0.032388
0.000000
0.000000
0.000000
0.014420
0.000000
0.000000
0.000000
0.014139
0.00000
0.00000
0.00000
Xiang, Y.
Rossmann, M.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
30.876
69.350
70.728
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
S
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
S
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
R
C
N
230
R
C
N
231
R
C
N
232
S
C
N
233
R
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
O
N
240
N
O
N
241
N
O
N
242
N
O
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
O
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
R
C
N
318
N
O
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
N
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
105
9552
9557
10.1073/pnas.0803787105
18606992
Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
2008
10.2210/pdb3csz/pdb
pdb_00003csz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
2007-03-04
RIGAKU RAXIS IV
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
18440.746
Morphogenesis protein 1
1
man
polymer
627.594
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
109
nat
water
Late protein GP13
triacetyl-beta-chitotriose
no
no
MVYVSNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPGLWQNLDEGNTSLGFGLVQWTPASNYINWA
NSQGLPYKNMDSELKRIIWEVNNNAQWINLRDMTFKEYIKSTKTPRELAMIFLASYERPANPNQPERGDQAEYWYKNLS
MVYVSNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPGLWQNLDEGNTSLGFGLVQWTPASNYINWA
NSQGLPYKNMDSELKRIIWEVNNNAQWINLRDMTFKEYIKSTKTPRELAMIFLASYERPANPNQPERGDQAEYWYKNLS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
13
Bacteriophage phi-29
Escherichia coli
BL21DE3 CODON PLUS RP
PLASMID
PTYB1
2.05
40.09
VAPOR DIFFUSION, SITTING DROP
8.0
20% PEG4000, 100mM Tris-HCl, 10% glyerol, 1.5 mg/ml (N-acetylglucosamine)3 (NAG)3, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
atom_site
chem_comp
entity
entity_name_com
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_molecule_features
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Version format compliance
Refinement description
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
2008-07-01
1
1
2011-07-13
1
2
2017-10-25
2
0
2020-07-29
2
1
2024-02-21
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
B
NAG
201
n
B
NAG
1
B
NAG
202
n
B
NAG
2
B
NAG
203
n
B
NAG
3
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2008-04-10
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,3,2/[a2122h-1b_1-5_2*NCC/3=O]/1-1-1/a4-b1_b4-c1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
NAG
NAG
3
2
2
O1
HO4
sing
n
n
n
HOH
water
AUTORS STATE THAT RESIDUE 89 SHOULD BE ASN ACCORDING TO THEIR SEQUENCING RESULTS OF THE GENE.
Inhibitor
oligosaccharide
triacetyl-beta-chitotriose
Oligosaccharide
HOH
1
3
HOH
HOH
204
A
HOH
2
3
HOH
HOH
205
A
HOH
3
3
HOH
HOH
206
A
HOH
4
3
HOH
HOH
207
A
HOH
5
3
HOH
HOH
208
A
HOH
6
3
HOH
HOH
209
A
HOH
7
3
HOH
HOH
210
A
HOH
8
3
HOH
HOH
211
A
HOH
9
3
HOH
HOH
212
A
HOH
10
3
HOH
HOH
213
A
HOH
11
3
HOH
HOH
214
A
HOH
12
3
HOH
HOH
215
A
HOH
13
3
HOH
HOH
216
A
HOH
14
3
HOH
HOH
217
A
HOH
15
3
HOH
HOH
218
A
HOH
16
3
HOH
HOH
219
A
HOH
17
3
HOH
HOH
220
A
HOH
18
3
HOH
HOH
221
A
HOH
19
3
HOH
HOH
222
A
HOH
20
3
HOH
HOH
223
A
HOH
21
3
HOH
HOH
224
A
HOH
22
3
HOH
HOH
225
A
HOH
23
3
HOH
HOH
226
A
HOH
24
3
HOH
HOH
227
A
HOH
25
3
HOH
HOH
228
A
HOH
26
3
HOH
HOH
229
A
HOH
27
3
HOH
HOH
230
A
HOH
28
3
HOH
HOH
231
A
HOH
29
3
HOH
HOH
232
A
HOH
30
3
HOH
HOH
233
A
HOH
31
3
HOH
HOH
234
A
HOH
32
3
HOH
HOH
235
A
HOH
33
3
HOH
HOH
236
A
HOH
34
3
HOH
HOH
237
A
HOH
35
3
HOH
HOH
238
A
HOH
36
3
HOH
HOH
239
A
HOH
37
3
HOH
HOH
240
A
HOH
38
3
HOH
HOH
241
A
HOH
39
3
HOH
HOH
242
A
HOH
40
3
HOH
HOH
243
A
HOH
41
3
HOH
HOH
244
A
HOH
42
3
HOH
HOH
245
A
HOH
43
3
HOH
HOH
246
A
HOH
44
3
HOH
HOH
247
A
HOH
45
3
HOH
HOH
248
A
HOH
46
3
HOH
HOH
249
A
HOH
47
3
HOH
HOH
250
A
HOH
48
3
HOH
HOH
251
A
HOH
49
3
HOH
HOH
252
A
HOH
50
3
HOH
HOH
253
A
HOH
52
3
HOH
HOH
254
A
HOH
53
3
HOH
HOH
255
A
HOH
54
3
HOH
HOH
256
A
HOH
55
3
HOH
HOH
257
A
HOH
56
3
HOH
HOH
258
A
HOH
57
3
HOH
HOH
259
A
HOH
58
3
HOH
HOH
260
A
HOH
59
3
HOH
HOH
261
A
HOH
61
3
HOH
HOH
262
A
HOH
62
3
HOH
HOH
263
A
HOH
63
3
HOH
HOH
264
A
HOH
64
3
HOH
HOH
265
A
HOH
65
3
HOH
HOH
266
A
HOH
66
3
HOH
HOH
267
A
HOH
67
3
HOH
HOH
268
A
HOH
68
3
HOH
HOH
269
A
HOH
69
3
HOH
HOH
270
A
HOH
70
3
HOH
HOH
271
A
HOH
71
3
HOH
HOH
272
A
HOH
72
3
HOH
HOH
273
A
HOH
73
3
HOH
HOH
274
A
HOH
74
3
HOH
HOH
275
A
HOH
75
3
HOH
HOH
276
A
HOH
76
3
HOH
HOH
277
A
HOH
77
3
HOH
HOH
278
A
HOH
78
3
HOH
HOH
279
A
HOH
79
3
HOH
HOH
280
A
HOH
80
3
HOH
HOH
281
A
HOH
81
3
HOH
HOH
282
A
HOH
82
3
HOH
HOH
283
A
HOH
83
3
HOH
HOH
284
A
HOH
84
3
HOH
HOH
285
A
HOH
85
3
HOH
HOH
286
A
HOH
86
3
HOH
HOH
287
A
HOH
87
3
HOH
HOH
288
A
HOH
88
3
HOH
HOH
289
A
HOH
89
3
HOH
HOH
290
A
HOH
90
3
HOH
HOH
291
A
HOH
91
3
HOH
HOH
292
A
HOH
92
3
HOH
HOH
293
A
HOH
95
3
HOH
HOH
294
A
HOH
96
3
HOH
HOH
295
A
HOH
97
3
HOH
HOH
296
A
HOH
98
3
HOH
HOH
297
A
HOH
99
3
HOH
HOH
298
A
HOH
100
3
HOH
HOH
299
A
HOH
101
3
HOH
HOH
300
A
HOH
102
3
HOH
HOH
301
A
HOH
103
3
HOH
HOH
302
A
HOH
104
3
HOH
HOH
303
A
HOH
105
3
HOH
HOH
304
A
HOH
106
3
HOH
HOH
305
A
HOH
107
3
HOH
HOH
306
A
HOH
108
3
HOH
HOH
307
A
HOH
110
3
HOH
HOH
308
A
HOH
111
3
HOH
HOH
309
A
HOH
112
3
HOH
HOH
310
A
HOH
113
3
HOH
HOH
311
A
HOH
114
3
HOH
HOH
312
A
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
TYR
3
n
3
TYR
3
A
VAL
4
n
4
VAL
4
A
SER
5
n
5
SER
5
A
ASN
6
n
6
ASN
6
A
LYS
7
n
7
LYS
7
A
TYR
8
n
8
TYR
8
A
LEU
9
n
9
LEU
9
A
THR
10
n
10
THR
10
A
MET
11
n
11
MET
11
A
SER
12
n
12
SER
12
A
GLU
13
n
13
GLU
13
A
MET
14
n
14
MET
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
ASN
17
n
17
ASN
17
A
ALA
18
n
18
ALA
18
A
GLN
19
n
19
GLN
19
A
TYR
20
n
20
TYR
20
A
ILE
21
n
21
ILE
21
A
LEU
22
n
22
LEU
22
A
ASN
23
n
23
ASN
23
A
TYR
24
n
24
TYR
24
A
LEU
25
n
25
LEU
25
A
SER
26
n
26
SER
26
A
SER
27
n
27
SER
27
A
ASN
28
n
28
ASN
28
A
GLY
29
n
29
GLY
29
A
TRP
30
n
30
TRP
30
A
THR
31
n
31
THR
31
A
LYS
32
n
32
LYS
32
A
GLN
33
n
33
GLN
33
A
ALA
34
n
34
ALA
34
A
ILE
35
n
35
ILE
35
A
CYS
36
n
36
CYS
36
A
GLY
37
n
37
GLY
37
A
MET
38
n
38
MET
38
A
LEU
39
n
39
LEU
39
A
GLY
40
n
40
GLY
40
A
ASN
41
n
41
ASN
41
A
MET
42
n
42
MET
42
A
GLN
43
n
43
GLN
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
SER
46
n
46
SER
46
A
THR
47
n
47
THR
47
A
ILE
48
n
48
ILE
48
A
ASN
49
n
49
ASN
49
A
PRO
50
n
50
PRO
50
A
GLY
51
n
51
GLY
51
A
LEU
52
n
52
LEU
52
A
TRP
53
n
53
TRP
53
A
GLN
54
n
54
GLN
54
A
ASN
55
n
55
ASN
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
GLU
58
n
58
GLU
58
A
GLY
59
n
59
GLY
59
A
ASN
60
n
60
ASN
60
A
THR
61
n
61
THR
61
A
SER
62
n
62
SER
62
A
LEU
63
n
63
LEU
63
A
GLY
64
n
64
GLY
64
A
PHE
65
n
65
PHE
65
A
GLY
66
n
66
GLY
66
A
LEU
67
n
67
LEU
67
A
VAL
68
n
68
VAL
68
A
GLN
69
n
69
GLN
69
A
TRP
70
n
70
TRP
70
A
THR
71
n
71
THR
71
A
PRO
72
n
72
PRO
72
A
ALA
73
n
73
ALA
73
A
SER
74
n
74
SER
74
A
ASN
75
n
75
ASN
75
A
TYR
76
n
76
TYR
76
A
ILE
77
n
77
ILE
77
A
ASN
78
n
78
ASN
78
A
TRP
79
n
79
TRP
79
A
ALA
80
n
80
ALA
80
A
ASN
81
n
81
ASN
81
A
SER
82
n
82
SER
82
A
GLN
83
n
83
GLN
83
A
GLY
84
n
84
GLY
84
A
LEU
85
n
85
LEU
85
A
PRO
86
n
86
PRO
86
A
TYR
87
n
87
TYR
87
A
LYS
88
n
88
LYS
88
A
ASN
89
n
89
ASN
89
A
MET
90
n
90
MET
90
A
ASP
91
n
91
ASP
91
A
SER
92
n
92
SER
92
A
GLU
93
n
93
GLU
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
ARG
96
n
96
ARG
96
A
ILE
97
n
97
ILE
97
A
ILE
98
n
98
ILE
98
A
TRP
99
n
99
TRP
99
A
GLU
100
n
100
GLU
100
A
VAL
101
n
101
VAL
101
A
ASN
102
n
102
ASN
102
A
ASN
103
n
103
ASN
103
A
ASN
104
n
104
ASN
104
A
ALA
105
n
105
ALA
105
A
GLN
106
n
106
GLN
106
A
TRP
107
n
107
TRP
107
A
ILE
108
n
108
ILE
108
A
ASN
109
n
109
ASN
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
ASP
112
n
112
ASP
112
A
MET
113
n
113
MET
113
A
THR
114
n
114
THR
114
A
PHE
115
n
115
PHE
115
A
LYS
116
n
116
LYS
116
A
GLU
117
n
117
GLU
117
A
TYR
118
n
118
TYR
118
A
ILE
119
n
119
ILE
119
A
LYS
120
n
120
LYS
120
A
SER
121
n
121
SER
121
A
THR
122
n
122
THR
122
A
LYS
123
n
123
LYS
123
A
THR
124
n
124
THR
124
A
PRO
125
n
125
PRO
125
A
ARG
126
n
126
ARG
126
A
GLU
127
n
127
GLU
127
A
LEU
128
n
128
LEU
128
A
ALA
129
n
129
ALA
129
A
MET
130
n
130
MET
130
A
ILE
131
n
131
ILE
131
A
PHE
132
n
132
PHE
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
SER
135
n
135
SER
135
A
TYR
136
n
136
TYR
136
A
GLU
137
n
137
GLU
137
A
ARG
138
n
138
ARG
138
A
PRO
139
n
139
PRO
139
A
ALA
140
n
140
ALA
140
A
ASN
141
n
141
ASN
141
A
PRO
142
n
142
PRO
142
A
ASN
143
n
143
ASN
143
A
GLN
144
n
144
GLN
144
A
PRO
145
n
145
PRO
145
A
GLU
146
n
146
GLU
146
A
ARG
147
n
147
ARG
147
A
GLY
148
n
148
GLY
148
A
ASP
149
n
149
ASP
149
A
GLN
150
n
150
GLN
150
A
ALA
151
n
151
ALA
151
A
GLU
152
n
152
GLU
152
A
TYR
153
n
153
TYR
153
A
TRP
154
n
154
TRP
154
A
TYR
155
n
155
TYR
155
A
LYS
156
n
156
LYS
156
A
ASN
157
n
157
ASN
157
A
LEU
158
n
158
LEU
158
A
SER
159
n
159
SER
159
A
1.5806
0.6208
0.2134
3.2577
0.0175
1.0501
-0.0376
0.0059
0.0750
0.3210
0.0752
0.0246
-0.0610
-0.0035
-0.0376
-0.1391
0.0206
-0.0014
-0.1326
0.0084
-0.1538
refined
1.5237
24.5426
18.4439
X-RAY DIFFRACTION
A
1
A
1
A
159
A
159
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASN
6
-101.10
62.82
1
A
GLN
106
75.25
-47.35
24.877
0.22
0.00
0.00
-0.71
0.00
0.49
0.954
0.928
0.22522
0.18298
0.18715
1.80
21.97
1434
12912
10.0
98.02
5.626
0.090
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
FOURIER SYNTHESIS
0.155
0.142
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.80
21.97
109
1448
43
0
1296
0.014
0.022
1378
1.389
1.970
1877
5.859
5.000
160
34.764
25.522
67
12.970
15.000
230
17.733
15.000
5
0.089
0.200
202
0.005
0.020
1044
0.205
0.200
695
0.311
0.200
961
0.146
0.200
107
0.238
0.200
22
0.239
0.200
7
0.719
1.500
821
1.021
2.000
1284
1.883
3.000
666
2.672
4.500
592
0.351
0.236
1.846
110
893
20
95.98
1.8
22
3CSZ
14346
0.053
0.053
1
32.1
98
0.342
1.8
1.86
6.3
0.342
1
96
refinement
REFMAC
5.2.0019
data collection
CrystalClear
data reduction
HKL-2000
data scaling
HKL-2000
Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
1
N
N
2
N
N
3
N
N
A
THR
10
A
THR
10
HELX_P
A
SER
27
A
SER
27
1
1
18
A
THR
31
A
THR
31
HELX_P
A
THR
47
A
THR
47
1
2
17
A
TRP
53
A
TRP
53
HELX_P
A
ASP
57
A
ASP
57
5
3
5
A
ALA
73
A
ALA
73
HELX_P
A
GLY
84
A
GLY
84
1
4
12
A
ASN
89
A
ASN
89
HELX_P
A
ASN
104
A
ASN
104
1
5
16
A
THR
114
A
THR
114
HELX_P
A
LYS
120
A
LYS
120
1
6
7
A
THR
124
A
THR
124
HELX_P
A
TYR
136
A
TYR
136
1
7
13
A
PRO
145
A
PRO
145
HELX_P
A
LEU
158
A
LEU
158
1
8
14
covale
1.438
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.446
both
B
NAG
2
B
O4
NAG
1_555
B
NAG
3
B
C1
NAG
1_555
HYDROLASE
Cell wall, phi29, hydrolase, infection, Late protein
A
THR
71
A
THR
71
1
A
PRO
72
A
PRO
72
2.21
VG13_BPPH2
UNP
1
1
P15132
MVYVSNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPGLWQNLDEGNTSLGFGLVQWTPASNYINWA
NSQGLPYKDMDSELKRIIWEVNNNAQWINLRDMTFKEYIKSTKTPRELAMIFLASYERPANPNQPERGDQAEYWYKNLS
1
159
3CSZ
1
159
P15132
A
1
1
159
1
ASP
SEE REMARK 999
ASN
89
3CSZ
A
P15132
UNP
89
89
19
P 21 21 21