0.013260
0.000000
0.000992
0.000000
0.009879
0.000000
0.000000
0.000000
0.009733
0.00000
0.00000
0.00000
Bowman, B.R.
Lee, S.
Wang, S.
Verdine, G.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
94.28
90.00
75.413
101.229
103.032
C10 H14 N5 O8 P
363.221
n
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
N
N
16
N
C
N
17
N
C
N
18
N
O
N
19
N
N
N
20
N
C
N
21
N
N
N
22
N
N
N
23
N
C
N
24
N
O
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
O
N
127
N
P
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
C
N
132
R
C
N
133
N
O
N
134
S
C
N
135
N
O
N
136
N
C
N
137
R
C
Y
138
N
N
Y
139
N
C
Y
140
N
N
Y
141
N
C
Y
142
N
C
N
143
N
N
Y
144
N
N
Y
145
N
C
Y
146
N
N
Y
147
N
C
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
O
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
C
N
168
R
C
N
169
N
O
N
170
S
C
N
171
N
O
N
172
N
C
N
173
R
C
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
Y
208
N
N
Y
209
N
C
Y
210
N
N
Y
211
N
C
N
212
N
C
N
213
N
O
N
214
N
N
N
215
N
C
N
216
N
N
N
217
N
N
Y
218
N
C
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
P
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
C
N
239
R
C
N
240
N
O
N
241
S
C
N
242
N
O
N
243
N
C
N
244
R
C
N
245
N
N
N
246
N
C
N
247
N
O
N
248
N
N
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
N
Y
325
N
C
Y
326
N
C
Y
327
N
N
N
328
N
O
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
S
C
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
N
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
S
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
N
459
N
C
N
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
N
C
N
476
N
O
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
R
C
N
490
N
O
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
N
N
503
S
C
N
504
N
C
N
505
N
O
N
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
N
Y
511
N
C
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
N
N
530
S
C
N
531
N
C
N
532
N
O
N
533
N
C
Y
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
N
540
N
O
N
541
N
O
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
N
N
554
S
C
N
555
N
C
N
556
N
O
N
557
N
C
N
558
N
C
N
559
N
C
N
560
N
O
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
sing
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
doub
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
doub
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
doub
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
Y
506
N
doub
Y
507
N
sing
Y
508
N
sing
N
509
N
sing
Y
510
N
doub
Y
511
N
sing
Y
512
N
sing
N
513
N
sing
Y
514
N
sing
Y
515
N
doub
N
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
doub
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
Y
534
N
doub
Y
535
N
sing
Y
536
N
sing
N
537
N
sing
Y
538
N
doub
N
539
N
sing
Y
540
N
doub
N
541
N
sing
Y
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
UK
Structure
STRUE6
2005
0969-2126
16
1166
1174
10.1016/j.str.2008.04.012
18682218
Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA.
2008
10.2210/pdb3cvt/pdb
pdb_00003cvt
100
1
1
SINGLE WAVELENGTH
x-ray
1
x-ray
1
0.979
1.0
24-ID-C
APS
0.979
SYNCHROTRON
APS BEAMLINE 24-ID-C
31425.236
DNA-3-methyladenine glycosylase 2
3.2.2.21
4
man
polymer
8oxoGuanine containing DNA
3703.417
DNA (5'-D(*DGP*DAP*DCP*DAP*DTP*(8OG)P*DAP*DGP*DTP*DGP*DCP*DC)-3')
2
syn
polymer
3638.379
DNA (5'-D(*DGP*DGP*DCP*DAP*DCP*DTP*DCP*DAP*DTP*DGP*DTP*DC)-3')
2
syn
polymer
18.015
water
29
nat
water
DNA-3-methyladenine glycosylase II, 3-methyladenine-DNA glycosylase II, inducible, TAG II, DNA-3-methyladenine glycosidase II
no
no
MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSR
LFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQR
LAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL
IKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSR
LFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQR
LAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL
IKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
A,B,C,D
polypeptide(L)
no
yes
(DG)(DA)(DC)(DA)(DT)(8OG)(DA)(DG)(DT)(DG)(DC)(DC)
GACATGAGTGCC
E,G
polydeoxyribonucleotide
no
no
(DG)(DG)(DC)(DA)(DC)(DT)(DC)(DA)(DT)(DG)(DT)(DC)
GGCACTCATGTC
F,H
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
strain K12
sample
alkA, aidA
562
Escherichia coli
562
Escherichia coli
BL21(DE3)
plasmid
pET30
1
2.79
55.97
hanging drop vapor diffusion
8.0
PEG4000, NaCl, Na-HEPES, MgCl2, ethylene glycol, pH 8.0, hanging drop vapor diffusion, temperature 295K
295
PEG4000
1
NaCl
1
Na-HEPES
1
MgCl2
1
ethylene glycol
1
PEG4000
2
NaCl
2
Na-HEPES
2
MgCl2
2
ethylene glycol
2
-5.551
1
19
E
1
F
25
-1.662
E_DG1:DC25_F
1
-15.337
-0.148
0.113
-0.001
-3.341
1
20
E
2
F
24
-7.730
E_DA2:DT24_F
2
0.680
0.462
0.833
0.055
11.713
1
19
E
3
F
23
-1.912
E_DC3:DG23_F
3
-3.473
0.185
0.345
-0.028
15.293
1
20
E
4
F
22
0.781
E_DA4:DT22_F
4
-20.808
0.335
0.774
-0.109
12.175
1
20
E
5
F
21
3.610
E_DT5:DA21_F
5
-20.568
-0.096
0.230
-0.106
18.485
1
19
E
6
F
20
7.370
E_8OG6:DC20_F
6
0.035
1.401
1.634
-0.245
-5.958
1
20
E
7
F
19
5.136
E_DA7:DT19_F
7
-20.889
0.584
0.655
-0.245
16.372
1
19
E
8
F
18
-1.301
E_DG8:DC18_F
8
-7.020
0.088
0.032
0.059
20.136
1
20
E
9
F
17
-6.878
E_DT9:DA17_F
9
-16.904
-0.054
-0.707
0.046
6.728
1
19
E
10
F
16
2.313
E_DG10:DC16_F
10
-5.182
-0.364
-0.958
-0.307
15.183
1
19
E
11
F
15
-0.553
E_DC11:DG15_F
11
-15.424
0.270
-0.703
-0.139
-30.483
1
19
E
12
F
14
1.077
E_DC12:DG14_F
12
33.316
-0.157
0.586
0.131
-4.544
1
19
G
1
H
25
-2.606
G_DG1:DC25_H
13
-1.286
0.130
-0.088
-0.006
-3.707
1
20
G
2
H
24
1.252
G_DA2:DT24_H
14
-1.366
-0.153
-0.095
-0.286
9.855
1
19
G
3
H
23
2.769
G_DC3:DG23_H
15
-6.089
0.404
-0.365
-0.169
0.619
1
20
G
4
H
22
-0.841
G_DA4:DT22_H
16
-3.491
-0.110
0.258
-0.277
14.506
1
20
G
5
H
21
-8.283
G_DT5:DA21_H
17
4.034
-0.343
-0.596
0.104
-0.558
1
19
G
6
H
20
-2.179
G_8OG6:DC20_H
18
0.173
-0.839
-0.365
-0.542
-1.294
1
20
G
7
H
19
6.136
G_DA7:DT19_H
19
-7.895
0.085
0.159
-0.125
-7.164
1
19
G
8
H
18
4.327
G_DG8:DC18_H
20
-11.202
-0.227
-0.061
-0.064
-9.379
1
20
G
9
H
17
-2.501
G_DT9:DA17_H
21
-11.986
-0.197
0.176
0.002
-5.827
1
19
G
10
H
16
0.964
G_DG10:DC16_H
22
-4.336
-0.168
-0.120
-0.083
7.196
1
19
G
11
H
15
1.218
G_DC11:DG15_H
23
-7.462
0.183
-0.298
-0.125
5.273
1
19
G
12
H
14
-0.325
G_DC12:DG14_H
24
-11.206
0.312
-0.260
-0.192
3.185
38.781
E
E
1
2
8.758
F
F
25
24
3.214
5.762
-0.641
-0.403
EE_DG1DA2:DT24DC25_FF
1
-7.356
11.181
37.680
-1.307
0.073
2.850
31.862
E
E
2
3
7.226
F
F
24
23
2.828
3.943
0.973
-0.584
EE_DA2DC3:DG23DT24_FF
2
4.855
-8.899
31.258
-1.693
-0.997
3.114
35.366
E
E
3
4
17.121
F
F
23
22
3.160
10.259
-0.394
0.332
EE_DC3DA4:DT22DG23_FF
3
0.933
-1.557
33.879
-0.938
0.784
3.037
31.747
E
E
4
5
8.107
F
F
22
21
3.208
4.415
0.009
-0.955
EE_DA4DT5:DA21DT22_FF
4
2.920
-5.361
31.314
-2.525
0.499
3.045
42.842
E
E
5
6
4.354
F
F
21
20
3.276
3.158
0.757
-0.254
EE_DT58OG6:DC20DA21_FF
5
-8.541
11.775
41.907
-0.655
-1.869
3.414
32.857
E
E
6
7
19.857
F
F
20
19
3.903
10.958
-0.139
-0.550
EE_8OG6DA7:DT19DC20_FF
6
6.252
-11.329
30.401
-3.159
1.493
2.237
28.235
E
E
7
8
14.831
F
F
19
18
2.473
7.151
-1.412
-0.138
EE_DA7DG8:DC18DT19_FF
7
2.348
-4.871
27.233
-1.503
3.295
3.222
30.195
E
E
8
9
-4.311
F
F
18
17
3.142
-2.242
-0.408
-0.915
EE_DG8DT9:DA17DC18_FF
8
-2.282
4.389
30.029
-1.313
0.332
3.214
35.263
E
E
9
10
33.417
F
F
17
16
3.778
19.201
1.246
0.108
EE_DT9DG10:DC16DA17_FF
9
-1.140
1.985
29.695
-3.150
-2.255
2.952
31.400
E
E
10
11
12.242
F
F
16
15
2.903
6.545
-1.138
-0.209
EE_DG10DC11:DG15DC16_FF
10
-5.560
10.399
30.231
-1.507
1.149
4.032
50.208
E
E
11
12
19.323
F
F
15
14
4.497
15.965
0.198
-0.198
EE_DC11DC12:DG14DG15_FF
11
-13.176
15.948
45.996
-1.807
-1.532
3.306
35.844
G
G
1
2
1.915
H
H
25
24
3.309
1.179
-0.255
0.079
GG_DG1DA2:DT24DC25_HH
12
0.532
-0.865
35.821
-0.042
0.492
2.717
32.611
G
G
2
3
15.305
H
H
24
23
2.923
8.491
0.810
-0.649
GG_DA2DC3:DG23DT24_HH
13
2.638
-4.755
31.407
-2.453
-1.039
3.248
34.358
G
G
3
4
13.038
H
H
23
22
3.290
7.620
-0.430
0.035
GG_DC3DA4:DT22DG23_HH
14
-4.445
7.606
33.239
-1.152
0.021
2.709
36.182
G
G
4
5
13.955
H
H
22
21
3.084
8.552
-0.587
-0.691
GG_DA4DT5:DA21DT22_HH
15
5.979
-9.758
34.693
-2.202
1.707
2.603
22.220
G
G
5
6
28.360
H
H
21
20
3.719
10.490
0.968
-1.260
GG_DT58OG6:DC20DA21_HH
16
-1.865
5.041
19.528
-7.349
-3.236
3.223
41.895
G
G
6
7
7.047
H
H
20
19
3.262
5.017
0.284
0.313
GG_8OG6DA7:DT19DC20_HH
17
-4.957
6.963
41.324
-0.085
-0.914
3.096
36.268
G
G
7
8
12.609
H
H
19
18
3.340
7.791
-0.614
-0.902
GG_DA7DG8:DC18DT19_HH
18
-1.059
1.714
35.434
-2.537
0.839
3.198
31.307
G
G
8
9
5.447
H
H
18
17
3.198
2.932
-0.902
-0.584
GG_DG8DT9:DA17DC18_HH
19
-2.797
5.198
31.051
-1.625
1.152
3.306
36.421
G
G
9
10
7.105
H
H
17
16
3.275
4.430
0.362
0.423
GG_DT9DG10:DC16DA17_HH
20
0.493
-0.790
36.156
0.056
-0.510
2.847
29.631
G
G
10
11
5.910
H
H
16
15
2.862
3.017
-0.726
-0.185
GG_DG10DC11:DG15DC16_HH
21
-0.799
1.565
29.470
-0.919
1.273
3.315
38.112
G
G
11
12
-0.577
H
H
15
14
3.306
-0.377
0.287
-0.138
GG_DC11DC12:DG14DG15_HH
22
1.461
-2.238
38.083
-0.163
-0.252
software
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_ref_seq
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2008-09-02
1
1
2011-07-13
1
2
2017-10-25
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
RCSB
Y
RCSB
2008-04-19
REL
REL
HOH
water
TIP
2
4
HOH
HOH
283
A
TIP
5
4
HOH
HOH
284
A
TIP
9
4
HOH
HOH
285
A
TIP
17
4
HOH
HOH
286
A
TIP
25
4
HOH
HOH
287
A
TIP
26
4
HOH
HOH
288
A
TIP
7
4
HOH
HOH
283
B
TIP
8
4
HOH
HOH
284
B
TIP
13
4
HOH
HOH
285
B
TIP
14
4
HOH
HOH
286
B
TIP
20
4
HOH
HOH
287
B
TIP
27
4
HOH
HOH
288
B
TIP
3
4
HOH
HOH
283
C
TIP
6
4
HOH
HOH
284
C
TIP
11
4
HOH
HOH
285
C
TIP
12
4
HOH
HOH
286
C
TIP
16
4
HOH
HOH
287
C
TIP
19
4
HOH
HOH
288
C
TIP
23
4
HOH
HOH
289
C
TIP
24
4
HOH
HOH
290
C
TIP
29
4
HOH
HOH
291
C
TIP
1
4
HOH
HOH
283
D
TIP
4
4
HOH
HOH
284
D
TIP
10
4
HOH
HOH
285
D
TIP
15
4
HOH
HOH
286
D
TIP
18
4
HOH
HOH
287
D
TIP
21
4
HOH
HOH
288
D
TIP
22
4
HOH
HOH
289
D
TIP
28
4
HOH
HOH
290
D
MET
1
n
1
MET
1
A
TYR
2
n
2
TYR
2
A
THR
3
n
3
THR
3
A
LEU
4
n
4
LEU
4
A
ASN
5
n
5
ASN
5
A
TRP
6
n
6
TRP
6
A
GLN
7
n
7
GLN
7
A
PRO
8
n
8
PRO
8
A
PRO
9
n
9
PRO
9
A
TYR
10
n
10
TYR
10
A
ASP
11
n
11
ASP
11
A
TRP
12
n
12
TRP
12
A
SER
13
n
13
SER
13
A
TRP
14
n
14
TRP
14
A
MET
15
n
15
MET
15
A
LEU
16
n
16
LEU
16
A
GLY
17
n
17
GLY
17
A
PHE
18
n
18
PHE
18
A
LEU
19
n
19
LEU
19
A
ALA
20
n
20
ALA
20
A
ALA
21
n
21
ALA
21
A
ARG
22
n
22
ARG
22
A
ALA
23
n
23
ALA
23
A
VAL
24
n
24
VAL
24
A
SER
25
n
25
SER
25
A
SER
26
n
26
SER
26
A
VAL
27
n
27
VAL
27
A
GLU
28
n
28
GLU
28
A
THR
29
n
29
THR
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
ASP
32
n
32
ASP
32
A
SER
33
n
33
SER
33
A
TYR
34
n
34
TYR
34
A
TYR
35
n
35
TYR
35
A
ALA
36
n
36
ALA
36
A
ARG
37
n
37
ARG
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ALA
40
n
40
ALA
40
A
VAL
41
n
41
VAL
41
A
GLY
42
n
42
GLY
42
A
GLU
43
n
43
GLU
43
A
TYR
44
n
44
TYR
44
A
ARG
45
n
45
ARG
45
A
GLY
46
n
46
GLY
46
A
VAL
47
n
47
VAL
47
A
VAL
48
n
48
VAL
48
A
THR
49
n
49
THR
49
A
ALA
50
n
50
ALA
50
A
ILE
51
n
51
ILE
51
A
PRO
52
n
52
PRO
52
A
ASP
53
n
53
ASP
53
A
ILE
54
n
54
ILE
54
A
ALA
55
n
55
ALA
55
A
ARG
56
n
56
ARG
56
A
HIS
57
n
57
HIS
57
A
THR
58
n
58
THR
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
ILE
61
n
61
ILE
61
A
ASN
62
n
62
ASN
62
A
LEU
63
n
63
LEU
63
A
SER
64
n
64
SER
64
A
ALA
65
n
65
ALA
65
A
GLY
66
n
66
GLY
66
A
LEU
67
n
67
LEU
67
A
GLU
68
n
68
GLU
68
A
PRO
69
n
69
PRO
69
A
VAL
70
n
70
VAL
70
A
ALA
71
n
71
ALA
71
A
ALA
72
n
72
ALA
72
A
GLU
73
n
73
GLU
73
A
CYS
74
n
74
CYS
74
A
LEU
75
n
75
LEU
75
A
ALA
76
n
76
ALA
76
A
LYS
77
n
77
LYS
77
A
MET
78
n
78
MET
78
A
SER
79
n
79
SER
79
A
ARG
80
n
80
ARG
80
A
LEU
81
n
81
LEU
81
A
PHE
82
n
82
PHE
82
A
ASP
83
n
83
ASP
83
A
LEU
84
n
84
LEU
84
A
GLN
85
n
85
GLN
85
A
CYS
86
n
86
CYS
86
A
ASN
87
n
87
ASN
87
A
PRO
88
n
88
PRO
88
A
GLN
89
n
89
GLN
89
A
ILE
90
n
90
ILE
90
A
VAL
91
n
91
VAL
91
A
ASN
92
n
92
ASN
92
A
GLY
93
n
93
GLY
93
A
ALA
94
n
94
ALA
94
A
LEU
95
n
95
LEU
95
A
GLY
96
n
96
GLY
96
A
ARG
97
n
97
ARG
97
A
LEU
98
n
98
LEU
98
A
GLY
99
n
99
GLY
99
A
ALA
100
n
100
ALA
100
A
ALA
101
n
101
ALA
101
A
ARG
102
n
102
ARG
102
A
PRO
103
n
103
PRO
103
A
GLY
104
n
104
GLY
104
A
LEU
105
n
105
LEU
105
A
ARG
106
n
106
ARG
106
A
LEU
107
n
107
LEU
107
A
PRO
108
n
108
PRO
108
A
GLY
109
n
109
GLY
109
A
CYS
110
n
110
CYS
110
A
VAL
111
n
111
VAL
111
A
ASP
112
n
112
ASP
112
A
ALA
113
n
113
ALA
113
A
PHE
114
n
114
PHE
114
A
GLU
115
n
115
GLU
115
A
GLN
116
n
116
GLN
116
A
GLY
117
n
117
GLY
117
A
VAL
118
n
118
VAL
118
A
ARG
119
n
119
ARG
119
A
ALA
120
n
120
ALA
120
A
ILE
121
n
121
ILE
121
A
LEU
122
n
122
LEU
122
A
GLY
123
n
123
GLY
123
A
GLN
124
n
124
GLN
124
A
LEU
125
n
125
LEU
125
A
VAL
126
n
126
VAL
126
A
SER
127
n
127
SER
127
A
VAL
128
n
128
VAL
128
A
ALA
129
n
129
ALA
129
A
MET
130
n
130
MET
130
A
ALA
131
n
131
ALA
131
A
ALA
132
n
132
ALA
132
A
LYS
133
n
133
LYS
133
A
LEU
134
n
134
LEU
134
A
THR
135
n
135
THR
135
A
ALA
136
n
136
ALA
136
A
ARG
137
n
137
ARG
137
A
VAL
138
n
138
VAL
138
A
ALA
139
n
139
ALA
139
A
GLN
140
n
140
GLN
140
A
LEU
141
n
141
LEU
141
A
TYR
142
n
142
TYR
142
A
GLY
143
n
143
GLY
143
A
GLU
144
n
144
GLU
144
A
ARG
145
n
145
ARG
145
A
LEU
146
n
146
LEU
146
A
ASP
147
n
147
ASP
147
A
ASP
148
n
148
ASP
148
A
PHE
149
n
149
PHE
149
A
PRO
150
n
150
PRO
150
A
GLU
151
n
151
GLU
151
A
TYR
152
n
152
TYR
152
A
ILE
153
n
153
ILE
153
A
CYS
154
n
154
CYS
154
A
PHE
155
n
155
PHE
155
A
PRO
156
n
156
PRO
156
A
THR
157
n
157
THR
157
A
PRO
158
n
158
PRO
158
A
GLN
159
n
159
GLN
159
A
ARG
160
n
160
ARG
160
A
LEU
161
n
161
LEU
161
A
ALA
162
n
162
ALA
162
A
ALA
163
n
163
ALA
163
A
ALA
164
n
164
ALA
164
A
ASP
165
n
165
ASP
165
A
PRO
166
n
166
PRO
166
A
GLN
167
n
167
GLN
167
A
ALA
168
n
168
ALA
168
A
LEU
169
n
169
LEU
169
A
LYS
170
n
170
LYS
170
A
ALA
171
n
171
ALA
171
A
LEU
172
n
172
LEU
172
A
GLY
173
n
173
GLY
173
A
MET
174
n
174
MET
174
A
PRO
175
n
175
PRO
175
A
LEU
176
n
176
LEU
176
A
LYS
177
n
177
LYS
177
A
ARG
178
n
178
ARG
178
A
ALA
179
n
179
ALA
179
A
GLU
180
n
180
GLU
180
A
ALA
181
n
181
ALA
181
A
LEU
182
n
182
LEU
182
A
ILE
183
n
183
ILE
183
A
HIS
184
n
184
HIS
184
A
LEU
185
n
185
LEU
185
A
ALA
186
n
186
ALA
186
A
ASN
187
n
187
ASN
187
A
ALA
188
n
188
ALA
188
A
ALA
189
n
189
ALA
189
A
LEU
190
n
190
LEU
190
A
GLU
191
n
191
GLU
191
A
GLY
192
n
192
GLY
192
A
THR
193
n
193
THR
193
A
LEU
194
n
194
LEU
194
A
PRO
195
n
195
PRO
195
A
MET
196
n
196
MET
196
A
THR
197
n
197
THR
197
A
ILE
198
n
198
ILE
198
A
PRO
199
n
199
PRO
199
A
GLY
200
n
200
GLY
200
A
ASP
201
n
201
ASP
201
A
VAL
202
n
202
VAL
202
A
GLU
203
n
203
GLU
203
A
GLN
204
n
204
GLN
204
A
ALA
205
n
205
ALA
205
A
MET
206
n
206
MET
206
A
LYS
207
n
207
LYS
207
A
THR
208
n
208
THR
208
A
LEU
209
n
209
LEU
209
A
GLN
210
n
210
GLN
210
A
THR
211
n
211
THR
211
A
PHE
212
n
212
PHE
212
A
PRO
213
n
213
PRO
213
A
GLY
214
n
214
GLY
214
A
ILE
215
n
215
ILE
215
A
GLY
216
n
216
GLY
216
A
ARG
217
n
217
ARG
217
A
TRP
218
n
218
TRP
218
A
THR
219
n
219
THR
219
A
ALA
220
n
220
ALA
220
A
ASN
221
n
221
ASN
221
A
TYR
222
n
222
TYR
222
A
PHE
223
n
223
PHE
223
A
ALA
224
n
224
ALA
224
A
LEU
225
n
225
LEU
225
A
ARG
226
n
226
ARG
226
A
GLY
227
n
227
GLY
227
A
TRP
228
n
228
TRP
228
A
GLN
229
n
229
GLN
229
A
ALA
230
n
230
ALA
230
A
LYS
231
n
231
LYS
231
A
ASP
232
n
232
ASP
232
A
VAL
233
n
233
VAL
233
A
PHE
234
n
234
PHE
234
A
LEU
235
n
235
LEU
235
A
PRO
236
n
236
PRO
236
A
ASP
237
n
237
ASP
237
A
ASP
238
n
238
ASP
238
A
TYR
239
n
239
TYR
239
A
LEU
240
n
240
LEU
240
A
ILE
241
n
241
ILE
241
A
LYS
242
n
242
LYS
242
A
GLN
243
n
243
GLN
243
A
ARG
244
n
244
ARG
244
A
PHE
245
n
245
PHE
245
A
PRO
246
n
246
PRO
246
A
GLY
247
n
247
GLY
247
A
MET
248
n
248
MET
248
A
THR
249
n
249
THR
249
A
PRO
250
n
250
PRO
250
A
ALA
251
n
251
ALA
251
A
GLN
252
n
252
GLN
252
A
ILE
253
n
253
ILE
253
A
ARG
254
n
254
ARG
254
A
ARG
255
n
255
ARG
255
A
TYR
256
n
256
TYR
256
A
ALA
257
n
257
ALA
257
A
GLU
258
n
258
GLU
258
A
ARG
259
n
259
ARG
259
A
TRP
260
n
260
TRP
260
A
LYS
261
n
261
LYS
261
A
PRO
262
n
262
PRO
262
A
TRP
263
n
263
TRP
263
A
ARG
264
n
264
ARG
264
A
SER
265
n
265
SER
265
A
TYR
266
n
266
TYR
266
A
ALA
267
n
267
ALA
267
A
LEU
268
n
268
LEU
268
A
LEU
269
n
269
LEU
269
A
HIS
270
n
270
HIS
270
A
ILE
271
n
271
ILE
271
A
TRP
272
n
272
TRP
272
A
TYR
273
n
273
TYR
273
A
THR
274
n
274
THR
274
A
GLU
275
n
275
GLU
275
A
GLY
276
n
276
GLY
276
A
TRP
277
n
277
TRP
277
A
GLN
278
n
278
GLN
278
A
PRO
279
n
279
PRO
279
A
ASP
280
n
280
ASP
280
A
GLU
281
n
281
GLU
281
A
ALA
282
n
282
ALA
282
A
MET
1
n
1
MET
1
B
TYR
2
n
2
TYR
2
B
THR
3
n
3
THR
3
B
LEU
4
n
4
LEU
4
B
ASN
5
n
5
ASN
5
B
TRP
6
n
6
TRP
6
B
GLN
7
n
7
GLN
7
B
PRO
8
n
8
PRO
8
B
PRO
9
n
9
PRO
9
B
TYR
10
n
10
TYR
10
B
ASP
11
n
11
ASP
11
B
TRP
12
n
12
TRP
12
B
SER
13
n
13
SER
13
B
TRP
14
n
14
TRP
14
B
MET
15
n
15
MET
15
B
LEU
16
n
16
LEU
16
B
GLY
17
n
17
GLY
17
B
PHE
18
n
18
PHE
18
B
LEU
19
n
19
LEU
19
B
ALA
20
n
20
ALA
20
B
ALA
21
n
21
ALA
21
B
ARG
22
n
22
ARG
22
B
ALA
23
n
23
ALA
23
B
VAL
24
n
24
VAL
24
B
SER
25
n
25
SER
25
B
SER
26
n
26
SER
26
B
VAL
27
n
27
VAL
27
B
GLU
28
n
28
GLU
28
B
THR
29
n
29
THR
29
B
VAL
30
n
30
VAL
30
B
ALA
31
n
31
ALA
31
B
ASP
32
n
32
ASP
32
B
SER
33
n
33
SER
33
B
TYR
34
n
34
TYR
34
B
TYR
35
n
35
TYR
35
B
ALA
36
n
36
ALA
36
B
ARG
37
n
37
ARG
37
B
SER
38
n
38
SER
38
B
LEU
39
n
39
LEU
39
B
ALA
40
n
40
ALA
40
B
VAL
41
n
41
VAL
41
B
GLY
42
n
42
GLY
42
B
GLU
43
n
43
GLU
43
B
TYR
44
n
44
TYR
44
B
ARG
45
n
45
ARG
45
B
GLY
46
n
46
GLY
46
B
VAL
47
n
47
VAL
47
B
VAL
48
n
48
VAL
48
B
THR
49
n
49
THR
49
B
ALA
50
n
50
ALA
50
B
ILE
51
n
51
ILE
51
B
PRO
52
n
52
PRO
52
B
ASP
53
n
53
ASP
53
B
ILE
54
n
54
ILE
54
B
ALA
55
n
55
ALA
55
B
ARG
56
n
56
ARG
56
B
HIS
57
n
57
HIS
57
B
THR
58
n
58
THR
58
B
LEU
59
n
59
LEU
59
B
HIS
60
n
60
HIS
60
B
ILE
61
n
61
ILE
61
B
ASN
62
n
62
ASN
62
B
LEU
63
n
63
LEU
63
B
SER
64
n
64
SER
64
B
ALA
65
n
65
ALA
65
B
GLY
66
n
66
GLY
66
B
LEU
67
n
67
LEU
67
B
GLU
68
n
68
GLU
68
B
PRO
69
n
69
PRO
69
B
VAL
70
n
70
VAL
70
B
ALA
71
n
71
ALA
71
B
ALA
72
n
72
ALA
72
B
GLU
73
n
73
GLU
73
B
CYS
74
n
74
CYS
74
B
LEU
75
n
75
LEU
75
B
ALA
76
n
76
ALA
76
B
LYS
77
n
77
LYS
77
B
MET
78
n
78
MET
78
B
SER
79
n
79
SER
79
B
ARG
80
n
80
ARG
80
B
LEU
81
n
81
LEU
81
B
PHE
82
n
82
PHE
82
B
ASP
83
n
83
ASP
83
B
LEU
84
n
84
LEU
84
B
GLN
85
n
85
GLN
85
B
CYS
86
n
86
CYS
86
B
ASN
87
n
87
ASN
87
B
PRO
88
n
88
PRO
88
B
GLN
89
n
89
GLN
89
B
ILE
90
n
90
ILE
90
B
VAL
91
n
91
VAL
91
B
ASN
92
n
92
ASN
92
B
GLY
93
n
93
GLY
93
B
ALA
94
n
94
ALA
94
B
LEU
95
n
95
LEU
95
B
GLY
96
n
96
GLY
96
B
ARG
97
n
97
ARG
97
B
LEU
98
n
98
LEU
98
B
GLY
99
n
99
GLY
99
B
ALA
100
n
100
ALA
100
B
ALA
101
n
101
ALA
101
B
ARG
102
n
102
ARG
102
B
PRO
103
n
103
PRO
103
B
GLY
104
n
104
GLY
104
B
LEU
105
n
105
LEU
105
B
ARG
106
n
106
ARG
106
B
LEU
107
n
107
LEU
107
B
PRO
108
n
108
PRO
108
B
GLY
109
n
109
GLY
109
B
CYS
110
n
110
CYS
110
B
VAL
111
n
111
VAL
111
B
ASP
112
n
112
ASP
112
B
ALA
113
n
113
ALA
113
B
PHE
114
n
114
PHE
114
B
GLU
115
n
115
GLU
115
B
GLN
116
n
116
GLN
116
B
GLY
117
n
117
GLY
117
B
VAL
118
n
118
VAL
118
B
ARG
119
n
119
ARG
119
B
ALA
120
n
120
ALA
120
B
ILE
121
n
121
ILE
121
B
LEU
122
n
122
LEU
122
B
GLY
123
n
123
GLY
123
B
GLN
124
n
124
GLN
124
B
LEU
125
n
125
LEU
125
B
VAL
126
n
126
VAL
126
B
SER
127
n
127
SER
127
B
VAL
128
n
128
VAL
128
B
ALA
129
n
129
ALA
129
B
MET
130
n
130
MET
130
B
ALA
131
n
131
ALA
131
B
ALA
132
n
132
ALA
132
B
LYS
133
n
133
LYS
133
B
LEU
134
n
134
LEU
134
B
THR
135
n
135
THR
135
B
ALA
136
n
136
ALA
136
B
ARG
137
n
137
ARG
137
B
VAL
138
n
138
VAL
138
B
ALA
139
n
139
ALA
139
B
GLN
140
n
140
GLN
140
B
LEU
141
n
141
LEU
141
B
TYR
142
n
142
TYR
142
B
GLY
143
n
143
GLY
143
B
GLU
144
n
144
GLU
144
B
ARG
145
n
145
ARG
145
B
LEU
146
n
146
LEU
146
B
ASP
147
n
147
ASP
147
B
ASP
148
n
148
ASP
148
B
PHE
149
n
149
PHE
149
B
PRO
150
n
150
PRO
150
B
GLU
151
n
151
GLU
151
B
TYR
152
n
152
TYR
152
B
ILE
153
n
153
ILE
153
B
CYS
154
n
154
CYS
154
B
PHE
155
n
155
PHE
155
B
PRO
156
n
156
PRO
156
B
THR
157
n
157
THR
157
B
PRO
158
n
158
PRO
158
B
GLN
159
n
159
GLN
159
B
ARG
160
n
160
ARG
160
B
LEU
161
n
161
LEU
161
B
ALA
162
n
162
ALA
162
B
ALA
163
n
163
ALA
163
B
ALA
164
n
164
ALA
164
B
ASP
165
n
165
ASP
165
B
PRO
166
n
166
PRO
166
B
GLN
167
n
167
GLN
167
B
ALA
168
n
168
ALA
168
B
LEU
169
n
169
LEU
169
B
LYS
170
n
170
LYS
170
B
ALA
171
n
171
ALA
171
B
LEU
172
n
172
LEU
172
B
GLY
173
n
173
GLY
173
B
MET
174
n
174
MET
174
B
PRO
175
n
175
PRO
175
B
LEU
176
n
176
LEU
176
B
LYS
177
n
177
LYS
177
B
ARG
178
n
178
ARG
178
B
ALA
179
n
179
ALA
179
B
GLU
180
n
180
GLU
180
B
ALA
181
n
181
ALA
181
B
LEU
182
n
182
LEU
182
B
ILE
183
n
183
ILE
183
B
HIS
184
n
184
HIS
184
B
LEU
185
n
185
LEU
185
B
ALA
186
n
186
ALA
186
B
ASN
187
n
187
ASN
187
B
ALA
188
n
188
ALA
188
B
ALA
189
n
189
ALA
189
B
LEU
190
n
190
LEU
190
B
GLU
191
n
191
GLU
191
B
GLY
192
n
192
GLY
192
B
THR
193
n
193
THR
193
B
LEU
194
n
194
LEU
194
B
PRO
195
n
195
PRO
195
B
MET
196
n
196
MET
196
B
THR
197
n
197
THR
197
B
ILE
198
n
198
ILE
198
B
PRO
199
n
199
PRO
199
B
GLY
200
n
200
GLY
200
B
ASP
201
n
201
ASP
201
B
VAL
202
n
202
VAL
202
B
GLU
203
n
203
GLU
203
B
GLN
204
n
204
GLN
204
B
ALA
205
n
205
ALA
205
B
MET
206
n
206
MET
206
B
LYS
207
n
207
LYS
207
B
THR
208
n
208
THR
208
B
LEU
209
n
209
LEU
209
B
GLN
210
n
210
GLN
210
B
THR
211
n
211
THR
211
B
PHE
212
n
212
PHE
212
B
PRO
213
n
213
PRO
213
B
GLY
214
n
214
GLY
214
B
ILE
215
n
215
ILE
215
B
GLY
216
n
216
GLY
216
B
ARG
217
n
217
ARG
217
B
TRP
218
n
218
TRP
218
B
THR
219
n
219
THR
219
B
ALA
220
n
220
ALA
220
B
ASN
221
n
221
ASN
221
B
TYR
222
n
222
TYR
222
B
PHE
223
n
223
PHE
223
B
ALA
224
n
224
ALA
224
B
LEU
225
n
225
LEU
225
B
ARG
226
n
226
ARG
226
B
GLY
227
n
227
GLY
227
B
TRP
228
n
228
TRP
228
B
GLN
229
n
229
GLN
229
B
ALA
230
n
230
ALA
230
B
LYS
231
n
231
LYS
231
B
ASP
232
n
232
ASP
232
B
VAL
233
n
233
VAL
233
B
PHE
234
n
234
PHE
234
B
LEU
235
n
235
LEU
235
B
PRO
236
n
236
PRO
236
B
ASP
237
n
237
ASP
237
B
ASP
238
n
238
ASP
238
B
TYR
239
n
239
TYR
239
B
LEU
240
n
240
LEU
240
B
ILE
241
n
241
ILE
241
B
LYS
242
n
242
LYS
242
B
GLN
243
n
243
GLN
243
B
ARG
244
n
244
ARG
244
B
PHE
245
n
245
PHE
245
B
PRO
246
n
246
PRO
246
B
GLY
247
n
247
GLY
247
B
MET
248
n
248
MET
248
B
THR
249
n
249
THR
249
B
PRO
250
n
250
PRO
250
B
ALA
251
n
251
ALA
251
B
GLN
252
n
252
GLN
252
B
ILE
253
n
253
ILE
253
B
ARG
254
n
254
ARG
254
B
ARG
255
n
255
ARG
255
B
TYR
256
n
256
TYR
256
B
ALA
257
n
257
ALA
257
B
GLU
258
n
258
GLU
258
B
ARG
259
n
259
ARG
259
B
TRP
260
n
260
TRP
260
B
LYS
261
n
261
LYS
261
B
PRO
262
n
262
PRO
262
B
TRP
263
n
263
TRP
263
B
ARG
264
n
264
ARG
264
B
SER
265
n
265
SER
265
B
TYR
266
n
266
TYR
266
B
ALA
267
n
267
ALA
267
B
LEU
268
n
268
LEU
268
B
LEU
269
n
269
LEU
269
B
HIS
270
n
270
HIS
270
B
ILE
271
n
271
ILE
271
B
TRP
272
n
272
TRP
272
B
TYR
273
n
273
TYR
273
B
THR
274
n
274
THR
274
B
GLU
275
n
275
GLU
275
B
GLY
276
n
276
GLY
276
B
TRP
277
n
277
TRP
277
B
GLN
278
n
278
GLN
278
B
PRO
279
n
279
PRO
279
B
ASP
280
n
280
ASP
280
B
GLU
281
n
281
GLU
281
B
ALA
282
n
282
ALA
282
B
MET
1
n
1
MET
1
C
TYR
2
n
2
TYR
2
C
THR
3
n
3
THR
3
C
LEU
4
n
4
LEU
4
C
ASN
5
n
5
ASN
5
C
TRP
6
n
6
TRP
6
C
GLN
7
n
7
GLN
7
C
PRO
8
n
8
PRO
8
C
PRO
9
n
9
PRO
9
C
TYR
10
n
10
TYR
10
C
ASP
11
n
11
ASP
11
C
TRP
12
n
12
TRP
12
C
SER
13
n
13
SER
13
C
TRP
14
n
14
TRP
14
C
MET
15
n
15
MET
15
C
LEU
16
n
16
LEU
16
C
GLY
17
n
17
GLY
17
C
PHE
18
n
18
PHE
18
C
LEU
19
n
19
LEU
19
C
ALA
20
n
20
ALA
20
C
ALA
21
n
21
ALA
21
C
ARG
22
n
22
ARG
22
C
ALA
23
n
23
ALA
23
C
VAL
24
n
24
VAL
24
C
SER
25
n
25
SER
25
C
SER
26
n
26
SER
26
C
VAL
27
n
27
VAL
27
C
GLU
28
n
28
GLU
28
C
THR
29
n
29
THR
29
C
VAL
30
n
30
VAL
30
C
ALA
31
n
31
ALA
31
C
ASP
32
n
32
ASP
32
C
SER
33
n
33
SER
33
C
TYR
34
n
34
TYR
34
C
TYR
35
n
35
TYR
35
C
ALA
36
n
36
ALA
36
C
ARG
37
n
37
ARG
37
C
SER
38
n
38
SER
38
C
LEU
39
n
39
LEU
39
C
ALA
40
n
40
ALA
40
C
VAL
41
n
41
VAL
41
C
GLY
42
n
42
GLY
42
C
GLU
43
n
43
GLU
43
C
TYR
44
n
44
TYR
44
C
ARG
45
n
45
ARG
45
C
GLY
46
n
46
GLY
46
C
VAL
47
n
47
VAL
47
C
VAL
48
n
48
VAL
48
C
THR
49
n
49
THR
49
C
ALA
50
n
50
ALA
50
C
ILE
51
n
51
ILE
51
C
PRO
52
n
52
PRO
52
C
ASP
53
n
53
ASP
53
C
ILE
54
n
54
ILE
54
C
ALA
55
n
55
ALA
55
C
ARG
56
n
56
ARG
56
C
HIS
57
n
57
HIS
57
C
THR
58
n
58
THR
58
C
LEU
59
n
59
LEU
59
C
HIS
60
n
60
HIS
60
C
ILE
61
n
61
ILE
61
C
ASN
62
n
62
ASN
62
C
LEU
63
n
63
LEU
63
C
SER
64
n
64
SER
64
C
ALA
65
n
65
ALA
65
C
GLY
66
n
66
GLY
66
C
LEU
67
n
67
LEU
67
C
GLU
68
n
68
GLU
68
C
PRO
69
n
69
PRO
69
C
VAL
70
n
70
VAL
70
C
ALA
71
n
71
ALA
71
C
ALA
72
n
72
ALA
72
C
GLU
73
n
73
GLU
73
C
CYS
74
n
74
CYS
74
C
LEU
75
n
75
LEU
75
C
ALA
76
n
76
ALA
76
C
LYS
77
n
77
LYS
77
C
MET
78
n
78
MET
78
C
SER
79
n
79
SER
79
C
ARG
80
n
80
ARG
80
C
LEU
81
n
81
LEU
81
C
PHE
82
n
82
PHE
82
C
ASP
83
n
83
ASP
83
C
LEU
84
n
84
LEU
84
C
GLN
85
n
85
GLN
85
C
CYS
86
n
86
CYS
86
C
ASN
87
n
87
ASN
87
C
PRO
88
n
88
PRO
88
C
GLN
89
n
89
GLN
89
C
ILE
90
n
90
ILE
90
C
VAL
91
n
91
VAL
91
C
ASN
92
n
92
ASN
92
C
GLY
93
n
93
GLY
93
C
ALA
94
n
94
ALA
94
C
LEU
95
n
95
LEU
95
C
GLY
96
n
96
GLY
96
C
ARG
97
n
97
ARG
97
C
LEU
98
n
98
LEU
98
C
GLY
99
n
99
GLY
99
C
ALA
100
n
100
ALA
100
C
ALA
101
n
101
ALA
101
C
ARG
102
n
102
ARG
102
C
PRO
103
n
103
PRO
103
C
GLY
104
n
104
GLY
104
C
LEU
105
n
105
LEU
105
C
ARG
106
n
106
ARG
106
C
LEU
107
n
107
LEU
107
C
PRO
108
n
108
PRO
108
C
GLY
109
n
109
GLY
109
C
CYS
110
n
110
CYS
110
C
VAL
111
n
111
VAL
111
C
ASP
112
n
112
ASP
112
C
ALA
113
n
113
ALA
113
C
PHE
114
n
114
PHE
114
C
GLU
115
n
115
GLU
115
C
GLN
116
n
116
GLN
116
C
GLY
117
n
117
GLY
117
C
VAL
118
n
118
VAL
118
C
ARG
119
n
119
ARG
119
C
ALA
120
n
120
ALA
120
C
ILE
121
n
121
ILE
121
C
LEU
122
n
122
LEU
122
C
GLY
123
n
123
GLY
123
C
GLN
124
n
124
GLN
124
C
LEU
125
n
125
LEU
125
C
VAL
126
n
126
VAL
126
C
SER
127
n
127
SER
127
C
VAL
128
n
128
VAL
128
C
ALA
129
n
129
ALA
129
C
MET
130
n
130
MET
130
C
ALA
131
n
131
ALA
131
C
ALA
132
n
132
ALA
132
C
LYS
133
n
133
LYS
133
C
LEU
134
n
134
LEU
134
C
THR
135
n
135
THR
135
C
ALA
136
n
136
ALA
136
C
ARG
137
n
137
ARG
137
C
VAL
138
n
138
VAL
138
C
ALA
139
n
139
ALA
139
C
GLN
140
n
140
GLN
140
C
LEU
141
n
141
LEU
141
C
TYR
142
n
142
TYR
142
C
GLY
143
n
143
GLY
143
C
GLU
144
n
144
GLU
144
C
ARG
145
n
145
ARG
145
C
LEU
146
n
146
LEU
146
C
ASP
147
n
147
ASP
147
C
ASP
148
n
148
ASP
148
C
PHE
149
n
149
PHE
149
C
PRO
150
n
150
PRO
150
C
GLU
151
n
151
GLU
151
C
TYR
152
n
152
TYR
152
C
ILE
153
n
153
ILE
153
C
CYS
154
n
154
CYS
154
C
PHE
155
n
155
PHE
155
C
PRO
156
n
156
PRO
156
C
THR
157
n
157
THR
157
C
PRO
158
n
158
PRO
158
C
GLN
159
n
159
GLN
159
C
ARG
160
n
160
ARG
160
C
LEU
161
n
161
LEU
161
C
ALA
162
n
162
ALA
162
C
ALA
163
n
163
ALA
163
C
ALA
164
n
164
ALA
164
C
ASP
165
n
165
ASP
165
C
PRO
166
n
166
PRO
166
C
GLN
167
n
167
GLN
167
C
ALA
168
n
168
ALA
168
C
LEU
169
n
169
LEU
169
C
LYS
170
n
170
LYS
170
C
ALA
171
n
171
ALA
171
C
LEU
172
n
172
LEU
172
C
GLY
173
n
173
GLY
173
C
MET
174
n
174
MET
174
C
PRO
175
n
175
PRO
175
C
LEU
176
n
176
LEU
176
C
LYS
177
n
177
LYS
177
C
ARG
178
n
178
ARG
178
C
ALA
179
n
179
ALA
179
C
GLU
180
n
180
GLU
180
C
ALA
181
n
181
ALA
181
C
LEU
182
n
182
LEU
182
C
ILE
183
n
183
ILE
183
C
HIS
184
n
184
HIS
184
C
LEU
185
n
185
LEU
185
C
ALA
186
n
186
ALA
186
C
ASN
187
n
187
ASN
187
C
ALA
188
n
188
ALA
188
C
ALA
189
n
189
ALA
189
C
LEU
190
n
190
LEU
190
C
GLU
191
n
191
GLU
191
C
GLY
192
n
192
GLY
192
C
THR
193
n
193
THR
193
C
LEU
194
n
194
LEU
194
C
PRO
195
n
195
PRO
195
C
MET
196
n
196
MET
196
C
THR
197
n
197
THR
197
C
ILE
198
n
198
ILE
198
C
PRO
199
n
199
PRO
199
C
GLY
200
n
200
GLY
200
C
ASP
201
n
201
ASP
201
C
VAL
202
n
202
VAL
202
C
GLU
203
n
203
GLU
203
C
GLN
204
n
204
GLN
204
C
ALA
205
n
205
ALA
205
C
MET
206
n
206
MET
206
C
LYS
207
n
207
LYS
207
C
THR
208
n
208
THR
208
C
LEU
209
n
209
LEU
209
C
GLN
210
n
210
GLN
210
C
THR
211
n
211
THR
211
C
PHE
212
n
212
PHE
212
C
PRO
213
n
213
PRO
213
C
GLY
214
n
214
GLY
214
C
ILE
215
n
215
ILE
215
C
GLY
216
n
216
GLY
216
C
ARG
217
n
217
ARG
217
C
TRP
218
n
218
TRP
218
C
THR
219
n
219
THR
219
C
ALA
220
n
220
ALA
220
C
ASN
221
n
221
ASN
221
C
TYR
222
n
222
TYR
222
C
PHE
223
n
223
PHE
223
C
ALA
224
n
224
ALA
224
C
LEU
225
n
225
LEU
225
C
ARG
226
n
226
ARG
226
C
GLY
227
n
227
GLY
227
C
TRP
228
n
228
TRP
228
C
GLN
229
n
229
GLN
229
C
ALA
230
n
230
ALA
230
C
LYS
231
n
231
LYS
231
C
ASP
232
n
232
ASP
232
C
VAL
233
n
233
VAL
233
C
PHE
234
n
234
PHE
234
C
LEU
235
n
235
LEU
235
C
PRO
236
n
236
PRO
236
C
ASP
237
n
237
ASP
237
C
ASP
238
n
238
ASP
238
C
TYR
239
n
239
TYR
239
C
LEU
240
n
240
LEU
240
C
ILE
241
n
241
ILE
241
C
LYS
242
n
242
LYS
242
C
GLN
243
n
243
GLN
243
C
ARG
244
n
244
ARG
244
C
PHE
245
n
245
PHE
245
C
PRO
246
n
246
PRO
246
C
GLY
247
n
247
GLY
247
C
MET
248
n
248
MET
248
C
THR
249
n
249
THR
249
C
PRO
250
n
250
PRO
250
C
ALA
251
n
251
ALA
251
C
GLN
252
n
252
GLN
252
C
ILE
253
n
253
ILE
253
C
ARG
254
n
254
ARG
254
C
ARG
255
n
255
ARG
255
C
TYR
256
n
256
TYR
256
C
ALA
257
n
257
ALA
257
C
GLU
258
n
258
GLU
258
C
ARG
259
n
259
ARG
259
C
TRP
260
n
260
TRP
260
C
LYS
261
n
261
LYS
261
C
PRO
262
n
262
PRO
262
C
TRP
263
n
263
TRP
263
C
ARG
264
n
264
ARG
264
C
SER
265
n
265
SER
265
C
TYR
266
n
266
TYR
266
C
ALA
267
n
267
ALA
267
C
LEU
268
n
268
LEU
268
C
LEU
269
n
269
LEU
269
C
HIS
270
n
270
HIS
270
C
ILE
271
n
271
ILE
271
C
TRP
272
n
272
TRP
272
C
TYR
273
n
273
TYR
273
C
THR
274
n
274
THR
274
C
GLU
275
n
275
GLU
275
C
GLY
276
n
276
GLY
276
C
TRP
277
n
277
TRP
277
C
GLN
278
n
278
GLN
278
C
PRO
279
n
279
PRO
279
C
ASP
280
n
280
ASP
280
C
GLU
281
n
281
GLU
281
C
ALA
282
n
282
ALA
282
C
MET
1
n
1
MET
1
D
TYR
2
n
2
TYR
2
D
THR
3
n
3
THR
3
D
LEU
4
n
4
LEU
4
D
ASN
5
n
5
ASN
5
D
TRP
6
n
6
TRP
6
D
GLN
7
n
7
GLN
7
D
PRO
8
n
8
PRO
8
D
PRO
9
n
9
PRO
9
D
TYR
10
n
10
TYR
10
D
ASP
11
n
11
ASP
11
D
TRP
12
n
12
TRP
12
D
SER
13
n
13
SER
13
D
TRP
14
n
14
TRP
14
D
MET
15
n
15
MET
15
D
LEU
16
n
16
LEU
16
D
GLY
17
n
17
GLY
17
D
PHE
18
n
18
PHE
18
D
LEU
19
n
19
LEU
19
D
ALA
20
n
20
ALA
20
D
ALA
21
n
21
ALA
21
D
ARG
22
n
22
ARG
22
D
ALA
23
n
23
ALA
23
D
VAL
24
n
24
VAL
24
D
SER
25
n
25
SER
25
D
SER
26
n
26
SER
26
D
VAL
27
n
27
VAL
27
D
GLU
28
n
28
GLU
28
D
THR
29
n
29
THR
29
D
VAL
30
n
30
VAL
30
D
ALA
31
n
31
ALA
31
D
ASP
32
n
32
ASP
32
D
SER
33
n
33
SER
33
D
TYR
34
n
34
TYR
34
D
TYR
35
n
35
TYR
35
D
ALA
36
n
36
ALA
36
D
ARG
37
n
37
ARG
37
D
SER
38
n
38
SER
38
D
LEU
39
n
39
LEU
39
D
ALA
40
n
40
ALA
40
D
VAL
41
n
41
VAL
41
D
GLY
42
n
42
GLY
42
D
GLU
43
n
43
GLU
43
D
TYR
44
n
44
TYR
44
D
ARG
45
n
45
ARG
45
D
GLY
46
n
46
GLY
46
D
VAL
47
n
47
VAL
47
D
VAL
48
n
48
VAL
48
D
THR
49
n
49
THR
49
D
ALA
50
n
50
ALA
50
D
ILE
51
n
51
ILE
51
D
PRO
52
n
52
PRO
52
D
ASP
53
n
53
ASP
53
D
ILE
54
n
54
ILE
54
D
ALA
55
n
55
ALA
55
D
ARG
56
n
56
ARG
56
D
HIS
57
n
57
HIS
57
D
THR
58
n
58
THR
58
D
LEU
59
n
59
LEU
59
D
HIS
60
n
60
HIS
60
D
ILE
61
n
61
ILE
61
D
ASN
62
n
62
ASN
62
D
LEU
63
n
63
LEU
63
D
SER
64
n
64
SER
64
D
ALA
65
n
65
ALA
65
D
GLY
66
n
66
GLY
66
D
LEU
67
n
67
LEU
67
D
GLU
68
n
68
GLU
68
D
PRO
69
n
69
PRO
69
D
VAL
70
n
70
VAL
70
D
ALA
71
n
71
ALA
71
D
ALA
72
n
72
ALA
72
D
GLU
73
n
73
GLU
73
D
CYS
74
n
74
CYS
74
D
LEU
75
n
75
LEU
75
D
ALA
76
n
76
ALA
76
D
LYS
77
n
77
LYS
77
D
MET
78
n
78
MET
78
D
SER
79
n
79
SER
79
D
ARG
80
n
80
ARG
80
D
LEU
81
n
81
LEU
81
D
PHE
82
n
82
PHE
82
D
ASP
83
n
83
ASP
83
D
LEU
84
n
84
LEU
84
D
GLN
85
n
85
GLN
85
D
CYS
86
n
86
CYS
86
D
ASN
87
n
87
ASN
87
D
PRO
88
n
88
PRO
88
D
GLN
89
n
89
GLN
89
D
ILE
90
n
90
ILE
90
D
VAL
91
n
91
VAL
91
D
ASN
92
n
92
ASN
92
D
GLY
93
n
93
GLY
93
D
ALA
94
n
94
ALA
94
D
LEU
95
n
95
LEU
95
D
GLY
96
n
96
GLY
96
D
ARG
97
n
97
ARG
97
D
LEU
98
n
98
LEU
98
D
GLY
99
n
99
GLY
99
D
ALA
100
n
100
ALA
100
D
ALA
101
n
101
ALA
101
D
ARG
102
n
102
ARG
102
D
PRO
103
n
103
PRO
103
D
GLY
104
n
104
GLY
104
D
LEU
105
n
105
LEU
105
D
ARG
106
n
106
ARG
106
D
LEU
107
n
107
LEU
107
D
PRO
108
n
108
PRO
108
D
GLY
109
n
109
GLY
109
D
CYS
110
n
110
CYS
110
D
VAL
111
n
111
VAL
111
D
ASP
112
n
112
ASP
112
D
ALA
113
n
113
ALA
113
D
PHE
114
n
114
PHE
114
D
GLU
115
n
115
GLU
115
D
GLN
116
n
116
GLN
116
D
GLY
117
n
117
GLY
117
D
VAL
118
n
118
VAL
118
D
ARG
119
n
119
ARG
119
D
ALA
120
n
120
ALA
120
D
ILE
121
n
121
ILE
121
D
LEU
122
n
122
LEU
122
D
GLY
123
n
123
GLY
123
D
GLN
124
n
124
GLN
124
D
LEU
125
n
125
LEU
125
D
VAL
126
n
126
VAL
126
D
SER
127
n
127
SER
127
D
VAL
128
n
128
VAL
128
D
ALA
129
n
129
ALA
129
D
MET
130
n
130
MET
130
D
ALA
131
n
131
ALA
131
D
ALA
132
n
132
ALA
132
D
LYS
133
n
133
LYS
133
D
LEU
134
n
134
LEU
134
D
THR
135
n
135
THR
135
D
ALA
136
n
136
ALA
136
D
ARG
137
n
137
ARG
137
D
VAL
138
n
138
VAL
138
D
ALA
139
n
139
ALA
139
D
GLN
140
n
140
GLN
140
D
LEU
141
n
141
LEU
141
D
TYR
142
n
142
TYR
142
D
GLY
143
n
143
GLY
143
D
GLU
144
n
144
GLU
144
D
ARG
145
n
145
ARG
145
D
LEU
146
n
146
LEU
146
D
ASP
147
n
147
ASP
147
D
ASP
148
n
148
ASP
148
D
PHE
149
n
149
PHE
149
D
PRO
150
n
150
PRO
150
D
GLU
151
n
151
GLU
151
D
TYR
152
n
152
TYR
152
D
ILE
153
n
153
ILE
153
D
CYS
154
n
154
CYS
154
D
PHE
155
n
155
PHE
155
D
PRO
156
n
156
PRO
156
D
THR
157
n
157
THR
157
D
PRO
158
n
158
PRO
158
D
GLN
159
n
159
GLN
159
D
ARG
160
n
160
ARG
160
D
LEU
161
n
161
LEU
161
D
ALA
162
n
162
ALA
162
D
ALA
163
n
163
ALA
163
D
ALA
164
n
164
ALA
164
D
ASP
165
n
165
ASP
165
D
PRO
166
n
166
PRO
166
D
GLN
167
n
167
GLN
167
D
ALA
168
n
168
ALA
168
D
LEU
169
n
169
LEU
169
D
LYS
170
n
170
LYS
170
D
ALA
171
n
171
ALA
171
D
LEU
172
n
172
LEU
172
D
GLY
173
n
173
GLY
173
D
MET
174
n
174
MET
174
D
PRO
175
n
175
PRO
175
D
LEU
176
n
176
LEU
176
D
LYS
177
n
177
LYS
177
D
ARG
178
n
178
ARG
178
D
ALA
179
n
179
ALA
179
D
GLU
180
n
180
GLU
180
D
ALA
181
n
181
ALA
181
D
LEU
182
n
182
LEU
182
D
ILE
183
n
183
ILE
183
D
HIS
184
n
184
HIS
184
D
LEU
185
n
185
LEU
185
D
ALA
186
n
186
ALA
186
D
ASN
187
n
187
ASN
187
D
ALA
188
n
188
ALA
188
D
ALA
189
n
189
ALA
189
D
LEU
190
n
190
LEU
190
D
GLU
191
n
191
GLU
191
D
GLY
192
n
192
GLY
192
D
THR
193
n
193
THR
193
D
LEU
194
n
194
LEU
194
D
PRO
195
n
195
PRO
195
D
MET
196
n
196
MET
196
D
THR
197
n
197
THR
197
D
ILE
198
n
198
ILE
198
D
PRO
199
n
199
PRO
199
D
GLY
200
n
200
GLY
200
D
ASP
201
n
201
ASP
201
D
VAL
202
n
202
VAL
202
D
GLU
203
n
203
GLU
203
D
GLN
204
n
204
GLN
204
D
ALA
205
n
205
ALA
205
D
MET
206
n
206
MET
206
D
LYS
207
n
207
LYS
207
D
THR
208
n
208
THR
208
D
LEU
209
n
209
LEU
209
D
GLN
210
n
210
GLN
210
D
THR
211
n
211
THR
211
D
PHE
212
n
212
PHE
212
D
PRO
213
n
213
PRO
213
D
GLY
214
n
214
GLY
214
D
ILE
215
n
215
ILE
215
D
GLY
216
n
216
GLY
216
D
ARG
217
n
217
ARG
217
D
TRP
218
n
218
TRP
218
D
THR
219
n
219
THR
219
D
ALA
220
n
220
ALA
220
D
ASN
221
n
221
ASN
221
D
TYR
222
n
222
TYR
222
D
PHE
223
n
223
PHE
223
D
ALA
224
n
224
ALA
224
D
LEU
225
n
225
LEU
225
D
ARG
226
n
226
ARG
226
D
GLY
227
n
227
GLY
227
D
TRP
228
n
228
TRP
228
D
GLN
229
n
229
GLN
229
D
ALA
230
n
230
ALA
230
D
LYS
231
n
231
LYS
231
D
ASP
232
n
232
ASP
232
D
VAL
233
n
233
VAL
233
D
PHE
234
n
234
PHE
234
D
LEU
235
n
235
LEU
235
D
PRO
236
n
236
PRO
236
D
ASP
237
n
237
ASP
237
D
ASP
238
n
238
ASP
238
D
TYR
239
n
239
TYR
239
D
LEU
240
n
240
LEU
240
D
ILE
241
n
241
ILE
241
D
LYS
242
n
242
LYS
242
D
GLN
243
n
243
GLN
243
D
ARG
244
n
244
ARG
244
D
PHE
245
n
245
PHE
245
D
PRO
246
n
246
PRO
246
D
GLY
247
n
247
GLY
247
D
MET
248
n
248
MET
248
D
THR
249
n
249
THR
249
D
PRO
250
n
250
PRO
250
D
ALA
251
n
251
ALA
251
D
GLN
252
n
252
GLN
252
D
ILE
253
n
253
ILE
253
D
ARG
254
n
254
ARG
254
D
ARG
255
n
255
ARG
255
D
TYR
256
n
256
TYR
256
D
ALA
257
n
257
ALA
257
D
GLU
258
n
258
GLU
258
D
ARG
259
n
259
ARG
259
D
TRP
260
n
260
TRP
260
D
LYS
261
n
261
LYS
261
D
PRO
262
n
262
PRO
262
D
TRP
263
n
263
TRP
263
D
ARG
264
n
264
ARG
264
D
SER
265
n
265
SER
265
D
TYR
266
n
266
TYR
266
D
ALA
267
n
267
ALA
267
D
LEU
268
n
268
LEU
268
D
LEU
269
n
269
LEU
269
D
HIS
270
n
270
HIS
270
D
ILE
271
n
271
ILE
271
D
TRP
272
n
272
TRP
272
D
TYR
273
n
273
TYR
273
D
THR
274
n
274
THR
274
D
GLU
275
n
275
GLU
275
D
GLY
276
n
276
GLY
276
D
TRP
277
n
277
TRP
277
D
GLN
278
n
278
GLN
278
D
PRO
279
n
279
PRO
279
D
ASP
280
n
280
ASP
280
D
GLU
281
n
281
GLU
281
D
ALA
282
n
282
ALA
282
D
G
1
n
1
DG
1
E
A
2
n
2
DA
2
E
C
3
n
3
DC
3
E
A
4
n
4
DA
4
E
T
5
n
5
DT
5
E
8OG
6
n
6
8OG
6
E
A
7
n
7
DA
7
E
G
8
n
8
DG
8
E
T
9
n
9
DT
9
E
G
10
n
10
DG
10
E
C
11
n
11
DC
11
E
C
12
n
12
DC
12
E
G
14
n
1
DG
14
F
G
15
n
2
DG
15
F
C
16
n
3
DC
16
F
A
17
n
4
DA
17
F
C
18
n
5
DC
18
F
T
19
n
6
DT
19
F
C
20
n
7
DC
20
F
A
21
n
8
DA
21
F
T
22
n
9
DT
22
F
G
23
n
10
DG
23
F
T
24
n
11
DT
24
F
C
25
n
12
DC
25
F
G
1
n
1
DG
1
G
A
2
n
2
DA
2
G
C
3
n
3
DC
3
G
A
4
n
4
DA
4
G
T
5
n
5
DT
5
G
8OG
6
n
6
8OG
6
G
A
7
n
7
DA
7
G
G
8
n
8
DG
8
G
T
9
n
9
DT
9
G
G
10
n
10
DG
10
G
C
11
n
11
DC
11
G
C
12
n
12
DC
12
G
G
14
n
1
DG
14
H
G
15
n
2
DG
15
H
C
16
n
3
DC
16
H
A
17
n
4
DA
17
H
C
18
n
5
DC
18
H
T
19
n
6
DT
19
H
C
20
n
7
DC
20
H
A
21
n
8
DA
21
H
T
22
n
9
DT
22
H
G
23
n
10
DG
23
H
T
24
n
11
DT
24
H
C
25
n
12
DC
25
H
author_and_software_defined_assembly
PISA
8
octameric
10760
-57
53470
E
8OG
6
E
8OG
6
DG
G
8OG
6
G
8OG
6
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
2
A
N
TYR
2
A
O
ILE
61
A
O
ILE
61
A
O
HIS
60
A
O
HIS
60
A
N
ILE
51
A
N
ILE
51
A
O
ALA
50
A
O
ALA
50
A
N
TYR
35
A
N
TYR
35
A
O
ALA
36
A
O
ALA
36
A
N
THR
29
A
N
THR
29
A
N
LEU
146
A
N
LEU
146
A
O
TYR
152
A
O
TYR
152
B
N
LEU
4
B
N
LEU
4
B
O
LEU
59
B
O
LEU
59
B
O
HIS
60
B
O
HIS
60
B
N
ILE
51
B
N
ILE
51
B
O
ALA
50
B
O
ALA
50
B
N
TYR
35
B
N
TYR
35
B
O
ALA
36
B
O
ALA
36
B
N
THR
29
B
N
THR
29
B
N
GLU
144
B
N
GLU
144
B
O
CYS
154
B
O
CYS
154
C
N
LEU
4
C
N
LEU
4
C
O
LEU
59
C
O
LEU
59
C
O
HIS
60
C
O
HIS
60
C
N
ILE
51
C
N
ILE
51
C
O
ALA
50
C
O
ALA
50
C
N
TYR
35
C
N
TYR
35
C
O
ALA
36
C
O
ALA
36
C
N
THR
29
C
N
THR
29
C
N
GLU
144
C
N
GLU
144
C
O
CYS
154
C
O
CYS
154
D
N
LEU
4
D
N
LEU
4
D
O
LEU
59
D
O
LEU
59
D
O
THR
58
D
O
THR
58
D
N
ASP
53
D
N
ASP
53
D
O
ALA
50
D
O
ALA
50
D
N
TYR
35
D
N
TYR
35
D
O
ALA
36
D
O
ALA
36
D
N
THR
29
D
N
THR
29
1
9.95
1.50
119.30
129.25
B
B
B
C
N
CA
PHE
PRO
PRO
149
150
150
Y
1
A
SER
26
91.44
-21.88
1
A
GLU
43
-99.91
31.27
1
A
ASP
112
-160.20
117.22
1
A
LEU
125
76.48
-37.10
1
A
ALA
163
-106.19
65.38
1
A
LEU
235
-117.05
77.56
1
A
ALA
257
-58.66
-9.22
1
A
PRO
262
-99.18
30.70
1
B
SER
26
73.75
-15.56
1
B
PRO
166
-60.42
6.29
1
B
LEU
172
-47.47
-19.68
1
B
PRO
175
-59.63
-167.83
1
B
PRO
246
-30.71
124.77
1
B
MET
248
-16.04
145.36
1
B
PRO
250
-42.07
-7.60
1
B
TYR
273
-96.50
38.37
1
C
SER
26
82.33
-7.36
1
C
HIS
57
30.22
50.18
1
C
LEU
125
61.74
-58.60
1
C
PRO
262
-98.99
31.16
1
C
TYR
273
-105.45
51.32
1
C
THR
274
-156.30
84.94
1
C
TRP
277
-26.75
148.19
1
C
GLU
281
-34.83
92.45
1
D
SER
26
83.79
-30.93
1
D
SER
64
-69.56
-140.14
1
D
LEU
122
-65.27
1.97
1
D
LEU
125
68.68
-40.22
1
D
VAL
128
-61.43
-70.28
1
D
PHE
149
-155.77
68.52
1
D
LYS
177
-37.57
-39.45
1
D
ASP
201
-103.66
75.93
1
D
LEU
235
-119.78
75.35
1
D
PHE
245
-116.15
66.85
1
D
ALA
257
-59.46
-9.04
1
D
TYR
273
-99.14
44.02
CNS_TOPPAR:protein_rep.param
oxo_par.txt*
CNS_TOPPAR:dna-rna.param
dna-rna_rep_dihedral_comtout.param
CNS_TOPPAR:water_rep.param
57.916
-5.844
0.000
-11.792
-2.897
0.000
8.741
0.274
0.221
2.500
50.000
5077
50117
9.500
93.600
1
0.00
31.837
2.500
50.000
29
9863
0
974
8860
2.500
50.000
3CVT
52651
0.045
0.815
1,2
11.900
3.600
97.800
0.274
2.50
2.59
4558
0.518
2.90
84.50
0.248
2.59
2.69
5080
0.529
3.30
95.30
0.207
2.69
2.82
5326
0.537
3.60
99.50
0.150
2.82
2.96
5341
0.564
3.80
99.90
0.100
2.96
3.15
5394
0.586
3.80
99.90
0.063
3.15
3.39
5348
0.693
3.80
100.00
0.048
3.39
3.73
5371
0.947
3.80
100.00
0.044
3.73
4.27
5374
1.454
3.70
100.00
0.033
4.27
5.38
5423
1.255
3.70
99.90
0.020
5.38
50.00
5436
0.892
3.70
99.20
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.005
Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
biological unit is a protein monomer
A
ASP
11
A
ASP
11
HELX_P
A
ALA
23
A
ALA
23
1
1
13
A
ALA
65
A
ALA
65
HELX_P
A
PRO
69
A
PRO
69
5
2
5
A
VAL
70
A
VAL
70
HELX_P
A
PHE
82
A
PHE
82
1
3
13
A
ASN
87
A
ASN
87
HELX_P
A
GLY
96
A
GLY
96
1
4
10
A
GLY
96
A
GLY
96
HELX_P
A
ALA
101
A
ALA
101
1
5
6
A
ASP
112
A
ASP
112
HELX_P
A
GLY
123
A
GLY
123
1
6
12
A
SER
127
A
SER
127
HELX_P
A
GLY
143
A
GLY
143
1
7
17
A
THR
157
A
THR
157
HELX_P
A
ALA
163
A
ALA
163
1
8
7
A
ASP
165
A
ASP
165
HELX_P
A
LEU
172
A
LEU
172
1
9
8
A
PRO
175
A
PRO
175
HELX_P
A
GLY
192
A
GLY
192
1
10
18
A
ASP
201
A
ASP
201
HELX_P
A
GLN
210
A
GLN
210
1
11
10
A
GLY
216
A
GLY
216
HELX_P
A
TRP
228
A
TRP
228
1
12
13
A
ASP
238
A
ASP
238
HELX_P
A
PHE
245
A
PHE
245
1
13
8
A
THR
249
A
THR
249
HELX_P
A
ALA
257
A
ALA
257
1
14
9
A
GLU
258
A
GLU
258
HELX_P
A
LYS
261
A
LYS
261
5
15
4
A
TRP
263
A
TRP
263
HELX_P
A
TYR
273
A
TYR
273
1
16
11
B
ASP
11
B
ASP
11
HELX_P
B
ARG
22
B
ARG
22
1
17
12
B
ALA
65
B
ALA
65
HELX_P
B
PRO
69
B
PRO
69
5
18
5
B
VAL
70
B
VAL
70
HELX_P
B
PHE
82
B
PHE
82
1
19
13
B
ASN
87
B
ASN
87
HELX_P
B
GLY
96
B
GLY
96
1
20
10
B
ARG
97
B
ARG
97
HELX_P
B
ALA
100
B
ALA
100
5
21
4
B
ASP
112
B
ASP
112
HELX_P
B
GLY
123
B
GLY
123
1
22
12
B
SER
127
B
SER
127
HELX_P
B
GLY
143
B
GLY
143
1
23
17
B
THR
157
B
THR
157
HELX_P
B
ALA
163
B
ALA
163
1
24
7
B
GLN
167
B
GLN
167
HELX_P
B
MET
174
B
MET
174
1
25
8
B
PRO
175
B
PRO
175
HELX_P
B
GLY
192
B
GLY
192
1
26
18
B
ASP
201
B
ASP
201
HELX_P
B
THR
211
B
THR
211
1
27
11
B
GLY
216
B
GLY
216
HELX_P
B
TRP
228
B
TRP
228
1
28
13
B
ASP
238
B
ASP
238
HELX_P
B
PHE
245
B
PHE
245
1
29
8
B
ALA
251
B
ALA
251
HELX_P
B
GLU
258
B
GLU
258
1
30
8
B
ARG
259
B
ARG
259
HELX_P
B
LYS
261
B
LYS
261
5
31
3
B
TRP
263
B
TRP
263
HELX_P
B
TYR
273
B
TYR
273
1
32
11
C
ASP
11
C
ASP
11
HELX_P
C
ARG
22
C
ARG
22
1
33
12
C
ILE
54
C
ILE
54
HELX_P
C
ARG
56
C
ARG
56
5
34
3
C
LEU
67
C
LEU
67
HELX_P
C
PRO
69
C
PRO
69
5
35
3
C
VAL
70
C
VAL
70
HELX_P
C
PHE
82
C
PHE
82
1
36
13
C
ASN
87
C
ASN
87
HELX_P
C
GLY
96
C
GLY
96
1
37
10
C
ARG
97
C
ARG
97
HELX_P
C
ALA
100
C
ALA
100
5
38
4
C
ASP
112
C
ASP
112
HELX_P
C
GLY
123
C
GLY
123
1
39
12
C
SER
127
C
SER
127
HELX_P
C
GLY
143
C
GLY
143
1
40
17
C
THR
157
C
THR
157
HELX_P
C
ALA
164
C
ALA
164
1
41
8
C
ASP
165
C
ASP
165
HELX_P
C
LEU
172
C
LEU
172
1
42
8
C
PRO
175
C
PRO
175
HELX_P
C
GLY
192
C
GLY
192
1
43
18
C
ASP
201
C
ASP
201
HELX_P
C
GLN
210
C
GLN
210
1
44
10
C
GLY
216
C
GLY
216
HELX_P
C
TRP
228
C
TRP
228
1
45
13
C
ASP
238
C
ASP
238
HELX_P
C
PHE
245
C
PHE
245
1
46
8
C
THR
249
C
THR
249
HELX_P
C
ALA
257
C
ALA
257
1
47
9
C
GLU
258
C
GLU
258
HELX_P
C
LYS
261
C
LYS
261
5
48
4
C
TRP
263
C
TRP
263
HELX_P
C
TYR
273
C
TYR
273
1
49
11
D
ASP
11
D
ASP
11
HELX_P
D
ALA
23
D
ALA
23
1
50
13
D
LEU
67
D
LEU
67
HELX_P
D
PRO
69
D
PRO
69
5
51
3
D
VAL
70
D
VAL
70
HELX_P
D
PHE
82
D
PHE
82
1
52
13
D
ASN
87
D
ASN
87
HELX_P
D
GLY
96
D
GLY
96
1
53
10
D
ARG
97
D
ARG
97
HELX_P
D
ALA
100
D
ALA
100
5
54
4
D
ASP
112
D
ASP
112
HELX_P
D
LEU
122
D
LEU
122
1
55
11
D
SER
127
D
SER
127
HELX_P
D
GLY
143
D
GLY
143
1
56
17
D
THR
157
D
THR
157
HELX_P
D
ALA
163
D
ALA
163
1
57
7
D
ASP
165
D
ASP
165
HELX_P
D
ALA
171
D
ALA
171
1
58
7
D
PRO
175
D
PRO
175
HELX_P
D
GLU
191
D
GLU
191
1
59
17
D
ASP
201
D
ASP
201
HELX_P
D
PHE
212
D
PHE
212
1
60
12
D
GLY
216
D
GLY
216
HELX_P
D
TRP
228
D
TRP
228
1
61
13
D
ASP
238
D
ASP
238
HELX_P
D
PHE
245
D
PHE
245
1
62
8
D
THR
249
D
THR
249
HELX_P
D
GLU
258
D
GLU
258
1
63
10
D
ARG
259
D
ARG
259
HELX_P
D
LYS
261
D
LYS
261
5
64
3
D
TRP
263
D
TRP
263
HELX_P
D
TYR
273
D
TYR
273
1
65
11
covale
1.622
both
E
DT
5
E
O3'
DT
5
1_555
E
8OG
6
E
P
8OG
6
1_555
covale
1.593
both
E
8OG
6
E
O3'
8OG
6
1_555
E
DA
7
E
P
DA
7
1_555
covale
1.612
both
G
DT
5
G
O3'
DT
5
1_555
G
8OG
6
G
P
8OG
6
1_555
covale
1.597
both
G
8OG
6
G
O3'
8OG
6
1_555
G
DA
7
G
P
DA
7
1_555
hydrog
WATSON-CRICK
E
DG
1
E
N1
DG
1
1_555
F
DC
25
F
N3
DC
12
1_555
hydrog
WATSON-CRICK
E
DG
1
E
N2
DG
1
1_555
F
DC
25
F
O2
DC
12
1_555
hydrog
WATSON-CRICK
E
DG
1
E
O6
DG
1
1_555
F
DC
25
F
N4
DC
12
1_555
hydrog
TYPE_8_PAIR
E
DA
2
E
N1
DA
2
1_555
F
DG
23
F
N1
DG
10
1_555
hydrog
TYPE_8_PAIR
E
DA
2
E
N6
DA
2
1_555
F
DG
23
F
O6
DG
10
1_555
hydrog
WATSON-CRICK
E
DA
2
E
N1
DA
2
1_555
F
DT
24
F
N3
DT
11
1_555
hydrog
WATSON-CRICK
E
DA
2
E
N6
DA
2
1_555
F
DT
24
F
O4
DT
11
1_555
hydrog
WATSON-CRICK
E
DC
3
E
N3
DC
3
1_555
F
DG
23
F
N1
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
3
E
N4
DC
3
1_555
F
DG
23
F
O6
DG
10
1_555
hydrog
WATSON-CRICK
E
DC
3
E
O2
DC
3
1_555
F
DG
23
F
N2
DG
10
1_555
hydrog
WATSON-CRICK
E
DA
4
E
N1
DA
4
1_555
F
DT
22
F
N3
DT
9
1_555
hydrog
WATSON-CRICK
E
DA
4
E
N6
DA
4
1_555
F
DT
22
F
O4
DT
9
1_555
hydrog
WATSON-CRICK
E
DT
5
E
N3
DT
5
1_555
F
DA
21
F
N1
DA
8
1_555
hydrog
WATSON-CRICK
E
DT
5
E
O4
DT
5
1_555
F
DA
21
F
N6
DA
8
1_555
hydrog
WATSON-CRICK
E
8OG
6
E
N1
8OG
6
1_555
F
DC
20
F
N3
DC
7
1_555
hydrog
WATSON-CRICK
E
8OG
6
E
N2
8OG
6
1_555
F
DC
20
F
O2
DC
7
1_555
hydrog
WATSON-CRICK
E
8OG
6
E
O6
8OG
6
1_555
F
DC
20
F
N4
DC
7
1_555
hydrog
DA-DC MISPAIR
E
DA
7
E
N1
DA
7
1_555
F
DC
18
F
N4
DC
5
1_555
hydrog
WATSON-CRICK
E
DA
7
E
N1
DA
7
1_555
F
DT
19
F
N3
DT
6
1_555
hydrog
WATSON-CRICK
E
DA
7
E
N6
DA
7
1_555
F
DT
19
F
O4
DT
6
1_555
hydrog
WATSON-CRICK
E
DG
8
E
N1
DG
8
1_555
F
DC
18
F
N3
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
8
E
N2
DG
8
1_555
F
DC
18
F
O2
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
8
E
O6
DG
8
1_555
F
DC
18
F
N4
DC
5
1_555
hydrog
WATSON-CRICK
E
DT
9
E
N3
DT
9
1_555
F
DA
17
F
N1
DA
4
1_555
hydrog
WATSON-CRICK
E
DT
9
E
O4
DT
9
1_555
F
DA
17
F
N6
DA
4
1_555
hydrog
WATSON-CRICK
E
DG
10
E
N1
DG
10
1_555
F
DC
16
F
N3
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
10
E
N2
DG
10
1_555
F
DC
16
F
O2
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
10
E
O6
DG
10
1_555
F
DC
16
F
N4
DC
3
1_555
hydrog
WATSON-CRICK
E
DC
11
E
N3
DC
11
1_555
F
DG
15
F
N1
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
11
E
N4
DC
11
1_555
F
DG
15
F
O6
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
11
E
O2
DC
11
1_555
F
DG
15
F
N2
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
12
E
N3
DC
12
1_555
F
DG
14
F
N1
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
12
E
N4
DC
12
1_555
F
DG
14
F
O6
DG
1
1_555
hydrog
WATSON-CRICK
E
DC
12
E
O2
DC
12
1_555
F
DG
14
F
N2
DG
1
1_555
hydrog
WATSON-CRICK
G
DG
1
G
N1
DG
1
1_555
H
DC
25
H
N3
DC
12
1_555
hydrog
WATSON-CRICK
G
DG
1
G
N2
DG
1
1_555
H
DC
25
H
O2
DC
12
1_555
hydrog
WATSON-CRICK
G
DG
1
G
O6
DG
1
1_555
H
DC
25
H
N4
DC
12
1_555
hydrog
WATSON-CRICK
G
DA
2
G
N1
DA
2
1_555
H
DT
24
H
N3
DT
11
1_555
hydrog
WATSON-CRICK
G
DA
2
G
N6
DA
2
1_555
H
DT
24
H
O4
DT
11
1_555
hydrog
WATSON-CRICK
G
DC
3
G
N3
DC
3
1_555
H
DG
23
H
N1
DG
10
1_555
hydrog
WATSON-CRICK
G
DC
3
G
N4
DC
3
1_555
H
DG
23
H
O6
DG
10
1_555
hydrog
WATSON-CRICK
G
DC
3
G
O2
DC
3
1_555
H
DG
23
H
N2
DG
10
1_555
hydrog
WATSON-CRICK
G
DA
4
G
N1
DA
4
1_555
H
DT
22
H
N3
DT
9
1_555
hydrog
WATSON-CRICK
G
DA
4
G
N6
DA
4
1_555
H
DT
22
H
O4
DT
9
1_555
hydrog
WATSON-CRICK
G
DT
5
G
N3
DT
5
1_555
H
DA
21
H
N1
DA
8
1_555
hydrog
WATSON-CRICK
G
DT
5
G
O4
DT
5
1_555
H
DA
21
H
N6
DA
8
1_555
hydrog
WATSON-CRICK
G
8OG
6
G
N1
8OG
6
1_555
H
DC
20
H
N3
DC
7
1_555
hydrog
WATSON-CRICK
G
8OG
6
G
N2
8OG
6
1_555
H
DC
20
H
O2
DC
7
1_555
hydrog
WATSON-CRICK
G
8OG
6
G
O6
8OG
6
1_555
H
DC
20
H
N4
DC
7
1_555
hydrog
WATSON-CRICK
G
DA
7
G
N1
DA
7
1_555
H
DT
19
H
N3
DT
6
1_555
hydrog
WATSON-CRICK
G
DA
7
G
N6
DA
7
1_555
H
DT
19
H
O4
DT
6
1_555
hydrog
WATSON-CRICK
G
DG
8
G
N1
DG
8
1_555
H
DC
18
H
N3
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
8
G
N2
DG
8
1_555
H
DC
18
H
O2
DC
5
1_555
hydrog
WATSON-CRICK
G
DG
8
G
O6
DG
8
1_555
H
DC
18
H
N4
DC
5
1_555
hydrog
WATSON-CRICK
G
DT
9
G
N3
DT
9
1_555
H
DA
17
H
N1
DA
4
1_555
hydrog
WATSON-CRICK
G
DT
9
G
O4
DT
9
1_555
H
DA
17
H
N6
DA
4
1_555
hydrog
WATSON-CRICK
G
DG
10
G
N1
DG
10
1_555
H
DC
16
H
N3
DC
3
1_555
hydrog
WATSON-CRICK
G
DG
10
G
N2
DG
10
1_555
H
DC
16
H
O2
DC
3
1_555
hydrog
WATSON-CRICK
G
DG
10
G
O6
DG
10
1_555
H
DC
16
H
N4
DC
3
1_555
hydrog
WATSON-CRICK
G
DC
11
G
N3
DC
11
1_555
H
DG
15
H
N1
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
11
G
N4
DC
11
1_555
H
DG
15
H
O6
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
11
G
O2
DC
11
1_555
H
DG
15
H
N2
DG
2
1_555
hydrog
WATSON-CRICK
G
DC
12
G
N3
DC
12
1_555
H
DG
14
H
N1
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
12
G
N4
DC
12
1_555
H
DG
14
H
O6
DG
1
1_555
hydrog
WATSON-CRICK
G
DC
12
G
O2
DC
12
1_555
H
DG
14
H
N2
DG
1
1_555
hydrolase/DNA
AlkA, 8oxoguanine, DNA repair, host-guest complex, DNA structure, DNA damage, Hydrolase, hydrolase-DNA COMPLEX
A
PRO
8
A
PRO
8
1
A
PRO
9
A
PRO
9
-1.37
A
LYS
261
A
LYS
261
1
A
PRO
262
A
PRO
262
-0.37
B
PRO
8
B
PRO
8
1
B
PRO
9
B
PRO
9
-0.03
B
LYS
261
B
LYS
261
1
B
PRO
262
B
PRO
262
0.60
C
PRO
8
C
PRO
8
1
C
PRO
9
C
PRO
9
-0.10
C
LYS
261
C
LYS
261
1
C
PRO
262
C
PRO
262
1.63
D
PRO
8
D
PRO
8
1
D
PRO
9
D
PRO
9
-0.32
D
LYS
261
D
LYS
261
1
D
PRO
262
D
PRO
262
-1.53
3CVT
PDB
2
1
3CVT
GACATGAGTGCC
3CVT
PDB
3
1
3CVT
GGCACTCATGTC
3MG2_ECOLI
UNP
1
1
P04395
MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSR
LFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQR
LAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL
IKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
1
12
3CVT
1
12
3CVT
E
1
1
12
14
25
3CVT
14
25
3CVT
F
2
1
12
1
12
3CVT
1
12
3CVT
G
1
1
12
14
25
3CVT
14
25
3CVT
H
2
1
12
1
282
3CVT
1
282
P04395
A
3
1
282
1
282
3CVT
1
282
P04395
B
3
1
282
1
282
3CVT
1
282
P04395
C
3
1
282
1
282
3CVT
1
282
P04395
D
3
1
282
5
2
5
2
5
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
2
A
TYR
2
A
ASN
5
A
ASN
5
A
THR
58
A
THR
58
A
LEU
63
A
LEU
63
A
TYR
44
A
TYR
44
A
ASP
53
A
ASP
53
A
TYR
35
A
TYR
35
A
VAL
41
A
VAL
41
A
GLU
28
A
GLU
28
A
VAL
30
A
VAL
30
A
ARG
145
A
ARG
145
A
LEU
146
A
LEU
146
A
PHE
149
A
PHE
149
A
ILE
153
A
ILE
153
B
TYR
2
B
TYR
2
B
ASN
5
B
ASN
5
B
THR
58
B
THR
58
B
LEU
63
B
LEU
63
B
TYR
44
B
TYR
44
B
ASP
53
B
ASP
53
B
TYR
35
B
TYR
35
B
VAL
41
B
VAL
41
B
GLU
28
B
GLU
28
B
VAL
30
B
VAL
30
B
GLU
144
B
GLU
144
B
ARG
145
B
ARG
145
B
ILE
153
B
ILE
153
B
CYS
154
B
CYS
154
C
TYR
2
C
TYR
2
C
ASN
5
C
ASN
5
C
THR
58
C
THR
58
C
LEU
63
C
LEU
63
C
TYR
44
C
TYR
44
C
ASP
53
C
ASP
53
C
TYR
35
C
TYR
35
C
VAL
41
C
VAL
41
C
GLU
28
C
GLU
28
C
VAL
30
C
VAL
30
C
GLU
144
C
GLU
144
C
LEU
146
C
LEU
146
C
PHE
149
C
PHE
149
C
CYS
154
C
CYS
154
D
TYR
2
D
TYR
2
D
ASN
5
D
ASN
5
D
THR
58
D
THR
58
D
LEU
63
D
LEU
63
D
TYR
44
D
TYR
44
D
ASP
53
D
ASP
53
D
TYR
35
D
TYR
35
D
VAL
41
D
VAL
41
D
GLU
28
D
GLU
28
D
VAL
30
D
VAL
30
4
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