0.019038
0.010991
0.000000
0.000000
0.021983
0.000000
0.000000
0.000000
0.006396
0.00000
0.00000
0.00000
Kuzuhara, T.
Kise, D.
Yoshida, H.
Horita, T.
Murasaki, Y.
Utsunomiya, H.
Fujiki, H.
Tsuge, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
52.527
52.527
156.357
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
S
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
N
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
S
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
O
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
R
C
N
274
N
O
N
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
N
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
Y
214
N
doub
Y
215
N
sing
Y
216
N
sing
N
217
N
sing
Y
218
N
doub
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
sing
Y
292
N
doub
N
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
sing
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
6855
6860
10.1074/jbc.C800224200
19144639
Structural basis of the influenza A virus RNA polymerase PB2 RNA-binding domain containing the pathogenicity-determinant lysine 627 residue
2009
10.2210/pdb3cw4/pdb
pdb_00003cw4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-11-21
ADSC QUANTUM 210
MAD
M
x-ray
1
1.07172
1.0
1.07204
1.0
1.05382
1.0
AR-NW12A
Photon Factory
1.07172, 1.07204, 1.05382
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
25295.215
Polymerase basic protein 2
2.7.-.-
Large c-terminal domain PB2, UNP residues 535-759
1
man
polymer
18.015
water
86
nat
water
RNA-directed RNA polymerase subunit P3
no
no
MMWEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTAQ
IIKLLPFAAAPPKQSRMQFSSFTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGTLTEDPDEGTAGVESAVLRGF
LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN
MMWEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTAQ
IIKLLPFAAAPPKQSRMQFSSFTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGTLTEDPDEGTAGVESAVLRGF
LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
11320
Influenza A virus
562
Escherichia coli
B834(DE3)
plasmid
pET28a
1
2.46
50.03
VAPOR DIFFUSION, HANGING DROP
6.0
2.2M formate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Database references
Data collection
Database references
1
0
2009-01-13
1
1
2011-07-13
1
2
2011-11-09
1
3
2024-03-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
PDBJ
2008-04-21
REL
REL
HOH
water
HOH
1
2
HOH
HOH
226
A
HOH
2
2
HOH
HOH
227
A
HOH
3
2
HOH
HOH
228
A
HOH
4
2
HOH
HOH
229
A
HOH
5
2
HOH
HOH
230
A
HOH
6
2
HOH
HOH
231
A
HOH
7
2
HOH
HOH
232
A
HOH
8
2
HOH
HOH
233
A
HOH
9
2
HOH
HOH
234
A
HOH
10
2
HOH
HOH
235
A
HOH
11
2
HOH
HOH
236
A
HOH
12
2
HOH
HOH
237
A
HOH
13
2
HOH
HOH
238
A
HOH
14
2
HOH
HOH
239
A
HOH
15
2
HOH
HOH
240
A
HOH
16
2
HOH
HOH
241
A
HOH
17
2
HOH
HOH
242
A
HOH
18
2
HOH
HOH
243
A
HOH
19
2
HOH
HOH
244
A
HOH
20
2
HOH
HOH
245
A
HOH
21
2
HOH
HOH
246
A
HOH
22
2
HOH
HOH
247
A
HOH
23
2
HOH
HOH
248
A
HOH
24
2
HOH
HOH
249
A
HOH
25
2
HOH
HOH
250
A
HOH
26
2
HOH
HOH
251
A
HOH
27
2
HOH
HOH
252
A
HOH
28
2
HOH
HOH
253
A
HOH
29
2
HOH
HOH
254
A
HOH
30
2
HOH
HOH
255
A
HOH
31
2
HOH
HOH
256
A
HOH
32
2
HOH
HOH
257
A
HOH
33
2
HOH
HOH
258
A
HOH
34
2
HOH
HOH
259
A
HOH
35
2
HOH
HOH
260
A
HOH
36
2
HOH
HOH
261
A
HOH
37
2
HOH
HOH
262
A
HOH
38
2
HOH
HOH
263
A
HOH
39
2
HOH
HOH
264
A
HOH
40
2
HOH
HOH
265
A
HOH
41
2
HOH
HOH
266
A
HOH
42
2
HOH
HOH
267
A
HOH
43
2
HOH
HOH
268
A
HOH
44
2
HOH
HOH
269
A
HOH
45
2
HOH
HOH
270
A
HOH
46
2
HOH
HOH
271
A
HOH
47
2
HOH
HOH
272
A
HOH
48
2
HOH
HOH
273
A
HOH
49
2
HOH
HOH
274
A
HOH
50
2
HOH
HOH
275
A
HOH
51
2
HOH
HOH
276
A
HOH
52
2
HOH
HOH
277
A
HOH
53
2
HOH
HOH
278
A
HOH
54
2
HOH
HOH
279
A
HOH
55
2
HOH
HOH
280
A
HOH
56
2
HOH
HOH
281
A
HOH
57
2
HOH
HOH
282
A
HOH
58
2
HOH
HOH
283
A
HOH
59
2
HOH
HOH
284
A
HOH
60
2
HOH
HOH
285
A
HOH
61
2
HOH
HOH
286
A
HOH
62
2
HOH
HOH
287
A
HOH
63
2
HOH
HOH
288
A
HOH
64
2
HOH
HOH
289
A
HOH
65
2
HOH
HOH
290
A
HOH
66
2
HOH
HOH
291
A
HOH
67
2
HOH
HOH
292
A
HOH
68
2
HOH
HOH
293
A
HOH
69
2
HOH
HOH
294
A
HOH
70
2
HOH
HOH
295
A
HOH
71
2
HOH
HOH
296
A
HOH
72
2
HOH
HOH
297
A
HOH
73
2
HOH
HOH
298
A
HOH
74
2
HOH
HOH
299
A
HOH
75
2
HOH
HOH
300
A
HOH
76
2
HOH
HOH
301
A
HOH
77
2
HOH
HOH
302
A
HOH
78
2
HOH
HOH
303
A
HOH
79
2
HOH
HOH
304
A
HOH
80
2
HOH
HOH
305
A
HOH
81
2
HOH
HOH
306
A
HOH
82
2
HOH
HOH
307
A
HOH
83
2
HOH
HOH
308
A
HOH
84
2
HOH
HOH
309
A
HOH
85
2
HOH
HOH
310
A
HOH
86
2
HOH
HOH
311
A
MET
1
n
1
MET
1
A
MET
2
n
2
MET
2
A
TRP
3
n
3
TRP
3
A
GLU
4
n
4
GLU
4
A
ILE
5
n
5
ILE
5
A
ASN
6
n
6
ASN
6
A
GLY
7
n
7
GLY
7
A
PRO
8
n
8
PRO
8
A
GLU
9
n
9
GLU
9
A
SER
10
n
10
SER
10
A
VAL
11
n
11
VAL
11
A
LEU
12
n
12
LEU
12
A
VAL
13
n
13
VAL
13
A
ASN
14
n
14
ASN
14
A
THR
15
n
15
THR
15
A
TYR
16
n
16
TYR
16
A
GLN
17
n
17
GLN
17
A
TRP
18
n
18
TRP
18
A
ILE
19
n
19
ILE
19
A
ILE
20
n
20
ILE
20
A
ARG
21
n
21
ARG
21
A
ASN
22
n
22
ASN
22
A
TRP
23
n
23
TRP
23
A
GLU
24
n
24
GLU
24
A
THR
25
n
25
THR
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ILE
28
n
28
ILE
28
A
GLN
29
n
29
GLN
29
A
TRP
30
n
30
TRP
30
A
SER
31
n
31
SER
31
A
GLN
32
n
32
GLN
32
A
ASN
33
n
33
ASN
33
A
PRO
34
n
34
PRO
34
A
THR
35
n
35
THR
35
A
MET
36
n
36
MET
36
A
LEU
37
n
37
LEU
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
LYS
40
n
40
LYS
40
A
MET
41
n
41
MET
41
A
GLU
42
n
42
GLU
42
A
PHE
43
n
43
PHE
43
A
GLU
44
n
44
GLU
44
A
PRO
45
n
45
PRO
45
A
PHE
46
n
46
PHE
46
A
GLN
47
n
47
GLN
47
A
SER
48
n
48
SER
48
A
LEU
49
n
49
LEU
49
A
VAL
50
n
50
VAL
50
A
PRO
51
n
51
PRO
51
A
LYS
52
n
52
LYS
52
A
ALA
53
n
53
ALA
53
A
ILE
54
n
54
ILE
54
A
ARG
55
n
55
ARG
55
A
GLY
56
n
56
GLY
56
A
GLN
57
n
57
GLN
57
A
TYR
58
n
58
TYR
58
A
SER
59
n
59
SER
59
A
GLY
60
n
60
GLY
60
A
PHE
61
n
61
PHE
61
A
VAL
62
n
62
VAL
62
A
ARG
63
n
63
ARG
63
A
THR
64
n
64
THR
64
A
LEU
65
n
65
LEU
65
A
PHE
66
n
66
PHE
66
A
GLN
67
n
67
GLN
67
A
GLN
68
n
68
GLN
68
A
MET
69
n
69
MET
69
A
ARG
70
n
70
ARG
70
A
ASP
71
n
71
ASP
71
A
VAL
72
n
72
VAL
72
A
LEU
73
n
73
LEU
73
A
GLY
74
n
74
GLY
74
A
THR
75
n
75
THR
75
A
PHE
76
n
76
PHE
76
A
ASP
77
n
77
ASP
77
A
THR
78
n
78
THR
78
A
ALA
79
n
79
ALA
79
A
GLN
80
n
80
GLN
80
A
ILE
81
n
81
ILE
81
A
ILE
82
n
82
ILE
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
PRO
86
n
86
PRO
86
A
PHE
87
n
87
PHE
87
A
ALA
88
n
88
ALA
88
A
ALA
89
n
89
ALA
89
A
ALA
90
n
90
ALA
90
A
PRO
91
n
91
PRO
91
A
PRO
92
n
92
PRO
92
A
LYS
93
n
93
LYS
93
A
GLN
94
n
94
GLN
94
A
SER
95
n
95
SER
95
A
ARG
96
n
96
ARG
96
A
MET
97
n
97
MET
97
A
GLN
98
n
98
GLN
98
A
PHE
99
n
99
PHE
99
A
SER
100
n
100
SER
100
A
SER
101
n
101
SER
101
A
PHE
102
n
102
PHE
102
A
THR
103
n
103
THR
103
A
VAL
104
n
104
VAL
104
A
ASN
105
n
105
ASN
105
A
VAL
106
n
106
VAL
106
A
ARG
107
n
107
ARG
107
A
GLY
108
n
108
GLY
108
A
SER
109
n
109
SER
109
A
GLY
110
n
110
GLY
110
A
MET
111
n
111
MET
111
A
ARG
112
n
112
ARG
112
A
ILE
113
n
113
ILE
113
A
LEU
114
n
114
LEU
114
A
VAL
115
n
115
VAL
115
A
ARG
116
n
116
ARG
116
A
GLY
117
n
117
GLY
117
A
ASN
118
n
118
ASN
118
A
SER
119
n
119
SER
119
A
PRO
120
n
120
PRO
120
A
VAL
121
n
121
VAL
121
A
PHE
122
n
122
PHE
122
A
ASN
123
n
123
ASN
123
A
TYR
124
n
124
TYR
124
A
ASN
125
n
125
ASN
125
A
LYS
126
n
126
LYS
126
A
ALA
127
n
127
ALA
127
A
THR
128
n
128
THR
128
A
LYS
129
n
129
LYS
129
A
ARG
130
n
130
ARG
130
A
LEU
131
n
131
LEU
131
A
THR
132
n
132
THR
132
A
VAL
133
n
133
VAL
133
A
LEU
134
n
134
LEU
134
A
GLY
135
n
135
GLY
135
A
LYS
136
n
136
LYS
136
A
ASP
137
n
137
ASP
137
A
ALA
138
n
138
ALA
138
A
GLY
139
n
139
GLY
139
A
THR
140
n
140
THR
140
A
LEU
141
n
141
LEU
141
A
THR
142
n
142
THR
142
A
GLU
143
n
143
GLU
143
A
ASP
144
n
144
ASP
144
A
PRO
145
n
145
PRO
145
A
ASP
146
n
146
ASP
146
A
GLU
147
n
147
GLU
147
A
GLY
148
n
148
GLY
148
A
THR
149
n
149
THR
149
A
ALA
150
n
150
ALA
150
A
GLY
151
n
151
GLY
151
A
VAL
152
n
152
VAL
152
A
GLU
153
n
153
GLU
153
A
SER
154
n
154
SER
154
A
ALA
155
n
155
ALA
155
A
VAL
156
n
156
VAL
156
A
LEU
157
n
157
LEU
157
A
ARG
158
n
158
ARG
158
A
GLY
159
n
159
GLY
159
A
PHE
160
n
160
PHE
160
A
LEU
161
n
161
LEU
161
A
ILE
162
n
162
ILE
162
A
LEU
163
n
163
LEU
163
A
GLY
164
n
164
GLY
164
A
LYS
165
n
165
LYS
165
A
GLU
166
n
166
GLU
166
A
ASP
167
n
167
ASP
167
A
LYS
168
n
168
LYS
168
A
ARG
169
n
169
ARG
169
A
TYR
170
n
170
TYR
170
A
GLY
171
n
171
GLY
171
A
PRO
172
n
172
PRO
172
A
ALA
173
n
173
ALA
173
A
LEU
174
n
174
LEU
174
A
SER
175
n
175
SER
175
A
ILE
176
n
176
ILE
176
A
ASN
177
n
177
ASN
177
A
GLU
178
n
178
GLU
178
A
LEU
179
n
179
LEU
179
A
SER
180
n
180
SER
180
A
ASN
181
n
181
ASN
181
A
LEU
182
n
182
LEU
182
A
ALA
183
n
183
ALA
183
A
LYS
184
n
184
LYS
184
A
GLY
185
n
185
GLY
185
A
GLU
186
n
186
GLU
186
A
LYS
187
n
187
LYS
187
A
ALA
188
n
188
ALA
188
A
ASN
189
n
189
ASN
189
A
VAL
190
n
190
VAL
190
A
LEU
191
n
191
LEU
191
A
ILE
192
n
192
ILE
192
A
GLY
193
n
193
GLY
193
A
GLN
194
n
194
GLN
194
A
GLY
195
n
195
GLY
195
A
ASP
196
n
196
ASP
196
A
VAL
197
n
197
VAL
197
A
VAL
198
n
198
VAL
198
A
LEU
199
n
199
LEU
199
A
VAL
200
n
200
VAL
200
A
MET
201
n
201
MET
201
A
LYS
202
n
202
LYS
202
A
ARG
203
n
203
ARG
203
A
LYS
204
n
204
LYS
204
A
ARG
205
n
205
ARG
205
A
ASP
206
n
206
ASP
206
A
SER
207
n
207
SER
207
A
SER
208
n
208
SER
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
212
212
A
n
213
213
A
n
214
214
A
n
215
215
A
n
216
216
A
n
217
217
A
n
218
218
A
n
219
219
A
n
220
220
A
n
221
221
A
n
222
222
A
n
223
223
A
n
224
224
A
n
225
225
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
104
A
N
VAL
104
A
O
MET
111
A
O
MET
111
A
N
ASN
123
A
N
ASN
123
A
O
THR
132
A
O
THR
132
A
N
LEU
131
A
N
LEU
131
A
O
ALA
138
A
O
ALA
138
A
N
LEU
163
A
N
LEU
163
A
O
LEU
199
A
O
LEU
199
A
O
VAL
200
A
O
VAL
200
A
N
ALA
188
A
N
ALA
188
1
A
ILE
209
A
ILE
209
1
Y
1
A
LEU
210
A
LEU
210
1
Y
1
A
THR
211
A
THR
211
1
Y
1
A
ASP
212
A
ASP
212
1
Y
1
A
SER
213
A
SER
213
1
Y
1
A
GLN
214
A
GLN
214
1
Y
1
A
THR
215
A
THR
215
1
Y
1
A
ALA
216
A
ALA
216
1
Y
1
A
THR
217
A
THR
217
1
Y
1
A
LYS
218
A
LYS
218
1
Y
1
A
ARG
219
A
ARG
219
1
Y
1
A
ILE
220
A
ILE
220
1
Y
1
A
ARG
221
A
ARG
221
1
Y
1
A
MET
222
A
MET
222
1
Y
1
A
ALA
223
A
ALA
223
1
Y
1
A
ILE
224
A
ILE
224
1
Y
1
A
ASN
225
A
ASN
225
1
Y
1
A
A
OE1
O
GLU
HOH
166
270
1.83
1
A
A
O
O
LEU
HOH
182
300
2.14
1
A
A
OE2
O
GLU
HOH
147
290
2.14
1
6.78
0.90
118.30
125.08
A
A
A
CB
CG
OD2
ASP
ASP
ASP
137
137
137
N
1
-11.96
1.90
111.40
99.44
A
A
A
CB
CA
C
VAL
VAL
VAL
190
190
190
N
1
5.95
0.90
118.30
124.25
A
A
A
CB
CG
OD2
ASP
ASP
ASP
206
206
206
N
1
A
PRO
8
-20.66
-73.38
1
A
LEU
12
-51.53
-70.49
1
A
GLU
42
-58.62
-7.78
1
A
ARG
55
4.42
-72.56
1
A
PHE
87
-59.83
-7.02
1
A
VAL
106
-104.60
-71.65
1
A
SER
109
-137.12
-46.43
1
A
PHE
122
-163.37
103.06
1
A
VAL
133
-73.29
-143.25
1
A
LEU
134
-49.46
87.64
1
A
ASP
146
-94.07
36.04
1
A
ARG
169
-39.06
-16.10
1
A
ALA
173
-38.60
135.79
1
A
GLN
194
54.77
-135.67
1
A
SER
207
-24.48
-56.53
49.776
2.57
1.28
0.00
2.57
0.00
-3.85
0.919
0.884
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.29041
0.23741
0.23995
2.70
34.27
335
7319
6940
4.6
98.74
15.070
0.296
RANDOM
1
THROUGHOUT
MAD
5.141
0.399
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.70
34.27
86
1728
0
0
1642
0.025
0.022
1674
0.002
0.020
1554
2.063
1.957
2260
2.088
3.000
3617
9.087
5.000
207
0.120
0.200
250
0.006
0.020
1842
0.003
0.020
339
0.254
0.200
494
0.271
0.200
2013
0.099
0.200
1072
0.235
0.200
91
0.197
0.200
9
0.283
0.200
47
0.244
0.200
7
1.218
1.500
1032
1.920
2.000
1668
1.998
3.000
642
3.485
4.500
592
0.505
0.314
2.772
19
513
20
2.7
50
3CW4
7319
7328
1.0
1
98.8
2.7
2.8
1
100
refinement
REFMAC
5.1.24
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SOLVE
Large c-terminal domain of influenza a virus RNA-dependent polymerase PB2
1
N
N
2
N
N
A
MET
1
A
MET
1
HELX_P
A
ILE
5
A
ILE
5
5
1
5
A
ASN
6
A
ASN
6
HELX_P
A
ASN
22
A
ASN
22
1
2
17
A
ASN
22
A
ASN
22
HELX_P
A
ASN
33
A
ASN
33
1
3
12
A
ASN
33
A
ASN
33
HELX_P
A
ASN
39
A
ASN
39
1
4
7
A
LYS
40
A
LYS
40
HELX_P
A
GLU
42
A
GLU
42
5
5
3
A
PHE
43
A
PHE
43
HELX_P
A
LEU
49
A
LEU
49
1
6
7
A
ILE
54
A
ILE
54
HELX_P
A
VAL
72
A
VAL
72
1
7
19
A
ASP
77
A
ASP
77
HELX_P
A
LEU
85
A
LEU
85
1
8
9
A
PRO
86
A
PRO
86
HELX_P
A
ALA
89
A
ALA
89
5
9
4
A
ASP
167
A
ASP
167
HELX_P
A
GLY
171
A
GLY
171
5
10
5
A
SER
175
A
SER
175
HELX_P
A
ASN
181
A
ASN
181
5
11
7
TRANSFERASE
RNA polymerase, Mitochondrion, mRNA capping, mRNA processing, Nucleus, Virion, TRANSFERASE
PB2_I34A1
UNP
1
535
P03428
MMWEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTAQ
IIKLLPFAAAPPKQSRMQFSSFTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGTLTEDPDEGTAGVESAVLRGF
LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN
535
759
3CW4
1
225
P03428
A
1
1
225
2
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
101
A
SER
101
A
VAL
104
A
VAL
104
A
MET
111
A
MET
111
A
LEU
114
A
LEU
114
A
ASN
123
A
ASN
123
A
TYR
124
A
TYR
124
A
ARG
130
A
ARG
130
A
THR
132
A
THR
132
A
ASP
137
A
ASP
137
A
THR
140
A
THR
140
A
PHE
160
A
PHE
160
A
LYS
165
A
LYS
165
A
ASP
196
A
ASP
196
A
LYS
202
A
LYS
202
A
LYS
187
A
LYS
187
A
GLY
193
A
GLY
193
154
P 32 2 1