72
6
HOH
HOH
252
A
HOH
73
6
HOH
HOH
253
A
HOH
74
6
HOH
HOH
254
A
HOH
76
6
HOH
HOH
255
A
HOH
77
6
HOH
HOH
256
A
HOH
78
6
HOH
HOH
257
A
HOH
79
6
HOH
HOH
258
A
HOH
80
6
HOH
HOH
259
A
HOH
83
6
HOH
HOH
260
A
HOH
84
6
HOH
HOH
261
A
HOH
85
6
HOH
HOH
262
A
HOH
88
6
HOH
HOH
263
A
HOH
89
6
HOH
HOH
264
A
HOH
91
6
HOH
HOH
265
A
HOH
92
6
HOH
HOH
266
A
HOH
93
6
HOH
HOH
267
A
HOH
94
6
HOH
HOH
268
A
HOH
95
6
HOH
HOH
269
A
HOH
96
6
HOH
HOH
270
A
HOH
97
6
HOH
HOH
271
A
HOH
98
6
HOH
HOH
272
A
HOH
99
6
HOH
HOH
273
A
HOH
100
6
HOH
HOH
274
A
HOH
104
6
HOH
HOH
275
A
HOH
105
6
HOH
HOH
276
A
HOH
106
6
HOH
HOH
277
A
HOH
108
6
HOH
HOH
278
A
HOH
110
6
HOH
HOH
279
A
HOH
111
6
HOH
HOH
280
A
HOH
112
6
HOH
HOH
281
A
HOH
113
6
HOH
HOH
282
A
HOH
114
6
HOH
HOH
283
A
HOH
115
6
HOH
HOH
284
A
HOH
116
6
HOH
HOH
285
A
HOH
117
6
HOH
HOH
286
A
HOH
118
6
HOH
HOH
287
A
HOH
119
6
HOH
HOH
288
A
HOH
120
6
HOH
HOH
289
A
HOH
121
6
HOH
HOH
290
A
HOH
122
6
HOH
HOH
291
A
HOH
125
6
HOH
HOH
292
A
HOH
127
6
HOH
HOH
293
A
HOH
130
6
HOH
HOH
294
A
HOH
138
6
HOH
HOH
298
A
HOH
143
6
HOH
HOH
301
A
HOH
145
6
HOH
HOH
302
A
HOH
147
6
HOH
HOH
303
A
HOH
148
6
HOH
HOH
304
A
HOH
149
6
HOH
HOH
305
A
HOH
150
6
HOH
HOH
306
A
HOH
152
6
HOH
HOH
307
A
HOH
154
6
HOH
HOH
308
A
HOH
155
6
HOH
HOH
309
A
HOH
157
6
HOH
HOH
310
A
HOH
159
6
HOH
HOH
311
A
HOH
160
6
HOH
HOH
312
A
HOH
162
6
HOH
HOH
313
A
HOH
164
6
HOH
HOH
314
A
HOH
165
6
HOH
HOH
315
A
HOH
166
6
HOH
HOH
316
A
HOH
167
6
HOH
HOH
317
A
HOH
168
6
HOH
HOH
318
A
HOH
169
6
HOH
HOH
319
A
HOH
172
6
HOH
HOH
320
A
HOH
174
6
HOH
HOH
321
A
HOH
175
6
HOH
HOH
322
A
HOH
179
6
HOH
HOH
325
A
HOH
180
6
HOH
HOH
326
A
HOH
181
6
HOH
HOH
327
A
HOH
182
6
HOH
HOH
328
A
HOH
208
6
HOH
HOH
330
A
HOH
210
6
HOH
HOH
331
A
HOH
211
6
HOH
HOH
332
A
HOH
213
6
HOH
HOH
333
A
HOH
214
6
HOH
HOH
334
A
HOH
215
6
HOH
HOH
335
A
HOH
217
6
HOH
HOH
336
A
HOH
221
6
HOH
HOH
337
A
HOH
228
6
HOH
HOH
338
A
HOH
229
6
HOH
HOH
339
A
HOH
230
6
HOH
HOH
340
A
HOH
231
6
HOH
HOH
341
A
HOH
233
6
HOH
HOH
342
A
HOH
235
6
HOH
HOH
343
A
HOH
236
6
HOH
HOH
344
A
HOH
237
6
HOH
HOH
345
A
HOH
238
6
HOH
HOH
346
A
HOH
239
6
HOH
HOH
347
A
HOH
240
6
HOH
HOH
348
A
HOH
245
6
HOH
HOH
349
A
HOH
246
6
HOH
HOH
350
A
HOH
248
6
HOH
HOH
351
A
HOH
253
6
HOH
HOH
352
A
HOH
259
6
HOH
HOH
353
A
HOH
261
6
HOH
HOH
354
A
HOH
263
6
HOH
HOH
355
A
HOH
264
6
HOH
HOH
356
A
HOH
265
6
HOH
HOH
357
A
HOH
266
6
HOH
HOH
358
A
HOH
267
6
HOH
HOH
359
A
HOH
268
6
HOH
HOH
360
A
HOH
269
6
HOH
HOH
361
A
HOH
270
6
HOH
HOH
362
A
HOH
271
6
HOH
HOH
363
A
HOH
272
6
HOH
HOH
364
A
HOH
274
6
HOH
HOH
365
A
HOH
276
6
HOH
HOH
366
A
HOH
278
6
HOH
HOH
367
A
HOH
279
6
HOH
HOH
368
A
HOH
280
6
HOH
HOH
369
A
HOH
281
6
HOH
HOH
370
A
HOH
283
6
HOH
HOH
371
A
HOH
284
6
HOH
HOH
372
A
HOH
285
6
HOH
HOH
373
A
HOH
288
6
HOH
HOH
374
A
HOH
289
6
HOH
HOH
375
A
HOH
292
6
HOH
HOH
376
A
HOH
293
6
HOH
HOH
377
A
HOH
294
6
HOH
HOH
378
A
HOH
309
6
HOH
HOH
379
A
HOH
314
6
HOH
HOH
380
A
HOH
315
6
HOH
HOH
381
A
HOH
320
6
HOH
HOH
382
A
HOH
322
6
HOH
HOH
383
A
HOH
323
6
HOH
HOH
384
A
HOH
326
6
HOH
HOH
385
A
HOH
327
6
HOH
HOH
386
A
HOH
328
6
HOH
HOH
387
A
HOH
134
6
HOH
HOH
295
B
HOH
135
6
HOH
HOH
296
B
HOH
137
6
HOH
HOH
297
B
HOH
139
6
HOH
HOH
298
B
HOH
140
6
HOH
HOH
299
B
HOH
176
6
HOH
HOH
300
B
HOH
178
6
HOH
HOH
301
B
HOH
194
6
HOH
HOH
302
B
HOH
8
6
HOH
HOH
303
B
HOH
11
6
HOH
HOH
304
B
HOH
14
6
HOH
HOH
305
B
HOH
15
6
HOH
HOH
306
B
HOH
28
6
HOH
HOH
307
B
HOH
30
6
HOH
HOH
308
B
HOH
31
6
HOH
HOH
309
B
HOH
32
6
HOH
HOH
310
B
HOH
34
6
HOH
HOH
311
B
HOH
40
6
HOH
HOH
312
B
HOH
43
6
HOH
HOH
313
B
HOH
60
6
HOH
HOH
314
B
HOH
62
6
HOH
HOH
315
B
HOH
68
6
HOH
HOH
316
B
HOH
70
6
HOH
HOH
317
B
HOH
71
6
HOH
HOH
318
B
HOH
75
6
HOH
HOH
319
B
HOH
81
6
HOH
HOH
320
B
HOH
82
6
HOH
HOH
321
B
HOH
86
6
HOH
HOH
322
B
HOH
87
6
HOH
HOH
323
B
HOH
90
6
HOH
HOH
324
B
HOH
101
6
HOH
HOH
325
B
HOH
102
6
HOH
HOH
326
B
HOH
103
6
HOH
HOH
327
B
HOH
107
6
HOH
HOH
328
B
HOH
109
6
HOH
HOH
329
B
HOH
123
6
HOH
HOH
330
B
HOH
124
6
HOH
HOH
331
B
HOH
126
6
HOH
HOH
332
B
HOH
128
6
HOH
HOH
333
B
HOH
129
6
HOH
HOH
334
B
HOH
131
6
HOH
HOH
335
B
HOH
132
6
HOH
HOH
336
B
HOH
133
6
HOH
HOH
337
B
HOH
136
6
HOH
HOH
338
B
HOH
141
6
HOH
HOH
339
B
HOH
142
6
HOH
HOH
340
B
HOH
144
6
HOH
HOH
341
B
HOH
146
6
HOH
HOH
342
B
HOH
151
6
HOH
HOH
343
B
HOH
153
6
HOH
HOH
344
B
HOH
156
6
HOH
HOH
345
B
HOH
158
6
HOH
HOH
346
B
HOH
161
6
HOH
HOH
347
B
HOH
163
6
HOH
HOH
348
B
HOH
170
6
HOH
HOH
349
B
HOH
171
6
HOH
HOH
350
B
HOH
173
6
HOH
HOH
351
B
HOH
177
6
HOH
HOH
352
B
HOH
183
6
HOH
HOH
353
B
HOH
184
6
HOH
HOH
354
B
HOH
185
6
HOH
HOH
355
B
HOH
186
6
HOH
HOH
356
B
HOH
187
6
HOH
HOH
357
B
HOH
188
6
HOH
HOH
358
B
HOH
189
6
HOH
HOH
359
B
HOH
190
6
HOH
HOH
360
B
HOH
191
6
HOH
HOH
361
B
HOH
192
6
HOH
HOH
362
B
HOH
193
6
HOH
HOH
363
B
HOH
195
6
HOH
HOH
364
B
HOH
196
6
HOH
HOH
365
B
HOH
197
6
HOH
HOH
366
B
HOH
198
6
HOH
HOH
367
B
HOH
199
6
HOH
HOH
368
B
HOH
200
6
HOH
HOH
369
B
HOH
201
6
HOH
HOH
370
B
HOH
202
6
HOH
HOH
371
B
HOH
203
6
HOH
HOH
372
B
HOH
204
6
HOH
HOH
373
B
HOH
205
6
HOH
HOH
374
B
HOH
206
6
HOH
HOH
375
B
HOH
207
6
HOH
HOH
376
B
HOH
209
6
HOH
HOH
377
B
HOH
212
6
HOH
HOH
378
B
HOH
216
6
HOH
HOH
379
B
HOH
218
6
HOH
HOH
380
B
HOH
219
6
HOH
HOH
381
B
HOH
220
6
HOH
HOH
382
B
HOH
222
6
HOH
HOH
383
B
HOH
223
6
HOH
HOH
384
B
HOH
224
6
HOH
HOH
385
B
HOH
225
6
HOH
HOH
386
B
HOH
226
6
HOH
HOH
387
B
HOH
227
6
HOH
HOH
388
B
HOH
232
6
HOH
HOH
389
B
HOH
234
6
HOH
HOH
390
B
HOH
241
6
HOH
HOH
391
B
HOH
242
6
HOH
HOH
392
B
HOH
243
6
HOH
HOH
393
B
HOH
244
6
HOH
HOH
394
B
HOH
247
6
HOH
HOH
395
B
HOH
249
6
HOH
HOH
396
B
HOH
250
6
HOH
HOH
397
B
HOH
251
6
HOH
HOH
398
B
HOH
252
6
HOH
HOH
399
B
HOH
254
6
HOH
HOH
400
B
HOH
255
6
HOH
HOH
401
B
HOH
256
6
HOH
HOH
402
B
HOH
257
6
HOH
HOH
403
B
HOH
258
6
HOH
HOH
404
B
HOH
260
6
HOH
HOH
405
B
HOH
262
6
HOH
HOH
406
B
HOH
273
6
HOH
HOH
407
B
HOH
275
6
HOH
HOH
408
B
HOH
277
6
HOH
HOH
409
B
HOH
282
6
HOH
HOH
410
B
HOH
286
6
HOH
HOH
411
B
HOH
287
6
HOH
HOH
412
B
HOH
290
6
HOH
HOH
413
B
HOH
291
6
HOH
HOH
414
B
HOH
295
6
HOH
HOH
415
B
HOH
296
6
HOH
HOH
416
B
HOH
297
6
HOH
HOH
417
B
HOH
298
6
HOH
HOH
418
B
HOH
299
6
HOH
HOH
419
B
HOH
300
6
HOH
HOH
420
B
HOH
301
6
HOH
HOH
421
B
HOH
302
6
HOH
HOH
422
B
HOH
303
6
HOH
HOH
423
B
HOH
304
6
HOH
HOH
424
B
HOH
305
6
HOH
HOH
425
B
HOH
306
6
HOH
HOH
426
B
HOH
307
6
HOH
HOH
427
B
HOH
308
6
HOH
HOH
428
B
HOH
310
6
HOH
HOH
429
B
HOH
311
6
HOH
HOH
430
B
HOH
312
6
HOH
HOH
431
B
HOH
313
6
HOH
HOH
432
B
HOH
316
6
HOH
HOH
433
B
HOH
317
6
HOH
HOH
434
B
HOH
318
6
HOH
HOH
435
B
HOH
319
6
HOH
HOH
436
B
HOH
321
6
HOH
HOH
437
B
HOH
324
6
HOH
HOH
438
B
HOH
325
6
HOH
HOH
439
B
HOH
329
6
HOH
HOH
440
B
GLY
0
n
1
GLY
0
A
MSE
1
n
2
MSE
1
A
THR
2
n
3
THR
2
A
ILE
3
n
4
ILE
3
A
LYS
4
n
5
LYS
4
A
ALA
5
n
6
ALA
5
A
LEU
6
n
7
LEU
6
A
PHE
7
n
8
PHE
7
A
TRP
8
n
9
TRP
8
A
ASP
9
n
10
ASP
9
A
ILE
10
n
11
ILE
10
A
GLY
11
n
12
GLY
11
A
GLY
12
n
13
GLY
12
A
VAL
13
n
14
VAL
13
A
LEU
14
n
15
LEU
14
A
LEU
15
n
16
LEU
15
A
THR
16
n
17
THR
16
A
ASN
17
n
18
ASN
17
A
GLY
18
n
19
GLY
18
A
TRP
19
n
20
TRP
19
A
ASP
20
n
21
ASP
20
A
ARG
21
n
22
ARG
21
A
GLU
22
n
23
GLU
22
A
GLN
23
n
24
GLN
23
A
ARG
24
n
25
ARG
24
A
ALA
25
n
26
ALA
25
A
ASP
26
n
27
ASP
26
A
VAL
27
n
28
VAL
27
A
ALA
28
n
29
ALA
28
A
GLN
29
n
30
GLN
29
A
ARG
30
n
31
ARG
30
A
PHE
31
n
32
PHE
31
A
GLY
32
n
33
GLY
32
A
LEU
33
n
34
LEU
33
A
ASP
34
n
35
ASP
34
A
THR
35
n
36
THR
35
A
ASP
36
n
37
ASP
36
A
ASP
37
n
38
ASP
37
A
PHE
38
n
39
PHE
38
A
THR
39
n
40
THR
39
A
GLU
40
n
41
GLU
40
A
ARG
41
n
42
ARG
41
A
HIS
42
n
43
HIS
42
A
ARG
43
n
44
ARG
43
A
LEU
44
n
45
LEU
44
A
ALA
45
n
46
ALA
45
A
ALA
46
n
47
ALA
46
A
PRO
47
n
48
PRO
47
A
GLU
48
n
49
GLU
48
A
LEU
49
n
50
LEU
49
A
GLU
50
n
51
GLU
50
A
LEU
51
n
52
LEU
51
A
GLY
52
n
53
GLY
52
A
ARG
53
n
54
ARG
53
A
MSE
54
n
55
MSE
54
A
THR
55
n
56
THR
55
A
LEU
56
n
57
LEU
56
A
ALA
57
n
58
ALA
57
A
GLU
58
n
59
GLU
58
A
TYR
59
n
60
TYR
59
A
LEU
60
n
61
LEU
60
A
GLU
61
n
62
GLU
61
A
GLN
62
n
63
GLN
62
A
VAL
63
n
64
VAL
63
A
VAL
64
n
65
VAL
64
A
PHE
65
n
66
PHE
65
A
TYR
66
n
67
TYR
66
A
GLN
67
n
68
GLN
67
A
PRO
68
n
69
PRO
68
A
ARG
69
n
70
ARG
69
A
ASP
70
n
71
ASP
70
A
PHE
71
n
72
PHE
71
A
THR
72
n
73
THR
72
A
PRO
73
n
74
PRO
73
A
GLU
74
n
75
GLU
74
A
ASP
75
n
76
ASP
75
A
PHE
76
n
77
PHE
76
A
ARG
77
n
78
ARG
77
A
ALA
78
n
79
ALA
78
A
VAL
79
n
80
VAL
79
A
MSE
80
n
81
MSE
80
A
GLU
81
n
82
GLU
81
A
GLU
82
n
83
GLU
82
A
GLN
83
n
84
GLN
83
A
SER
84
n
85
SER
84
A
GLN
85
n
86
GLN
85
A
PRO
86
n
87
PRO
86
A
ARG
87
n
88
ARG
87
A
PRO
88
n
89
PRO
88
A
GLU
89
n
90
GLU
89
A
VAL
90
n
91
VAL
90
A
LEU
91
n
92
LEU
91
A
ALA
92
n
93
ALA
92
A
LEU
93
n
94
LEU
93
A
ALA
94
n
95
ALA
94
A
ARG
95
n
96
ARG
95
A
ASP
96
n
97
ASP
96
A
LEU
97
n
98
LEU
97
A
GLY
98
n
99
GLY
98
A
GLN
99
n
100
GLN
99
A
ARG
100
n
101
ARG
100
A
TYR
101
n
102
TYR
101
A
ARG
102
n
103
ARG
102
A
MSE
103
n
104
MSE
103
A
TYR
104
n
105
TYR
104
A
SER
105
n
106
SER
105
A
LEU
106
n
107
LEU
106
A
ASN
107
n
108
ASN
107
A
ASN
108
n
109
ASN
108
A
GLU
109
n
110
GLU
109
A
GLY
110
n
111
GLY
110
A
ARG
111
n
112
ARG
111
A
ASP
112
n
113
ASP
112
A
LEU
113
n
114
LEU
113
A
ASN
114
n
115
ASN
114
A
GLU
115
n
116
GLU
115
A
TYR
116
n
117
TYR
116
A
ARG
117
n
118
ARG
117
A
ILE
118
n
119
ILE
118
A
ARG
119
n
120
ARG
119
A
THR
120
n
121
THR
120
A
PHE
121
n
122
PHE
121
A
GLY
122
n
123
GLY
122
A
LEU
123
n
124
LEU
123
A
GLY
124
n
125
GLY
124
A
GLU
125
n
126
GLU
125
A
PHE
126
n
127
PHE
126
A
LEU
127
n
128
LEU
127
A
LEU
128
n
129
LEU
128
A
ALA
129
n
130
ALA
129
A
PHE
130
n
131
PHE
130
A
PHE
131
n
132
PHE
131
A
THR
132
n
133
THR
132
A
SER
133
n
134
SER
133
A
SER
134
n
135
SER
134
A
ALA
135
n
136
ALA
135
A
LEU
136
n
137
LEU
136
A
GLY
137
n
138
GLY
137
A
VAL
138
n
139
VAL
138
A
MSE
139
n
140
MSE
139
A
LYS
140
n
141
LYS
140
A
PRO
141
n
142
PRO
141
A
ASN
142
n
143
ASN
142
A
PRO
143
n
144
PRO
143
A
ALA
144
n
145
ALA
144
A
MSE
145
n
146
MSE
145
A
TYR
146
n
147
TYR
146
A
ARG
147
n
148
ARG
147
A
LEU
148
n
149
LEU
148
A
GLY
149
n
150
GLY
149
A
LEU
150
n
151
LEU
150
A
THR
151
n
152
THR
151
A
LEU
152
n
153
LEU
152
A
ALA
153
n
154
ALA
153
A
GLN
154
n
155
GLN
154
A
VAL
155
n
156
VAL
155
A
ARG
156
n
157
ARG
156
A
PRO
157
n
158
PRO
157
A
GLU
158
n
159
GLU
158
A
GLU
159
n
160
GLU
159
A
ALA
160
n
161
ALA
160
A
VAL
161
n
162
VAL
161
A
MSE
162
n
163
MSE
162
A
VAL
163
n
164
VAL
163
A
ASP
164
n
165
ASP
164
A
ASP
165
n
166
ASP
165
A
ARG
166
n
167
ARG
166
A
LEU
167
n
168
LEU
167
A
GLN
168
n
169
GLN
168
A
ASN
169
n
170
ASN
169
A
VAL
170
n
171
VAL
170
A
GLN
171
n
172
GLN
171
A
ALA
172
n
173
ALA
172
A
ALA
173
n
174
ALA
173
A
ARG
174
n
175
ARG
174
A
ALA
175
n
176
ALA
175
A
VAL
176
n
177
VAL
176
A
GLY
177
n
178
GLY
177
A
MSE
178
n
179
MSE
178
A
HIS
179
n
180
HIS
179
A
ALA
180
n
181
ALA
180
A
VAL
181
n
182
VAL
181
A
GLN
182
n
183
GLN
182
A
CYS
183
n
184
CYS
183
A
VAL
184
n
185
VAL
184
A
ASP
185
n
186
ASP
185
A
ALA
186
n
187
ALA
186
A
ALA
187
n
188
ALA
187
A
GLN
188
n
189
GLN
188
A
LEU
189
n
190
LEU
189
A
ARG
190
n
191
ARG
190
A
GLU
191
n
192
GLU
191
A
GLU
192
n
193
GLU
192
A
LEU
193
n
194
LEU
193
A
ALA
194
n
195
ALA
194
A
ALA
195
n
196
ALA
195
A
LEU
196
n
197
LEU
196
A
GLY
197
n
198
GLY
197
A
VAL
198
n
199
VAL
198
A
ARG
199
n
200
ARG
199
A
n
1
0
B
MSE
1
n
2
MSE
1
B
THR
2
n
3
THR
2
B
ILE
3
n
4
ILE
3
B
LYS
4
n
5
LYS
4
B
ALA
5
n
6
ALA
5
B
LEU
6
n
7
LEU
6
B
PHE
7
n
8
PHE
7
B
TRP
8
n
9
TRP
8
B
ASP
9
n
10
ASP
9
B
ILE
10
n
11
ILE
10
B
GLY
11
n
12
GLY
11
B
GLY
12
n
13
GLY
12
B
VAL
13
n
14
VAL
13
B
LEU
14
n
15
LEU
14
B
LEU
15
n
16
LEU
15
B
THR
16
n
17
THR
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
TRP
19
n
20
TRP
19
B
ASP
20
n
21
ASP
20
B
ARG
21
n
22
ARG
21
B
GLU
22
n
23
GLU
22
B
GLN
23
n
24
GLN
23
B
ARG
24
n
25
ARG
24
B
ALA
25
n
26
ALA
25
B
ASP
26
n
27
ASP
26
B
VAL
27
n
28
VAL
27
B
ALA
28
n
29
ALA
28
B
GLN
29
n
30
GLN
29
B
ARG
30
n
31
ARG
30
B
PHE
31
n
32
PHE
31
B
GLY
32
n
33
GLY
32
B
LEU
33
n
34
LEU
33
B
ASP
34
n
35
ASP
34
B
THR
35
n
36
THR
35
B
ASP
36
n
37
ASP
36
B
ASP
37
n
38
ASP
37
B
PHE
38
n
39
PHE
38
B
THR
39
n
40
THR
39
B
GLU
40
n
41
GLU
40
B
ARG
41
n
42
ARG
41
B
HIS
42
n
43
HIS
42
B
ARG
43
n
44
ARG
43
B
LEU
44
n
45
LEU
44
B
ALA
45
n
46
ALA
45
B
ALA
46
n
47
ALA
46
B
PRO
47
n
48
PRO
47
B
GLU
48
n
49
GLU
48
B
LEU
49
n
50
LEU
49
B
GLU
50
n
51
GLU
50
B
LEU
51
n
52
LEU
51
B
GLY
52
n
53
GLY
52
B
ARG
53
n
54
ARG
53
B
MSE
54
n
55
MSE
54
B
THR
55
n
56
THR
55
B
LEU
56
n
57
LEU
56
B
ALA
57
n
58
ALA
57
B
GLU
58
n
59
GLU
58
B
TYR
59
n
60
TYR
59
B
LEU
60
n
61
LEU
60
B
GLU
61
n
62
GLU
61
B
GLN
62
n
63
GLN
62
B
VAL
63
n
64
VAL
63
B
VAL
64
n
65
VAL
64
B
PHE
65
n
66
PHE
65
B
TYR
66
n
67
TYR
66
B
GLN
67
n
68
GLN
67
B
PRO
68
n
69
PRO
68
B
ARG
69
n
70
ARG
69
B
ASP
70
n
71
ASP
70
B
PHE
71
n
72
PHE
71
B
THR
72
n
73
THR
72
B
PRO
73
n
74
PRO
73
B
GLU
74
n
75
GLU
74
B
ASP
75
n
76
ASP
75
B
PHE
76
n
77
PHE
76
B
ARG
77
n
78
ARG
77
B
ALA
78
n
79
ALA
78
B
VAL
79
n
80
VAL
79
B
MSE
80
n
81
MSE
80
B
GLU
81
n
82
GLU
81
B
GLU
82
n
83
GLU
82
B
GLN
83
n
84
GLN
83
B
SER
84
n
85
SER
84
B
GLN
85
n
86
GLN
85
B
PRO
86
n
87
PRO
86
B
ARG
87
n
88
ARG
87
B
PRO
88
n
89
PRO
88
B
GLU
89
n
90
GLU
89
B
VAL
90
n
91
VAL
90
B
LEU
91
n
92
LEU
91
B
ALA
92
n
93
ALA
92
B
LEU
93
n
94
LEU
93
B
ALA
94
n
95
ALA
94
B
ARG
95
n
96
ARG
95
B
ASP
96
n
97
ASP
96
B
LEU
97
n
98
LEU
97
B
GLY
98
n
99
GLY
98
B
GLN
99
n
100
GLN
99
B
ARG
100
n
101
ARG
100
B
TYR
101
n
102
TYR
101
B
ARG
102
n
103
ARG
102
B
MSE
103
n
104
MSE
103
B
TYR
104
n
105
TYR
104
B
SER
105
n
106
SER
105
B
LEU
106
n
107
LEU
106
B
ASN
107
n
108
ASN
107
B
ASN
108
n
109
ASN
108
B
GLU
109
n
110
GLU
109
B
GLY
110
n
111
GLY
110
B
ARG
111
n
112
ARG
111
B
ASP
112
n
113
ASP
112
B
LEU
113
n
114
LEU
113
B
ASN
114
n
115
ASN
114
B
GLU
115
n
116
GLU
115
B
TYR
116
n
117
TYR
116
B
ARG
117
n
118
ARG
117
B
ILE
118
n
119
ILE
118
B
ARG
119
n
120
ARG
119
B
THR
120
n
121
THR
120
B
PHE
121
n
122
PHE
121
B
GLY
122
n
123
GLY
122
B
LEU
123
n
124
LEU
123
B
GLY
124
n
125
GLY
124
B
GLU
125
n
126
GLU
125
B
PHE
126
n
127
PHE
126
B
LEU
127
n
128
LEU
127
B
LEU
128
n
129
LEU
128
B
ALA
129
n
130
ALA
129
B
PHE
130
n
131
PHE
130
B
PHE
131
n
132
PHE
131
B
THR
132
n
133
THR
132
B
SER
133
n
134
SER
133
B
SER
134
n
135
SER
134
B
ALA
135
n
136
ALA
135
B
LEU
136
n
137
LEU
136
B
GLY
137
n
138
GLY
137
B
VAL
138
n
139
VAL
138
B
MSE
139
n
140
MSE
139
B
LYS
140
n
141
LYS
140
B
PRO
141
n
142
PRO
141
B
ASN
142
n
143
ASN
142
B
PRO
143
n
144
PRO
143
B
ALA
144
n
145
ALA
144
B
MSE
145
n
146
MSE
145
B
TYR
146
n
147
TYR
146
B
ARG
147
n
148
ARG
147
B
LEU
148
n
149
LEU
148
B
GLY
149
n
150
GLY
149
B
LEU
150
n
151
LEU
150
B
THR
151
n
152
THR
151
B
LEU
152
n
153
LEU
152
B
ALA
153
n
154
ALA
153
B
GLN
154
n
155
GLN
154
B
VAL
155
n
156
VAL
155
B
ARG
156
n
157
ARG
156
B
PRO
157
n
158
PRO
157
B
GLU
158
n
159
GLU
158
B
GLU
159
n
160
GLU
159
B
ALA
160
n
161
ALA
160
B
VAL
161
n
162
VAL
161
B
MSE
162
n
163
MSE
162
B
VAL
163
n
164
VAL
163
B
ASP
164
n
165
ASP
164
B
ASP
165
n
166
ASP
165
B
ARG
166
n
167
ARG
166
B
LEU
167
n
168
LEU
167
B
GLN
168
n
169
GLN
168
B
ASN
169
n
170
ASN
169
B
VAL
170
n
171
VAL
170
B
GLN
171
n
172
GLN
171
B
ALA
172
n
173
ALA
172
B
ALA
173
n
174
ALA
173
B
ARG
174
n
175
ARG
174
B
ALA
175
n
176
ALA
175
B
VAL
176
n
177
VAL
176
B
GLY
177
n
178
GLY
177
B
MSE
178
n
179
MSE
178
B
HIS
179
n
180
HIS
179
B
ALA
180
n
181
ALA
180
B
VAL
181
n
182
VAL
181
B
GLN
182
n
183
GLN
182
B
CYS
183
n
184
CYS
183
B
VAL
184
n
185
VAL
184
B
ASP
185
n
186
ASP
185
B
ALA
186
n
187
ALA
186
B
ALA
187
n
188
ALA
187
B
GLN
188
n
189
GLN
188
B
LEU
189
n
190
LEU
189
B
ARG
190
n
191
ARG
190
B
GLU
191
n
192
GLU
191
B
GLU
192
n
193
GLU
192
B
LEU
193
n
194
LEU
193
B
ALA
194
n
195
ALA
194
B
ALA
195
n
196
ALA
195
B
LEU
196
n
197
LEU
196
B
GLY
197
n
198
GLY
197
B
VAL
198
n
199
VAL
198
B
ARG
199
n
200
ARG
199
B
0.7413
0.0856
-0.2939
0.7202
-0.1340
1.1873
0.0123
0.0898
0.0237
-0.0374
0.0259
0.0569
-0.0363
-0.1281
-0.0382
-0.1089
-0.0011
-0.0154
-0.0857
-0.0010
-0.2738
refined
67.3670
72.4930
107.3180
X-RAY DIFFRACTION
1.5771
-0.2419
0.1873
0.4151
0.0399
0.7298
0.0090
0.1521
-0.1532
-0.0177
-0.0335
-0.0274
0.0328
0.0720
0.0245
-0.0837
0.0039
0.0054
-0.0897
-0.0204
-0.2280
refined
92.1810
54.8150
106.2950
X-RAY DIFFRACTION
A
0
A
1
A
199
A
200
X-RAY DIFFRACTION
1
B
1
B
2
B
199
B
200
X-RAY DIFFRACTION
2
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
A
ASP
9
A
OD2
ASP
10
1_555
A
NA
200
C
NA
NA
1_555
A
GLY
11
A
O
GLY
12
1_555
85.5
A
ASP
9
A
OD2
ASP
10
1_555
A
NA
200
C
NA
NA
1_555
A
ASP
165
A
OD1
ASP
166
1_555
79.8
A
GLY
11
A
O
GLY
12
1_555
A
NA
200
C
NA
NA
1_555
A
ASP
165
A
OD1
ASP
166
1_555
103.8
A
ASP
9
A
OD2
ASP
10
1_555
A
NA
200
C
NA
NA
1_555
A
PO4
201
D
O2
PO4
1_555
95.8
A
GLY
11
A
O
GLY
12
1_555
A
NA
200
C
NA
NA
1_555
A
PO4
201
D
O2
PO4
1_555
74.6
A
ASP
165
A
OD1
ASP
166
1_555
A
NA
200
C
NA
NA
1_555
A
PO4
201
D
O2
PO4
1_555
175.4
A
ASP
9
A
OD2
ASP
10
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
203
I
O
HOH
1_555
92.0
A
GLY
11
A
O
GLY
12
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
203
I
O
HOH
1_555
167.3
A
ASP
165
A
OD1
ASP
166
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
203
I
O
HOH
1_555
87.9
A
PO4
201
D
O2
PO4
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
203
I
O
HOH
1_555
93.3
A
ASP
9
A
OD2
ASP
10
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
204
I
O
HOH
1_555
162.6
A
GLY
11
A
O
GLY
12
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
204
I
O
HOH
1_555
83.5
A
ASP
165
A
OD1
ASP
166
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
204
I
O
HOH
1_555
89.8
A
PO4
201
D
O2
PO4
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
204
I
O
HOH
1_555
94.2
A
HOH
203
I
O
HOH
1_555
A
NA
200
C
NA
NA
1_555
A
HOH
204
I
O
HOH
1_555
101.7
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
B
GLY
11
B
O
GLY
12
1_555
83.7
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
B
ASP
165
B
OD1
ASP
166
1_555
78.5
B
GLY
11
B
O
GLY
12
1_555
B
NA
200
F
NA
NA
1_555
B
ASP
165
B
OD1
ASP
166
1_555
104.8
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
B
PO4
201
G
O3
PO4
1_555
94.9
B
GLY
11
B
O
GLY
12
1_555
B
NA
200
F
NA
NA
1_555
B
PO4
201
G
O3
PO4
1_555
73.4
B
ASP
165
B
OD1
ASP
166
1_555
B
NA
200
F
NA
NA
1_555
B
PO4
201
G
O3
PO4
1_555
173.3
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
303
J
O
HOH
1_555
87.1
B
GLY
11
B
O
GLY
12
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
303
J
O
HOH
1_555
163.2
B
ASP
165
B
OD1
ASP
166
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
303
J
O
HOH
1_555
86.9
B
PO4
201
G
O3
PO4
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
303
J
O
HOH
1_555
93.5
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
A
J
O
HOH
1_555
157.5
B
GLY
11
B
O
GLY
12
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
A
J
O
HOH
1_555
91.9
B
ASP
165
B
OD1
ASP
166
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
A
J
O
HOH
1_555
81.4
B
PO4
201
G
O3
PO4
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
A
J
O
HOH
1_555
105.0
B
HOH
303
J
O
HOH
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
A
J
O
HOH
1_555
101.8
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
B
J
O
HOH
1_555
162.4
B
GLY
11
B
O
GLY
12
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
B
J
O
HOH
1_555
91.0
B
ASP
165
B
OD1
ASP
166
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
B
J
O
HOH
1_555
119.1
B
PO4
201
G
O3
PO4
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
B
J
O
HOH
1_555
67.5
B
HOH
303
J
O
HOH
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
B
J
O
HOH
1_555
93.6
B
HOH
406
A
J
O
HOH
1_555
B
NA
200
F
NA
NA
1_555
B
HOH
406
B
J
O
HOH
1_555
39.0
A
MSE
1
SELENOMETHIONINE
A
MSE
2
MET
A
MSE
54
SELENOMETHIONINE
A
MSE
55
MET
A
MSE
80
SELENOMETHIONINE
A
MSE
81
MET
A
MSE
103
SELENOMETHIONINE
A
MSE
104
MET
A
MSE
139
SELENOMETHIONINE
A
MSE
140
MET
A
MSE
145
SELENOMETHIONINE
A
MSE
146
MET
A
MSE
162
SELENOMETHIONINE
A
MSE
163
MET
A
MSE
178
SELENOMETHIONINE
A
MSE
179
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
2
MET
B
MSE
54
SELENOMETHIONINE
B
MSE
55
MET
B
MSE
80
SELENOMETHIONINE
B
MSE
81
MET
B
MSE
103
SELENOMETHIONINE
B
MSE
104
MET
B
MSE
139
SELENOMETHIONINE
B
MSE
140
MET
B
MSE
145
SELENOMETHIONINE
B
MSE
146
MET
B
MSE
162
SELENOMETHIONINE
B
MSE
163
MET
B
MSE
178
SELENOMETHIONINE
B
MSE
179
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
131
A
O
PHE
132
A
N
SER
105
A
N
SER
106
A
O
TYR
104
A
O
TYR
105
A
N
TRP
8
A
N
TRP
9
A
N
PHE
7
A
N
PHE
8
A
O
VAL
161
A
O
VAL
162
A
N
MSE
162
A
N
MSE
163
A
O
VAL
181
A
O
VAL
182
B
O
PHE
131
B
O
PHE
132
B
N
SER
105
B
N
SER
106
B
O
TYR
104
B
O
TYR
105
B
N
TRP
8
B
N
TRP
9
B
N
PHE
7
B
N
PHE
8
B
O
VAL
161
B
O
VAL
162
B
N
MSE
162
B
N
MSE
163
B
O
VAL
181
B
O
VAL
182
1
A
CE
LYS
4
A
CE
LYS
5
1
Y
1
A
NZ
LYS
4
A
NZ
LYS
5
1
Y
1
A
CG
ARG
21
A
CG
ARG
22
1
Y
1
A
CD
ARG
21
A
CD
ARG
22
1
Y
1
A
NE
ARG
21
A
NE
ARG
22
1
Y
1
A
CZ
ARG
21
A
CZ
ARG
22
1
Y
1
A
NH1
ARG
21
A
NH1
ARG
22
1
Y
1
A
NH2
ARG
21
A
NH2
ARG
22
1
Y
1
A
CD
GLN
29
A
CD
GLN
30
1
Y
1
A
OE1
GLN
29
A
OE1
GLN
30
1
Y
1
A
NE2
GLN
29
A
NE2
GLN
30
1
Y
1
B
CD
GLU
61
B
CD
GLU
62
1
Y
1
B
OE1
GLU
61
B
OE1
GLU
62
1
Y
1
B
OE2
GLU
61
B
OE2
GLU
62
1
Y
1
B
CZ
ARG
77
B
CZ
ARG
78
1
Y
1
B
NH1
ARG
77
B
NH1
ARG
78
1
Y
1
B
NH2
ARG
77
B
NH2
ARG
78
1
Y
1
B
CD
GLU
125
B
CD
GLU
126
1
Y
1
B
OE1
GLU
125
B
OE1
GLU
126
1
Y
1
B
OE2
GLU
125
B
OE2
GLU
126
1
Y
1
B
CD
GLU
191
B
CD
GLU
192
1
Y
1
B
OE1
GLU
191
B
OE1
GLU
192
1
Y
1
B
OE2
GLU
191
B
OE2
GLU
192
1
Y
1
A
C7
PG4
202
E
C7
PG4
1
1
N
1
A
C8
PG4
202
E
C8
PG4
1
1
N
1
A
O5
PG4
202
E
O5
PG4
1
1
N
1
B
GLY
0
B
GLY
1
1
Y
1
B
B
O2
O
PO4
HOH
201
304
2.06
1
B
B
CE
OE2
MSE
GLU
1
158
2.13
A
1
B
B
CE
CG
MSE
GLU
1
158
2.19
A
1
-17.65
2.50
121.70
104.05
B
B
B
C
N
CA
MSE
THR
THR
1
2
2
B
Y
1
A
ILE
10
-102.47
-62.64
1
A
VAL
13
-125.24
-72.64
1
A
TRP
19
-159.05
53.89
1
A
VAL
64
-127.32
-50.35
1
A
PHE
65
-95.41
45.40
1
A
GLU
109
-174.71
138.91
1
B
ILE
10
-101.42
-66.38
1
B
VAL
13
-131.89
-69.13
1
B
TRP
19
-157.51
42.60
1
B
VAL
64
-131.01
-48.87
1
B
PHE
65
-94.16
40.04
1
B
ASP
70
-98.09
35.73
29.653
-0.760
0.000
0.000
-0.760
0.000
1.530
0.971
0.963
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY.
3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE
INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY
OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75
FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION.
4. NA ION, GLYCEROL (GOL), PHOSPHATE ION (PO4) AND PEG-8000 (PG4)
MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE MODELED.
5. THE OCCUPANCY OF PO4 AND GOL HAS BEEN REDUCED FOR OPTIMAL REFINEMENT.
0.187
0.160
0.161
1.660
35.355
2734
53757
5.100
99.870
3.601
0.060
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.088
0.086
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
1.660
35.355
323
3526
28
0
3175
0.016
0.022
3544
0.002
0.020
2537
1.669
1.974
4841
1.805
3.000
6108
4.467
5.000
467
30.043
22.438
201
11.921
15.000
632
11.824
15.000
56
0.102
0.200
523
0.008
0.020
4076
0.003
0.020
820
1.095
2.000
2104
0.234
2.000
846
2.019
4.000
3408
3.623
6.000
1440
5.774
8.000
1395
0.273
0.228
1.703
221
3668
3889
20
99.740
24.504
1.66
35.355
3CNH
53836
-3.00
0.055
1
17.740
99.800
0.716
1.66
1.72
2.1
27325
5323
1
99.70
0.514
1.72
1.79
3.4
36734
5372
1
99.90
0.335
1.79
1.87
5.2
36685
5205
1
100.00
0.242
1.87
1.97
7.6
38301
5385
1
100.00
0.152
1.97
2.09
11.6
37321
5189
1
100.00
0.102
2.09
2.25
17.0
38506
5344
1
100.00
0.073
2.25
2.48
22.4
39259
5467
1
100.00
0.058
2.48
2.84
27.9
38702
5429
1
100.00
0.039
2.84
3.57
35.8
38164
5439
1
99.90
0.031
3.57
35.355
41.5
38189
5780
1
99.00
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.4.0067
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
George Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html
XSCALE
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 2, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.000
data collection
MAR345
CCD
data reduction
XDS
phasing
SHELXD
phasing
autoSHARP
Crystal structure of predicted hydrolase of haloacid dehalogenase-like superfamily (NP_295428.1) from Deinococcus radiodurans at 1.66 A resolution
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
2
N
N
3
N
N
5
N
N
6
N
N
6
N
N
A
ASP
20
A
ASP
21
HELX_P
A
GLY
32
A
GLY
33
1
1
13
A
ASP
34
A
ASP
35
HELX_P
A
LEU
51
A
LEU
52
1
2
18
A
THR
55
A
THR
56
HELX_P
A
VAL
64
A
VAL
65
1
3
10
A
THR
72
A
THR
73
HELX_P
A
GLN
83
A
GLN
84
1
4
12
A
ARG
87
A
ARG
88
HELX_P
A
GLY
98
A
GLY
99
1
5
12
A
GLY
110
A
GLY
111
HELX_P
A
GLY
122
A
GLY
123
1
6
13
A
LEU
123
A
LEU
124
HELX_P
A
PHE
126
A
PHE
127
5
7
4
A
SER
133
A
SER
134
HELX_P
A
GLY
137
A
GLY
138
1
8
5
A
ASN
142
A
ASN
143
HELX_P
A
GLN
154
A
GLN
155
1
9
13
A
ARG
156
A
ARG
157
HELX_P
A
GLU
158
A
GLU
159
5
10
3
A
ARG
166
A
ARG
167
HELX_P
A
VAL
176
A
VAL
177
1
11
11
A
ASP
185
A
ASP
186
HELX_P
A
LEU
196
A
LEU
197
1
12
12
B
ASP
20
B
ASP
21
HELX_P
B
GLY
32
B
GLY
33
1
13
13
B
ASP
34
B
ASP
35
HELX_P
B
LEU
51
B
LEU
52
1
14
18
B
THR
55
B
THR
56
HELX_P
B
VAL
64
B
VAL
65
1
15
10
B
THR
72
B
THR
73
HELX_P
B
GLN
83
B
GLN
84
1
16
12
B
ARG
87
B
ARG
88
HELX_P
B
GLY
98
B
GLY
99
1
17
12
B
GLY
110
B
GLY
111
HELX_P
B
PHE
121
B
PHE
122
1
18
12
B
GLY
122
B
GLY
123
HELX_P
B
PHE
126
B
PHE
127
5
19
5
B
SER
133
B
SER
134
HELX_P
B
GLY
137
B
GLY
138
1
20
5
B
ASN
142
B
ASN
143
HELX_P
B
GLN
154
B
GLN
155
1
21
13
B
ARG
156
B
ARG
157
HELX_P
B
GLU
158
B
GLU
159
5
22
3
B
ARG
166
B
ARG
167
HELX_P
B
VAL
176
B
VAL
177
1
23
11
B
ASP
185
B
ASP
186
HELX_P
B
ALA
195
B
ALA
196
1
24
11
covale
1.333
both
A
GLY
0
A
C
GLY
1
1_555
A
MSE
1
A
N
MSE
2
1_555
covale
1.319
both
A
MSE
1
A
C
MSE
2
1_555
A
THR
2
A
N
THR
3
1_555
covale
1.320
both
A
ARG
53
A
C
ARG
54
1_555
A
MSE
54
A
N
MSE
55
1_555
covale
1.321
both
A
MSE
54
A
C
MSE
55
1_555
A
THR
55
A
N
THR
56
1_555
covale
1.326
both
A
VAL
79
A
C
VAL
80
1_555
A
MSE
80
A
N
MSE
81
1_555
covale
1.323
both
A
MSE
80
A
C
MSE
81
1_555
A
GLU
81
A
N
GLU
82
1_555
covale
1.319
both
A
ARG
102
A
C
ARG
103
1_555
A
MSE
103
A
N
MSE
104
1_555
covale
1.322
both
A
MSE
103
A
C
MSE
104
1_555
A
TYR
104
A
N
TYR
105
1_555
covale
1.324
both
A
VAL
138
A
C
VAL
139
1_555
A
MSE
139
A
N
MSE
140
1_555
covale
1.323
both
A
MSE
139
A
C
MSE
140
1_555
A
LYS
140
A
N
LYS
141
1_555
covale
1.326
both
A
ALA
144
A
C
ALA
145
1_555
A
MSE
145
A
N
MSE
146
1_555
covale
1.322
both
A
MSE
145
A
C
MSE
146
1_555
A
TYR
146
A
N
TYR
147
1_555
covale
1.329
both
A
VAL
161
A
C
VAL
162
1_555
A
MSE
162
A
N
MSE
163
1_555
covale
1.337
both
A
MSE
162
A
C
MSE
163
1_555
A
VAL
163
A
N
VAL
164
1_555
covale
1.311
both
A
GLY
177
A
C
GLY
178
1_555
A
MSE
178
A
N
MSE
179
1_555
covale
1.328
both
A
MSE
178
A
C
MSE
179
1_555
A
HIS
179
A
N
HIS
180
1_555
covale
1.318
both
A
B
MSE
1
B
C
MSE
2
1_555
B
THR
2
B
N
THR
3
1_555
covale
1.326
both
B
B
MSE
1
B
C
MSE
2
1_555
B
THR
2
B
N
THR
3
1_555
covale
1.322
both
B
ARG
53
B
C
ARG
54
1_555
B
MSE
54
B
N
MSE
55
1_555
covale
1.324
both
B
MSE
54
B
C
MSE
55
1_555
B
THR
55
B
N
THR
56
1_555
covale
1.333
both
B
VAL
79
B
C
VAL
80
1_555
B
MSE
80
B
N
MSE
81
1_555
covale
1.316
both
B
MSE
80
B
C
MSE
81
1_555
B
GLU
81
B
N
GLU
82
1_555
covale
1.321
both
B
ARG
102
B
C
ARG
103
1_555
B
MSE
103
B
N
MSE
104
1_555
covale
1.327
both
B
MSE
103
B
C
MSE
104
1_555
B
TYR
104
B
N
TYR
105
1_555
covale
1.321
both
B
VAL
138
B
C
VAL
139
1_555
B
MSE
139
B
N
MSE
140
1_555
covale
1.319
both
B
MSE
139
B
C
MSE
140
1_555
B
LYS
140
B
N
LYS
141
1_555
covale
1.332
both
B
ALA
144
B
C
ALA
145
1_555
B
MSE
145
B
N
MSE
146
1_555
covale
1.324
both
B
MSE
145
B
C
MSE
146
1_555
B
TYR
146
B
N
TYR
147
1_555
covale
1.334
both
B
VAL
161
B
C
VAL
162
1_555
B
MSE
162
B
N
MSE
163
1_555
covale
1.320
both
B
MSE
162
B
C
MSE
163
1_555
B
VAL
163
B
N
VAL
164
1_555
covale
1.328
both
B
GLY
177
B
C
GLY
178
1_555
B
MSE
178
B
N
MSE
179
1_555
covale
1.326
both
B
MSE
178
B
C
MSE
179
1_555
B
HIS
179
B
N
HIS
180
1_555
metalc
2.381
A
ASP
9
A
OD2
ASP
10
1_555
A
NA
200
C
NA
NA
1_555
metalc
2.282
A
GLY
11
A
O
GLY
12
1_555
A
NA
200
C
NA
NA
1_555
metalc
2.310
A
ASP
165
A
OD1
ASP
166
1_555
A
NA
200
C
NA
NA
1_555
metalc
2.628
A
NA
200
C
NA
NA
1_555
A
PO4
201
D
O2
PO4
1_555
metalc
2.253
A
NA
200
C
NA
NA
1_555
A
HOH
203
I
O
HOH
1_555
metalc
2.336
A
NA
200
C
NA
NA
1_555
A
HOH
204
I
O
HOH
1_555
metalc
2.386
B
ASP
9
B
OD2
ASP
10
1_555
B
NA
200
F
NA
NA
1_555
metalc
2.288
B
GLY
11
B
O
GLY
12
1_555
B
NA
200
F
NA
NA
1_555
metalc
2.359
B
ASP
165
B
OD1
ASP
166
1_555
B
NA
200
F
NA
NA
1_555
metalc
2.564
B
NA
200
F
NA
NA
1_555
B
PO4
201
G
O3
PO4
1_555
metalc
2.294
B
NA
200
F
NA
NA
1_555
B
HOH
303
J
O
HOH
1_555
metalc
2.414
A
B
NA
200
F
NA
NA
1_555
B
HOH
406
J
O
HOH
1_555
metalc
2.180
B
B
NA
200
F
NA
NA
1_555
B
HOH
406
J
O
HOH
1_555
HYDROLASE
NP_295428.1, predicted hydrolase of haloacid dehalogenase-like superfamily, haloacid dehalogenase-like hydrolase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE
A
LYS
140
A
LYS
141
1
A
PRO
141
A
PRO
142
5.50
B
LYS
140
B
LYS
141
1
B
PRO
141
B
PRO
142
4.09
Q9RTQ1_DEIRA
UNP
1
1
Q9RTQ1
MTIKALFWDIGGVLLTNGWDREQRADVAQRFGLDTDDFTERHRLAAPELELGRMTLAEYLEQVVFYQPRDFTPEDFRAVM
EEQSQPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEA
VMVDDRLQNVQAARAVGMHAVQCVDAAQLREELAALGVR
1
199
3CNH
1
199
Q9RTQ1
A
1
2
200
1
199
3CNH
1
199
Q9RTQ1
B
1
2
200
1
expression tag
GLY
0
3CNH
A
Q9RTQ1
UNP
1
2
expression tag
GLY
0
3CNH
B
Q9RTQ1
UNP
1
5
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
PHE
130
A
PHE
131
A
THR
132
A
THR
133
A
ARG
102
A
ARG
103
A
ASN
107
A
ASN
108
A
ALA
5
A
ALA
6
A
TRP
8
A
TRP
9
A
ALA
160
A
ALA
161
A
ASP
164
A
ASP
165
A
HIS
179
A
HIS
180
A
GLN
182
A
GLN
183
B
PHE
130
B
PHE
131
B
THR
132
B
THR
133
B
ARG
102
B
ARG
103
B
ASN
107
B
ASN
108
B
ALA
5
B
ALA
6
B
TRP
8
B
TRP
9
B
ALA
160
B
ALA
161
B
ASP
164
B
ASP
165
B
HIS
179
B
HIS
180
B
GLN
182
B
GLN
183
BINDING SITE FOR RESIDUE NA A 200
A
NA
200
Software
3
BINDING SITE FOR RESIDUE NA B 200
B
NA
200
Software
3
BINDING SITE FOR RESIDUE PO4 A 201
A
PO4
201
Software
6
BINDING SITE FOR RESIDUE PO4 B 201
B
PO4
201
Software
6
BINDING SITE FOR RESIDUE PG4 A 202
A
PG4
202
Software
3
BINDING SITE FOR RESIDUE GOL B 202
B
GOL
202
Software
4
A
ASP
9
A
ASP
10
3
1_555
A
GLY
11
A
GLY
12
3
1_555
A
ASP
165
A
ASP
166
3
1_555
B
ASP
9
B
ASP
10
3
1_555
B
GLY
11
B
GLY
12
3
1_555
B
ASP
165
B
ASP
166
3
1_555
A
ASP
9
A
ASP
10
6
1_555
A
ILE
10
A
ILE
11
6
1_555
A
GLY
11
A
GLY
12
6
1_555
A
ASN
107
A
ASN
108
6
1_555
A
ASN
108
A
ASN
109
6
1_555
A
LYS
140
A
LYS
141
6
1_555
B
ASP
9
B
ASP
10
6
1_555
B
ILE
10
B
ILE
11
6
1_555
B
GLY
11
B
GLY
12
6
1_555
B
ASN
107
B
ASN
108
6
1_555
B
ASN
108
B
ASN
109
6
1_555
B
LYS
140
B
LYS
141
6
1_555
A
ARG
100
A
ARG
101
3
1_555
A
TYR
101
A
TYR
102
3
1_555
B
GLY
98
B
GLY
99
3
1_555
B
LEU
56
B
LEU
57
4
1_555
B
ALA
57
B
ALA
58
4
1_555
B
PRO
73
B
PRO
74
4
1_555
B
ARG
77
B
ARG
78
4
1_555
92
P 41 21 2