0.013104 0.000000 0.000000 0.000000 0.013104 0.000000 0.000000 0.000000 0.017382 0.00000 0.00000 0.00000 Huang, R.H. Xie, W. Zhou, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 76.312 76.312 57.532 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking O7 P2 -4 173.943 DIPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N P N 89 N O N 90 N O N 91 N O N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N C N 103 N C N 104 N O N 105 N N N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N O N 125 N O N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 N C N 138 N C N 139 N O N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C Y 151 N C Y 152 N N Y 153 N C Y 154 N C Y 155 N N N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N O N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 S C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N N N 215 S C N 216 N C N 217 N O N 218 N C N 219 N C N 220 N C N 221 N C N 222 N N N 223 N O N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N S N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N MG N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing Y 148 N sing Y 149 N doub Y 150 N doub N 151 N sing Y 152 N sing N 153 N sing Y 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing Y 256 N doub Y 257 N sing Y 258 N sing N 259 N sing Y 260 N doub N 261 N sing Y 262 N doub N 263 N sing Y 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N doub Y 330 N sing Y 331 N sing N 332 N sing Y 333 N sing Y 334 N doub N 335 N sing Y 336 N doub N 337 N sing Y 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub N 358 N sing Y 359 N doub N 360 N sing Y 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 367 872 881 10.1016/j.jmb.2007.01.048 17292915 Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel 2007 10.2210/pdb3crq/pdb pdb_00003crq 100 1 CCD 2006-03-15 SINGLE WAVELENGTH M x-ray 1 0.98 1.0 22-BM APS 0.98 SYNCHROTRON APS BEAMLINE 22-BM 35844.117 tRNA delta(2)-isopentenylpyrophosphate transferase 2.5.1.8 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 173.943 DIPHOSPHATE 1 syn non-polymer 18.015 water 56 nat water IPP transferase, Isopentenyl-diphosphate:tRNA isopentenyltransferase, IPTase, IPPT, tRNA DMATase no no MSSLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFR ADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDP QRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALH ARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLKTVS ILA MSSLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFR ADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDP QRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALH ARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLKTVS ILA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas Escherichia Escherichia coli sample miaA 287 Pseudomonas aeruginosa 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pLM-1 1 2.34 47.36 VAPOR DIFFUSION, HANGING DROP 8.5 PEG 6000, pH 8.5, vapor diffusion, hanging drop, temperature 278K 278 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-04-29 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel RCSB Y RCSB 2008-04-07 REL REL MG MAGNESIUM ION DPO DIPHOSPHATE HOH water MG 1 2 MG MG 324 A DPO 1 3 DPO DPO 325 A WAT 1 4 HOH HOH 326 A WAT 2 4 HOH HOH 327 A WAT 3 4 HOH HOH 328 A WAT 4 4 HOH HOH 329 A WAT 5 4 HOH HOH 330 A WAT 6 4 HOH HOH 331 A WAT 7 4 HOH HOH 332 A WAT 8 4 HOH HOH 333 A WAT 9 4 HOH HOH 334 A WAT 10 4 HOH HOH 335 A WAT 11 4 HOH HOH 336 A WAT 12 4 HOH HOH 337 A WAT 13 4 HOH HOH 338 A WAT 14 4 HOH HOH 339 A WAT 15 4 HOH HOH 340 A WAT 16 4 HOH HOH 341 A WAT 17 4 HOH HOH 342 A WAT 18 4 HOH HOH 343 A WAT 19 4 HOH HOH 344 A WAT 20 4 HOH HOH 345 A WAT 21 4 HOH HOH 346 A WAT 22 4 HOH HOH 347 A WAT 23 4 HOH HOH 348 A WAT 24 4 HOH HOH 349 A WAT 25 4 HOH HOH 350 A WAT 26 4 HOH HOH 351 A WAT 27 4 HOH HOH 352 A WAT 28 4 HOH HOH 353 A WAT 29 4 HOH HOH 354 A WAT 30 4 HOH HOH 355 A WAT 31 4 HOH HOH 356 A WAT 32 4 HOH HOH 357 A WAT 33 4 HOH HOH 358 A WAT 34 4 HOH HOH 359 A WAT 35 4 HOH HOH 360 A WAT 36 4 HOH HOH 361 A WAT 37 4 HOH HOH 362 A WAT 38 4 HOH HOH 363 A WAT 39 4 HOH HOH 364 A WAT 40 4 HOH HOH 365 A WAT 41 4 HOH HOH 366 A WAT 42 4 HOH HOH 367 A WAT 43 4 HOH HOH 368 A WAT 44 4 HOH HOH 369 A WAT 45 4 HOH HOH 370 A WAT 46 4 HOH HOH 371 A WAT 47 4 HOH HOH 372 A WAT 48 4 HOH HOH 373 A WAT 49 4 HOH HOH 374 A WAT 50 4 HOH HOH 375 A WAT 51 4 HOH HOH 376 A WAT 52 4 HOH HOH 377 A WAT 53 4 HOH HOH 378 A WAT 54 4 HOH HOH 379 A WAT 55 4 HOH HOH 380 A WAT 56 4 HOH HOH 381 A n 1 1 A n 2 2 A SER 3 n 3 SER 3 A LEU 4 n 4 LEU 4 A PRO 5 n 5 PRO 5 A PRO 6 n 6 PRO 6 A ALA 7 n 7 ALA 7 A ILE 8 n 8 ILE 8 A PHE 9 n 9 PHE 9 A LEU 10 n 10 LEU 10 A MET 11 n 11 MET 11 A GLY 12 n 12 GLY 12 A PRO 13 n 13 PRO 13 A THR 14 n 14 THR 14 A ALA 15 n 15 ALA 15 A ALA 16 n 16 ALA 16 A GLY 17 n 17 GLY 17 A LYS 18 n 18 LYS 18 A THR 19 n 19 THR 19 A ASP 20 n 20 ASP 20 A LEU 21 n 21 LEU 21 A ALA 22 n 22 ALA 22 A MET 23 n 23 MET 23 A ALA 24 n 24 ALA 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A ASP 27 n 27 ASP 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A PRO 30 n 30 PRO 30 A CYS 31 n 31 CYS 31 A GLU 32 n 32 GLU 32 A LEU 33 n 33 LEU 33 A ILE 34 n 34 ILE 34 A SER 35 n 35 SER 35 A VAL 36 n 36 VAL 36 A ASP 37 n 37 ASP 37 A SER 38 n 38 SER 38 A ALA 39 n 39 ALA 39 A LEU 40 n 40 LEU 40 A ILE 41 n 41 ILE 41 A TYR 42 n 42 TYR 42 A ARG 43 n 43 ARG 43 A GLY 44 n 44 GLY 44 A MET 45 n 45 MET 45 A ASP 46 n 46 ASP 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A THR 49 n 49 THR 49 A ALA 50 n 50 ALA 50 A LYS 51 n 51 LYS 51 A PRO 52 n 52 PRO 52 A SER 53 n 53 SER 53 A ARG 54 n 54 ARG 54 A GLU 55 n 55 GLU 55 A LEU 56 n 56 LEU 56 A LEU 57 n 57 LEU 57 A ALA 58 n 58 ALA 58 A ARG 59 n 59 ARG 59 A TYR 60 n 60 TYR 60 A PRO 61 n 61 PRO 61 A HIS 62 n 62 HIS 62 A ARG 63 n 63 ARG 63 A LEU 64 n 64 LEU 64 A ILE 65 n 65 ILE 65 A ASP 66 n 66 ASP 66 A ILE 67 n 67 ILE 67 A ARG 68 n 68 ARG 68 A ASP 69 n 69 ASP 69 A PRO 70 n 70 PRO 70 A ALA 71 n 71 ALA 71 A GLU 72 n 72 GLU 72 A SER 73 n 73 SER 73 A TYR 74 n 74 TYR 74 A SER 75 n 75 SER 75 A ALA 76 n 76 ALA 76 A ALA 77 n 77 ALA 77 A GLU 78 n 78 GLU 78 A PHE 79 n 79 PHE 79 A ARG 80 n 80 ARG 80 A ALA 81 n 81 ALA 81 A ASP 82 n 82 ASP 82 A ALA 83 n 83 ALA 83 A LEU 84 n 84 LEU 84 A ALA 85 n 85 ALA 85 A ALA 86 n 86 ALA 86 A MET 87 n 87 MET 87 A ALA 88 n 88 ALA 88 A LYS 89 n 89 LYS 89 A ALA 90 n 90 ALA 90 A THR 91 n 91 THR 91 A ALA 92 n 92 ALA 92 A ARG 93 n 93 ARG 93 A GLY 94 n 94 GLY 94 A ARG 95 n 95 ARG 95 A ILE 96 n 96 ILE 96 A PRO 97 n 97 PRO 97 A LEU 98 n 98 LEU 98 A LEU 99 n 99 LEU 99 A VAL 100 n 100 VAL 100 A GLY 101 n 101 GLY 101 A GLY 102 n 102 GLY 102 A THR 103 n 103 THR 103 A MET 104 n 104 MET 104 A LEU 105 n 105 LEU 105 A TYR 106 n 106 TYR 106 A TYR 107 n 107 TYR 107 A LYS 108 n 108 LYS 108 A ALA 109 n 109 ALA 109 A LEU 110 n 110 LEU 110 A LEU 111 n 111 LEU 111 A GLU 112 n 112 GLU 112 A GLY 113 n 113 GLY 113 A n 114 114 A n 115 115 A n 116 116 A n 117 117 A n 118 118 A n 119 119 A n 120 120 A n 121 121 A n 122 122 A n 123 123 A n 124 124 A n 125 125 A n 126 126 A n 127 127 A n 128 128 A n 129 129 A n 130 130 A n 131 131 A n 132 132 A n 133 133 A n 134 134 A n 135 135 A n 136 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 142 142 A n 143 143 A n 144 144 A n 145 145 A n 146 146 A n 147 147 A n 148 148 A n 149 149 A n 150 150 A n 151 151 A n 152 152 A n 153 153 A n 154 154 A n 155 155 A n 156 156 A n 157 157 A n 158 158 A n 159 159 A n 160 160 A n 161 161 A n 162 162 A n 163 163 A n 164 164 A n 165 165 A n 166 166 A n 167 167 A n 168 168 A n 169 169 A n 170 170 A n 171 171 A n 172 172 A n 173 173 A n 174 174 A n 175 175 A n 176 176 A n 177 177 A n 178 178 A n 179 179 A n 180 180 A n 181 181 A n 182 182 A n 183 183 A n 184 184 A n 185 185 A n 186 186 A n 187 187 A n 188 188 A n 189 189 A n 190 190 A n 191 191 A n 192 192 A n 193 193 A n 194 194 A n 195 195 A n 196 196 A n 197 197 A n 198 198 A LEU 199 n 199 LEU 199 A PRO 200 n 200 PRO 200 A TYR 201 n 201 TYR 201 A THR 202 n 202 THR 202 A VAL 203 n 203 VAL 203 A ALA 204 n 204 ALA 204 A GLN 205 n 205 GLN 205 A LEU 206 n 206 LEU 206 A ALA 207 n 207 ALA 207 A ILE 208 n 208 ILE 208 A ALA 209 n 209 ALA 209 A PRO 210 n 210 PRO 210 A GLU 211 n 211 GLU 211 A GLN 212 n 212 GLN 212 A ARG 213 n 213 ARG 213 A GLN 214 n 214 GLN 214 A VAL 215 n 215 VAL 215 A LEU 216 n 216 LEU 216 A HIS 217 n 217 HIS 217 A ALA 218 n 218 ALA 218 A ARG 219 n 219 ARG 219 A ILE 220 n 220 ILE 220 A ALA 221 n 221 ALA 221 A GLN 222 n 222 GLN 222 A ARG 223 n 223 ARG 223 A PHE 224 n 224 PHE 224 A ARG 225 n 225 ARG 225 A GLN 226 n 226 GLN 226 A MET 227 n 227 MET 227 A LEU 228 n 228 LEU 228 A GLU 229 n 229 GLU 229 A GLN 230 n 230 GLN 230 A GLY 231 n 231 GLY 231 A PHE 232 n 232 PHE 232 A ILE 233 n 233 ILE 233 A ALA 234 n 234 ALA 234 A GLU 235 n 235 GLU 235 A VAL 236 n 236 VAL 236 A GLU 237 n 237 GLU 237 A ALA 238 n 238 ALA 238 A LEU 239 n 239 LEU 239 A HIS 240 n 240 HIS 240 A ALA 241 n 241 ALA 241 A ARG 242 n 242 ARG 242 A SER 243 n 243 SER 243 A ASP 244 n 244 ASP 244 A LEU 245 n 245 LEU 245 A HIS 246 n 246 HIS 246 A ALA 247 n 247 ALA 247 A GLY 248 n 248 GLY 248 A LEU 249 n 249 LEU 249 A PRO 250 n 250 PRO 250 A SER 251 n 251 SER 251 A ILE 252 n 252 ILE 252 A ARG 253 n 253 ARG 253 A ALA 254 n 254 ALA 254 A VAL 255 n 255 VAL 255 A GLY 256 n 256 GLY 256 A TYR 257 n 257 TYR 257 A ARG 258 n 258 ARG 258 A GLN 259 n 259 GLN 259 A VAL 260 n 260 VAL 260 A TRP 261 n 261 TRP 261 A ASP 262 n 262 ASP 262 A TYR 263 n 263 TYR 263 A LEU 264 n 264 LEU 264 A ASP 265 n 265 ASP 265 A GLY 266 n 266 GLY 266 A LYS 267 n 267 LYS 267 A LEU 268 n 268 LEU 268 A SER 269 n 269 SER 269 A TYR 270 n 270 TYR 270 A ALA 271 n 271 ALA 271 A GLU 272 n 272 GLU 272 A MET 273 n 273 MET 273 A THR 274 n 274 THR 274 A GLU 275 n 275 GLU 275 A ARG 276 n 276 ARG 276 A GLY 277 n 277 GLY 277 A ILE 278 n 278 ILE 278 A ILE 279 n 279 ILE 279 A ALA 280 n 280 ALA 280 A THR 281 n 281 THR 281 A ARG 282 n 282 ARG 282 A GLN 283 n 283 GLN 283 A LEU 284 n 284 LEU 284 A ALA 285 n 285 ALA 285 A LYS 286 n 286 LYS 286 A ARG 287 n 287 ARG 287 A GLN 288 n 288 GLN 288 A PHE 289 n 289 PHE 289 A THR 290 n 290 THR 290 A TRP 291 n 291 TRP 291 A LEU 292 n 292 LEU 292 A ARG 293 n 293 ARG 293 A SER 294 n 294 SER 294 A TRP 295 n 295 TRP 295 A SER 296 n 296 SER 296 A HIS 297 n 297 HIS 297 A LEU 298 n 298 LEU 298 A HIS 299 n 299 HIS 299 A TRP 300 n 300 TRP 300 A MET 301 n 301 MET 301 A ASP 302 n 302 ASP 302 A SER 303 n 303 SER 303 A LEU 304 n 304 LEU 304 A ALA 305 n 305 ALA 305 A GLY 306 n 306 GLY 306 A ASP 307 n 307 ASP 307 A ASN 308 n 308 ASN 308 A LEU 309 n 309 LEU 309 A PRO 310 n 310 PRO 310 A ARG 311 n 311 ARG 311 A ALA 312 n 312 ALA 312 A LEU 313 n 313 LEU 313 A ARG 314 n 314 ARG 314 A TYR 315 n 315 TYR 315 A LEU 316 n 316 LEU 316 A LYS 317 n 317 LYS 317 A THR 318 n 318 THR 318 A VAL 319 n 319 VAL 319 A SER 320 n 320 SER 320 A ILE 321 n 321 ILE 321 A LEU 322 n 322 LEU 322 A ALA 323 n 323 ALA 323 A author_and_software_defined_assembly PISA 1 monomeric A THR 19 A OG1 THR 19 1_555 A MG 324 B MG MG 1_555 A DPO 325 C O7 DPO 1_555 95.6 A THR 19 A OG1 THR 19 1_555 A MG 324 B MG MG 1_555 A DPO 325 C O3 DPO 1_555 178.7 A DPO 325 C O7 DPO 1_555 A MG 324 B MG MG 1_555 A DPO 325 C O3 DPO 1_555 85.0 A THR 19 A OG1 THR 19 1_555 A MG 324 B MG MG 1_555 A HOH 342 D O HOH 1_555 97.6 A DPO 325 C O7 DPO 1_555 A MG 324 B MG MG 1_555 A HOH 342 D O HOH 1_555 84.1 A DPO 325 C O3 DPO 1_555 A MG 324 B MG MG 1_555 A HOH 342 D O HOH 1_555 81.4 A THR 19 A OG1 THR 19 1_555 A MG 324 B MG MG 1_555 A HOH 346 D O HOH 1_555 93.9 A DPO 325 C O7 DPO 1_555 A MG 324 B MG MG 1_555 A HOH 346 D O HOH 1_555 97.5 A DPO 325 C O3 DPO 1_555 A MG 324 B MG MG 1_555 A HOH 346 D O HOH 1_555 87.2 A HOH 342 D O HOH 1_555 A MG 324 B MG MG 1_555 A HOH 346 D O HOH 1_555 168.2 A THR 19 A OG1 THR 19 1_555 A MG 324 B MG MG 1_555 A HOH 376 D O HOH 1_555 91.9 A DPO 325 C O7 DPO 1_555 A MG 324 B MG MG 1_555 A HOH 376 D O HOH 1_555 167.7 A DPO 325 C O3 DPO 1_555 A MG 324 B MG MG 1_555 A HOH 376 D O HOH 1_555 87.2 A HOH 342 D O HOH 1_555 A MG 324 B MG MG 1_555 A HOH 376 D O HOH 1_555 85.3 A HOH 346 D O HOH 1_555 A MG 324 B MG MG 1_555 A HOH 376 D O HOH 1_555 91.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 63 A O ARG 63 A N SER 35 A N SER 35 A N ILE 34 A N ILE 34 A O LEU 98 A O LEU 98 A O PRO 97 A O PRO 97 A N ILE 8 A N ILE 8 A N PHE 9 A N PHE 9 A O LEU 206 A O LEU 206 A N GLN 205 A N GLN 205 A O HIS 299 A O HIS 299 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LEU 114 A LEU 114 1 Y 1 A ALA 115 A ALA 115 1 Y 1 A ASP 116 A ASP 116 1 Y 1 A MET 117 A MET 117 1 Y 1 A PRO 118 A PRO 118 1 Y 1 A GLY 119 A GLY 119 1 Y 1 A ALA 120 A ALA 120 1 Y 1 A ASP 121 A ASP 121 1 Y 1 A PRO 122 A PRO 122 1 Y 1 A GLU 123 A GLU 123 1 Y 1 A VAL 124 A VAL 124 1 Y 1 A ARG 125 A ARG 125 1 Y 1 A ALA 126 A ALA 126 1 Y 1 A ALA 127 A ALA 127 1 Y 1 A ILE 128 A ILE 128 1 Y 1 A GLU 129 A GLU 129 1 Y 1 A ALA 130 A ALA 130 1 Y 1 A GLU 131 A GLU 131 1 Y 1 A ALA 132 A ALA 132 1 Y 1 A GLN 133 A GLN 133 1 Y 1 A ALA 134 A ALA 134 1 Y 1 A GLU 135 A GLU 135 1 Y 1 A GLY 136 A GLY 136 1 Y 1 A TRP 137 A TRP 137 1 Y 1 A GLU 138 A GLU 138 1 Y 1 A ALA 139 A ALA 139 1 Y 1 A LEU 140 A LEU 140 1 Y 1 A HIS 141 A HIS 141 1 Y 1 A ARG 142 A ARG 142 1 Y 1 A GLN 143 A GLN 143 1 Y 1 A LEU 144 A LEU 144 1 Y 1 A ALA 145 A ALA 145 1 Y 1 A GLU 146 A GLU 146 1 Y 1 A VAL 147 A VAL 147 1 Y 1 A ASP 148 A ASP 148 1 Y 1 A PRO 149 A PRO 149 1 Y 1 A GLU 150 A GLU 150 1 Y 1 A SER 151 A SER 151 1 Y 1 A ALA 152 A ALA 152 1 Y 1 A ALA 153 A ALA 153 1 Y 1 A ARG 154 A ARG 154 1 Y 1 A ILE 155 A ILE 155 1 Y 1 A HIS 156 A HIS 156 1 Y 1 A PRO 157 A PRO 157 1 Y 1 A ASN 158 A ASN 158 1 Y 1 A ASP 159 A ASP 159 1 Y 1 A PRO 160 A PRO 160 1 Y 1 A GLN 161 A GLN 161 1 Y 1 A ARG 162 A ARG 162 1 Y 1 A LEU 163 A LEU 163 1 Y 1 A MET 164 A MET 164 1 Y 1 A ARG 165 A ARG 165 1 Y 1 A ALA 166 A ALA 166 1 Y 1 A LEU 167 A LEU 167 1 Y 1 A GLU 168 A GLU 168 1 Y 1 A VAL 169 A VAL 169 1 Y 1 A TYR 170 A TYR 170 1 Y 1 A ARG 171 A ARG 171 1 Y 1 A LEU 172 A LEU 172 1 Y 1 A GLY 173 A GLY 173 1 Y 1 A GLY 174 A GLY 174 1 Y 1 A VAL 175 A VAL 175 1 Y 1 A SER 176 A SER 176 1 Y 1 A MET 177 A MET 177 1 Y 1 A SER 178 A SER 178 1 Y 1 A ASP 179 A ASP 179 1 Y 1 A LEU 180 A LEU 180 1 Y 1 A ARG 181 A ARG 181 1 Y 1 A ARG 182 A ARG 182 1 Y 1 A ARG 183 A ARG 183 1 Y 1 A GLN 184 A GLN 184 1 Y 1 A SER 185 A SER 185 1 Y 1 A ALA 186 A ALA 186 1 Y 1 A GLU 187 A GLU 187 1 Y 1 A LYS 188 A LYS 188 1 Y 1 A ALA 189 A ALA 189 1 Y 1 A ASP 190 A ASP 190 1 Y 1 A PHE 191 A PHE 191 1 Y 1 A ASP 192 A ASP 192 1 Y 1 A ALA 193 A ALA 193 1 Y 1 A SER 194 A SER 194 1 Y 1 A GLY 195 A GLY 195 1 Y 1 A ARG 196 A ARG 196 1 Y 1 A ASN 197 A ASN 197 1 Y 1 A GLN 198 A GLN 198 1 Y 1 A GLU 112 -128.80 -89.08 1 A SER 320 65.42 63.68 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:water_rep.param CNS_TOPPAR:ion.param pp.par tris.par 42.950 6.396 0.000 0.000 6.396 0.000 -12.792 0.250 0.220 2.200 50.000 1242 15716 7.300 92.700 0.843 1 1.00 45.061 2.200 50.000 56 1911 10 0 1845 0.006 1.150 1.370 1.500 2.156 2.000 2.144 2.000 3.200 2.500 2.2 50.0 3CRQ 16957 16614 1 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.005 Structure of tRNA Dimethylallyltransferase: RNA Modification through a Channel 1 N N 2 N N 3 N N 4 N N A GLY 17 A GLY 17 HELX_P A ASP 27 A ASP 27 1 1 11 A SER 53 A SER 53 HELX_P A TYR 60 A TYR 60 1 2 8 A SER 75 A SER 75 HELX_P A ARG 93 A ARG 93 1 3 19 A THR 103 A THR 103 HELX_P A GLU 112 A GLU 112 1 4 10 A GLN 212 A GLN 212 HELX_P A GLY 231 A GLY 231 1 5 20 A GLY 231 A GLY 231 HELX_P A ALA 241 A ALA 241 1 6 11 A PRO 250 A PRO 250 HELX_P A ALA 254 A ALA 254 5 7 5 A GLY 256 A GLY 256 HELX_P A ASP 265 A ASP 265 1 8 10 A SER 269 A SER 269 HELX_P A SER 294 A SER 294 1 9 26 A ASP 307 A ASP 307 HELX_P A VAL 319 A VAL 319 1 10 13 metalc 2.045 A THR 19 A OG1 THR 19 1_555 A MG 324 B MG MG 1_555 metalc 1.877 A MG 324 B MG MG 1_555 A DPO 325 C O7 DPO 1_555 metalc 1.989 A MG 324 B MG MG 1_555 A DPO 325 C O3 DPO 1_555 metalc 2.145 A MG 324 B MG MG 1_555 A HOH 342 D O HOH 1_555 metalc 2.091 A MG 324 B MG MG 1_555 A HOH 346 D O HOH 1_555 metalc 2.248 A MG 324 B MG MG 1_555 A HOH 376 D O HOH 1_555 TRANSFERASE Transferase, ATP-binding, Nucleotide-binding, Nucleotidyltransferase, tRNA processing MIAA_PSEAE UNP 1 1 Q9HUL9 MSSLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFR ADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDP QRLMRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALH ARSDLHAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALKYLKTVS ILA 1 323 3CRQ 1 323 Q9HUL9 A 1 1 323 1 LYS conflict ARG 314 3CRQ A Q9HUL9 UNP 314 314 6 parallel parallel parallel parallel parallel A HIS 62 A HIS 62 A ARG 63 A ARG 63 A CYS 31 A CYS 31 A SER 35 A SER 35 A ILE 96 A ILE 96 A VAL 100 A VAL 100 A PRO 6 A PRO 6 A MET 11 A MET 11 A THR 202 A THR 202 A ALA 209 A ALA 209 A HIS 299 A HIS 299 A ASP 302 A ASP 302 BINDING SITE FOR RESIDUE MG A 324 A MG 324 Software 4 BINDING SITE FOR RESIDUE DPO A 325 A DPO 325 Software 14 A THR 19 A THR 19 4 1_555 A HOH 342 D HOH 4 1_555 A HOH 346 D HOH 4 1_555 A HOH 376 D HOH 4 1_555 A THR 14 A THR 14 14 1_555 A ALA 15 A ALA 15 14 1_555 A ALA 16 A ALA 16 14 1_555 A GLY 17 A GLY 17 14 1_555 A LYS 18 A LYS 18 14 1_555 A THR 19 A THR 19 14 1_555 A ARG 223 A ARG 223 14 1_555 A HOH 332 D HOH 14 1_555 A HOH 341 D HOH 14 1_555 A HOH 342 D HOH 14 1_555 A HOH 346 D HOH 14 1_555 A HOH 362 D HOH 14 1_555 A HOH 368 D HOH 14 1_555 A HOH 376 D HOH 14 1_555 76 P 41