0.028693 0.000000 0.001268 0.000000 0.021576 0.000000 0.000000 0.000000 0.026819 0.000000 0.000000 0.000000 Jia, X. Geiger, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 92.530 90.000 34.852 46.347 37.324 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C15 H24 204.351 1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene non-polymer C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N O N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 S C N 145 N C N 146 N C N 147 N C N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 N C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N C N 185 N C N 186 N C N 187 N C N 188 N C N 189 N C N 190 N C N 191 N C N 192 N C N 193 N C N 194 N C N 195 N C N 196 N C N 197 N C N 198 N C N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 N C N 228 N C N 229 N C N 230 N C N 231 N N N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N S N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C Y 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N O N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 R C N 327 N O N 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N N Y 348 N C Y 349 N C Y 350 N C Y 351 N C Y 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N N N 367 S C N 368 N C N 369 N O N 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C N 395 N C N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 E sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 E sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing Y 266 N doub Y 267 N sing Y 268 N sing N 269 N sing Y 270 N doub N 271 N sing Y 272 N doub N 273 N sing Y 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing Y 335 N doub Y 336 N sing Y 337 N sing N 338 N sing Y 339 N doub Y 340 N sing Y 341 N sing N 342 N sing Y 343 N sing Y 344 N doub N 345 N sing Y 346 N doub N 347 N sing Y 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub N 368 N sing Y 369 N doub N 370 N sing Y 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing To be Published 0353 Two distinctive orientations of binding determined by a single mutation in the CRABPII mutant-C15-aldehyde complexes To be Published 0353 Protein engineering: wavelength regulation mechanism investigated in a rhodopsin mimic 10.2210/pdb3cr6/pdb pdb_00003cr6 100 1 CCD 2007-04-08 MARMOSAIC 300 mm CCD C(111) SINGLE WAVELENGTH M x-ray 1 0.97869 1.0 21-ID-D APS 0.97869 SYNCHROTRON APS BEAMLINE 21-ID-D 15567.790 Cellular retinoic acid-binding protein 2 R132K, R111L, A32E 1 man polymer 204.351 1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene 1 syn non-polymer 18.015 water 310 nat water Cellular retinoic acid- binding protein II, CRABP-II, Retinoic acid-binding protein II, cellular no no PNFSGNWKIIRSENFEELLKVLGVNVMLRKIEVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVYVRE PNFSGNWKIIRSENFEELLKVLGVNVMLRKIEVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVYVRE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample CRABP2 9606 Homo sapiens 562 Escherichia coli BL21(DE3)pLysS plasmid CRABPII-pET17b-KL-A32E 1 1.93 36.42 VAPOR DIFFUSION, HANGING DROP 7.5 0.1M sodium citrate, 0.2M ammonium acetate, 26% PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 software database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Structure summary Refinement description Database references Derived calculations Data collection Refinement description 1 0 2009-03-17 1 1 2011-07-13 1 2 2016-12-28 1 3 2017-10-25 1 4 2021-10-20 1 5 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2008-04-04 REL REL LSR 1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene HOH water 2G7B PDB entry 2G7B PDB experimental model LSR 138 2 LSR LSR 138 A HOH 1 3 HOH HOH 139 A HOH 2 3 HOH HOH 140 A HOH 3 3 HOH HOH 141 A HOH 4 3 HOH HOH 142 A HOH 5 3 HOH HOH 143 A HOH 6 3 HOH HOH 144 A HOH 7 3 HOH HOH 145 A HOH 8 3 HOH HOH 146 A HOH 9 3 HOH HOH 147 A HOH 10 3 HOH HOH 148 A HOH 11 3 HOH HOH 149 A HOH 12 3 HOH HOH 150 A HOH 13 3 HOH HOH 151 A HOH 14 3 HOH HOH 152 A HOH 15 3 HOH HOH 153 A HOH 16 3 HOH HOH 154 A HOH 17 3 HOH HOH 155 A HOH 18 3 HOH HOH 156 A HOH 19 3 HOH HOH 157 A HOH 20 3 HOH HOH 158 A HOH 21 3 HOH HOH 159 A HOH 22 3 HOH HOH 160 A HOH 23 3 HOH HOH 161 A HOH 24 3 HOH HOH 162 A HOH 25 3 HOH HOH 163 A HOH 26 3 HOH HOH 164 A HOH 27 3 HOH HOH 165 A HOH 28 3 HOH HOH 166 A HOH 29 3 HOH HOH 167 A HOH 30 3 HOH HOH 168 A HOH 31 3 HOH HOH 169 A HOH 32 3 HOH HOH 170 A HOH 33 3 HOH HOH 171 A HOH 34 3 HOH HOH 172 A HOH 35 3 HOH HOH 173 A HOH 36 3 HOH HOH 174 A HOH 37 3 HOH HOH 175 A HOH 38 3 HOH HOH 176 A HOH 39 3 HOH HOH 177 A HOH 40 3 HOH HOH 178 A HOH 41 3 HOH HOH 179 A HOH 42 3 HOH HOH 180 A HOH 43 3 HOH HOH 181 A HOH 44 3 HOH HOH 182 A HOH 45 3 HOH HOH 183 A HOH 46 3 HOH HOH 184 A HOH 47 3 HOH HOH 185 A HOH 48 3 HOH HOH 186 A HOH 49 3 HOH HOH 187 A HOH 50 3 HOH HOH 188 A HOH 51 3 HOH HOH 189 A HOH 52 3 HOH HOH 190 A HOH 53 3 HOH HOH 191 A HOH 54 3 HOH HOH 192 A HOH 55 3 HOH HOH 193 A HOH 56 3 HOH HOH 194 A HOH 57 3 HOH HOH 195 A HOH 58 3 HOH HOH 196 A HOH 59 3 HOH HOH 197 A HOH 60 3 HOH HOH 198 A HOH 61 3 HOH HOH 199 A HOH 62 3 HOH HOH 200 A HOH 63 3 HOH HOH 201 A HOH 64 3 HOH HOH 202 A HOH 65 3 HOH HOH 203 A HOH 66 3 HOH HOH 204 A HOH 67 3 HOH HOH 205 A HOH 68 3 HOH HOH 206 A HOH 69 3 HOH HOH 207 A HOH 70 3 HOH HOH 208 A HOH 71 3 HOH HOH 209 A HOH 72 3 HOH HOH 210 A HOH 73 3 HOH HOH 211 A HOH 74 3 HOH HOH 212 A HOH 75 3 HOH HOH 213 A HOH 76 3 HOH HOH 214 A HOH 77 3 HOH HOH 215 A HOH 78 3 HOH HOH 216 A HOH 79 3 HOH HOH 217 A HOH 80 3 HOH HOH 218 A HOH 81 3 HOH HOH 219 A HOH 82 3 HOH HOH 220 A HOH 83 3 HOH HOH 221 A HOH 84 3 HOH HOH 222 A HOH 85 3 HOH HOH 223 A HOH 86 3 HOH HOH 224 A HOH 87 3 HOH HOH 225 A HOH 88 3 HOH HOH 226 A HOH 89 3 HOH HOH 227 A HOH 90 3 HOH HOH 228 A HOH 91 3 HOH HOH 229 A HOH 92 3 HOH HOH 230 A HOH 93 3 HOH HOH 231 A HOH 94 3 HOH HOH 232 A HOH 95 3 HOH HOH 233 A HOH 96 3 HOH HOH 234 A HOH 97 3 HOH HOH 235 A HOH 98 3 HOH HOH 236 A HOH 99 3 HOH HOH 237 A HOH 100 3 HOH HOH 238 A HOH 101 3 HOH HOH 239 A HOH 102 3 HOH HOH 240 A HOH 103 3 HOH HOH 241 A HOH 104 3 HOH HOH 242 A HOH 105 3 HOH HOH 243 A HOH 106 3 HOH HOH 244 A HOH 107 3 HOH HOH 245 A HOH 108 3 HOH HOH 246 A HOH 109 3 HOH HOH 247 A HOH 110 3 HOH HOH 248 A HOH 111 3 HOH HOH 249 A HOH 112 3 HOH HOH 250 A HOH 113 3 HOH HOH 251 A HOH 114 3 HOH HOH 252 A HOH 115 3 HOH HOH 253 A HOH 116 3 HOH HOH 254 A HOH 117 3 HOH HOH 255 A HOH 118 3 HOH HOH 256 A HOH 119 3 HOH HOH 257 A HOH 120 3 HOH HOH 258 A HOH 121 3 HOH HOH 259 A HOH 122 3 HOH HOH 260 A HOH 123 3 HOH HOH 261 A HOH 124 3 HOH HOH 262 A HOH 125 3 HOH HOH 263 A HOH 126 3 HOH HOH 264 A HOH 127 3 HOH HOH 265 A HOH 128 3 HOH HOH 266 A HOH 129 3 HOH HOH 267 A HOH 130 3 HOH HOH 268 A HOH 131 3 HOH HOH 269 A HOH 132 3 HOH HOH 270 A HOH 133 3 HOH HOH 271 A HOH 134 3 HOH HOH 272 A HOH 135 3 HOH HOH 273 A HOH 136 3 HOH HOH 274 A HOH 137 3 HOH HOH 275 A HOH 138 3 HOH HOH 276 A HOH 139 3 HOH HOH 277 A HOH 140 3 HOH HOH 278 A HOH 141 3 HOH HOH 279 A HOH 142 3 HOH HOH 280 A HOH 143 3 HOH HOH 281 A HOH 144 3 HOH HOH 282 A HOH 145 3 HOH HOH 283 A HOH 146 3 HOH HOH 284 A HOH 147 3 HOH HOH 285 A HOH 148 3 HOH HOH 286 A HOH 149 3 HOH HOH 287 A HOH 150 3 HOH HOH 288 A HOH 151 3 HOH HOH 289 A HOH 152 3 HOH HOH 290 A HOH 153 3 HOH HOH 291 A HOH 154 3 HOH HOH 292 A HOH 155 3 HOH HOH 293 A HOH 156 3 HOH HOH 294 A HOH 157 3 HOH HOH 295 A HOH 158 3 HOH HOH 296 A HOH 159 3 HOH HOH 297 A HOH 160 3 HOH HOH 298 A HOH 161 3 HOH HOH 299 A HOH 162 3 HOH HOH 300 A HOH 163 3 HOH HOH 301 A HOH 164 3 HOH HOH 302 A HOH 165 3 HOH HOH 303 A HOH 166 3 HOH HOH 304 A HOH 167 3 HOH HOH 305 A HOH 168 3 HOH HOH 306 A HOH 169 3 HOH HOH 307 A HOH 170 3 HOH HOH 308 A HOH 171 3 HOH HOH 309 A HOH 172 3 HOH HOH 310 A HOH 173 3 HOH HOH 311 A HOH 174 3 HOH HOH 312 A HOH 175 3 HOH HOH 313 A HOH 176 3 HOH HOH 314 A HOH 177 3 HOH HOH 315 A HOH 178 3 HOH HOH 316 A HOH 179 3 HOH HOH 317 A HOH 180 3 HOH HOH 318 A HOH 181 3 HOH HOH 319 A HOH 182 3 HOH HOH 320 A HOH 183 3 HOH HOH 321 A HOH 184 3 HOH HOH 322 A HOH 185 3 HOH HOH 323 A HOH 186 3 HOH HOH 324 A HOH 187 3 HOH HOH 325 A HOH 188 3 HOH HOH 326 A HOH 189 3 HOH HOH 327 A HOH 190 3 HOH HOH 328 A HOH 191 3 HOH HOH 329 A HOH 192 3 HOH HOH 330 A HOH 193 3 HOH HOH 331 A HOH 194 3 HOH HOH 332 A HOH 195 3 HOH HOH 333 A HOH 196 3 HOH HOH 334 A HOH 197 3 HOH HOH 335 A HOH 198 3 HOH HOH 336 A HOH 199 3 HOH HOH 337 A HOH 200 3 HOH HOH 338 A HOH 201 3 HOH HOH 339 A HOH 202 3 HOH HOH 340 A HOH 203 3 HOH HOH 341 A HOH 204 3 HOH HOH 342 A HOH 205 3 HOH HOH 343 A HOH 206 3 HOH HOH 344 A HOH 207 3 HOH HOH 345 A HOH 208 3 HOH HOH 346 A HOH 209 3 HOH HOH 347 A HOH 210 3 HOH HOH 348 A HOH 211 3 HOH HOH 349 A HOH 212 3 HOH HOH 350 A HOH 213 3 HOH HOH 351 A HOH 214 3 HOH HOH 352 A HOH 215 3 HOH HOH 353 A HOH 216 3 HOH HOH 354 A HOH 217 3 HOH HOH 355 A HOH 218 3 HOH HOH 356 A HOH 219 3 HOH HOH 357 A HOH 220 3 HOH HOH 358 A HOH 221 3 HOH HOH 359 A HOH 222 3 HOH HOH 360 A HOH 223 3 HOH HOH 361 A HOH 224 3 HOH HOH 362 A HOH 225 3 HOH HOH 363 A HOH 226 3 HOH HOH 364 A HOH 227 3 HOH HOH 365 A HOH 228 3 HOH HOH 366 A HOH 229 3 HOH HOH 367 A HOH 230 3 HOH HOH 368 A HOH 231 3 HOH HOH 369 A HOH 232 3 HOH HOH 370 A HOH 233 3 HOH HOH 371 A HOH 234 3 HOH HOH 372 A HOH 235 3 HOH HOH 373 A HOH 236 3 HOH HOH 374 A HOH 237 3 HOH HOH 375 A HOH 238 3 HOH HOH 376 A HOH 239 3 HOH HOH 377 A HOH 240 3 HOH HOH 378 A HOH 241 3 HOH HOH 379 A HOH 242 3 HOH HOH 380 A HOH 243 3 HOH HOH 381 A HOH 244 3 HOH HOH 382 A HOH 245 3 HOH HOH 383 A HOH 246 3 HOH HOH 384 A HOH 247 3 HOH HOH 385 A HOH 248 3 HOH HOH 386 A HOH 249 3 HOH HOH 387 A HOH 250 3 HOH HOH 388 A HOH 251 3 HOH HOH 389 A HOH 252 3 HOH HOH 390 A HOH 253 3 HOH HOH 391 A HOH 254 3 HOH HOH 392 A HOH 255 3 HOH HOH 393 A HOH 256 3 HOH HOH 394 A HOH 257 3 HOH HOH 395 A HOH 258 3 HOH HOH 396 A HOH 259 3 HOH HOH 397 A HOH 260 3 HOH HOH 398 A HOH 261 3 HOH HOH 399 A HOH 262 3 HOH HOH 400 A HOH 263 3 HOH HOH 401 A HOH 264 3 HOH HOH 402 A HOH 265 3 HOH HOH 403 A HOH 266 3 HOH HOH 404 A HOH 267 3 HOH HOH 405 A HOH 268 3 HOH HOH 406 A HOH 269 3 HOH HOH 407 A HOH 270 3 HOH HOH 408 A HOH 271 3 HOH HOH 409 A HOH 272 3 HOH HOH 410 A HOH 273 3 HOH HOH 411 A HOH 274 3 HOH HOH 412 A HOH 275 3 HOH HOH 413 A HOH 276 3 HOH HOH 414 A HOH 277 3 HOH HOH 415 A HOH 278 3 HOH HOH 416 A HOH 279 3 HOH HOH 417 A HOH 280 3 HOH HOH 418 A HOH 281 3 HOH HOH 419 A HOH 282 3 HOH HOH 420 A HOH 283 3 HOH HOH 421 A HOH 284 3 HOH HOH 422 A HOH 285 3 HOH HOH 423 A HOH 286 3 HOH HOH 424 A HOH 287 3 HOH HOH 425 A HOH 288 3 HOH HOH 426 A HOH 289 3 HOH HOH 427 A HOH 290 3 HOH HOH 428 A HOH 291 3 HOH HOH 429 A HOH 292 3 HOH HOH 430 A HOH 293 3 HOH HOH 431 A HOH 294 3 HOH HOH 432 A HOH 295 3 HOH HOH 433 A HOH 296 3 HOH HOH 434 A HOH 297 3 HOH HOH 435 A HOH 298 3 HOH HOH 436 A HOH 299 3 HOH HOH 437 A HOH 300 3 HOH HOH 438 A HOH 301 3 HOH HOH 439 A HOH 302 3 HOH HOH 440 A HOH 303 3 HOH HOH 441 A HOH 304 3 HOH HOH 442 A HOH 305 3 HOH HOH 443 A HOH 306 3 HOH HOH 444 A HOH 307 3 HOH HOH 445 A HOH 308 3 HOH HOH 446 A HOH 309 3 HOH HOH 447 A HOH 310 3 HOH HOH 448 A 0.533 0.457 1.800 1.800 23.170 23.170 PRO 1 n 1 PRO 1 A ASN 2 n 2 ASN 2 A PHE 3 n 3 PHE 3 A SER 4 n 4 SER 4 A GLY 5 n 5 GLY 5 A ASN 6 n 6 ASN 6 A TRP 7 n 7 TRP 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A ILE 10 n 10 ILE 10 A ARG 11 n 11 ARG 11 A SER 12 n 12 SER 12 A GLU 13 n 13 GLU 13 A ASN 14 n 14 ASN 14 A PHE 15 n 15 PHE 15 A GLU 16 n 16 GLU 16 A GLU 17 n 17 GLU 17 A LEU 18 n 18 LEU 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A VAL 21 n 21 VAL 21 A LEU 22 n 22 LEU 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A MET 27 n 27 MET 27 A LEU 28 n 28 LEU 28 A ARG 29 n 29 ARG 29 A LYS 30 n 30 LYS 30 A ILE 31 n 31 ILE 31 A GLU 32 n 32 GLU 32 A VAL 33 n 33 VAL 33 A ALA 34 n 34 ALA 34 A ALA 35 n 35 ALA 35 A ALA 36 n 36 ALA 36 A SER 37 n 37 SER 37 A LYS 38 n 38 LYS 38 A PRO 39 n 39 PRO 39 A ALA 40 n 40 ALA 40 A VAL 41 n 41 VAL 41 A GLU 42 n 42 GLU 42 A ILE 43 n 43 ILE 43 A LYS 44 n 44 LYS 44 A GLN 45 n 45 GLN 45 A GLU 46 n 46 GLU 46 A GLY 47 n 47 GLY 47 A ASP 48 n 48 ASP 48 A THR 49 n 49 THR 49 A PHE 50 n 50 PHE 50 A TYR 51 n 51 TYR 51 A ILE 52 n 52 ILE 52 A LYS 53 n 53 LYS 53 A THR 54 n 54 THR 54 A SER 55 n 55 SER 55 A THR 56 n 56 THR 56 A THR 57 n 57 THR 57 A VAL 58 n 58 VAL 58 A ARG 59 n 59 ARG 59 A THR 60 n 60 THR 60 A THR 61 n 61 THR 61 A GLU 62 n 62 GLU 62 A ILE 63 n 63 ILE 63 A ASN 64 n 64 ASN 64 A PHE 65 n 65 PHE 65 A LYS 66 n 66 LYS 66 A VAL 67 n 67 VAL 67 A GLY 68 n 68 GLY 68 A GLU 69 n 69 GLU 69 A GLU 70 n 70 GLU 70 A PHE 71 n 71 PHE 71 A GLU 72 n 72 GLU 72 A GLU 73 n 73 GLU 73 A GLN 74 n 74 GLN 74 A THR 75 n 75 THR 75 A VAL 76 n 76 VAL 76 A ASP 77 n 77 ASP 77 A GLY 78 n 78 GLY 78 A ARG 79 n 79 ARG 79 A PRO 80 n 80 PRO 80 A CYS 81 n 81 CYS 81 A LYS 82 n 82 LYS 82 A SER 83 n 83 SER 83 A LEU 84 n 84 LEU 84 A VAL 85 n 85 VAL 85 A LYS 86 n 86 LYS 86 A TRP 87 n 87 TRP 87 A GLU 88 n 88 GLU 88 A SER 89 n 89 SER 89 A GLU 90 n 90 GLU 90 A ASN 91 n 91 ASN 91 A LYS 92 n 92 LYS 92 A MET 93 n 93 MET 93 A VAL 94 n 94 VAL 94 A CYS 95 n 95 CYS 95 A GLU 96 n 96 GLU 96 A GLN 97 n 97 GLN 97 A LYS 98 n 98 LYS 98 A LEU 99 n 99 LEU 99 A LEU 100 n 100 LEU 100 A LYS 101 n 101 LYS 101 A GLY 102 n 102 GLY 102 A GLU 103 n 103 GLU 103 A GLY 104 n 104 GLY 104 A PRO 105 n 105 PRO 105 A LYS 106 n 106 LYS 106 A THR 107 n 107 THR 107 A SER 108 n 108 SER 108 A TRP 109 n 109 TRP 109 A THR 110 n 110 THR 110 A LEU 111 n 111 LEU 111 A GLU 112 n 112 GLU 112 A LEU 113 n 113 LEU 113 A THR 114 n 114 THR 114 A ASN 115 n 115 ASN 115 A ASP 116 n 116 ASP 116 A GLY 117 n 117 GLY 117 A GLU 118 n 118 GLU 118 A LEU 119 n 119 LEU 119 A ILE 120 n 120 ILE 120 A LEU 121 n 121 LEU 121 A THR 122 n 122 THR 122 A MET 123 n 123 MET 123 A THR 124 n 124 THR 124 A ALA 125 n 125 ALA 125 A ASP 126 n 126 ASP 126 A ASP 127 n 127 ASP 127 A VAL 128 n 128 VAL 128 A VAL 129 n 129 VAL 129 A CYS 130 n 130 CYS 130 A THR 131 n 131 THR 131 A LYS 132 n 132 LYS 132 A VAL 133 n 133 VAL 133 A TYR 134 n 134 TYR 134 A VAL 135 n 135 VAL 135 A ARG 136 n 136 ARG 136 A GLU 137 n 137 GLU 137 A software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 65 A O PHE 65 A N PHE 50 A N PHE 50 A O LYS 53 A O LYS 53 A N GLU 42 A N GLU 42 A O VAL 41 A O VAL 41 A N TRP 7 A N TRP 7 A N ILE 10 A N ILE 10 A O VAL 133 A O VAL 133 A O LYS 132 A O LYS 132 A N LEU 121 A N LEU 121 A O ILE 120 A O ILE 120 A N GLU 112 A N GLU 112 A O TRP 109 A O TRP 109 A N CYS 95 A N CYS 95 A O LYS 98 A O LYS 98 A N LYS 82 A N LYS 82 A O SER 83 A O SER 83 A N PHE 71 A N PHE 71 1 6.02 0.50 120.30 126.32 A A A NE CZ NH1 ARG ARG ARG 11 11 11 N 1 -6.23 0.50 120.30 114.07 A A A NE CZ NH2 ARG ARG ARG 11 11 11 N 1 13.22 1.60 100.20 113.42 A A A CG SD CE MET MET MET 27 27 27 B B B N 1 -3.34 0.50 120.30 116.96 A A A NE CZ NH2 ARG ARG ARG 29 29 29 N 1 3.05 0.50 120.30 123.35 A A A NE CZ NH1 ARG ARG ARG 136 136 136 A A A N 1 A GLU 73 -150.09 -153.91 1 A ASP 126 52.62 -128.05 20.928 0.1848 0.1137 0.188 0.1240 1.22 10 1417 32033 26990 84.2 Random 1 4.0 MOLECULAR REPLACEMENT PDB entry 2G7B 1.22 10 310 1415 15 0 1090 0.017 0.093 0.013 0.031 0.425 0.259 0.236 1.252 1986 79.82 14.5 1.030 50.000 3CR6 42691 1.0 0.046 0.982 1 9.500 3.800 72.400 0.806 1.03 1.07 0.759 284 0.687 1 1.40 4.80 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP other refinement George Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.005 data collection EMBL data reduction HKL-2000 data scaling HKL-2000 refinement SHELXL Crystal Structure of the R132K:R111L:A32E Mutant of Cellular Retinoic Acid Binding Protein Type II Complexed with C15-aldehyde (a retinal analog) at 1.22 Angstrom resolution. 1 N N 2 N N 3 N N A ASN 14 A ASN 14 HELX_P A LEU 22 A LEU 22 1 1 9 A ASN 25 A ASN 25 HELX_P A SER 37 A SER 37 1 2 13 covale 1.271 none A LYS 132 A NZ LYS 132 1_555 A LSR 138 B CAF LSR 1_555 TRANSPORT PROTEIN CRABPII, retinal, schiff base, protonated schiff base, PSB, C15-aldehyde, retinoic acid, retinoid, Nucleus, Retinol-binding, Transport, Vitamin A, TRANSPORT PROTEIN RABP2_HUMAN UNP 1 2 P29373 PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE 2 138 3CR6 1 137 P29373 A 1 1 137 1 ALA engineered mutation GLU 32 3CR6 A P29373 UNP 33 32 1 ARG engineered mutation LEU 111 3CR6 A P29373 UNP 112 111 1 ARG engineered mutation LYS 132 3CR6 A P29373 UNP 133 132 10 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 60 A THR 60 A LYS 66 A LYS 66 A THR 49 A THR 49 A SER 55 A SER 55 A ALA 40 A ALA 40 A GLU 46 A GLU 46 A GLY 5 A GLY 5 A GLU 13 A GLU 13 A VAL 128 A VAL 128 A ARG 136 A ARG 136 A LEU 119 A LEU 119 A ALA 125 A ALA 125 A THR 107 A THR 107 A LEU 113 A LEU 113 A LYS 92 A LYS 92 A LEU 99 A LEU 99 A PRO 80 A PRO 80 A SER 89 A SER 89 A PHE 71 A PHE 71 A GLN 74 A GLN 74 BINDING SITE FOR RESIDUE LSR A 138 A LSR 138 Software 11 A PHE 15 A PHE 15 11 1_555 A ALA 36 A ALA 36 11 1_555 A PRO 39 A PRO 39 11 1_555 A ILE 52 A ILE 52 11 1_555 A THR 54 A THR 54 11 1_555 A THR 61 A THR 61 11 1_555 A ILE 63 A ILE 63 11 1_555 A LEU 121 A LEU 121 11 1_555 A MET 123 A MET 123 11 1_555 A LYS 132 A LYS 132 11 1_555 A HOH 350 C HOH 11 1_555 4 P 1 21 1