0.005226
0.000000
0.000320
0.000000
0.020800
0.000000
0.000000
0.000000
0.011053
0.00000
0.00000
0.00000
Xiao, H.
Murakami, H.
Suga, H.
Ferre-D'Amare, A.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
93.50
90.00
191.368
48.076
90.645
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
Co 2
58.933
COBALT (II) ION
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
CO
N
147
N
O
N
148
N
P
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
C
N
153
R
C
N
154
N
O
N
155
S
C
N
156
N
O
N
157
R
C
N
158
N
O
N
159
R
C
Y
160
N
N
Y
161
N
C
Y
162
N
N
Y
163
N
C
N
164
N
C
N
165
N
O
N
166
N
N
N
167
N
C
N
168
N
N
N
169
N
N
Y
170
N
C
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
N
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
O
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
P
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
P
N
240
N
O
N
241
N
O
N
242
N
O
N
243
N
P
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
C
N
248
R
C
N
249
N
O
N
250
S
C
N
251
N
O
N
252
R
C
N
253
N
O
N
254
R
C
Y
255
N
N
Y
256
N
C
Y
257
N
N
Y
258
N
C
N
259
N
C
N
260
N
O
N
261
N
N
N
262
N
C
N
263
N
N
N
264
N
N
Y
265
N
C
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
Y
287
N
C
Y
288
N
N
Y
289
N
C
Y
290
N
C
Y
291
N
N
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
S
C
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
K
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
MG
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
SE
N
382
N
C
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
R
C
N
453
N
O
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
N
476
N
O
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
O
N
490
N
P
N
491
N
O
N
492
N
O
N
493
N
O
N
494
N
C
N
495
R
C
N
496
N
O
N
497
S
C
N
498
N
O
N
499
R
C
N
500
N
O
N
501
R
C
N
502
N
N
N
503
N
C
N
504
N
O
N
505
N
N
N
506
N
C
N
507
N
O
N
508
N
C
N
509
N
C
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
N
N
524
S
C
N
525
N
C
N
526
N
O
N
527
N
C
N
528
N
C
N
529
N
C
N
530
N
O
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
sing
Y
171
N
doub
N
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
doub
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
sing
Y
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
sing
Y
293
N
doub
Y
294
N
doub
N
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
doub
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
Y
467
N
doub
Y
468
N
sing
Y
469
N
sing
N
470
N
sing
Y
471
N
doub
N
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
doub
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
doub
N
511
N
sing
N
512
N
doub
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
doub
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
UK
Nature
NATUAS
0006
0028-0836
454
358
361
10.1038/nature07033
18548004
Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme.
2008
10.2210/pdb3cun/pdb
pdb_00003cun
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Si (111)
CCD
2005-10-06
ADSC QUANTUM 315
Si (111)
SINGLE WAVELENGTH
M
x-ray
1
0.9572
1.0
5.0.2
ALS
0.9572
SYNCHROTRON
ALS BEAMLINE 5.0.2
Flexizyme
29820.535
RNA (92-MER)
2
man
polymer
11574.792
U1 small nuclear ribonucleoprotein A
UNP residues 1-98
Y31H, Q36R
2
man
polymer
24.305
MAGNESIUM ION
9
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
58.933
COBALT (II) ION
1
syn
non-polymer
U1 snRNP protein A, U1A protein, U1-A
no
yes
(GTP)GAUGGCGAAAGCCAUUUCCGCAGGCCCCAUUGCACUCCGGGGUAUUGGCGUUAGGUGGUGGUACGAGGUUCGAAU
CCUCGUACCGCAGCCA
GGAUGGCGAAAGCCAUUUCCGCAGGCCCCAUUGCACUCCGGGGUAUUGGCGUUAGGUGGUGGUACGAGGUUCGAAUCCUC
GUACCGCAGCCA
C,D
polyribonucleotide
no
yes
(MSE)AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK(MSE)RGQAFVIFKEVSSATNALRS
(MSE)QGFPFYDKP(MSE)RIQYAKTDSDIIAK(MSE)K
MAVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK
PMRIQYAKTDSDIIAKMK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
CELL-FREE SYNTHESIS
human
sample
SNRPA
9606
Homo sapiens
Escherichia coli
1
2.51
51.07
VAPOR DIFFUSION
7.0
100 mM magenesium formate pH 7.0, 15% PEG 3000, 1 M lithium chloride, VAPOR DIFFUSION, temperature 295K
295
magnesium formate
1
magnesium formate
2
PEG 3000
2
lithium chloride
2
3.174
1
19
C
12
C
7
3.322
C_G12:C7_C
1
9.240
-0.755
-0.013
0.219
6.264
1
19
C
13
C
6
3.642
C_C13:G6_C
2
-7.725
0.369
-0.225
0.020
4.526
1
19
C
14
C
5
3.315
C_C14:G5_C
3
-8.962
-0.545
-0.419
-0.264
-7.429
1
20
C
15
C
4
5.413
C_A15:U4_C
4
-11.611
0.258
0.543
-0.133
-6.461
1
20
C
16
C
3
2.629
C_U16:A3_C
5
-22.768
-0.373
0.378
0.175
3.558
28
C
17
C
2
1.988
C_U17:G2_C
6
-11.508
2.504
0.279
-0.547
7.234
1
19
C
19
C
1
-0.032
C_C19:GTP1_C
7
8.613
0.474
-0.728
-0.222
-14.155
1
19
C
20
C
51
4.583
C_C20:G51_C
8
4.878
-0.487
0.629
0.253
-23.845
1
19
C
21
C
50
5.149
C_G21:C50_C
9
-32.053
-0.456
-0.733
0.123
-18.086
1
19
C
22
C
49
-9.025
C_C22:G49_C
10
-12.578
-0.025
0.724
-0.242
-6.771
8
C
23
C
48
-21.081
C_A23:G48_C
11
1.376
0.311
0.063
1.286
29.103
1
C
24
C
47
-58.566
C_G24:U47_C
12
8.210
4.861
-0.254
0.807
-3.968
28
C
25
C
44
-4.884
C_G25:U44_C
13
-0.888
-2.255
-0.750
-0.749
7.575
1
19
C
26
C
43
-0.070
C_C26:G43_C
14
-19.470
0.823
0.154
-0.633
10.631
1
19
C
27
C
42
-1.335
C_C27:G42_C
15
-8.150
-0.049
-0.099
-0.045
4.209
1
19
C
28
C
41
-3.052
C_C28:G41_C
16
-9.427
0.054
-0.172
-0.454
7.907
1
19
C
29
C
40
-5.922
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6.807
0.443
-1.406
DD_U163A164:U182A183_DD
49
-1.070
1.562
39.648
-2.896
-0.778
2.557
26.753
D
D
164
165
11.844
D
D
182
181
3.089
5.439
0.586
-2.110
DD_A164C165:G181U182_DD
50
-1.894
4.125
26.137
-5.793
-1.695
2.643
25.550
D
D
165
166
15.418
D
D
181
180
3.536
6.686
-0.416
-2.316
DD_C165G166:C180G181_DD
51
5.605
-12.925
24.037
-7.092
2.497
2.458
34.865
D
D
166
167
21.248
D
D
180
179
3.144
12.447
-0.178
-1.418
DD_G166A167:U179C180_DD
52
-3.300
5.633
32.468
-4.047
-0.149
2.622
29.171
D
D
167
168
14.510
D
D
179
178
3.164
7.140
-0.232
-1.617
DD_A167G168:C178U179_DD
53
-8.141
16.543
27.127
-4.639
-1.168
2.766
36.399
D
D
168
169
26.928
D
D
178
177
3.953
16.197
0.399
-1.863
DD_G168G169:C177C178_DD
54
5.588
-9.291
32.236
-5.448
0.212
2.839
48.476
D
D
169
170
2.137
D
D
177
176
2.928
1.752
0.594
-0.829
DD_G169U170:U176C177_DD
55
-4.273
5.211
48.269
-1.129
-1.015
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
Data collection
1
0
2008-06-24
1
1
2011-07-13
1
2
2021-10-20
1
3
2023-08-30
1
4
2023-11-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Aminoacyl-tRNA synthetase ribozyme
RCSB
Y
RCSB
2008-04-16
REL
REL
MG
MAGNESIUM ION
K
POTASSIUM ION
CO
COBALT (II) ION
3CUL
PDB entry 3CUL
PDB
experimental model
MG
501
3
MG
MG
501
C
MG
503
3
MG
MG
503
C
MG
506
3
MG
MG
506
C
MG
507
3
MG
MG
507
C
MG
510
3
MG
MG
510
C
K
511
4
K
K
511
C
MG
502
3
MG
MG
502
D
MG
504
3
MG
MG
504
D
MG
512
3
MG
MG
512
D
MG
513
3
MG
MG
513
D
CO
514
5
CO
CO
514
B
GTP
1
n
1
GTP
1
C
G
2
n
2
G
2
C
A
3
n
3
A
3
C
U
4
n
4
U
4
C
G
5
n
5
G
5
C
G
6
n
6
G
6
C
C
7
n
7
C
7
C
G
8
n
8
G
8
C
A
9
n
9
A
9
C
A
10
n
10
A
10
C
A
11
n
11
A
11
C
G
12
n
12
G
12
C
C
13
n
13
C
13
C
C
14
n
14
C
14
C
A
15
n
15
A
15
C
U
16
n
16
U
16
C
U
17
n
17
U
17
C
U
18
n
18
U
18
C
C
19
n
19
C
19
C
C
20
n
20
C
20
C
G
21
n
21
G
21
C
C
22
n
22
C
22
C
A
23
n
23
A
23
C
G
24
n
24
G
24
C
G
25
n
25
G
25
C
C
26
n
26
C
26
C
C
27
n
27
C
27
C
C
28
n
28
C
28
C
C
29
n
29
C
29
C
A
30
n
30
A
30
C
U
31
n
31
U
31
C
U
32
n
32
U
32
C
G
33
n
33
G
33
C
C
34
n
34
C
34
C
A
35
n
35
A
35
C
C
36
n
36
C
36
C
U
37
n
37
U
37
C
C
38
n
38
C
38
C
C
39
n
39
C
39
C
G
40
n
40
G
40
C
G
41
n
41
G
41
C
G
42
n
42
G
42
C
G
43
n
43
G
43
C
U
44
n
44
U
44
C
A
45
n
45
A
45
C
U
46
n
46
U
46
C
U
47
n
47
U
47
C
G
48
n
48
G
48
C
G
49
n
49
G
49
C
C
50
n
50
C
50
C
G
51
n
51
G
51
C
U
52
n
52
U
52
C
U
53
n
53
U
53
C
A
54
n
54
A
54
C
G
55
n
55
G
55
C
G
56
n
56
G
56
C
U
57
n
57
U
57
C
G
58
n
58
G
58
C
G
59
n
59
G
59
C
U
60
n
60
U
60
C
G
61
n
61
G
61
C
G
62
n
62
G
62
C
U
63
n
63
U
63
C
A
64
n
64
A
64
C
C
65
n
65
C
65
C
G
66
n
66
G
66
C
A
67
n
67
A
67
C
G
68
n
68
G
68
C
G
69
n
69
G
69
C
U
70
n
70
U
70
C
U
71
n
71
U
71
C
C
72
n
72
C
72
C
G
73
n
73
G
73
C
A
74
n
74
A
74
C
A
75
n
75
A
75
C
U
76
n
76
U
76
C
C
77
n
77
C
77
C
C
78
n
78
C
78
C
U
79
n
79
U
79
C
C
80
n
80
C
80
C
G
81
n
81
G
81
C
U
82
n
82
U
82
C
A
83
n
83
A
83
C
C
84
n
84
C
84
C
C
85
n
85
C
85
C
G
86
n
86
G
86
C
C
87
n
87
C
87
C
A
88
n
88
A
88
C
G
89
n
89
G
89
C
C
90
n
90
C
90
C
C
91
n
91
C
91
C
A
92
n
92
A
92
C
GTP
101
n
1
GTP
101
D
G
102
n
2
G
102
D
A
103
n
3
A
103
D
U
104
n
4
U
104
D
G
105
n
5
G
105
D
G
106
n
6
G
106
D
C
107
n
7
C
107
D
G
108
n
8
G
108
D
A
109
n
9
A
109
D
A
110
n
10
A
110
D
A
111
n
11
A
111
D
G
112
n
12
G
112
D
C
113
n
13
C
113
D
C
114
n
14
C
114
D
A
115
n
15
A
115
D
U
116
n
16
U
116
D
U
117
n
17
U
117
D
U
118
n
18
U
118
D
C
119
n
19
C
119
D
C
120
n
20
C
120
D
G
121
n
21
G
121
D
C
122
n
22
C
122
D
A
123
n
23
A
123
D
G
124
n
24
G
124
D
G
125
n
25
G
125
D
C
126
n
26
C
126
D
C
127
n
27
C
127
D
C
128
n
28
C
128
D
C
129
n
29
C
129
D
A
130
n
30
A
130
D
U
131
n
31
U
131
D
U
132
n
32
U
132
D
G
133
n
33
G
133
D
C
134
n
34
C
134
D
A
135
n
35
A
135
D
C
136
n
36
C
136
D
U
137
n
37
U
137
D
C
138
n
38
C
138
D
C
139
n
39
C
139
D
G
140
n
40
G
140
D
G
141
n
41
G
141
D
G
142
n
42
G
142
D
G
143
n
43
G
143
D
U
144
n
44
U
144
D
A
145
n
45
A
145
D
U
146
n
46
U
146
D
U
147
n
47
U
147
D
G
148
n
48
G
148
D
G
149
n
49
G
149
D
C
150
n
50
C
150
D
G
151
n
51
G
151
D
U
152
n
52
U
152
D
U
153
n
53
U
153
D
A
154
n
54
A
154
D
G
155
n
55
G
155
D
G
156
n
56
G
156
D
U
157
n
57
U
157
D
G
158
n
58
G
158
D
G
159
n
59
G
159
D
U
160
n
60
U
160
D
G
161
n
61
G
161
D
G
162
n
62
G
162
D
U
163
n
63
U
163
D
A
164
n
64
A
164
D
C
165
n
65
C
165
D
G
166
n
66
G
166
D
A
167
n
67
A
167
D
G
168
n
68
G
168
D
G
169
n
69
G
169
D
U
170
n
70
U
170
D
U
171
n
71
U
171
D
C
172
n
72
C
172
D
G
173
n
73
G
173
D
A
174
n
74
A
174
D
A
175
n
75
A
175
D
U
176
n
76
U
176
D
C
177
n
77
C
177
D
C
178
n
78
C
178
D
U
179
n
79
U
179
D
C
180
n
80
C
180
D
G
181
n
81
G
181
D
U
182
n
82
U
182
D
A
183
n
83
A
183
D
C
184
n
84
C
184
D
C
185
n
85
C
185
D
G
186
n
86
G
186
D
C
187
n
87
C
187
D
A
188
n
88
A
188
D
G
189
n
89
G
189
D
C
190
n
90
C
190
D
C
191
n
91
C
191
D
A
192
n
92
A
192
D
n
1
296
A
n
2
297
A
n
3
298
A
n
4
299
A
n
5
300
A
n
6
301
A
ARG
302
n
7
ARG
302
A
PRO
303
n
8
PRO
303
A
ASN
304
n
9
ASN
304
A
HIS
305
n
10
HIS
305
A
THR
306
n
11
THR
306
A
ILE
307
n
12
ILE
307
A
TYR
308
n
13
TYR
308
A
ILE
309
n
14
ILE
309
A
ASN
310
n
15
ASN
310
A
ASN
311
n
16
ASN
311
A
LEU
312
n
17
LEU
312
A
ASN
313
n
18
ASN
313
A
GLU
314
n
19
GLU
314
A
LYS
315
n
20
LYS
315
A
ILE
316
n
21
ILE
316
A
LYS
317
n
22
LYS
317
A
LYS
318
n
23
LYS
318
A
ASP
319
n
24
ASP
319
A
GLU
320
n
25
GLU
320
A
LEU
321
n
26
LEU
321
A
LYS
322
n
27
LYS
322
A
LYS
323
n
28
LYS
323
A
SER
324
n
29
SER
324
A
LEU
325
n
30
LEU
325
A
HIS
326
n
31
HIS
326
A
ALA
327
n
32
ALA
327
A
ILE
328
n
33
ILE
328
A
PHE
329
n
34
PHE
329
A
SER
330
n
35
SER
330
A
ARG
331
n
36
ARG
331
A
PHE
332
n
37
PHE
332
A
GLY
333
n
38
GLY
333
A
GLN
334
n
39
GLN
334
A
ILE
335
n
40
ILE
335
A
LEU
336
n
41
LEU
336
A
ASP
337
n
42
ASP
337
A
ILE
338
n
43
ILE
338
A
LEU
339
n
44
LEU
339
A
VAL
340
n
45
VAL
340
A
SER
341
n
46
SER
341
A
ARG
342
n
47
ARG
342
A
SER
343
n
48
SER
343
A
LEU
344
n
49
LEU
344
A
LYS
345
n
50
LYS
345
A
MSE
346
n
51
MSE
346
A
ARG
347
n
52
ARG
347
A
GLY
348
n
53
GLY
348
A
GLN
349
n
54
GLN
349
A
ALA
350
n
55
ALA
350
A
PHE
351
n
56
PHE
351
A
VAL
352
n
57
VAL
352
A
ILE
353
n
58
ILE
353
A
PHE
354
n
59
PHE
354
A
LYS
355
n
60
LYS
355
A
GLU
356
n
61
GLU
356
A
VAL
357
n
62
VAL
357
A
SER
358
n
63
SER
358
A
SER
359
n
64
SER
359
A
ALA
360
n
65
ALA
360
A
THR
361
n
66
THR
361
A
ASN
362
n
67
ASN
362
A
ALA
363
n
68
ALA
363
A
LEU
364
n
69
LEU
364
A
ARG
365
n
70
ARG
365
A
SER
366
n
71
SER
366
A
MSE
367
n
72
MSE
367
A
GLN
368
n
73
GLN
368
A
GLY
369
n
74
GLY
369
A
PHE
370
n
75
PHE
370
A
PRO
371
n
76
PRO
371
A
PHE
372
n
77
PHE
372
A
TYR
373
n
78
TYR
373
A
ASP
374
n
79
ASP
374
A
LYS
375
n
80
LYS
375
A
PRO
376
n
81
PRO
376
A
MSE
377
n
82
MSE
377
A
ARG
378
n
83
ARG
378
A
ILE
379
n
84
ILE
379
A
GLN
380
n
85
GLN
380
A
TYR
381
n
86
TYR
381
A
ALA
382
n
87
ALA
382
A
LYS
383
n
88
LYS
383
A
THR
384
n
89
THR
384
A
ASP
385
n
90
ASP
385
A
SER
386
n
91
SER
386
A
ASP
387
n
92
ASP
387
A
ILE
388
n
93
ILE
388
A
ILE
389
n
94
ILE
389
A
ALA
390
n
95
ALA
390
A
LYS
391
n
96
LYS
391
A
MSE
392
n
97
MSE
392
A
n
98
393
A
n
1
396
B
n
2
397
B
n
3
398
B
n
4
399
B
n
5
400
B
THR
401
n
6
THR
401
B
ARG
402
n
7
ARG
402
B
PRO
403
n
8
PRO
403
B
ASN
404
n
9
ASN
404
B
HIS
405
n
10
HIS
405
B
THR
406
n
11
THR
406
B
ILE
407
n
12
ILE
407
B
TYR
408
n
13
TYR
408
B
ILE
409
n
14
ILE
409
B
ASN
410
n
15
ASN
410
B
ASN
411
n
16
ASN
411
B
LEU
412
n
17
LEU
412
B
ASN
413
n
18
ASN
413
B
GLU
414
n
19
GLU
414
B
LYS
415
n
20
LYS
415
B
ILE
416
n
21
ILE
416
B
LYS
417
n
22
LYS
417
B
LYS
418
n
23
LYS
418
B
ASP
419
n
24
ASP
419
B
GLU
420
n
25
GLU
420
B
LEU
421
n
26
LEU
421
B
LYS
422
n
27
LYS
422
B
LYS
423
n
28
LYS
423
B
SER
424
n
29
SER
424
B
LEU
425
n
30
LEU
425
B
HIS
426
n
31
HIS
426
B
ALA
427
n
32
ALA
427
B
ILE
428
n
33
ILE
428
B
PHE
429
n
34
PHE
429
B
SER
430
n
35
SER
430
B
ARG
431
n
36
ARG
431
B
PHE
432
n
37
PHE
432
B
GLY
433
n
38
GLY
433
B
GLN
434
n
39
GLN
434
B
ILE
435
n
40
ILE
435
B
LEU
436
n
41
LEU
436
B
ASP
437
n
42
ASP
437
B
ILE
438
n
43
ILE
438
B
LEU
439
n
44
LEU
439
B
VAL
440
n
45
VAL
440
B
SER
441
n
46
SER
441
B
ARG
442
n
47
ARG
442
B
SER
443
n
48
SER
443
B
LEU
444
n
49
LEU
444
B
LYS
445
n
50
LYS
445
B
MSE
446
n
51
MSE
446
B
ARG
447
n
52
ARG
447
B
GLY
448
n
53
GLY
448
B
GLN
449
n
54
GLN
449
B
ALA
450
n
55
ALA
450
B
PHE
451
n
56
PHE
451
B
VAL
452
n
57
VAL
452
B
ILE
453
n
58
ILE
453
B
PHE
454
n
59
PHE
454
B
LYS
455
n
60
LYS
455
B
GLU
456
n
61
GLU
456
B
VAL
457
n
62
VAL
457
B
SER
458
n
63
SER
458
B
SER
459
n
64
SER
459
B
ALA
460
n
65
ALA
460
B
THR
461
n
66
THR
461
B
ASN
462
n
67
ASN
462
B
ALA
463
n
68
ALA
463
B
LEU
464
n
69
LEU
464
B
ARG
465
n
70
ARG
465
B
SER
466
n
71
SER
466
B
MSE
467
n
72
MSE
467
B
GLN
468
n
73
GLN
468
B
GLY
469
n
74
GLY
469
B
PHE
470
n
75
PHE
470
B
PRO
471
n
76
PRO
471
B
PHE
472
n
77
PHE
472
B
TYR
473
n
78
TYR
473
B
ASP
474
n
79
ASP
474
B
LYS
475
n
80
LYS
475
B
PRO
476
n
81
PRO
476
B
MSE
477
n
82
MSE
477
B
ARG
478
n
83
ARG
478
B
ILE
479
n
84
ILE
479
B
GLN
480
n
85
GLN
480
B
TYR
481
n
86
TYR
481
B
ALA
482
n
87
ALA
482
B
LYS
483
n
88
LYS
483
B
THR
484
n
89
THR
484
B
ASP
485
n
90
ASP
485
B
SER
486
n
91
SER
486
B
ASP
487
n
92
ASP
487
B
ILE
488
n
93
ILE
488
B
ILE
489
n
94
ILE
489
B
ALA
490
n
95
ALA
490
B
LYS
491
n
96
LYS
491
B
n
97
492
B
n
98
493
B
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
D
U
170
B
OP2
U
70
1_555
D
MG
504
L
MG
MG
1_555
D
U
171
B
O4
U
71
1_555
96.8
C
GTP
1
GUANOSINE-5'-TRIPHOSPHATE
A
GTP
1
G
D
GTP
101
GUANOSINE-5'-TRIPHOSPHATE
B
GTP
1
G
A
MSE
346
SELENOMETHIONINE
C
MSE
51
MET
A
MSE
367
SELENOMETHIONINE
C
MSE
72
MET
A
MSE
377
SELENOMETHIONINE
C
MSE
82
MET
A
MSE
392
SELENOMETHIONINE
C
MSE
97
MET
B
MSE
446
SELENOMETHIONINE
D
MSE
51
MET
B
MSE
467
SELENOMETHIONINE
D
MSE
72
MET
B
MSE
477
SELENOMETHIONINE
D
MSE
82
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
337
C
N
ASP
42
A
O
ILE
353
C
O
ILE
58
A
O
ALA
350
C
O
ALA
55
A
N
ILE
309
C
N
ILE
14
A
N
TYR
308
C
N
TYR
13
A
O
GLN
380
C
O
GLN
85
B
N
ASP
437
D
N
ASP
42
B
O
ILE
453
D
O
ILE
58
B
O
ALA
450
D
O
ALA
55
B
N
ILE
409
D
N
ILE
14
B
N
TYR
408
D
N
TYR
13
B
O
GLN
480
D
O
GLN
85
B
N
PHE
472
D
N
PHE
77
B
O
LYS
475
D
O
LYS
80
1
A
CG
ARG
302
C
CG
ARG
7
1
Y
1
A
CD
ARG
302
C
CD
ARG
7
1
Y
1
A
NE
ARG
302
C
NE
ARG
7
1
Y
1
A
CZ
ARG
302
C
CZ
ARG
7
1
Y
1
A
NH1
ARG
302
C
NH1
ARG
7
1
Y
1
A
NH2
ARG
302
C
NH2
ARG
7
1
Y
1
A
CG
LYS
317
C
CG
LYS
22
1
Y
1
A
CD
LYS
317
C
CD
LYS
22
1
Y
1
A
CE
LYS
317
C
CE
LYS
22
1
Y
1
A
NZ
LYS
317
C
NZ
LYS
22
1
Y
1
A
CG
ASP
319
C
CG
ASP
24
1
Y
1
A
OD1
ASP
319
C
OD1
ASP
24
1
Y
1
A
OD2
ASP
319
C
OD2
ASP
24
1
Y
1
A
CG
LYS
323
C
CG
LYS
28
1
Y
1
A
CD
LYS
323
C
CD
LYS
28
1
Y
1
A
CE
LYS
323
C
CE
LYS
28
1
Y
1
A
NZ
LYS
323
C
NZ
LYS
28
1
Y
1
A
CG
LYS
345
C
CG
LYS
50
1
Y
1
A
CD
LYS
345
C
CD
LYS
50
1
Y
1
A
CE
LYS
345
C
CE
LYS
50
1
Y
1
A
NZ
LYS
345
C
NZ
LYS
50
1
Y
1
A
CG
ARG
365
C
CG
ARG
70
1
Y
1
A
CD
ARG
365
C
CD
ARG
70
1
Y
1
A
NE
ARG
365
C
NE
ARG
70
1
Y
1
A
CZ
ARG
365
C
CZ
ARG
70
1
Y
1
A
NH1
ARG
365
C
NH1
ARG
70
1
Y
1
A
NH2
ARG
365
C
NH2
ARG
70
1
Y
1
A
CG
LYS
391
C
CG
LYS
96
1
Y
1
A
CD
LYS
391
C
CD
LYS
96
1
Y
1
A
CE
LYS
391
C
CE
LYS
96
1
Y
1
A
NZ
LYS
391
C
NZ
LYS
96
1
Y
1
A
CG
MSE
392
C
CG
MSE
97
1
Y
1
A
SE
MSE
392
C
SE
MSE
97
1
Y
1
A
CE
MSE
392
C
CE
MSE
97
1
Y
1
B
OG1
THR
401
D
OG1
THR
6
1
Y
1
B
CG2
THR
401
D
CG2
THR
6
1
Y
1
B
CG
ARG
402
D
CG
ARG
7
1
Y
1
B
CD
ARG
402
D
CD
ARG
7
1
Y
1
B
NE
ARG
402
D
NE
ARG
7
1
Y
1
B
CZ
ARG
402
D
CZ
ARG
7
1
Y
1
B
NH1
ARG
402
D
NH1
ARG
7
1
Y
1
B
NH2
ARG
402
D
NH2
ARG
7
1
Y
1
B
CG
LYS
415
D
CG
LYS
20
1
Y
1
B
CD
LYS
415
D
CD
LYS
20
1
Y
1
B
CE
LYS
415
D
CE
LYS
20
1
Y
1
B
NZ
LYS
415
D
NZ
LYS
20
1
Y
1
B
CG
LYS
417
D
CG
LYS
22
1
Y
1
B
CD
LYS
417
D
CD
LYS
22
1
Y
1
B
CE
LYS
417
D
CE
LYS
22
1
Y
1
B
NZ
LYS
417
D
NZ
LYS
22
1
Y
1
B
CG
GLU
420
D
CG
GLU
25
1
Y
1
B
CD
GLU
420
D
CD
GLU
25
1
Y
1
B
OE1
GLU
420
D
OE1
GLU
25
1
Y
1
B
OE2
GLU
420
D
OE2
GLU
25
1
Y
1
B
CG
LYS
423
D
CG
LYS
28
1
Y
1
B
CD
LYS
423
D
CD
LYS
28
1
Y
1
B
CE
LYS
423
D
CE
LYS
28
1
Y
1
B
NZ
LYS
423
D
NZ
LYS
28
1
Y
1
B
CG
GLN
434
D
CG
GLN
39
1
Y
1
B
CD
GLN
434
D
CD
GLN
39
1
Y
1
B
OE1
GLN
434
D
OE1
GLN
39
1
Y
1
B
NE2
GLN
434
D
NE2
GLN
39
1
Y
1
B
CG
ARG
442
D
CG
ARG
47
1
Y
1
B
CD
ARG
442
D
CD
ARG
47
1
Y
1
B
NE
ARG
442
D
NE
ARG
47
1
Y
1
B
CZ
ARG
442
D
CZ
ARG
47
1
Y
1
B
NH1
ARG
442
D
NH1
ARG
47
1
Y
1
B
NH2
ARG
442
D
NH2
ARG
47
1
Y
1
B
CG
GLU
456
D
CG
GLU
61
1
Y
1
B
CD
GLU
456
D
CD
GLU
61
1
Y
1
B
OE1
GLU
456
D
OE1
GLU
61
1
Y
1
B
OE2
GLU
456
D
OE2
GLU
61
1
Y
1
B
CG
LYS
491
D
CG
LYS
96
1
Y
1
B
CD
LYS
491
D
CD
LYS
96
1
Y
1
B
CE
LYS
491
D
CE
LYS
96
1
Y
1
B
NZ
LYS
491
D
NZ
LYS
96
1
Y
1
A
MSE
296
C
MSE
1
1
Y
1
A
ALA
297
C
ALA
2
1
Y
1
A
VAL
298
C
VAL
3
1
Y
1
A
PRO
299
C
PRO
4
1
Y
1
A
GLU
300
C
GLU
5
1
Y
1
A
THR
301
C
THR
6
1
Y
1
A
LYS
393
C
LYS
98
1
Y
1
B
MSE
396
D
MSE
1
1
Y
1
B
ALA
397
D
ALA
2
1
Y
1
B
VAL
398
D
VAL
3
1
Y
1
B
PRO
399
D
PRO
4
1
Y
1
B
GLU
400
D
GLU
5
1
Y
1
B
MSE
492
D
MSE
97
1
Y
1
B
LYS
493
D
LYS
98
1
Y
1
C
C3'
A
9
PLANAR
1
D
G
166
0.052
SIDE CHAIN
1
-20.55
1.20
119.70
99.15
C
C
C
C3'
O3'
P
GTP
GTP
G
1
1
2
Y
1
12.86
1.60
113.70
126.56
C
C
C
C2'
C3'
O3'
A
A
A
9
9
9
N
1
6.08
1.00
102.60
108.68
C
C
C
C4'
C3'
C2'
A
A
A
9
9
9
N
1
8.03
1.30
114.00
122.03
C
C
C
N1
C1'
C2'
U
U
U
32
32
32
N
1
14.25
1.60
113.70
127.95
C
C
C
C2'
C3'
O3'
U
U
U
53
53
53
N
1
-22.08
1.90
104.00
81.92
D
D
D
O3'
P
O5'
GTP
G
G
101
102
102
Y
1
9.75
1.10
110.50
120.25
D
D
D
O3'
P
OP1
GTP
G
G
101
102
102
Y
1
11.34
1.50
119.30
130.64
A
A
A
C
N
CA
ARG
PRO
PRO
302
303
303
Y
1
A
PRO
303
-42.19
154.84
1
A
ASN
304
-174.00
137.97
1
A
ASN
311
74.07
40.71
1
A
LYS
318
-52.17
-73.65
1
A
ASP
337
172.21
161.10
1
A
GLN
368
-42.54
108.32
1
A
ASP
374
73.85
40.12
1
A
TYR
381
-49.25
166.20
1
A
ASP
387
-18.77
-63.37
1
B
ARG
402
60.05
96.07
1
B
ASN
411
87.14
52.06
1
B
ASN
413
-42.38
103.90
1
B
LYS
418
-21.28
-70.92
1
B
ASP
437
177.78
155.44
1
B
SER
443
-55.83
-178.12
1
B
ASN
462
-43.62
-74.71
1
B
LEU
464
-59.06
-78.09
1
B
ARG
465
-28.95
-59.59
1
B
SER
466
-76.59
-72.01
1
B
PHE
470
-35.81
142.79
1
B
PHE
472
-167.07
93.63
1
B
ASP
474
79.69
-11.12
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
ion.param
ion.top
water_rep.param
water.top
gtn.param
gtn.top
100.7
-40.72
0.00
-1.00
35.40
0.00
5.32
0.303
0.008
0.252
0.252
0.252
3.00
28.75
1355
13610
10.0
80.8
RANDOM
185743.74
0.000000
1
RESTRAINED
THROUGHOUT
0.0
FOURIER SYNTHESIS
PDB entry 3CUL
Engh & Huber
FLAT MODEL
25
0.3
0.51
0.39
5.00
0.53
0.52
3.00
28.75
0
5364
11
3946
1407
0.008
1.3
12.4
0.00
1.93
1.50
3.29
2.00
2.34
2.00
3.60
2.50
0.41
0.038
0.379
3.19
114
954
6
10.7
38.9
3.0
30
3CUN
13610
1.9
0.87
0.87
1
21.1
6.4
80.8
0.501
3.0
3.1
1.9
1355
0.501
2.9
51.6
refinement
CNS
1.1
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Aminoacyl-tRNA synthetase ribozyme
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
3
N
N
5
N
N
A
LYS
317
C
LYS
22
HELX_P
A
SER
330
C
SER
35
1
1
14
A
ARG
331
C
ARG
36
HELX_P
A
GLY
333
C
GLY
38
5
2
3
A
GLU
356
C
GLU
61
HELX_P
A
GLN
368
C
GLN
73
1
3
13
A
SER
386
C
SER
91
HELX_P
A
MSE
392
C
MSE
97
1
4
7
B
LYS
417
D
LYS
22
HELX_P
B
SER
430
D
SER
35
1
5
14
B
GLU
456
D
GLU
61
HELX_P
B
GLN
468
D
GLN
73
1
6
13
B
SER
486
D
SER
91
HELX_P
B
LYS
491
D
LYS
96
1
7
6
covale
1.586
both
C
GTP
1
A
O3'
GTP
1
1_555
C
G
2
A
P
G
2
1_555
covale
1.612
both
D
GTP
101
B
O3'
GTP
1
1_555
D
G
102
B
P
G
2
1_555
covale
1.322
both
A
LYS
345
C
C
LYS
50
1_555
A
MSE
346
C
N
MSE
51
1_555
covale
1.328
both
A
MSE
346
C
C
MSE
51
1_555
A
ARG
347
C
N
ARG
52
1_555
covale
1.329
both
A
SER
366
C
C
SER
71
1_555
A
MSE
367
C
N
MSE
72
1_555
covale
1.325
both
A
MSE
367
C
C
MSE
72
1_555
A
GLN
368
C
N
GLN
73
1_555
covale
1.320
both
A
PRO
376
C
C
PRO
81
1_555
A
MSE
377
C
N
MSE
82
1_555
covale
1.321
both
A
MSE
377
C
C
MSE
82
1_555
A
ARG
378
C
N
ARG
83
1_555
covale
1.333
both
A
LYS
391
C
C
LYS
96
1_555
A
MSE
392
C
N
MSE
97
1_555
covale
1.334
both
B
LYS
445
D
C
LYS
50
1_555
B
MSE
446
D
N
MSE
51
1_555
covale
1.324
both
B
MSE
446
D
C
MSE
51
1_555
B
ARG
447
D
N
ARG
52
1_555
covale
1.328
both
B
SER
466
D
C
SER
71
1_555
B
MSE
467
D
N
MSE
72
1_555
covale
1.323
both
B
MSE
467
D
C
MSE
72
1_555
B
GLN
468
D
N
GLN
73
1_555
covale
1.319
both
B
PRO
476
D
C
PRO
81
1_555
B
MSE
477
D
N
MSE
82
1_555
covale
1.326
both
B
MSE
477
D
C
MSE
82
1_555
B
ARG
478
D
N
ARG
83
1_555
metalc
1.958
C
GTP
1
A
O2B
GTP
1
1_555
C
MG
507
H
MG
MG
1_555
metalc
2.796
C
U
17
A
N1
U
17
1_555
C
K
511
J
K
K
1_555
metalc
2.094
D
C
129
B
OP2
C
29
1_555
D
MG
513
N
MG
MG
1_555
metalc
2.269
D
U
170
B
OP2
U
70
1_555
D
MG
504
L
MG
MG
1_555
metalc
1.972
D
U
171
B
O4
U
71
1_555
D
MG
504
L
MG
MG
1_555
hydrog
WATSON-CRICK
C
GTP
1
A
N1
GTP
1
1_555
C
C
19
A
N3
C
19
1_555
hydrog
WATSON-CRICK
C
GTP
1
A
N2
GTP
1
1_555
C
C
19
A
O2
C
19
1_555
hydrog
WATSON-CRICK
C
GTP
1
A
O6
GTP
1
1_555
C
C
19
A
N4
C
19
1_555
hydrog
TYPE_28_PAIR
C
G
2
A
N1
G
2
1_555
C
U
17
A
O2
U
17
1_555
hydrog
TYPE_28_PAIR
C
G
2
A
O6
G
2
1_555
C
U
17
A
N3
U
17
1_555
hydrog
WATSON-CRICK
C
A
3
A
N1
A
3
1_555
C
U
16
A
N3
U
16
1_555
hydrog
WATSON-CRICK
C
A
3
A
N6
A
3
1_555
C
U
16
A
O4
U
16
1_555
hydrog
WATSON-CRICK
C
U
4
A
N3
U
4
1_555
C
A
15
A
N1
A
15
1_555
hydrog
WATSON-CRICK
C
U
4
A
O4
U
4
1_555
C
A
15
A
N6
A
15
1_555
hydrog
WATSON-CRICK
C
G
5
A
N1
G
5
1_555
C
C
14
A
N3
C
14
1_555
hydrog
WATSON-CRICK
C
G
5
A
N2
G
5
1_555
C
C
14
A
O2
C
14
1_555
hydrog
WATSON-CRICK
C
G
5
A
O6
G
5
1_555
C
C
14
A
N4
C
14
1_555
hydrog
WATSON-CRICK
C
G
6
A
N1
G
6
1_555
C
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
C
G
6
A
N2
G
6
1_555
C
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
C
G
6
A
O6
G
6
1_555
C
C
13
A
N4
C
13
1_555
hydrog
WATSON-CRICK
C
C
7
A
N3
C
7
1_555
C
G
12
A
N1
G
12
1_555
hydrog
WATSON-CRICK
C
C
7
A
N4
C
7
1_555
C
G
12
A
O6
G
12
1_555
hydrog
WATSON-CRICK
C
C
7
A
O2
C
7
1_555
C
G
12
A
N2
G
12
1_555
hydrog
U-C MISPAIR
C
U
17
A
O2
U
17
1_555
C
C
19
A
N4
C
19
1_555
hydrog
WATSON-CRICK
C
C
20
A
N3
C
20
1_555
C
G
51
A
N1
G
51
1_555
hydrog
WATSON-CRICK
C
C
20
A
N4
C
20
1_555
C
G
51
A
O6
G
51
1_555
hydrog
WATSON-CRICK
C
C
20
A
O2
C
20
1_555
C
G
51
A
N2
G
51
1_555
hydrog
WATSON-CRICK
C
G
21
A
N1
G
21
1_555
C
C
50
A
N3
C
50
1_555
hydrog
WATSON-CRICK
C
G
21
A
N2
G
21
1_555
C
C
50
A
O2
C
50
1_555
hydrog
WATSON-CRICK
C
G
21
A
O6
G
21
1_555
C
C
50
A
N4
C
50
1_555
hydrog
G-A MISPAIR
C
G
21
A
N2
G
21
1_555
C
A
54
A
N3
A
54
1_555
hydrog
WATSON-CRICK
C
C
22
A
N3
C
22
1_555
C
G
49
A
N1
G
49
1_555
hydrog
WATSON-CRICK
C
C
22
A
N4
C
22
1_555
C
G
49
A
O6
G
49
1_555
hydrog
WATSON-CRICK
C
C
22
A
O2
C
22
1_555
C
G
49
A
N2
G
49
1_555
hydrog
TYPE_8_PAIR
C
A
23
A
N1
A
23
1_555
C
G
48
A
N1
G
48
1_555
hydrog
TYPE_8_PAIR
C
A
23
A
N6
A
23
1_555
C
G
48
A
O6
G
48
1_555
hydrog
G-U MISPAIR
C
G
24
A
N1
G
24
1_555
C
U
47
A
O4
U
47
1_555
hydrog
TYPE_28_PAIR
C
G
25
A
N1
G
25
1_555
C
U
44
A
O2
U
44
1_555
hydrog
TYPE_28_PAIR
C
G
25
A
O6
G
25
1_555
C
U
44
A
N3
U
44
1_555
hydrog
WATSON-CRICK
C
C
26
A
N3
C
26
1_555
C
G
43
A
N1
G
43
1_555
hydrog
WATSON-CRICK
C
C
26
A
N4
C
26
1_555
C
G
43
A
O6
G
43
1_555
hydrog
WATSON-CRICK
C
C
26
A
O2
C
26
1_555
C
G
43
A
N2
G
43
1_555
hydrog
WATSON-CRICK
C
C
27
A
N3
C
27
1_555
C
G
42
A
N1
G
42
1_555
hydrog
WATSON-CRICK
C
C
27
A
N4
C
27
1_555
C
G
42
A
O6
G
42
1_555
hydrog
WATSON-CRICK
C
C
27
A
O2
C
27
1_555
C
G
42
A
N2
G
42
1_555
hydrog
WATSON-CRICK
C
C
28
A
N3
C
28
1_555
C
G
41
A
N1
G
41
1_555
hydrog
WATSON-CRICK
C
C
28
A
N4
C
28
1_555
C
G
41
A
O6
G
41
1_555
hydrog
WATSON-CRICK
C
C
28
A
O2
C
28
1_555
C
G
41
A
N2
G
41
1_555
hydrog
WATSON-CRICK
C
C
29
A
N3
C
29
1_555
C
G
40
A
N1
G
40
1_555
hydrog
WATSON-CRICK
C
C
29
A
N4
C
29
1_555
C
G
40
A
O6
G
40
1_555
hydrog
WATSON-CRICK
C
C
29
A
O2
C
29
1_555
C
G
40
A
N2
G
40
1_555
hydrog
WATSON-CRICK
C
G
55
A
N1
G
55
1_555
C
C
91
A
N3
C
91
1_555
hydrog
WATSON-CRICK
C
G
55
A
N2
G
55
1_555
C
C
91
A
O2
C
91
1_555
hydrog
WATSON-CRICK
C
G
55
A
O6
G
55
1_555
C
C
91
A
N4
C
91
1_555
hydrog
WATSON-CRICK
C
G
56
A
N1
G
56
1_555
C
C
90
A
N3
C
90
1_555
hydrog
WATSON-CRICK
C
G
56
A
N2
G
56
1_555
C
C
90
A
O2
C
90
1_555
hydrog
WATSON-CRICK
C
G
56
A
O6
G
56
1_555
C
C
90
A
N4
C
90
1_555
hydrog
TYPE_8_PAIR
C
G
58
A
N1
G
58
1_555
C
A
88
A
N1
A
88
1_555
hydrog
TYPE_8_PAIR
C
G
58
A
O6
G
58
1_555
C
A
88
A
N6
A
88
1_555
hydrog
WATSON-CRICK
C
G
59
A
N1
G
59
1_555
C
C
87
A
N3
C
87
1_555
hydrog
WATSON-CRICK
C
G
59
A
N2
G
59
1_555
C
C
87
A
O2
C
87
1_555
hydrog
WATSON-CRICK
C
G
59
A
O6
G
59
1_555
C
C
87
A
N4
C
87
1_555
hydrog
G-C PAIR
C
G
61
A
O6
G
61
1_555
C
C
85
A
N4
C
85
1_555
hydrog
WATSON-CRICK
C
G
62
A
N1
G
62
1_555
C
C
84
A
N3
C
84
1_555
hydrog
WATSON-CRICK
C
G
62
A
N2
G
62
1_555
C
C
84
A
O2
C
84
1_555
hydrog
WATSON-CRICK
C
G
62
A
O6
G
62
1_555
C
C
84
A
N4
C
84
1_555
hydrog
WATSON-CRICK
C
U
63
A
N3
U
63
1_555
C
A
83
A
N1
A
83
1_555
hydrog
WATSON-CRICK
C
U
63
A
O4
U
63
1_555
C
A
83
A
N6
A
83
1_555
hydrog
WATSON-CRICK
C
A
64
A
N1
A
64
1_555
C
U
82
A
N3
U
82
1_555
hydrog
WATSON-CRICK
C
A
64
A
N6
A
64
1_555
C
U
82
A
O4
U
82
1_555
hydrog
WATSON-CRICK
C
C
65
A
N3
C
65
1_555
C
G
81
A
N1
G
81
1_555
hydrog
WATSON-CRICK
C
C
65
A
N4
C
65
1_555
C
G
81
A
O6
G
81
1_555
hydrog
WATSON-CRICK
C
C
65
A
O2
C
65
1_555
C
G
81
A
N2
G
81
1_555
hydrog
G-C PAIR
C
G
66
A
N1
G
66
1_555
C
C
80
A
N3
C
80
1_555
hydrog
WATSON-CRICK
C
A
67
A
N1
A
67
1_555
C
U
79
A
N3
U
79
1_555
hydrog
WATSON-CRICK
C
A
67
A
N6
A
67
1_555
C
U
79
A
O4
U
79
1_555
hydrog
WATSON-CRICK
C
G
68
A
N1
G
68
1_555
C
C
78
A
N3
C
78
1_555
hydrog
WATSON-CRICK
C
G
68
A
N2
G
68
1_555
C
C
78
A
O2
C
78
1_555
hydrog
WATSON-CRICK
C
G
68
A
O6
G
68
1_555
C
C
78
A
N4
C
78
1_555
hydrog
WATSON-CRICK
C
G
69
A
N1
G
69
1_555
C
C
77
A
N3
C
77
1_555
hydrog
WATSON-CRICK
C
G
69
A
N2
G
69
1_555
C
C
77
A
O2
C
77
1_555
hydrog
WATSON-CRICK
C
G
69
A
O6
G
69
1_555
C
C
77
A
N4
C
77
1_555
hydrog
TYPE_16_PAIR
C
U
70
A
N3
U
70
1_555
C
U
76
A
O4
U
76
1_555
hydrog
TYPE_16_PAIR
C
U
70
A
O2
U
70
1_555
C
U
76
A
N3
U
76
1_555
hydrog
GTP-C PAIR
D
GTP
101
B
N1
GTP
1
1_555
D
C
119
B
N3
C
19
1_555
hydrog
WATSON-CRICK
D
GTP
101
B
N1
GTP
1
1_555
D
C
120
B
N3
C
20
1_555
hydrog
WATSON-CRICK
D
GTP
101
B
N2
GTP
1
1_555
D
C
120
B
O2
C
20
1_555
hydrog
WATSON-CRICK
D
GTP
101
B
O6
GTP
1
1_555
D
C
120
B
N4
C
20
1_555
hydrog
TYPE_28_PAIR
D
G
102
B
N1
G
2
1_555
D
U
117
B
O2
U
17
1_555
hydrog
TYPE_28_PAIR
D
G
102
B
O6
G
2
1_555
D
U
117
B
N3
U
17
1_555
hydrog
WATSON-CRICK
D
A
103
B
N1
A
3
1_555
D
U
116
B
N3
U
16
1_555
hydrog
WATSON-CRICK
D
A
103
B
N6
A
3
1_555
D
U
116
B
O4
U
16
1_555
hydrog
WATSON-CRICK
D
U
104
B
N3
U
4
1_555
D
A
115
B
N1
A
15
1_555
hydrog
WATSON-CRICK
D
U
104
B
O4
U
4
1_555
D
A
115
B
N6
A
15
1_555
hydrog
WATSON-CRICK
D
G
105
B
N1
G
5
1_555
D
C
114
B
N3
C
14
1_555
hydrog
WATSON-CRICK
D
G
105
B
N2
G
5
1_555
D
C
114
B
O2
C
14
1_555
hydrog
WATSON-CRICK
D
G
105
B
O6
G
5
1_555
D
C
114
B
N4
C
14
1_555
hydrog
WATSON-CRICK
D
G
106
B
N1
G
6
1_555
D
C
113
B
N3
C
13
1_555
hydrog
WATSON-CRICK
D
G
106
B
N2
G
6
1_555
D
C
113
B
O2
C
13
1_555
hydrog
WATSON-CRICK
D
G
106
B
O6
G
6
1_555
D
C
113
B
N4
C
13
1_555
hydrog
WATSON-CRICK
D
C
107
B
N3
C
7
1_555
D
G
112
B
N1
G
12
1_555
hydrog
WATSON-CRICK
D
C
107
B
N4
C
7
1_555
D
G
112
B
O6
G
12
1_555
hydrog
WATSON-CRICK
D
C
107
B
O2
C
7
1_555
D
G
112
B
N2
G
12
1_555
hydrog
G-A MISPAIR
D
G
108
B
N2
G
8
1_555
D
A
111
B
N7
A
11
1_555
hydrog
WATSON-CRICK
D
C
120
B
N3
C
20
1_555
D
G
151
B
N1
G
51
1_555
hydrog
WATSON-CRICK
D
C
120
B
N4
C
20
1_555
D
G
151
B
O6
G
51
1_555
hydrog
WATSON-CRICK
D
C
120
B
O2
C
20
1_555
D
G
151
B
N2
G
51
1_555
hydrog
G-C PAIR
D
G
121
B
N2
G
21
1_555
D
C
150
B
O2
C
50
1_555
hydrog
C-G PAIR
D
C
122
B
N4
C
22
1_555
D
G
149
B
O6
G
49
1_555
hydrog
G-U MISPAIR
D
G
124
B
N1
G
24
1_555
D
U
147
B
O4
U
47
1_555
hydrog
TYPE_28_PAIR
D
G
125
B
N1
G
25
1_555
D
U
144
B
O2
U
44
1_555
hydrog
TYPE_28_PAIR
D
G
125
B
O6
G
25
1_555
D
U
144
B
N3
U
44
1_555
hydrog
C-G PAIR
D
C
126
B
N4
C
26
1_555
D
G
143
B
O6
G
43
1_555
hydrog
WATSON-CRICK
D
C
127
B
N3
C
27
1_555
D
G
142
B
N1
G
42
1_555
hydrog
WATSON-CRICK
D
C
127
B
N4
C
27
1_555
D
G
142
B
O6
G
42
1_555
hydrog
WATSON-CRICK
D
C
127
B
O2
C
27
1_555
D
G
142
B
N2
G
42
1_555
hydrog
WATSON-CRICK
D
C
128
B
N3
C
28
1_555
D
G
141
B
N1
G
41
1_555
hydrog
WATSON-CRICK
D
C
128
B
N4
C
28
1_555
D
G
141
B
O6
G
41
1_555
hydrog
WATSON-CRICK
D
C
128
B
O2
C
28
1_555
D
G
141
B
N2
G
41
1_555
hydrog
C-G PAIR
D
C
129
B
O2
C
29
1_555
D
G
140
B
N1
G
40
1_555
hydrog
G-C PAIR
D
G
155
B
N2
G
55
1_555
D
C
191
B
O2
C
91
1_555
hydrog
G-C PAIR
D
G
156
B
N1
G
56
1_555
D
C
191
B
O2
C
91
1_555
hydrog
G-G MISPAIR
D
G
158
B
N2
G
58
1_555
D
G
159
B
O6
G
59
1_555
hydrog
G-A MISPAIR
D
G
158
B
N2
G
58
1_555
D
A
188
B
N1
A
88
1_555
hydrog
G-C PAIR
D
G
159
B
N1
G
59
1_555
D
C
187
B
O2
C
87
1_555
hydrog
U-G MISPAIR
D
U
160
B
O2
U
60
1_555
D
G
186
B
N2
G
86
1_555
hydrog
WATSON-CRICK
D
G
161
B
N1
G
61
1_555
D
C
185
B
N3
C
85
1_555
hydrog
WATSON-CRICK
D
G
161
B
N2
G
61
1_555
D
C
185
B
O2
C
85
1_555
hydrog
WATSON-CRICK
D
G
161
B
O6
G
61
1_555
D
C
185
B
N4
C
85
1_555
hydrog
WATSON-CRICK
D
G
162
B
N1
G
62
1_555
D
C
184
B
N3
C
84
1_555
hydrog
WATSON-CRICK
D
G
162
B
N2
G
62
1_555
D
C
184
B
O2
C
84
1_555
hydrog
WATSON-CRICK
D
G
162
B
O6
G
62
1_555
D
C
184
B
N4
C
84
1_555
hydrog
WATSON-CRICK
D
U
163
B
N3
U
63
1_555
D
A
183
B
N1
A
83
1_555
hydrog
WATSON-CRICK
D
U
163
B
O4
U
63
1_555
D
A
183
B
N6
A
83
1_555
hydrog
WATSON-CRICK
D
A
164
B
N1
A
64
1_555
D
U
182
B
N3
U
82
1_555
hydrog
WATSON-CRICK
D
A
164
B
N6
A
64
1_555
D
U
182
B
O4
U
82
1_555
hydrog
WATSON-CRICK
D
C
165
B
N3
C
65
1_555
D
G
181
B
N1
G
81
1_555
hydrog
WATSON-CRICK
D
C
165
B
N4
C
65
1_555
D
G
181
B
O6
G
81
1_555
hydrog
WATSON-CRICK
D
C
165
B
O2
C
65
1_555
D
G
181
B
N2
G
81
1_555
hydrog
WATSON-CRICK
D
G
166
B
N1
G
66
1_555
D
C
180
B
N3
C
80
1_555
hydrog
WATSON-CRICK
D
G
166
B
N2
G
66
1_555
D
C
180
B
O2
C
80
1_555
hydrog
WATSON-CRICK
D
G
166
B
O6
G
66
1_555
D
C
180
B
N4
C
80
1_555
hydrog
WATSON-CRICK
D
A
167
B
N1
A
67
1_555
D
U
179
B
N3
U
79
1_555
hydrog
WATSON-CRICK
D
A
167
B
N6
A
67
1_555
D
U
179
B
O4
U
79
1_555
hydrog
WATSON-CRICK
D
G
168
B
N1
G
68
1_555
D
C
178
B
N3
C
78
1_555
hydrog
WATSON-CRICK
D
G
168
B
N2
G
68
1_555
D
C
178
B
O2
C
78
1_555
hydrog
WATSON-CRICK
D
G
168
B
O6
G
68
1_555
D
C
178
B
N4
C
78
1_555
hydrog
WATSON-CRICK
D
G
169
B
N1
G
69
1_555
D
C
177
B
N3
C
77
1_555
hydrog
WATSON-CRICK
D
G
169
B
N2
G
69
1_555
D
C
177
B
O2
C
77
1_555
hydrog
WATSON-CRICK
D
G
169
B
O6
G
69
1_555
D
C
177
B
N4
C
77
1_555
hydrog
TYPE_16_PAIR
D
U
170
B
N3
U
70
1_555
D
U
176
B
O4
U
76
1_555
hydrog
TYPE_16_PAIR
D
U
170
B
O2
U
70
1_555
D
U
176
B
N3
U
76
1_555
RNA/RNA binding
ARS ribozyme catalytic RNA, RNA-RNA binding COMPLEX
SNRPA_HUMAN
UNP
2
1
P09012
MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK
PMRIQYAKTDSDIIAKMK
3CUN
PDB
1
3CUN
GGAUGGCGAAAGCCAUUUCCGCAGGCCCCAUUGCACUCCGGGGUAUUGGCGUUAGGUGGUGGUACGAGGUUCGAAUCCUC
GUACCGCAGCCA
1
98
3CUN
301
393
P09012
A
1
6
98
1
98
3CUN
400
493
P09012
B
1
5
98
1
92
3CUN
1
92
3CUN
C
2
1
92
101
192
3CUN
101
192
3CUN
D
2
1
92
1
TYR
engineered mutation
HIS
326
3CUN
A
P09012
UNP
31
31
1
GLN
engineered mutation
ARG
331
3CUN
A
P09012
UNP
36
36
2
TYR
engineered mutation
HIS
426
3CUN
B
P09012
UNP
31
31
2
GLN
engineered mutation
ARG
431
3CUN
B
P09012
UNP
36
36
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
335
C
ILE
40
A
VAL
340
C
VAL
45
A
ALA
350
C
ALA
55
A
PHE
354
C
PHE
59
A
THR
306
C
THR
11
A
ASN
310
C
ASN
15
A
ARG
378
C
ARG
83
A
TYR
381
C
TYR
86
B
ILE
435
D
ILE
40
B
LEU
439
D
LEU
44
B
GLN
449
D
GLN
54
B
PHE
454
D
PHE
59
B
THR
406
D
THR
11
B
ASN
410
D
ASN
15
B
ARG
478
D
ARG
83
B
TYR
481
D
TYR
86
B
PRO
471
D
PRO
76
B
PHE
472
D
PHE
77
B
LYS
475
D
LYS
80
B
PRO
476
D
PRO
81
BINDING SITE FOR RESIDUE CO B 514
B
CO
514
Software
2
B
HIS
426
D
HIS
31
2
1_555
B
ILE
435
D
ILE
40
2
1_555
5
C 1 2 1