0.010166
0.005869
0.000000
0.000000
0.011738
0.000000
0.000000
0.000000
0.012295
0.000000
0.000000
0.000000
Filippakopoulos, P.
Bullock, A.
Fedorov, O.
Huber, K.
Bracher, F.
Pike, A.C.W.
Roos, A.
von Delft, F.
Arrowsmith, C.H.
Edwards, A.M.
Bountra, C.
Knapp, S.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
98.371
98.371
81.332
C18 H18 Cl2 N4 O
377.268
(4R)-7,8-dichloro-1',9-dimethyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
N
N
9
N
C
N
10
N
O
Y
11
N
C
Y
12
N
N
N
13
N
C
Y
14
N
C
Y
15
N
C
N
16
N
CL
Y
17
N
C
N
18
N
CL
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
N
23
R
C
N
24
N
C
N
25
N
N
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
N
N
45
S
C
N
46
N
C
N
47
N
O
N
48
N
C
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
N
N
65
N
C
N
66
N
N
N
67
N
N
N
68
N
O
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
N
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
O
N
108
N
O
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
CL
N
118
N
N
N
119
R
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
S
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
S
C
N
134
N
C
N
135
N
O
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
Y
186
N
C
Y
187
N
N
Y
188
N
C
Y
189
N
C
Y
190
N
N
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
S
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
N
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
S
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
Y
13
N
sing
Y
14
N
doub
N
15
N
sing
Y
16
N
sing
Y
17
N
doub
Y
18
N
sing
N
19
N
sing
Y
20
N
sing
N
21
N
sing
Y
22
N
doub
Y
23
N
sing
Y
24
N
doub
Y
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
trip
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
Y
186
N
sing
Y
187
N
doub
Y
188
N
doub
N
189
N
sing
Y
190
N
sing
N
191
N
sing
Y
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
403
413
10.1021/jm201286z
22136433
7,8-Dichloro-1-oxo-beta-carbolines as a Versatile Scaffold for the Development of Potent and Selective Kinase Inhibitors with Unusual Binding Modes
2012
10.2210/pdb3cxw/pdb
pdb_00003cxw
100
1
CCD
2007-12-08
MARMOSAIC 225 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97912
1.0
6.30
100036
0.126
1.57
2.100
50.000
26203
100.00
3.80
X10SA
SLS
0.97912
SYNCHROTRON
SLS BEAMLINE X10SA
35719.680
Proto-oncogene serine/threonine-protein kinase Pim-1, Isoform 2
2.7.11.1
1
man
polymer
1592.850
Pimtide peptide
1
syn
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
377.268
(4R)-7,8-dichloro-1',9-dimethyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile
1
syn
non-polymer
18.015
water
217
nat
water
no
no
SMLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGE
LPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH
NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD
IPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
SMLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGE
LPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH
NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD
IPFEHDEEIIGGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
A
polypeptide(L)
no
no
ARKRRRHPSGPPTA
ARKRRRHPSGPPTA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)-R3
Plasmid
pNIC28-Bsa4
1
3.04
59.60
VAPOR DIFFUSION, SITTING DROP
7.5
0.14 M Sodium malonate, 0.07 M Bis-Tris-Propane pH 7.5, 14 % PEG 3350, 7 % Ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Structural Genomics Consortium
SGC
pdbx_struct_assembly_auth_evidence
software
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Advisory
Version format compliance
Database references
Database references
Author supporting evidence
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2008-07-15
1
1
2011-07-13
1
2
2012-01-18
1
3
2013-06-19
1
4
2017-10-25
1
5
2021-10-20
1
6
2023-08-30
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a beta carboline ligand II
Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and the JNK inhibitor V
Y
RCSB
Y
RCSB
2008-04-25
REL
REL
0.063
2.551
99.70
3.70
0.077
2.851
100.00
3.80
0.096
2.116
100.00
3.80
0.134
1.508
100.00
3.80
0.188
1.246
100.00
3.80
0.258
1.147
100.00
3.80
0.334
1.073
100.00
3.80
0.409
1.068
100.00
3.80
0.569
1.081
100.00
3.80
0.724
1.035
100.00
3.80
CL
CHLORIDE ION
7CP
(4R)-7,8-dichloro-1',9-dimethyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile
HOH
water
Synthetic peptide
sample
2C3I
PDB entry 2C3I
PDB
experimental model
CL
401
3
CL
CL
401
A
7CP
501
4
7CP
7CP
501
A
HOH
601
5
HOH
HOH
601
A
HOH
6
5
HOH
HOH
602
A
HOH
7
5
HOH
HOH
603
A
HOH
8
5
HOH
HOH
604
A
HOH
10
5
HOH
HOH
605
A
HOH
11
5
HOH
HOH
606
A
HOH
12
5
HOH
HOH
607
A
HOH
13
5
HOH
HOH
608
A
HOH
17
5
HOH
HOH
609
A
HOH
18
5
HOH
HOH
610
A
HOH
19
5
HOH
HOH
611
A
HOH
21
5
HOH
HOH
612
A
HOH
22
5
HOH
HOH
613
A
HOH
24
5
HOH
HOH
614
A
HOH
29
5
HOH
HOH
615
A
HOH
30
5
HOH
HOH
616
A
HOH
32
5
HOH
HOH
617
A
HOH
35
5
HOH
HOH
618
A
HOH
36
5
HOH
HOH
619
A
HOH
38
5
HOH
HOH
620
A
HOH
42
5
HOH
HOH
621
A
HOH
44
5
HOH
HOH
622
A
HOH
49
5
HOH
HOH
623
A
HOH
50
5
HOH
HOH
624
A
HOH
51
5
HOH
HOH
625
A
HOH
52
5
HOH
HOH
626
A
HOH
54
5
HOH
HOH
627
A
HOH
55
5
HOH
HOH
628
A
HOH
58
5
HOH
HOH
629
A
HOH
60
5
HOH
HOH
630
A
HOH
61
5
HOH
HOH
631
A
HOH
62
5
HOH
HOH
632
A
HOH
65
5
HOH
HOH
633
A
HOH
66
5
HOH
HOH
634
A
HOH
68
5
HOH
HOH
635
A
HOH
69
5
HOH
HOH
636
A
HOH
71
5
HOH
HOH
637
A
HOH
73
5
HOH
HOH
638
A
HOH
74
5
HOH
HOH
639
A
HOH
75
5
HOH
HOH
640
A
HOH
76
5
HOH
HOH
641
A
HOH
78
5
HOH
HOH
642
A
HOH
79
5
HOH
HOH
643
A
HOH
80
5
HOH
HOH
644
A
HOH
81
5
HOH
HOH
645
A
HOH
82
5
HOH
HOH
646
A
HOH
83
5
HOH
HOH
647
A
HOH
84
5
HOH
HOH
648
A
HOH
85
5
HOH
HOH
649
A
HOH
86
5
HOH
HOH
650
A
HOH
87
5
HOH
HOH
651
A
HOH
90
5
HOH
HOH
652
A
HOH
91
5
HOH
HOH
653
A
HOH
92
5
HOH
HOH
654
A
HOH
94
5
HOH
HOH
655
A
HOH
97
5
HOH
HOH
656
A
HOH
98
5
HOH
HOH
657
A
HOH
99
5
HOH
HOH
658
A
HOH
101
5
HOH
HOH
659
A
HOH
104
5
HOH
HOH
660
A
HOH
106
5
HOH
HOH
661
A
HOH
108
5
HOH
HOH
662
A
HOH
109
5
HOH
HOH
663
A
HOH
112
5
HOH
HOH
664
A
HOH
113
5
HOH
HOH
665
A
HOH
114
5
HOH
HOH
666
A
HOH
115
5
HOH
HOH
667
A
HOH
117
5
HOH
HOH
668
A
HOH
118
5
HOH
HOH
669
A
HOH
120
5
HOH
HOH
670
A
HOH
121
5
HOH
HOH
671
A
HOH
122
5
HOH
HOH
672
A
HOH
123
5
HOH
HOH
673
A
HOH
124
5
HOH
HOH
674
A
HOH
127
5
HOH
HOH
675
A
HOH
128
5
HOH
HOH
676
A
HOH
129
5
HOH
HOH
677
A
HOH
130
5
HOH
HOH
678
A
HOH
141
5
HOH
HOH
679
A
HOH
147
5
HOH
HOH
680
A
HOH
152
5
HOH
HOH
681
A
HOH
154
5
HOH
HOH
682
A
HOH
155
5
HOH
HOH
683
A
HOH
156
5
HOH
HOH
684
A
HOH
157
5
HOH
HOH
685
A
HOH
158
5
HOH
HOH
686
A
HOH
159
5
HOH
HOH
687
A
HOH
161
5
HOH
HOH
688
A
HOH
162
5
HOH
HOH
689
A
HOH
163
5
HOH
HOH
690
A
HOH
165
5
HOH
HOH
691
A
HOH
166
5
HOH
HOH
692
A
HOH
167
5
HOH
HOH
693
A
HOH
171
5
HOH
HOH
694
A
HOH
172
5
HOH
HOH
695
A
HOH
173
5
HOH
HOH
696
A
HOH
174
5
HOH
HOH
697
A
HOH
176
5
HOH
HOH
698
A
HOH
177
5
HOH
HOH
699
A
HOH
180
5
HOH
HOH
700
A
HOH
182
5
HOH
HOH
701
A
HOH
183
5
HOH
HOH
702
A
HOH
185
5
HOH
HOH
703
A
HOH
186
5
HOH
HOH
704
A
HOH
187
5
HOH
HOH
705
A
HOH
189
5
HOH
HOH
706
A
HOH
192
5
HOH
HOH
707
A
HOH
193
5
HOH
HOH
708
A
HOH
194
5
HOH
HOH
709
A
HOH
195
5
HOH
HOH
710
A
HOH
198
5
HOH
HOH
711
A
HOH
200
5
HOH
HOH
712
A
HOH
201
5
HOH
HOH
713
A
HOH
202
5
HOH
HOH
714
A
HOH
203
5
HOH
HOH
715
A
HOH
205
5
HOH
HOH
716
A
HOH
206
5
HOH
HOH
717
A
HOH
207
5
HOH
HOH
718
A
HOH
208
5
HOH
HOH
719
A
HOH
212
5
HOH
HOH
720
A
HOH
214
5
HOH
HOH
721
A
HOH
215
5
HOH
HOH
722
A
HOH
216
5
HOH
HOH
723
A
HOH
217
5
HOH
HOH
724
A
HOH
218
5
HOH
HOH
725
A
HOH
221
5
HOH
HOH
726
A
HOH
224
5
HOH
HOH
727
A
HOH
227
5
HOH
HOH
728
A
HOH
228
5
HOH
HOH
729
A
HOH
229
5
HOH
HOH
730
A
HOH
230
5
HOH
HOH
731
A
HOH
235
5
HOH
HOH
732
A
HOH
236
5
HOH
HOH
733
A
HOH
237
5
HOH
HOH
734
A
HOH
238
5
HOH
HOH
735
A
HOH
239
5
HOH
HOH
736
A
HOH
240
5
HOH
HOH
737
A
HOH
242
5
HOH
HOH
738
A
HOH
245
5
HOH
HOH
739
A
HOH
246
5
HOH
HOH
740
A
HOH
249
5
HOH
HOH
741
A
HOH
251
5
HOH
HOH
742
A
HOH
253
5
HOH
HOH
743
A
HOH
254
5
HOH
HOH
744
A
HOH
255
5
HOH
HOH
745
A
HOH
261
5
HOH
HOH
746
A
HOH
266
5
HOH
HOH
747
A
HOH
267
5
HOH
HOH
748
A
HOH
268
5
HOH
HOH
749
A
HOH
269
5
HOH
HOH
750
A
HOH
270
5
HOH
HOH
751
A
HOH
271
5
HOH
HOH
752
A
HOH
276
5
HOH
HOH
753
A
HOH
277
5
HOH
HOH
754
A
HOH
278
5
HOH
HOH
755
A
HOH
279
5
HOH
HOH
756
A
HOH
280
5
HOH
HOH
757
A
HOH
281
5
HOH
HOH
758
A
HOH
282
5
HOH
HOH
759
A
HOH
284
5
HOH
HOH
760
A
HOH
285
5
HOH
HOH
761
A
HOH
286
5
HOH
HOH
762
A
HOH
287
5
HOH
HOH
763
A
HOH
288
5
HOH
HOH
764
A
HOH
289
5
HOH
HOH
765
A
HOH
290
5
HOH
HOH
766
A
HOH
291
5
HOH
HOH
767
A
HOH
292
5
HOH
HOH
768
A
HOH
293
5
HOH
HOH
769
A
HOH
294
5
HOH
HOH
770
A
HOH
295
5
HOH
HOH
771
A
HOH
296
5
HOH
HOH
772
A
HOH
297
5
HOH
HOH
773
A
HOH
298
5
HOH
HOH
774
A
HOH
299
5
HOH
HOH
775
A
HOH
300
5
HOH
HOH
776
A
HOH
301
5
HOH
HOH
777
A
HOH
302
5
HOH
HOH
778
A
HOH
303
5
HOH
HOH
779
A
HOH
304
5
HOH
HOH
780
A
HOH
306
5
HOH
HOH
781
A
HOH
307
5
HOH
HOH
782
A
HOH
308
5
HOH
HOH
783
A
HOH
309
5
HOH
HOH
784
A
HOH
310
5
HOH
HOH
785
A
HOH
312
5
HOH
HOH
786
A
HOH
314
5
HOH
HOH
787
A
HOH
315
5
HOH
HOH
788
A
HOH
316
5
HOH
HOH
789
A
HOH
317
5
HOH
HOH
790
A
HOH
318
5
HOH
HOH
791
A
HOH
319
5
HOH
HOH
792
A
HOH
320
5
HOH
HOH
793
A
HOH
323
5
HOH
HOH
794
A
HOH
324
5
HOH
HOH
795
A
HOH
325
5
HOH
HOH
796
A
HOH
326
5
HOH
HOH
797
A
HOH
328
5
HOH
HOH
798
A
HOH
329
5
HOH
HOH
799
A
HOH
330
5
HOH
HOH
800
A
HOH
332
5
HOH
HOH
801
A
HOH
333
5
HOH
HOH
802
A
HOH
334
5
HOH
HOH
803
A
HOH
335
5
HOH
HOH
804
A
HOH
336
5
HOH
HOH
805
A
HOH
337
5
HOH
HOH
806
A
HOH
338
5
HOH
HOH
807
A
HOH
339
5
HOH
HOH
808
A
HOH
340
5
HOH
HOH
809
A
HOH
341
5
HOH
HOH
810
A
HOH
33
5
HOH
HOH
33
B
HOH
45
5
HOH
HOH
45
B
HOH
179
5
HOH
HOH
179
B
HOH
226
5
HOH
HOH
226
B
HOH
264
5
HOH
HOH
264
B
HOH
311
5
HOH
HOH
311
B
HOH
321
5
HOH
HOH
321
B
2.500
2.500
37.730
37.730
Phaser MODE: MR_AUTO
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
n
11
10
A
n
12
11
A
n
13
12
A
n
14
13
A
n
15
14
A
n
16
15
A
n
17
16
A
n
18
17
A
n
19
18
A
n
20
19
A
n
21
20
A
n
22
21
A
n
23
22
A
n
24
23
A
n
25
24
A
n
26
25
A
n
27
26
A
n
28
27
A
n
29
28
A
n
30
29
A
n
31
30
A
n
32
31
A
n
33
32
A
PRO
33
n
34
PRO
33
A
LEU
34
n
35
LEU
34
A
GLU
35
n
36
GLU
35
A
SER
36
n
37
SER
36
A
GLN
37
n
38
GLN
37
A
TYR
38
n
39
TYR
38
A
GLN
39
n
40
GLN
39
A
VAL
40
n
41
VAL
40
A
GLY
41
n
42
GLY
41
A
PRO
42
n
43
PRO
42
A
LEU
43
n
44
LEU
43
A
LEU
44
n
45
LEU
44
A
GLY
45
n
46
GLY
45
A
SER
46
n
47
SER
46
A
GLY
47
n
48
GLY
47
A
GLY
48
n
49
GLY
48
A
PHE
49
n
50
PHE
49
A
GLY
50
n
51
GLY
50
A
SER
51
n
52
SER
51
A
VAL
52
n
53
VAL
52
A
TYR
53
n
54
TYR
53
A
SER
54
n
55
SER
54
A
GLY
55
n
56
GLY
55
A
ILE
56
n
57
ILE
56
A
ARG
57
n
58
ARG
57
A
VAL
58
n
59
VAL
58
A
SER
59
n
60
SER
59
A
ASP
60
n
61
ASP
60
A
ASN
61
n
62
ASN
61
A
LEU
62
n
63
LEU
62
A
PRO
63
n
64
PRO
63
A
VAL
64
n
65
VAL
64
A
ALA
65
n
66
ALA
65
A
ILE
66
n
67
ILE
66
A
LYS
67
n
68
LYS
67
A
HIS
68
n
69
HIS
68
A
VAL
69
n
70
VAL
69
A
GLU
70
n
71
GLU
70
A
LYS
71
n
72
LYS
71
A
ASP
72
n
73
ASP
72
A
ARG
73
n
74
ARG
73
A
ILE
74
n
75
ILE
74
A
SER
75
n
76
SER
75
A
ASP
76
n
77
ASP
76
A
TRP
77
n
78
TRP
77
A
GLY
78
n
79
GLY
78
A
GLU
79
n
80
GLU
79
A
LEU
80
n
81
LEU
80
A
PRO
81
n
82
PRO
81
A
n
83
82
A
n
84
83
A
THR
84
n
85
THR
84
A
ARG
85
n
86
ARG
85
A
VAL
86
n
87
VAL
86
A
PRO
87
n
88
PRO
87
A
MET
88
n
89
MET
88
A
GLU
89
n
90
GLU
89
A
VAL
90
n
91
VAL
90
A
VAL
91
n
92
VAL
91
A
LEU
92
n
93
LEU
92
A
LEU
93
n
94
LEU
93
A
LYS
94
n
95
LYS
94
A
LYS
95
n
96
LYS
95
A
VAL
96
n
97
VAL
96
A
SER
97
n
98
SER
97
A
SER
98
n
99
SER
98
A
GLY
99
n
100
GLY
99
A
PHE
100
n
101
PHE
100
A
SER
101
n
102
SER
101
A
GLY
102
n
103
GLY
102
A
VAL
103
n
104
VAL
103
A
ILE
104
n
105
ILE
104
A
ARG
105
n
106
ARG
105
A
LEU
106
n
107
LEU
106
A
LEU
107
n
108
LEU
107
A
ASP
108
n
109
ASP
108
A
TRP
109
n
110
TRP
109
A
PHE
110
n
111
PHE
110
A
GLU
111
n
112
GLU
111
A
ARG
112
n
113
ARG
112
A
PRO
113
n
114
PRO
113
A
ASP
114
n
115
ASP
114
A
SER
115
n
116
SER
115
A
PHE
116
n
117
PHE
116
A
VAL
117
n
118
VAL
117
A
LEU
118
n
119
LEU
118
A
ILE
119
n
120
ILE
119
A
LEU
120
n
121
LEU
120
A
GLU
121
n
122
GLU
121
A
ARG
122
n
123
ARG
122
A
PRO
123
n
124
PRO
123
A
GLU
124
n
125
GLU
124
A
PRO
125
n
126
PRO
125
A
VAL
126
n
127
VAL
126
A
GLN
127
n
128
GLN
127
A
ASP
128
n
129
ASP
128
A
LEU
129
n
130
LEU
129
A
PHE
130
n
131
PHE
130
A
ASP
131
n
132
ASP
131
A
PHE
132
n
133
PHE
132
A
ILE
133
n
134
ILE
133
A
THR
134
n
135
THR
134
A
GLU
135
n
136
GLU
135
A
ARG
136
n
137
ARG
136
A
GLY
137
n
138
GLY
137
A
ALA
138
n
139
ALA
138
A
LEU
139
n
140
LEU
139
A
GLN
140
n
141
GLN
140
A
GLU
141
n
142
GLU
141
A
GLU
142
n
143
GLU
142
A
LEU
143
n
144
LEU
143
A
ALA
144
n
145
ALA
144
A
ARG
145
n
146
ARG
145
A
SER
146
n
147
SER
146
A
PHE
147
n
148
PHE
147
A
PHE
148
n
149
PHE
148
A
TRP
149
n
150
TRP
149
A
GLN
150
n
151
GLN
150
A
VAL
151
n
152
VAL
151
A
LEU
152
n
153
LEU
152
A
GLU
153
n
154
GLU
153
A
ALA
154
n
155
ALA
154
A
VAL
155
n
156
VAL
155
A
ARG
156
n
157
ARG
156
A
HIS
157
n
158
HIS
157
A
CYS
158
n
159
CYS
158
A
HIS
159
n
160
HIS
159
A
ASN
160
n
161
ASN
160
A
CYS
161
n
162
CYS
161
A
GLY
162
n
163
GLY
162
A
VAL
163
n
164
VAL
163
A
LEU
164
n
165
LEU
164
A
HIS
165
n
166
HIS
165
A
ARG
166
n
167
ARG
166
A
ASP
167
n
168
ASP
167
A
ILE
168
n
169
ILE
168
A
LYS
169
n
170
LYS
169
A
ASP
170
n
171
ASP
170
A
GLU
171
n
172
GLU
171
A
ASN
172
n
173
ASN
172
A
ILE
173
n
174
ILE
173
A
LEU
174
n
175
LEU
174
A
ILE
175
n
176
ILE
175
A
ASP
176
n
177
ASP
176
A
LEU
177
n
178
LEU
177
A
ASN
178
n
179
ASN
178
A
ARG
179
n
180
ARG
179
A
GLY
180
n
181
GLY
180
A
GLU
181
n
182
GLU
181
A
LEU
182
n
183
LEU
182
A
LYS
183
n
184
LYS
183
A
LEU
184
n
185
LEU
184
A
ILE
185
n
186
ILE
185
A
ASP
186
n
187
ASP
186
A
PHE
187
n
188
PHE
187
A
GLY
188
n
189
GLY
188
A
SER
189
n
190
SER
189
A
GLY
190
n
191
GLY
190
A
ALA
191
n
192
ALA
191
A
LEU
192
n
193
LEU
192
A
LEU
193
n
194
LEU
193
A
LYS
194
n
195
LYS
194
A
ASP
195
n
196
ASP
195
A
THR
196
n
197
THR
196
A
VAL
197
n
198
VAL
197
A
TYR
198
n
199
TYR
198
A
THR
199
n
200
THR
199
A
ASP
200
n
201
ASP
200
A
PHE
201
n
202
PHE
201
A
ASP
202
n
203
ASP
202
A
GLY
203
n
204
GLY
203
A
THR
204
n
205
THR
204
A
ARG
205
n
206
ARG
205
A
VAL
206
n
207
VAL
206
A
TYR
207
n
208
TYR
207
A
SER
208
n
209
SER
208
A
PRO
209
n
210
PRO
209
A
PRO
210
n
211
PRO
210
A
GLU
211
n
212
GLU
211
A
TRP
212
n
213
TRP
212
A
ILE
213
n
214
ILE
213
A
ARG
214
n
215
ARG
214
A
TYR
215
n
216
TYR
215
A
HIS
216
n
217
HIS
216
A
ARG
217
n
218
ARG
217
A
TYR
218
n
219
TYR
218
A
HIS
219
n
220
HIS
219
A
GLY
220
n
221
GLY
220
A
ARG
221
n
222
ARG
221
A
SER
222
n
223
SER
222
A
ALA
223
n
224
ALA
223
A
ALA
224
n
225
ALA
224
A
VAL
225
n
226
VAL
225
A
TRP
226
n
227
TRP
226
A
SER
227
n
228
SER
227
A
LEU
228
n
229
LEU
228
A
GLY
229
n
230
GLY
229
A
ILE
230
n
231
ILE
230
A
LEU
231
n
232
LEU
231
A
LEU
232
n
233
LEU
232
A
TYR
233
n
234
TYR
233
A
ASP
234
n
235
ASP
234
A
MET
235
n
236
MET
235
A
VAL
236
n
237
VAL
236
A
CYS
237
n
238
CYS
237
A
GLY
238
n
239
GLY
238
A
ASP
239
n
240
ASP
239
A
ILE
240
n
241
ILE
240
A
PRO
241
n
242
PRO
241
A
PHE
242
n
243
PHE
242
A
GLU
243
n
244
GLU
243
A
HIS
244
n
245
HIS
244
A
ASP
245
n
246
ASP
245
A
GLU
246
n
247
GLU
246
A
GLU
247
n
248
GLU
247
A
ILE
248
n
249
ILE
248
A
ILE
249
n
250
ILE
249
A
GLY
250
n
251
GLY
250
A
GLY
251
n
252
GLY
251
A
GLN
252
n
253
GLN
252
A
VAL
253
n
254
VAL
253
A
PHE
254
n
255
PHE
254
A
PHE
255
n
256
PHE
255
A
ARG
256
n
257
ARG
256
A
GLN
257
n
258
GLN
257
A
ARG
258
n
259
ARG
258
A
VAL
259
n
260
VAL
259
A
SER
260
n
261
SER
260
A
SER
261
n
262
SER
261
A
GLU
262
n
263
GLU
262
A
CYS
263
n
264
CYS
263
A
GLN
264
n
265
GLN
264
A
HIS
265
n
266
HIS
265
A
LEU
266
n
267
LEU
266
A
ILE
267
n
268
ILE
267
A
ARG
268
n
269
ARG
268
A
TRP
269
n
270
TRP
269
A
CYS
270
n
271
CYS
270
A
LEU
271
n
272
LEU
271
A
ALA
272
n
273
ALA
272
A
LEU
273
n
274
LEU
273
A
ARG
274
n
275
ARG
274
A
PRO
275
n
276
PRO
275
A
SER
276
n
277
SER
276
A
ASP
277
n
278
ASP
277
A
ARG
278
n
279
ARG
278
A
PRO
279
n
280
PRO
279
A
THR
280
n
281
THR
280
A
PHE
281
n
282
PHE
281
A
GLU
282
n
283
GLU
282
A
GLU
283
n
284
GLU
283
A
ILE
284
n
285
ILE
284
A
GLN
285
n
286
GLN
285
A
ASN
286
n
287
ASN
286
A
HIS
287
n
288
HIS
287
A
PRO
288
n
289
PRO
288
A
TRP
289
n
290
TRP
289
A
MET
290
n
291
MET
290
A
GLN
291
n
292
GLN
291
A
ASP
292
n
293
ASP
292
A
VAL
293
n
294
VAL
293
A
LEU
294
n
295
LEU
294
A
LEU
295
n
296
LEU
295
A
PRO
296
n
297
PRO
296
A
GLN
297
n
298
GLN
297
A
GLU
298
n
299
GLU
298
A
THR
299
n
300
THR
299
A
ALA
300
n
301
ALA
300
A
GLU
301
n
302
GLU
301
A
ILE
302
n
303
ILE
302
A
HIS
303
n
304
HIS
303
A
LEU
304
n
305
LEU
304
A
HIS
305
n
306
HIS
305
A
SER
306
n
307
SER
306
A
n
308
307
A
n
309
308
A
n
310
309
A
n
311
310
A
n
312
311
A
n
313
312
A
n
314
313
A
ALA
1
n
1
ALA
1
B
ARG
2
n
2
ARG
2
B
LYS
3
n
3
LYS
3
B
ARG
4
n
4
ARG
4
B
ARG
5
n
5
ARG
5
B
ARG
6
n
6
ARG
6
B
HIS
7
n
7
HIS
7
B
PRO
8
n
8
PRO
8
B
SER
9
n
9
SER
9
B
GLY
10
n
10
GLY
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
7.1991
1.3385
-1.7602
8.0440
-0.6169
5.5420
-0.0729
0.6532
0.3287
-0.6558
0.0999
0.3187
-0.5789
-0.4082
-0.0270
-0.0021
0.1375
0.0365
0.0891
-0.0066
-0.0581
refined
26.5336
55.0336
7.2290
X-RAY DIFFRACTION
1.4127
-0.4677
0.0053
2.0274
-0.4453
1.9425
0.0399
0.0273
0.0656
-0.0097
-0.0105
0.0781
-0.1242
-0.1029
-0.0295
-0.1744
0.0088
0.0232
-0.1478
-0.0159
-0.1852
refined
44.1172
41.9918
13.7399
X-RAY DIFFRACTION
A
33
A
34
A
86
A
87
X-RAY DIFFRACTION
1
A
87
A
88
A
305
A
306
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
1140
2.3
12910
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
41
A
N
GLY
42
A
O
SER
54
A
O
SER
55
A
N
SER
51
A
N
SER
52
A
O
HIS
68
A
O
HIS
69
A
N
LYS
67
A
N
LYS
68
A
O
LEU
118
A
O
LEU
119
A
O
ILE
119
A
O
ILE
120
A
N
ASP
108
A
N
ASP
109
A
N
GLY
78
A
N
GLY
79
A
O
VAL
86
A
O
VAL
87
A
N
GLN
127
A
N
GLN
128
A
O
ILE
175
A
O
ILE
176
A
N
ASP
176
A
N
ASP
177
A
O
GLU
181
A
O
GLU
182
A
N
LEU
164
A
N
LEU
165
A
O
ALA
191
A
O
ALA
192
1
A
CD
GLU
35
A
CD
GLU
36
1
Y
1
A
OE1
GLU
35
A
OE1
GLU
36
1
Y
1
A
OE2
GLU
35
A
OE2
GLU
36
1
Y
1
A
OG
SER
36
A
OG
SER
37
1
Y
1
A
CD
GLN
39
A
CD
GLN
40
1
Y
1
A
OE1
GLN
39
A
OE1
GLN
40
1
Y
1
A
NE2
GLN
39
A
NE2
GLN
40
1
Y
1
A
OD1
ASP
72
A
OD1
ASP
73
1
Y
1
A
OD2
ASP
72
A
OD2
ASP
73
1
Y
1
A
CD
ARG
73
A
CD
ARG
74
1
Y
1
A
NE
ARG
73
A
NE
ARG
74
1
Y
1
A
CZ
ARG
73
A
CZ
ARG
74
1
Y
1
A
NH1
ARG
73
A
NH1
ARG
74
1
Y
1
A
NH2
ARG
73
A
NH2
ARG
74
1
Y
1
A
CG
GLU
79
A
CG
GLU
80
1
Y
1
A
CD
GLU
79
A
CD
GLU
80
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
80
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
80
1
Y
1
A
OG1
THR
84
A
OG1
THR
85
1
Y
1
A
CG2
THR
84
A
CG2
THR
85
1
Y
1
A
CZ
ARG
105
A
CZ
ARG
106
1
Y
1
A
NH1
ARG
105
A
NH1
ARG
106
1
Y
1
A
NH2
ARG
105
A
NH2
ARG
106
1
Y
1
A
CG
ARG
274
A
CG
ARG
275
1
Y
1
A
CD
ARG
274
A
CD
ARG
275
1
Y
1
A
NE
ARG
274
A
NE
ARG
275
1
Y
1
A
CZ
ARG
274
A
CZ
ARG
275
1
Y
1
A
NH1
ARG
274
A
NH1
ARG
275
1
Y
1
A
NH2
ARG
274
A
NH2
ARG
275
1
Y
1
A
OG
SER
306
A
OG
SER
307
1
Y
1
B
CD
LYS
3
B
CD
LYS
3
1
Y
1
B
CE
LYS
3
B
CE
LYS
3
1
Y
1
B
NZ
LYS
3
B
NZ
LYS
3
1
Y
1
A
SER
0
A
SER
1
1
Y
1
A
MET
1
A
MET
2
1
Y
1
A
LEU
2
A
LEU
3
1
Y
1
A
LEU
3
A
LEU
4
1
Y
1
A
SER
4
A
SER
5
1
Y
1
A
LYS
5
A
LYS
6
1
Y
1
A
ILE
6
A
ILE
7
1
Y
1
A
ASN
7
A
ASN
8
1
Y
1
A
SER
8
A
SER
9
1
Y
1
A
LEU
9
A
LEU
10
1
Y
1
A
ALA
10
A
ALA
11
1
Y
1
A
HIS
11
A
HIS
12
1
Y
1
A
LEU
12
A
LEU
13
1
Y
1
A
ARG
13
A
ARG
14
1
Y
1
A
ALA
14
A
ALA
15
1
Y
1
A
ALA
15
A
ALA
16
1
Y
1
A
PRO
16
A
PRO
17
1
Y
1
A
CYS
17
A
CYS
18
1
Y
1
A
ASN
18
A
ASN
19
1
Y
1
A
ASP
19
A
ASP
20
1
Y
1
A
LEU
20
A
LEU
21
1
Y
1
A
HIS
21
A
HIS
22
1
Y
1
A
ALA
22
A
ALA
23
1
Y
1
A
THR
23
A
THR
24
1
Y
1
A
LYS
24
A
LYS
25
1
Y
1
A
LEU
25
A
LEU
26
1
Y
1
A
ALA
26
A
ALA
27
1
Y
1
A
PRO
27
A
PRO
28
1
Y
1
A
GLY
28
A
GLY
29
1
Y
1
A
LYS
29
A
LYS
30
1
Y
1
A
GLU
30
A
GLU
31
1
Y
1
A
LYS
31
A
LYS
32
1
Y
1
A
GLU
32
A
GLU
33
1
Y
1
A
ASN
82
A
ASN
83
1
Y
1
A
GLY
83
A
GLY
84
1
Y
1
A
LEU
307
A
LEU
308
1
Y
1
A
SER
308
A
SER
309
1
Y
1
A
PRO
309
A
PRO
310
1
Y
1
A
GLY
310
A
GLY
311
1
Y
1
A
PRO
311
A
PRO
312
1
Y
1
A
SER
312
A
SER
313
1
Y
1
A
LYS
313
A
LYS
314
1
Y
1
B
PRO
11
B
PRO
11
1
Y
1
B
PRO
12
B
PRO
12
1
Y
1
B
THR
13
B
THR
13
1
Y
1
B
ALA
14
B
ALA
14
1
Y
1
3.18
0.50
120.30
123.48
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
145
145
145
N
1
-3.42
0.50
120.30
116.88
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
145
145
145
N
1
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
258
258
258
A
A
A
N
1
4.31
0.50
120.30
124.61
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
258
258
258
A
A
A
N
1
A
A
O
O
HOH
HOH
718
754
1.99
1_555
5_565
1
A
ASP
60
-148.86
15.94
1
A
SER
98
-179.03
-178.89
1
A
ASP
167
-151.16
46.30
1
A
ASP
186
66.30
77.59
19.425
0.120
0.060
0.000
0.120
0.000
-0.180
0.962
0.938
0.206
0.164
0.166
0.166
2.100
36.71
1330
26168
26168
5.100
99.950
7.081
0.102
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.145
0.141
0.800
0.800
1.200
PDB entry 2C3I
MAXIMUM LIKELIHOOD
MASK
2.100
36.71
217
2506
26
0
2263
0.016
0.021
2369
0.002
0.020
1639
1.477
1.961
3216
1.653
3.001
3942
6.494
5.000
279
32.886
22.881
118
14.065
15.000
389
17.488
15.000
22
0.089
0.200
340
0.008
0.021
2617
0.001
0.020
510
2.196
3.000
1402
0.638
3.000
570
3.400
5.000
2266
5.510
8.000
967
7.364
11.000
950
0.298
0.229
2.154
97
1805
1902
20
99.950
2.100
50.000
3CXW
26203
26203
0.0
0.126
0.126
1.567
1
6.300
3.800
100.000
0.724
2.10
2.18
2592
1.035
1
3.80
100.00
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.005
data collection
CrystalClear
data reduction
HKL-2000
Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a beta carboline ligand I
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
AUTHORS STATE THAT BY GEL FILTRATION THE PROTEIN APPEARS TO BE MONOMERIC. THE BIOLOGICAL ASSEMBLY SHOWN IN REMARK 350 IS A MONOMERIC COMPLEX BETWEEN THE PROTEIN AND THE CONSENSUS PEPTIDE.
A
PRO
33
A
PRO
34
HELX_P
A
GLN
37
A
GLN
38
1
1
5
A
ASP
72
A
ASP
73
HELX_P
A
ILE
74
A
ILE
75
5
2
3
A
MET
88
A
MET
89
HELX_P
A
SER
97
A
SER
98
1
3
10
A
LEU
129
A
LEU
130
HELX_P
A
GLY
137
A
GLY
138
1
4
9
A
GLN
140
A
GLN
141
HELX_P
A
CYS
161
A
CYS
162
1
5
22
A
LYS
169
A
LYS
170
HELX_P
A
GLU
171
A
GLU
172
5
6
3
A
THR
204
A
THR
205
HELX_P
A
SER
208
A
SER
209
5
7
5
A
PRO
209
A
PRO
210
HELX_P
A
HIS
216
A
HIS
217
1
8
8
A
HIS
219
A
HIS
220
HELX_P
A
GLY
238
A
GLY
239
1
9
20
A
HIS
244
A
HIS
245
HELX_P
A
GLY
251
A
GLY
252
1
10
8
A
SER
260
A
SER
261
HELX_P
A
LEU
271
A
LEU
272
1
11
12
A
ARG
274
A
ARG
275
HELX_P
A
ARG
278
A
ARG
279
5
12
5
A
THR
280
A
THR
281
HELX_P
A
HIS
287
A
HIS
288
1
13
8
A
PRO
288
A
PRO
289
HELX_P
A
GLN
291
A
GLN
292
5
14
4
A
LEU
295
A
LEU
296
HELX_P
A
LEU
304
A
LEU
305
1
15
10
TRANSFERASE
oncogene, kinase, serine-threonine, PIM1, Structural Genomics Consortium, SGC, Alternative initiation, ATP-binding, Manganese, Membrane, Metal-binding, Nucleotide-binding, Nucleus, Phosphoprotein, Proto-oncogene, Serine/threonine-protein kinase, Transferase, Host-virus interaction, Viral immunoevasion, Virion, Virulence
A
GLU
124
A
GLU
125
1
A
PRO
125
A
PRO
126
-9.05
PIM1_HUMAN
UNP
1
1
P11309
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
3CXW
PDB
2
1
3CXW
ARKRRRHPSGPPTA
1
313
3CXW
1
313
P11309
A
1
2
314
1
14
3CXW
1
14
3CXW
B
2
1
14
1
expression tag
SER
0
3CXW
A
P11309
UNP
1
1
ARG
engineered mutation
GLY
250
3CXW
A
P11309
UNP
250
251
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
39
A
GLY
47
A
GLY
48
A
GLY
50
A
GLY
51
A
ARG
57
A
ARG
58
A
PRO
63
A
PRO
64
A
GLU
70
A
GLU
71
A
SER
115
A
SER
116
A
GLU
121
A
GLU
122
A
LEU
106
A
LEU
107
A
GLU
111
A
GLU
112
A
TRP
77
A
TRP
78
A
GLU
79
A
GLU
80
A
ARG
85
A
ARG
86
A
PRO
87
A
PRO
88
A
VAL
126
A
VAL
127
A
ASP
128
A
ASP
129
A
ILE
173
A
ILE
174
A
ASP
176
A
ASP
177
A
GLU
181
A
GLU
182
A
LEU
184
A
LEU
185
A
VAL
163
A
VAL
164
A
LEU
164
A
LEU
165
A
ALA
191
A
ALA
192
A
LEU
192
A
LEU
193
BINDING SITE FOR RESIDUE CL A 401
A
CL
401
Software
2
BINDING SITE FOR RESIDUE 7CP A 501
A
7CP
501
Software
11
A
LYS
67
A
LYS
68
2
1_555
A
ASP
186
A
ASP
187
2
1_555
A
LEU
44
A
LEU
45
11
1_555
A
PHE
49
A
PHE
50
11
1_555
A
ALA
65
A
ALA
66
11
1_555
A
LYS
67
A
LYS
68
11
1_555
A
ARG
122
A
ARG
123
11
1_555
A
GLU
171
A
GLU
172
11
1_555
A
ASN
172
A
ASN
173
11
1_555
A
LEU
174
A
LEU
175
11
1_555
A
ILE
185
A
ILE
186
11
1_555
A
ASP
186
A
ASP
187
11
1_555
B
SER
9
B
SER
9
11
1_555
170
P 65