0.029132 0.000000 0.008477 0.000000 0.011489 0.000000 0.000000 0.000000 0.019763 0.000000 0.000000 0.000000 Malashkevich, V.N. Toro, R. Wasserman, S.R. Meyer, A. 0000-0002-0254-4955 Sauder, J.M. 0000-0002-2487-9713 Burley, S.K. Almo, S.C. New York SGX Research Center for Structural Genomics (NYSGXRC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 106.220 90.000 34.326 87.038 52.697 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To be Published 0353 Crystal structure of a two component transcriptional regulator AraC from Clostridium phytofermentans ISDg. 0000-0002-2487-9713 10.2210/pdb3cu5/pdb pdb_00003cu5 100 1 CCD 2008-04-04 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.97980 1.0 7.70 55666 0.101 1.71 2.500 50.000 16975 85.80 3.30 31-ID APS 0.97980 SYNCHROTRON APS BEAMLINE 31-ID 16160.503 Two component transcriptional regulator, AraC family Residues 2-131 2 man polymer 18.015 water 95 nat water no no MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSV IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQHQAQQDSEGHHHHHH MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSV IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQHQAQQDSEGHHHHHH A,B NYSGXRC-11009q polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Clostridium Clostridium phytofermentans ISDg / DSM 18823 Escherichia sample 700394 Cphy_0579 357809 Clostridium phytofermentans ISDg 562 Escherichia coli BL21(DE3)CODON+RIL Plasmid BC-pSGX3(BC) 1 2.34 47.40 The structure factor file contains Friedel pairs VAPOR DIFFUSION, SITTING DROP 7.0 1.8 M Tri-ammonium citrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K 294 New York SGX Research Center for Structural Genomics NYSGXRC PSI, Protein Structure Initiative software audit_author audit_author citation_author struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 repository Initial release Advisory Version format compliance Refinement description Data collection Structure summary Database references Structure summary Data collection Database references 1 0 2008-05-06 1 1 2011-07-13 1 2 2017-10-25 1 3 2018-11-14 1 4 2021-02-03 1 5 2024-02-21 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _audit_author.identifier_ORCID _audit_author.identifier_ORCID _citation_author.identifier_ORCID _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession Y RCSB Y RCSB 2008-04-15 REL REL 0.061 2.512 99.30 3.80 0.078 2.680 99.90 3.90 0.101 2.202 100.00 3.90 0.122 1.614 100.00 3.90 0.176 1.132 100.00 3.70 0.218 0.947 99.50 3.30 0.262 0.801 92.80 2.70 0.322 0.841 75.70 2.20 0.353 0.747 55.30 1.70 0.407 0.873 36.40 1.40 HOH water HOH 43 2 HOH HOH 142 A HOH 45 2 HOH HOH 143 A HOH 46 2 HOH HOH 144 A HOH 49 2 HOH HOH 145 A HOH 50 2 HOH HOH 146 A HOH 56 2 HOH HOH 147 A HOH 62 2 HOH HOH 148 A HOH 63 2 HOH HOH 149 A HOH 67 2 HOH HOH 150 A HOH 69 2 HOH HOH 151 A HOH 71 2 HOH HOH 152 A HOH 76 2 HOH HOH 153 A HOH 77 2 HOH HOH 154 A HOH 79 2 HOH HOH 155 A HOH 84 2 HOH HOH 156 A HOH 89 2 HOH HOH 157 A HOH 90 2 HOH HOH 158 A HOH 92 2 HOH HOH 159 A HOH 94 2 HOH HOH 160 A HOH 95 2 HOH HOH 161 A HOH 96 2 HOH HOH 162 A HOH 98 2 HOH HOH 163 A HOH 99 2 HOH HOH 164 A HOH 100 2 HOH HOH 165 A HOH 102 2 HOH HOH 166 A HOH 104 2 HOH HOH 167 A HOH 112 2 HOH HOH 168 A HOH 113 2 HOH HOH 169 A HOH 115 2 HOH HOH 170 A HOH 116 2 HOH HOH 171 A HOH 117 2 HOH HOH 172 A HOH 119 2 HOH HOH 173 A HOH 121 2 HOH HOH 174 A HOH 125 2 HOH HOH 175 A HOH 127 2 HOH HOH 176 A HOH 135 2 HOH HOH 177 A HOH 141 2 HOH HOH 178 A HOH 143 2 HOH HOH 179 A HOH 149 2 HOH HOH 180 A HOH 152 2 HOH HOH 181 A HOH 171 2 HOH HOH 182 A HOH 176 2 HOH HOH 183 A HOH 185 2 HOH HOH 184 A HOH 187 2 HOH HOH 185 A HOH 70 2 HOH HOH 186 A HOH 189 2 HOH HOH 187 A HOH 190 2 HOH HOH 188 A HOH 103 2 HOH HOH 167 B HOH 179 2 HOH HOH 168 B HOH 181 2 HOH HOH 169 B HOH 35 2 HOH HOH 170 B HOH 42 2 HOH HOH 171 B HOH 48 2 HOH HOH 172 B HOH 51 2 HOH HOH 173 B HOH 52 2 HOH HOH 174 B HOH 54 2 HOH HOH 175 B HOH 55 2 HOH HOH 176 B HOH 60 2 HOH HOH 177 B HOH 61 2 HOH HOH 178 B HOH 64 2 HOH HOH 179 B HOH 65 2 HOH HOH 180 B HOH 72 2 HOH HOH 181 B HOH 73 2 HOH HOH 182 B HOH 75 2 HOH HOH 183 B HOH 81 2 HOH HOH 184 B HOH 86 2 HOH HOH 185 B HOH 88 2 HOH HOH 186 B HOH 91 2 HOH HOH 187 B HOH 93 2 HOH HOH 188 B HOH 105 2 HOH HOH 189 B HOH 106 2 HOH HOH 190 B HOH 107 2 HOH HOH 191 B HOH 108 2 HOH HOH 192 B HOH 109 2 HOH HOH 193 B HOH 110 2 HOH HOH 194 B HOH 111 2 HOH HOH 195 B HOH 114 2 HOH HOH 196 B HOH 118 2 HOH HOH 197 B HOH 122 2 HOH HOH 198 B HOH 124 2 HOH HOH 199 B HOH 126 2 HOH HOH 200 B HOH 128 2 HOH HOH 201 B HOH 136 2 HOH HOH 202 B HOH 138 2 HOH HOH 203 B HOH 145 2 HOH HOH 204 B HOH 151 2 HOH HOH 205 B HOH 161 2 HOH HOH 206 B HOH 166 2 HOH HOH 207 B HOH 172 2 HOH HOH 208 B HOH 177 2 HOH HOH 209 B HOH 182 2 HOH HOH 210 B HOH 183 2 HOH HOH 211 B HOH 184 2 HOH HOH 212 B HOH 186 2 HOH HOH 213 B HOH 188 2 HOH HOH 214 B n 1 1 A SER 2 n 2 SER 2 A LEU 3 n 3 LEU 3 A ARG 4 n 4 ARG 4 A ILE 5 n 5 ILE 5 A LEU 6 n 6 LEU 6 A ILE 7 n 7 ILE 7 A VAL 8 n 8 VAL 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A LYS 12 n 12 LYS 12 A LEU 13 n 13 LEU 13 A THR 14 n 14 THR 14 A ARG 15 n 15 ARG 15 A ASP 16 n 16 ASP 16 A GLY 17 n 17 GLY 17 A LEU 18 n 18 LEU 18 A ILE 19 n 19 ILE 19 A ALA 20 n 20 ALA 20 A ASN 21 n 21 ASN 21 A ILE 22 n 22 ILE 22 A ASN 23 n 23 ASN 23 A TRP 24 n 24 TRP 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A LEU 27 n 27 LEU 27 A SER 28 n 28 SER 28 A PHE 29 n 29 PHE 29 A ASP 30 n 30 ASP 30 A GLN 31 n 31 GLN 31 A ILE 32 n 32 ILE 32 A ASP 33 n 33 ASP 33 A GLN 34 n 34 GLN 34 A ALA 35 n 35 ALA 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A GLY 38 n 38 GLY 38 A ILE 39 n 39 ILE 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ILE 42 n 42 ILE 42 A GLN 43 n 43 GLN 43 A ILE 44 n 44 ILE 44 A ALA 45 n 45 ALA 45 A LEU 46 n 46 LEU 46 A LYS 47 n 47 LYS 47 A HIS 48 n 48 HIS 48 A PRO 49 n 49 PRO 49 A PRO 50 n 50 PRO 50 A ASN 51 n 51 ASN 51 A VAL 52 n 52 VAL 52 A LEU 53 n 53 LEU 53 A LEU 54 n 54 LEU 54 A THR 55 n 55 THR 55 A ASP 56 n 56 ASP 56 A VAL 57 n 57 VAL 57 A ARG 58 n 58 ARG 58 A MET 59 n 59 MET 59 A PRO 60 n 60 PRO 60 A ARG 61 n 61 ARG 61 A MET 62 n 62 MET 62 A ASP 63 n 63 ASP 63 A GLY 64 n 64 GLY 64 A ILE 65 n 65 ILE 65 A GLU 66 n 66 GLU 66 A LEU 67 n 67 LEU 67 A VAL 68 n 68 VAL 68 A ASP 69 n 69 ASP 69 A ASN 70 n 70 ASN 70 A ILE 71 n 71 ILE 71 A LEU 72 n 72 LEU 72 A LYS 73 n 73 LYS 73 A LEU 74 n 74 LEU 74 A TYR 75 n 75 TYR 75 A PRO 76 n 76 PRO 76 A ASP 77 n 77 ASP 77 A CYS 78 n 78 CYS 78 A SER 79 n 79 SER 79 A VAL 80 n 80 VAL 80 A ILE 81 n 81 ILE 81 A PHE 82 n 82 PHE 82 A MET 83 n 83 MET 83 A SER 84 n 84 SER 84 A GLY 85 n 85 GLY 85 A TYR 86 n 86 TYR 86 A SER 87 n 87 SER 87 A ASP 88 n 88 ASP 88 A LYS 89 n 89 LYS 89 A GLU 90 n 90 GLU 90 A TYR 91 n 91 TYR 91 A LEU 92 n 92 LEU 92 A n 93 93 A n 94 94 A n 95 95 A n 96 96 A n 97 97 A n 98 98 A ARG 99 n 99 ARG 99 A ALA 100 n 100 ALA 100 A ILE 101 n 101 ILE 101 A ARG 102 n 102 ARG 102 A TYR 103 n 103 TYR 103 A VAL 104 n 104 VAL 104 A GLU 105 n 105 GLU 105 A LYS 106 n 106 LYS 106 A PRO 107 n 107 PRO 107 A ILE 108 n 108 ILE 108 A ASP 109 n 109 ASP 109 A PRO 110 n 110 PRO 110 A SER 111 n 111 SER 111 A GLU 112 n 112 GLU 112 A ILE 113 n 113 ILE 113 A MET 114 n 114 MET 114 A ASP 115 n 115 ASP 115 A ALA 116 n 116 ALA 116 A LEU 117 n 117 LEU 117 A LYS 118 n 118 LYS 118 A GLN 119 n 119 GLN 119 A SER 120 n 120 SER 120 A ILE 121 n 121 ILE 121 A GLN 122 n 122 GLN 122 A THR 123 n 123 THR 123 A VAL 124 n 124 VAL 124 A LEU 125 n 125 LEU 125 A GLN 126 n 126 GLN 126 A HIS 127 n 127 HIS 127 A GLN 128 n 128 GLN 128 A ALA 129 n 129 ALA 129 A GLN 130 n 130 GLN 130 A GLN 131 n 131 GLN 131 A n 132 132 A n 133 133 A n 134 134 A n 135 135 A n 136 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 141 141 A n 1 1 B SER 2 n 2 SER 2 B LEU 3 n 3 LEU 3 B ARG 4 n 4 ARG 4 B ILE 5 n 5 ILE 5 B LEU 6 n 6 LEU 6 B ILE 7 n 7 ILE 7 B VAL 8 n 8 VAL 8 B ASP 9 n 9 ASP 9 B ASP 10 n 10 ASP 10 B GLU 11 n 11 GLU 11 B LYS 12 n 12 LYS 12 B LEU 13 n 13 LEU 13 B THR 14 n 14 THR 14 B ARG 15 n 15 ARG 15 B ASP 16 n 16 ASP 16 B GLY 17 n 17 GLY 17 B LEU 18 n 18 LEU 18 B ILE 19 n 19 ILE 19 B ALA 20 n 20 ALA 20 B ASN 21 n 21 ASN 21 B ILE 22 n 22 ILE 22 B ASN 23 n 23 ASN 23 B TRP 24 n 24 TRP 24 B LYS 25 n 25 LYS 25 B ALA 26 n 26 ALA 26 B LEU 27 n 27 LEU 27 B SER 28 n 28 SER 28 B PHE 29 n 29 PHE 29 B ASP 30 n 30 ASP 30 B GLN 31 n 31 GLN 31 B ILE 32 n 32 ILE 32 B ASP 33 n 33 ASP 33 B GLN 34 n 34 GLN 34 B ALA 35 n 35 ALA 35 B ASP 36 n 36 ASP 36 B ASP 37 n 37 ASP 37 B GLY 38 n 38 GLY 38 B ILE 39 n 39 ILE 39 B ASN 40 n 40 ASN 40 B ALA 41 n 41 ALA 41 B ILE 42 n 42 ILE 42 B GLN 43 n 43 GLN 43 B ILE 44 n 44 ILE 44 B ALA 45 n 45 ALA 45 B LEU 46 n 46 LEU 46 B LYS 47 n 47 LYS 47 B HIS 48 n 48 HIS 48 B PRO 49 n 49 PRO 49 B PRO 50 n 50 PRO 50 B ASN 51 n 51 ASN 51 B VAL 52 n 52 VAL 52 B LEU 53 n 53 LEU 53 B LEU 54 n 54 LEU 54 B THR 55 n 55 THR 55 B ASP 56 n 56 ASP 56 B VAL 57 n 57 VAL 57 B ARG 58 n 58 ARG 58 B MET 59 n 59 MET 59 B PRO 60 n 60 PRO 60 B ARG 61 n 61 ARG 61 B MET 62 n 62 MET 62 B ASP 63 n 63 ASP 63 B GLY 64 n 64 GLY 64 B ILE 65 n 65 ILE 65 B GLU 66 n 66 GLU 66 B LEU 67 n 67 LEU 67 B VAL 68 n 68 VAL 68 B ASP 69 n 69 ASP 69 B ASN 70 n 70 ASN 70 B ILE 71 n 71 ILE 71 B LEU 72 n 72 LEU 72 B LYS 73 n 73 LYS 73 B LEU 74 n 74 LEU 74 B TYR 75 n 75 TYR 75 B PRO 76 n 76 PRO 76 B ASP 77 n 77 ASP 77 B CYS 78 n 78 CYS 78 B SER 79 n 79 SER 79 B VAL 80 n 80 VAL 80 B ILE 81 n 81 ILE 81 B PHE 82 n 82 PHE 82 B MET 83 n 83 MET 83 B SER 84 n 84 SER 84 B GLY 85 n 85 GLY 85 B TYR 86 n 86 TYR 86 B SER 87 n 87 SER 87 B ASP 88 n 88 ASP 88 B LYS 89 n 89 LYS 89 B GLU 90 n 90 GLU 90 B TYR 91 n 91 TYR 91 B LEU 92 n 92 LEU 92 B LYS 93 n 93 LYS 93 B ALA 94 n 94 ALA 94 B ALA 95 n 95 ALA 95 B ILE 96 n 96 ILE 96 B LYS 97 n 97 LYS 97 B PHE 98 n 98 PHE 98 B ARG 99 n 99 ARG 99 B ALA 100 n 100 ALA 100 B ILE 101 n 101 ILE 101 B ARG 102 n 102 ARG 102 B TYR 103 n 103 TYR 103 B VAL 104 n 104 VAL 104 B GLU 105 n 105 GLU 105 B LYS 106 n 106 LYS 106 B PRO 107 n 107 PRO 107 B ILE 108 n 108 ILE 108 B ASP 109 n 109 ASP 109 B PRO 110 n 110 PRO 110 B SER 111 n 111 SER 111 B GLU 112 n 112 GLU 112 B ILE 113 n 113 ILE 113 B MET 114 n 114 MET 114 B ASP 115 n 115 ASP 115 B ALA 116 n 116 ALA 116 B LEU 117 n 117 LEU 117 B LYS 118 n 118 LYS 118 B GLN 119 n 119 GLN 119 B SER 120 n 120 SER 120 B ILE 121 n 121 ILE 121 B GLN 122 n 122 GLN 122 B THR 123 n 123 THR 123 B VAL 124 n 124 VAL 124 B LEU 125 n 125 LEU 125 B GLN 126 n 126 GLN 126 B HIS 127 n 127 HIS 127 B GLN 128 n 128 GLN 128 B ALA 129 n 129 ALA 129 B GLN 130 n 130 GLN 130 B n 131 131 B n 132 132 B n 133 133 B n 134 134 B n 135 135 B n 136 136 B n 137 137 B n 138 138 B n 139 139 B n 140 140 B n 141 141 B 1.7511 -0.0806 -1.3392 5.8884 -0.4326 4.5602 0.0289 0.2427 0.2684 -0.1363 0.0704 0.0771 -0.2744 -0.2829 -0.0993 0.1564 -0.0104 -0.0308 0.2683 0.0429 0.2511 refined 9.9151 59.0816 -8.6800 X-RAY DIFFRACTION 3.1519 0.7556 0.0941 2.7321 -0.1675 3.9482 -0.0169 0.0113 -0.0910 0.0884 -0.0055 0.1388 0.1901 -0.1149 0.0224 0.1928 0.0043 -0.0208 0.1806 -0.0126 0.1919 refined -3.9554 46.7703 15.5149 X-RAY DIFFRACTION A 2 A 2 A 131 A 131 X-RAY DIFFRACTION 1 B 2 B 2 B 130 B 130 X-RAY DIFFRACTION 2 author_defined_assembly 2 dimeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 33 A O ASP 33 A N ILE 7 A N ILE 7 A N LEU 6 A N LEU 6 A O VAL 52 A O VAL 52 A N LEU 53 A N LEU 53 A O ILE 81 A O ILE 81 A N PHE 82 A N PHE 82 A O VAL 104 A O VAL 104 B O ASP 30 B O ASP 30 B N LEU 3 B N LEU 3 B N VAL 8 B N VAL 8 B O LEU 54 B O LEU 54 B N THR 55 B N THR 55 B O MET 83 B O MET 83 B N PHE 82 B N PHE 82 B O ARG 102 B O ARG 102 1 A MET 1 A MET 1 1 Y 1 A LYS 93 A LYS 93 1 Y 1 A ALA 94 A ALA 94 1 Y 1 A ALA 95 A ALA 95 1 Y 1 A ILE 96 A ILE 96 1 Y 1 A LYS 97 A LYS 97 1 Y 1 A PHE 98 A PHE 98 1 Y 1 A ASP 132 A ASP 132 1 Y 1 A SER 133 A SER 133 1 Y 1 A GLU 134 A GLU 134 1 Y 1 A GLY 135 A GLY 135 1 Y 1 A HIS 136 A HIS 136 1 Y 1 A HIS 137 A HIS 137 1 Y 1 A HIS 138 A HIS 138 1 Y 1 A HIS 139 A HIS 139 1 Y 1 A HIS 140 A HIS 140 1 Y 1 A HIS 141 A HIS 141 1 Y 1 B MET 1 B MET 1 1 Y 1 B GLN 131 B GLN 131 1 Y 1 B ASP 132 B ASP 132 1 Y 1 B SER 133 B SER 133 1 Y 1 B GLU 134 B GLU 134 1 Y 1 B GLY 135 B GLY 135 1 Y 1 B HIS 136 B HIS 136 1 Y 1 B HIS 137 B HIS 137 1 Y 1 B HIS 138 B HIS 138 1 Y 1 B HIS 139 B HIS 139 1 Y 1 B HIS 140 B HIS 140 1 Y 1 B HIS 141 B HIS 141 1 Y 1 A A OD1 OD1 ASP ASP 36 37 1.54 1 A A CG2 CD1 ILE ILE 108 113 1.91 1 B B OD1 OH ASP TYR 63 91 1.98 1 A A O CD1 ILE TRP 22 24 2.13 1 A A O OD2 ILE ASP 65 69 2.18 1 A A GLN ALA 34 35 -93.98 1 A A ARG ALA 99 100 -67.49 1 A A ALA GLN 129 130 148.61 1 B A OG O SER HOH 87 158 2.13 1_555 1_455 1 A ASP 16 -28.32 -60.89 1 A ALA 26 -69.44 23.77 1 A PHE 29 -32.73 130.61 1 A ALA 35 158.51 110.68 1 A PRO 60 -51.56 -84.62 1 A MET 62 175.50 98.93 1 A TYR 75 -154.48 70.40 1 A SER 84 -125.31 -58.43 1 A TYR 86 63.67 -78.40 1 A SER 87 -20.36 -71.36 1 A ALA 100 -168.99 101.18 1 A LEU 125 -68.23 -71.14 1 A GLN 126 -25.37 -48.81 1 A GLN 130 -94.48 30.15 1 B ASP 9 179.85 135.02 1 B MET 59 -166.43 118.65 1 B PRO 60 -49.73 156.01 1 B ARG 61 50.69 -1.16 1 B MET 62 -176.30 92.17 1 B ASP 63 -36.91 158.71 1 B LYS 73 -28.58 -62.41 1 B TYR 75 -152.81 65.08 1 B TYR 86 -64.36 -77.03 1 B SER 87 -113.10 67.32 1 B ILE 96 -80.98 -78.36 1 B LYS 97 99.76 -72.13 1 B ARG 99 170.50 155.91 1 B ILE 101 -25.23 90.63 1 B GLN 128 -59.24 -4.75 22.484 -0.940 0.000 0.820 0.160 0.000 1.240 0.955 0.873 The Friedel pairs were used in phasing. 0.300 0.183 0.189 2.600 20.000 395 8565 4.600 100.000 29.312 0.309 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 SAD 0.404 0.800 0.800 1.200 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.600 20.000 95 2115 0 0 2020 0.018 0.022 2050 2.098 1.983 2774 10.749 5.000 250 43.380 25.521 96 22.906 15.000 389 30.959 15.000 12 0.128 0.200 324 0.008 0.021 1511 1.227 3.500 1266 5.854 50.000 2060 14.252 50.000 784 1.061 4.500 714 0.390 0.244 2.667 15 395 410 20 100.000 2.50 50.0 3CU5 16975 0.101 1.713 1 7.700 3.300 85.800 0.407 2.50 2.59 727 0.873 1 1.40 36.40 0.353 2.59 2.69 1088 0.747 1 1.70 55.30 0.322 2.69 2.82 1523 0.841 1 2.20 75.70 0.262 2.82 2.96 1783 0.801 1 2.70 92.80 0.218 2.96 3.15 1989 0.947 1 3.30 99.50 0.176 3.15 3.39 1981 1.132 1 3.70 100.00 0.122 3.39 3.73 1983 1.614 1 3.90 100.00 0.101 3.73 4.27 1966 2.202 1 3.90 100.00 0.078 4.27 5.38 1964 2.680 1 3.90 99.90 0.061 5.38 50.00 1971 2.512 1 3.80 99.30 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing George Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.005 data collection MAR345 CCD data reduction HKL-2000 phasing SHELXD Crystal structure of a two component transcriptional regulator AraC from Clostridium phytofermentans ISDg 1 N N 1 N N 2 N N 2 N N A GLU 11 A GLU 11 HELX_P A ILE 22 A ILE 22 1 1 12 A ASN 23 A ASN 23 HELX_P A LEU 27 A LEU 27 5 2 5 A ASP 37 A ASP 37 HELX_P A LEU 46 A LEU 46 1 3 10 A ASP 63 A ASP 63 HELX_P A TYR 75 A TYR 75 1 4 13 A ASP 109 A ASP 109 HELX_P A ALA 129 A ALA 129 1 5 21 B GLU 11 B GLU 11 HELX_P B ASN 21 B ASN 21 1 6 11 B ASP 37 B ASP 37 HELX_P B HIS 48 B HIS 48 1 7 12 B ASP 63 B ASP 63 HELX_P B TYR 75 B TYR 75 1 8 13 B ASP 88 B ASP 88 HELX_P B ILE 96 B ILE 96 1 9 9 B SER 111 B SER 111 HELX_P B GLN 128 B GLN 128 1 10 18 TRANSCRIPTION REGULATOR STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, New York SGX Research Center for Structural Genomics, NYSGXRC, transcriptional regulator, AraC, TRANSCRIPTION REGULATOR, PSI-2 A LYS 106 A LYS 106 1 A PRO 107 A PRO 107 -4.23 B LYS 106 B LYS 106 1 B PRO 107 B PRO 107 -6.31 A9KIW7_CLOPH UNP 1 2 A9KIW7 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM SGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQHQAQQDS 2 131 3CU5 4 133 A9KIW7 A 1 4 133 2 131 3CU5 4 133 A9KIW7 B 1 4 133 1 expression tag MET 1 3CU5 A A9KIW7 UNP 1 1 expression tag SER 2 3CU5 A A9KIW7 UNP 2 1 expression tag LEU 3 3CU5 A A9KIW7 UNP 3 1 expression tag GLU 134 3CU5 A A9KIW7 UNP 134 1 expression tag GLY 135 3CU5 A A9KIW7 UNP 135 1 expression tag HIS 136 3CU5 A A9KIW7 UNP 136 1 expression tag HIS 137 3CU5 A A9KIW7 UNP 137 1 expression tag HIS 138 3CU5 A A9KIW7 UNP 138 1 expression tag HIS 139 3CU5 A A9KIW7 UNP 139 1 expression tag HIS 140 3CU5 A A9KIW7 UNP 140 1 expression tag HIS 141 3CU5 A A9KIW7 UNP 141 2 expression tag MET 1 3CU5 B A9KIW7 UNP 1 2 expression tag SER 2 3CU5 B A9KIW7 UNP 2 2 expression tag LEU 3 3CU5 B A9KIW7 UNP 3 2 expression tag GLU 134 3CU5 B A9KIW7 UNP 134 2 expression tag GLY 135 3CU5 B A9KIW7 UNP 135 2 expression tag HIS 136 3CU5 B A9KIW7 UNP 136 2 expression tag HIS 137 3CU5 B A9KIW7 UNP 137 2 expression tag HIS 138 3CU5 B A9KIW7 UNP 138 2 expression tag HIS 139 3CU5 B A9KIW7 UNP 139 2 expression tag HIS 140 3CU5 B A9KIW7 UNP 140 2 expression tag HIS 141 3CU5 B A9KIW7 UNP 141 5 5 parallel parallel parallel parallel parallel parallel parallel parallel A GLN 31 A GLN 31 A ALA 35 A ALA 35 A ARG 4 A ARG 4 A VAL 8 A VAL 8 A VAL 52 A VAL 52 A ASP 56 A ASP 56 A SER 79 A SER 79 A MET 83 A MET 83 A ARG 102 A ARG 102 A VAL 104 A VAL 104 B PHE 29 B PHE 29 B ALA 35 B ALA 35 B LEU 3 B LEU 3 B VAL 8 B VAL 8 B VAL 52 B VAL 52 B ASP 56 B ASP 56 B SER 79 B SER 79 B SER 84 B SER 84 B ARG 102 B ARG 102 B GLU 105 B GLU 105 4 P 1 21 1