0.015726
0.000000
0.000000
0.000000
0.015726
0.000000
0.000000
0.000000
0.020726
0.00000
0.00000
0.00000
Charpentier, T.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
63.587
63.587
48.248
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C19 H24 N4 O2
340.419
1,5-BIS(4-AMIDINOPHENOXY)PENTANE
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
N
N
296
N
N
N
297
N
N
N
298
N
N
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
R
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
doub
Y
261
N
sing
N
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
sing
N
268
N
sing
Y
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
Y
284
N
doub
Y
285
N
sing
N
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
382
56
73
10.1016/j.jmb.2008.06.047
18602402
Divalent metal ion complexes of S100B in the absence and presence of pentamidine.
2008
10.2210/pdb3cr4/pdb
pdb_00003cr4
100
1
IMAGE PLATE
2005-08-05
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
10681.974
Protein S100-B
1
man
polymer
340.419
1,5-BIS(4-AMIDINOPHENOXY)PENTANE
2
syn
non-polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
35
nat
water
S100 calcium-binding protein B, S-100 protein subunit beta, S-100 protein beta chain
no
no
MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bovine
sample
S100B
Bos taurus
Escherichia coli
HMS174(DE3)
plasmid
pET11b
1
2.28
46.12
VAPOR DIFFUSION, SITTING DROP
7.1
PEG3350, CaCl2, Penamidine, Cacodylate buffer, pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Advisory
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2008-08-05
1
1
2011-07-13
1
2
2017-10-25
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-04-04
REL
REL
PNT
1,5-BIS(4-AMIDINOPHENOXY)PENTANE
CA
CALCIUM ION
HOH
water
PNT
101
2
PNT
PNT
101
X
PNT
101
2
PNT
PNT
102
X
CA
90
3
CA
CA
103
X
CA
91
3
CA
CA
104
X
HOH
1
4
HOH
HOH
105
X
HOH
2
4
HOH
HOH
106
X
HOH
3
4
HOH
HOH
107
X
HOH
4
4
HOH
HOH
108
X
HOH
5
4
HOH
HOH
109
X
HOH
6
4
HOH
HOH
110
X
HOH
7
4
HOH
HOH
111
X
HOH
8
4
HOH
HOH
112
X
HOH
9
4
HOH
HOH
113
X
HOH
10
4
HOH
HOH
114
X
HOH
11
4
HOH
HOH
115
X
HOH
12
4
HOH
HOH
116
X
HOH
13
4
HOH
HOH
117
X
HOH
14
4
HOH
HOH
118
X
HOH
15
4
HOH
HOH
119
X
HOH
16
4
HOH
HOH
120
X
HOH
17
4
HOH
HOH
121
X
HOH
18
4
HOH
HOH
122
X
HOH
19
4
HOH
HOH
123
X
HOH
20
4
HOH
HOH
124
X
HOH
21
4
HOH
HOH
125
X
HOH
22
4
HOH
HOH
126
X
HOH
23
4
HOH
HOH
127
X
HOH
24
4
HOH
HOH
128
X
HOH
25
4
HOH
HOH
129
X
HOH
26
4
HOH
HOH
130
X
HOH
27
4
HOH
HOH
131
X
HOH
28
4
HOH
HOH
132
X
HOH
29
4
HOH
HOH
133
X
HOH
30
4
HOH
HOH
134
X
HOH
31
4
HOH
HOH
135
X
HOH
32
4
HOH
HOH
136
X
HOH
33
4
HOH
HOH
137
X
HOH
34
4
HOH
HOH
138
X
HOH
35
4
HOH
HOH
139
X
2.530
2.530
38.440
38.440
MET
0
n
1
MET
0
X
SER
1
n
2
SER
1
X
GLU
2
n
3
GLU
2
X
LEU
3
n
4
LEU
3
X
GLU
4
n
5
GLU
4
X
LYS
5
n
6
LYS
5
X
ALA
6
n
7
ALA
6
X
VAL
7
n
8
VAL
7
X
VAL
8
n
9
VAL
8
X
ALA
9
n
10
ALA
9
X
LEU
10
n
11
LEU
10
X
ILE
11
n
12
ILE
11
X
ASP
12
n
13
ASP
12
X
VAL
13
n
14
VAL
13
X
PHE
14
n
15
PHE
14
X
HIS
15
n
16
HIS
15
X
GLN
16
n
17
GLN
16
X
TYR
17
n
18
TYR
17
X
SER
18
n
19
SER
18
X
GLY
19
n
20
GLY
19
X
ARG
20
n
21
ARG
20
X
GLU
21
n
22
GLU
21
X
GLY
22
n
23
GLY
22
X
ASP
23
n
24
ASP
23
X
LYS
24
n
25
LYS
24
X
HIS
25
n
26
HIS
25
X
LYS
26
n
27
LYS
26
X
LEU
27
n
28
LEU
27
X
LYS
28
n
29
LYS
28
X
LYS
29
n
30
LYS
29
X
SER
30
n
31
SER
30
X
GLU
31
n
32
GLU
31
X
LEU
32
n
33
LEU
32
X
LYS
33
n
34
LYS
33
X
GLU
34
n
35
GLU
34
X
LEU
35
n
36
LEU
35
X
ILE
36
n
37
ILE
36
X
ASN
37
n
38
ASN
37
X
ASN
38
n
39
ASN
38
X
GLU
39
n
40
GLU
39
X
LEU
40
n
41
LEU
40
X
SER
41
n
42
SER
41
X
HIS
42
n
43
HIS
42
X
PHE
43
n
44
PHE
43
X
LEU
44
n
45
LEU
44
X
GLU
45
n
46
GLU
45
X
GLU
46
n
47
GLU
46
X
ILE
47
n
48
ILE
47
X
LYS
48
n
49
LYS
48
X
GLU
49
n
50
GLU
49
X
GLN
50
n
51
GLN
50
X
GLU
51
n
52
GLU
51
X
VAL
52
n
53
VAL
52
X
VAL
53
n
54
VAL
53
X
ASP
54
n
55
ASP
54
X
LYS
55
n
56
LYS
55
X
VAL
56
n
57
VAL
56
X
MET
57
n
58
MET
57
X
GLU
58
n
59
GLU
58
X
THR
59
n
60
THR
59
X
LEU
60
n
61
LEU
60
X
ASP
61
n
62
ASP
61
X
SER
62
n
63
SER
62
X
ASP
63
n
64
ASP
63
X
GLY
64
n
65
GLY
64
X
ASP
65
n
66
ASP
65
X
GLY
66
n
67
GLY
66
X
GLU
67
n
68
GLU
67
X
CYS
68
n
69
CYS
68
X
ASP
69
n
70
ASP
69
X
PHE
70
n
71
PHE
70
X
GLN
71
n
72
GLN
71
X
GLU
72
n
73
GLU
72
X
PHE
73
n
74
PHE
73
X
MET
74
n
75
MET
74
X
ALA
75
n
76
ALA
75
X
PHE
76
n
77
PHE
76
X
VAL
77
n
78
VAL
77
X
ALA
78
n
79
ALA
78
X
MET
79
n
80
MET
79
X
ILE
80
n
81
ILE
80
X
THR
81
n
82
THR
81
X
THR
82
n
83
THR
82
X
ALA
83
n
84
ALA
83
X
CYS
84
n
85
CYS
84
X
HIS
85
n
86
HIS
85
X
GLU
86
n
87
GLU
86
X
PHE
87
n
88
PHE
87
X
PHE
88
n
89
PHE
88
X
GLU
89
n
90
GLU
89
X
n
91
90
X
n
92
91
X
4.7768
0.3722
-1.6573
3.3515
-0.6051
2.7285
0.0054
-0.0311
0.2702
0.3327
-0.1041
-0.3580
-0.2390
0.1208
0.0987
-0.0758
0.0231
-0.0427
-0.1203
0.0641
-0.0789
refined
13.8196
1.0811
9.9934
X-RAY DIFFRACTION
X
0
A
1
X
89
A
90
X-RAY DIFFRACTION
1
X
101
B
X
101
B
X-RAY DIFFRACTION
1
X
105
F
X
139
F
X-RAY DIFFRACTION
1
X
102
C
X
102
C
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
4190
-63.9
10880
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
21
A
O
GLU
22
1_555
98.7
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
X
ASP
23
A
O
ASP
24
1_555
85.1
X
GLU
21
A
O
GLU
22
1_555
X
CA
103
D
CA
CA
1_555
X
ASP
23
A
O
ASP
24
1_555
86.1
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
X
LYS
26
A
O
LYS
27
1_555
88.6
X
GLU
21
A
O
GLU
22
1_555
X
CA
103
D
CA
CA
1_555
X
LYS
26
A
O
LYS
27
1_555
167.2
X
ASP
23
A
O
ASP
24
1_555
X
CA
103
D
CA
CA
1_555
X
LYS
26
A
O
LYS
27
1_555
84.1
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE1
GLU
32
1_555
96.6
X
GLU
21
A
O
GLU
22
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE1
GLU
32
1_555
115.3
X
ASP
23
A
O
ASP
24
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE1
GLU
32
1_555
157.8
X
LYS
26
A
O
LYS
27
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE1
GLU
32
1_555
73.9
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE2
GLU
32
1_555
73.7
X
GLU
21
A
O
GLU
22
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE2
GLU
32
1_555
74.5
X
ASP
23
A
O
ASP
24
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE2
GLU
32
1_555
148.4
X
LYS
26
A
O
LYS
27
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE2
GLU
32
1_555
117.9
X
GLU
31
A
OE1
GLU
32
1_555
X
CA
103
D
CA
CA
1_555
X
GLU
31
A
OE2
GLU
32
1_555
50.9
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
170.1
X
GLU
21
A
O
GLU
22
1_555
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
88.6
X
ASP
23
A
O
ASP
24
1_555
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
88.8
X
LYS
26
A
O
LYS
27
1_555
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
83.0
X
GLU
31
A
OE1
GLU
32
1_555
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
86.2
X
GLU
31
A
OE2
GLU
32
1_555
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
115.0
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
X
ASP
63
A
OD1
ASP
64
1_555
81.8
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
X
ASP
65
A
OD1
ASP
66
1_555
85.0
X
ASP
63
A
OD1
ASP
64
1_555
X
CA
104
E
CA
CA
1_555
X
ASP
65
A
OD1
ASP
66
1_555
81.4
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
67
A
O
GLU
68
1_555
87.7
X
ASP
63
A
OD1
ASP
64
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
67
A
O
GLU
68
1_555
160.2
X
ASP
65
A
OD1
ASP
66
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
67
A
O
GLU
68
1_555
80.9
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE1
GLU
73
1_555
116.1
X
ASP
63
A
OD1
ASP
64
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE1
GLU
73
1_555
124.1
X
ASP
65
A
OD1
ASP
66
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE1
GLU
73
1_555
147.3
X
GLU
67
A
O
GLU
68
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE1
GLU
73
1_555
75.6
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE2
GLU
73
1_555
89.1
X
ASP
63
A
OD1
ASP
64
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE2
GLU
73
1_555
79.5
X
ASP
65
A
OD1
ASP
66
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE2
GLU
73
1_555
160.7
X
GLU
67
A
O
GLU
68
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE2
GLU
73
1_555
117.3
X
GLU
72
A
OE1
GLU
73
1_555
X
CA
104
E
CA
CA
1_555
X
GLU
72
A
OE2
GLU
73
1_555
50.8
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
160.8
X
ASP
63
A
OD1
ASP
64
1_555
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
89.9
X
ASP
65
A
OD1
ASP
66
1_555
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
76.6
X
GLU
67
A
O
GLU
68
1_555
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
94.7
X
GLU
72
A
OE1
GLU
73
1_555
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
82.9
X
GLU
72
A
OE2
GLU
73
1_555
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
106.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
24.1240000000
1
X
HIS
90
A
HIS
91
1
Y
1
X
GLU
91
A
GLU
92
1
Y
35.872
-0.32
0.00
0.00
-0.32
0.00
0.64
0.950
0.891
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26596
0.20858
0.21086
2.15
44.95
263
5502
4.6
99.98
13.390
0.152
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.274
0.223
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.15
44.95
35
814
52
0
727
0.008
0.021
790
1.135
2.019
1053
4.409
5.000
89
35.177
26.500
40
16.115
15.000
145
8.486
15.000
1
0.091
0.200
108
0.003
0.020
598
0.213
0.200
365
0.302
0.200
534
0.117
0.200
39
0.097
0.200
9
0.162
0.200
52
0.144
0.200
9
0.458
1.500
460
0.713
2.000
714
1.082
3.000
368
1.671
4.500
339
0.267
0.252
2.203
27
390
20
99.76
2.150
50.000
3CR4
5795
0.081
1
9.600
12.000
100.000
0.666
2.15
2.23
1
12.10
100.00
0.502
2.23
2.32
1
12.10
100.00
0.375
2.32
2.42
1
12.20
100.00
0.281
2.42
2.55
1
12.10
100.00
0.227
2.55
2.71
1
12.30
100.00
0.142
2.71
2.92
1
12.20
100.00
0.106
2.92
3.21
1
12.20
100.00
0.064
3.21
3.68
1
12.20
100.00
0.046
3.68
4.63
1
11.90
100.00
0.031
4.63
50.00
1
11.00
99.70
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.005
data collection
CrystalClear
X-ray structure of bovine Pnt,Ca(2+)-S100B
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
X
SER
1
A
SER
2
HELX_P
X
GLY
19
A
GLY
20
1
1
19
X
LYS
28
A
LYS
29
HELX_P
X
LEU
40
A
LEU
41
1
2
13
X
GLU
49
A
GLU
50
HELX_P
X
ASP
61
A
ASP
62
1
3
13
X
ASP
69
A
ASP
70
HELX_P
X
GLU
86
A
GLU
87
1
4
18
metalc
2.286
X
SER
18
A
O
SER
19
1_555
X
CA
103
D
CA
CA
1_555
metalc
2.400
X
GLU
21
A
O
GLU
22
1_555
X
CA
103
D
CA
CA
1_555
metalc
2.377
X
ASP
23
A
O
ASP
24
1_555
X
CA
103
D
CA
CA
1_555
metalc
2.394
X
LYS
26
A
O
LYS
27
1_555
X
CA
103
D
CA
CA
1_555
metalc
2.494
X
GLU
31
A
OE1
GLU
32
1_555
X
CA
103
D
CA
CA
1_555
metalc
2.554
X
GLU
31
A
OE2
GLU
32
1_555
X
CA
103
D
CA
CA
1_555
metalc
2.303
X
ASP
61
A
OD1
ASP
62
1_555
X
CA
104
E
CA
CA
1_555
metalc
2.306
X
ASP
63
A
OD1
ASP
64
1_555
X
CA
104
E
CA
CA
1_555
metalc
2.298
X
ASP
65
A
OD1
ASP
66
1_555
X
CA
104
E
CA
CA
1_555
metalc
2.344
X
GLU
67
A
O
GLU
68
1_555
X
CA
104
E
CA
CA
1_555
metalc
2.540
X
GLU
72
A
OE1
GLU
73
1_555
X
CA
104
E
CA
CA
1_555
metalc
2.569
X
GLU
72
A
OE2
GLU
73
1_555
X
CA
104
E
CA
CA
1_555
metalc
2.292
X
CA
103
D
CA
CA
1_555
X
HOH
105
F
O
HOH
1_555
metalc
2.485
X
CA
104
E
CA
CA
1_555
X
HOH
112
F
O
HOH
1_555
METAL BINDING PROTEIN
EF hand, Alpha helical, Metal-binding, Nucleus, METAL BINDING PROTEIN
S100B_BOVIN
UNP
1
1
P02638
MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM
ITTACHEFFEHE
1
92
3CR4
0
91
P02638
X
1
1
92
BINDING SITE FOR RESIDUE PNT X 101
X
PNT
101
Software
7
BINDING SITE FOR RESIDUE PNT X 102
X
PNT
102
Software
4
BINDING SITE FOR RESIDUE CA X 103
X
CA
103
Software
6
BINDING SITE FOR RESIDUE CA X 104
X
CA
104
Software
6
X
MET
0
A
MET
1
7
2_555
X
ILE
11
A
ILE
12
7
2_555
X
ASP
12
A
ASP
13
7
2_555
X
HIS
15
A
HIS
16
7
2_555
X
CYS
84
A
CYS
85
7
7_556
X
HIS
85
A
HIS
86
7
1_555
X
PHE
87
A
PHE
88
7
1_555
X
MET
0
A
MET
1
4
8_555
X
HIS
42
A
HIS
43
4
7_556
X
PHE
43
A
PHE
44
4
1_555
X
PHE
88
A
PHE
89
4
1_555
X
SER
18
A
SER
19
6
1_555
X
GLU
21
A
GLU
22
6
1_555
X
ASP
23
A
ASP
24
6
1_555
X
LYS
26
A
LYS
27
6
1_555
X
GLU
31
A
GLU
32
6
1_555
X
HOH
105
F
HOH
6
1_555
X
ASP
61
A
ASP
62
6
1_555
X
ASP
63
A
ASP
64
6
1_555
X
ASP
65
A
ASP
66
6
1_555
X
GLU
67
A
GLU
68
6
1_555
X
GLU
72
A
GLU
73
6
1_555
X
HOH
112
F
HOH
6
1_555
92
P 41 21 2