0.013150
0.000000
0.000000
0.000000
0.009007
0.000000
0.000000
0.000000
0.017943
0.00000
0.00000
0.00000
Thore, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
76.048
111.022
55.733
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C12 H19 N4 O7 P2 S 1
425.314
THIAMINE DIPHOSPHATE
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
MG
Y
115
N
N
Y
116
N
C
N
117
N
C
Y
118
N
N
Y
119
N
C
N
120
N
N
Y
121
N
C
Y
122
N
C
N
123
N
C
Y
124
N
N
Y
125
N
C
Y
126
N
S
Y
127
N
C
Y
128
N
C
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
S
P
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
Y
118
N
doub
Y
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
Y
125
N
doub
N
126
N
sing
Y
127
N
sing
N
128
N
sing
N
129
N
sing
Y
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
doub
Y
137
N
sing
Y
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
130
8116
8117
10.1021/ja801708e
18533652
Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
2008
10.2210/pdb3d2g/pdb
pdb_00003d2g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-05-29
MARMOSAIC 225 mm CCD
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X06SA
SLS
1.0
SYNCHROTRON
SLS BEAMLINE X06SA
24958.838
TPP-specific riboswitch
2
man
polymer
24.305
MAGNESIUM ION
10
syn
non-polymer
425.314
THIAMINE DIPHOSPHATE
2
syn
non-polymer
18.015
water
163
nat
water
no
no
GGGACCAGGGGUGCUUGUUCACAGGCUGAGAAAGUCCCUUUGAACCUGAACAGGGUAAUGCCUGCGCAGGGAGUGUC
GGGACCAGGGGUGCUUGUUCACAGGCUGAGAAAGUCCCUUUGAACCUGAACAGGGUAAUGCCUGCGCAGGGAGUGUC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
In vitro transcription
Arabidopsis thaliana
cell-free synthesis
1
2.36
47.81
VAPOR DIFFUSION, HANGING DROP
6.8
12-18% 1,6-hexanediol, 0.5mM spermine, 10mM magnesium sulfate, 40mM sodium cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
1,6-hexanediol
1
1,6-hexanediol
2
spermine
1
magnesium sulfate
1
magnesium sulfate
2
sodium cacodylate
1
sodium cacodylate
2
-2.596
1
19
A
3
A
77
-4.501
A_G3:C77_A
1
-1.778
-0.397
0.084
-0.111
10.529
1
20
A
4
A
76
7.480
A_A4:U76_A
2
-12.497
0.159
0.299
-0.066
7.021
1
19
A
5
A
75
3.242
A_C5:G75_A
3
-15.963
-0.415
-0.193
-0.073
2.953
1
19
A
6
A
73
-4.534
A_C6:G73_A
4
-4.624
0.376
-0.344
-0.348
-1.986
1
20
A
7
A
39
3.839
A_A7:U39_A
5
-7.500
-0.213
-0.032
0.066
-9.000
1
19
A
8
A
38
3.582
A_G8:C38_A
6
-12.271
-0.317
-0.253
0.086
-14.890
1
19
A
9
A
37
-2.330
A_G9:C37_A
7
-12.748
-0.542
-0.141
-0.199
-5.048
1
19
A
10
A
36
-2.714
A_G10:C36_A
8
-10.177
0.101
0.332
-0.033
-9.020
A
11
A
34
-127.678
A_G11:G34_A
9
-8.410
2.183
-0.029
1.680
24.007
3
23
A
12
A
33
-58.199
A_U12:A33_A
10
-12.096
-0.024
-1.041
3.441
17.052
3
23
A
21
A
19
75.066
A_A21:U19_A
11
-20.945
1.035
-0.858
-3.852
-7.441
1
19
A
22
A
17
1.618
A_C22:G17_A
12
2.444
0.515
0.314
-0.371
3.134
1
20
A
23
A
16
-9.009
A_A23:U16_A
13
-9.630
0.216
-0.183
-0.374
-1.238
28
A
24
A
15
-1.366
A_G24:U15_A
14
-15.536
-2.099
-0.323
-0.537
-10.515
1
19
A
25
A
14
-2.271
A_G25:C14_A
15
-15.057
-0.200
-0.027
-0.012
-14.881
1
19
A
26
A
13
-2.058
A_C26:G13_A
16
1.969
0.048
0.385
-0.198
6.799
4
24
A
27
A
31
-99.790
A_U27:A31_A
17
6.217
4.150
0.735
-1.786
-26.318
10
11
A
42
A
72
0.955
A_G42:A72_A
18
18.850
6.835
-0.856
-4.606
16.164
10
11
A
44
A
71
-11.347
A_A44:G71_A
19
-15.326
-6.968
0.111
-4.409
15.988
1
19
A
45
A
70
2.595
A_C45:G70_A
20
-20.497
0.486
-0.146
-0.169
9.560
1
19
A
46
A
69
1.930
A_C46:G69_A
21
-18.998
0.197
-0.206
-0.146
-8.969
1
20
A
47
A
68
-0.960
A_U47:A68_A
22
-14.834
-0.141
0.240
-0.042
-9.720
6
A
48
A
66
-95.297
A_G48:G66_A
23
7.207
1.131
0.188
3.675
1.356
A
49
A
65
105.184
A_A49:C65_A
24
-12.907
-2.171
0.153
2.839
9.748
1
19
A
51
A
64
-6.163
A_C51:G64_A
25
-14.379
-0.093
0.238
-0.231
7.028
1
20
A
52
A
63
3.947
A_A52:U63_A
26
-16.844
-0.085
0.281
-0.354
0.593
1
19
A
53
A
62
-3.652
A_G53:C62_A
27
-8.598
-0.129
0.317
-0.564
3.097
1
19
A
54
A
61
-4.451
A_G54:C61_A
28
-7.924
-0.002
0.258
-0.288
-2.280
B
3
B
77
-8.949
B_G3:C77_B
29
7.581
1.269
0.239
0.362
-2.664
1
20
B
4
B
76
9.188
B_A4:U76_B
30
-7.781
-0.550
0.452
-0.033
4.783
1
B
5
B
75
11.989
B_C5:G75_B
31
-13.053
0.175
-0.192
0.205
-0.065
1
19
B
6
B
73
-2.226
B_C6:G73_B
32
-13.871
-0.503
-0.337
-0.454
-0.735
1
20
B
7
B
39
-3.387
B_A7:U39_B
33
-9.523
0.599
0.025
-0.156
-6.224
1
19
B
8
B
38
7.448
B_G8:C38_B
34
-12.609
-0.599
0.005
-0.177
-12.766
1
19
B
9
B
37
0.589
B_G9:C37_B
35
-13.159
-0.237
0.384
-0.269
-4.777
1
19
B
10
B
36
-1.424
B_G10:C36_B
36
-6.761
-0.044
0.882
-0.290
-12.702
B
11
B
34
-123.380
B_G11:G34_B
37
-11.563
2.369
0.096
2.061
28.732
3
23
B
12
B
33
-60.243
B_U12:A33_B
38
-14.413
-0.251
-0.881
3.709
8.578
3
23
B
21
B
19
71.376
B_A21:U19_B
39
-22.744
0.874
-1.247
-3.773
-3.609
1
19
B
22
B
17
-2.226
B_C22:G17_B
40
-0.473
-0.759
-0.374
-0.217
-2.080
1
20
B
23
B
16
0.585
B_A23:U16_B
41
-9.972
-0.296
-0.226
0.001
-1.576
1
28
B
24
B
15
1.575
B_G24:U15_B
42
-15.900
-2.198
-0.186
-0.616
-16.423
1
19
B
25
B
14
-1.087
B_G25:C14_B
43
-12.522
-0.368
-0.200
-0.133
-17.616
1
19
B
26
B
13
-3.592
B_C26:G13_B
44
6.766
0.079
0.451
-0.013
8.633
4
24
B
27
B
31
-93.564
B_U27:A31_B
45
13.397
4.292
0.918
-2.274
-27.480
9
11
B
42
B
72
-1.183
B_G42:A72_B
46
16.886
6.761
-0.798
-4.310
22.106
10
11
B
44
B
71
-8.594
B_A44:G71_B
47
-19.458
-6.599
0.249
-4.074
14.265
1
19
B
45
B
70
4.466
B_C45:G70_B
48
-21.206
0.622
-0.186
-0.204
4.947
1
19
B
46
B
69
4.032
B_C46:G69_B
49
-15.086
0.364
0.101
-0.342
-12.715
1
20
B
47
B
68
3.166
B_U47:A68_B
50
-15.030
-0.080
0.107
-0.056
-11.592
6
B
48
B
66
-93.842
B_G48:G66_B
51
8.454
1.217
0.085
3.244
8.602
B
49
B
65
106.414
B_A49:C65_B
52
-14.435
-2.301
-0.311
2.900
7.940
1
19
B
51
B
64
-2.269
B_C51:G64_B
53
-12.659
0.259
0.288
-0.119
1.910
1
20
B
52
B
63
2.538
B_A52:U63_B
54
-14.689
-0.035
0.323
-0.061
-2.333
1
19
B
53
B
62
-0.868
B_G53:C62_B
55
-12.076
0.457
-0.256
-0.243
0.762
1
19
B
54
B
61
-3.077
B_G54:C61_B
56
-4.907
0.469
0.242
-0.130
2.853
30.536
A
A
3
4
5.323
A
A
77
76
2.980
2.799
0.454
-1.133
AA_G3A4:U76C77_AA
1
-0.857
1.630
30.399
-2.648
-1.014
2.981
32.704
A
A
4
5
11.713
A
A
76
75
3.306
6.536
0.616
-1.602
AA_A4C5:G75U76_AA
2
4.172
-7.476
31.796
-3.948
-0.391
3.449
42.818
A
A
5
6
1.514
A
A
75
73
3.464
1.105
0.624
-1.291
AA_C5C6:G73G75_AA
3
1.450
-1.986
42.781
-1.885
-0.702
3.104
37.341
A
A
6
7
8.768
A
A
73
39
3.314
5.593
1.525
-1.548
AA_C6A7:U39G73_AA
4
1.274
-1.996
36.913
-3.146
-2.216
2.849
29.527
A
A
7
8
16.109
A
A
39
38
3.551
8.095
0.667
-2.311
AA_A7G8:C38U39_AA
5
3.074
-6.118
28.256
-6.257
-0.655
3.027
30.458
A
A
8
9
10.310
A
A
38
37
3.415
5.387
-0.453
-2.054
AA_G8G9:C37C38_AA
6
-1.509
2.888
29.952
-4.978
0.562
3.042
34.875
A
A
9
10
1.269
A
A
37
36
3.066
0.760
0.309
-1.731
AA_G9G10:C36C37_AA
7
2.073
-3.462
34.807
-2.996
-0.222
3.133
87.387
A
A
10
11
-1.118
A
A
36
34
3.205
-1.543
-1.160
-0.586
AA_G10G11:G34C36_AA
8
6.930
-5.019
87.156
-0.392
0.985
2.265
-18.963
A
A
11
12
-15.121
A
A
34
33
3.085
4.621
0.803
-1.239
AA_G11U12:A33G34_AA
9
10.868
35.564
-14.863
1.558
7.621
3.179
120.890
A
A
21
22
-0.443
A
A
19
17
3.182
-0.771
3.343
0.622
AA_A21C22:G17U19_AA
10
-0.048
0.027
120.888
0.364
-1.922
2.681
27.906
A
A
22
23
6.428
A
A
17
16
3.050
3.064
-0.388
-1.587
AA_C22A23:U16G17_AA
11
6.757
-14.176
26.920
-3.942
2.241
1.398
23.850
A
A
23
24
36.205
A
A
16
15
3.375
13.982
0.812
-2.108
AA_A23G24:U15U16_AA
12
-2.846
7.370
19.160
-8.816
-2.720
3.211
44.062
A
A
24
25
9.718
A
A
15
14
3.481
7.221
-0.507
-1.668
AA_G24G25:C14U15_AA
13
-8.250
11.102
42.742
-2.931
-0.132
2.908
34.829
A
A
25
26
12.199
A
A
14
13
3.411
7.251
-0.221
-2.114
AA_G25C26:G13C14_AA
14
0.716
-1.205
34.081
-4.609
0.476
2.674
70.000
A
A
26
27
3.924
A
A
13
31
2.946
4.495
-2.861
-1.206
AA_C26U27:A31G13_AA
15
5.390
-4.704
69.692
-1.189
2.659
2.861
-18.193
A
A
42
44
-10.244
A
A
72
71
2.945
3.221
-1.482
0.610
AA_G42A44:G71A72_AA
16
0.901
2.864
-17.886
-3.555
-4.231
3.433
66.853
A
A
44
45
5.592
A
A
71
70
3.519
6.154
1.405
-0.738
AA_A44C45:G70G71_AA
17
-0.757
0.688
66.598
-0.927
-1.307
2.425
30.586
A
A
45
46
22.572
A
A
70
69
3.315
11.592
-0.999
-2.008
AA_C45C46:G69G70_AA
18
-3.694
7.193
28.115
-5.910
1.223
3.062
36.043
A
A
46
47
18.825
A
A
69
68
3.723
11.436
-0.566
-1.682
AA_C46U47:A68G69_AA
19
-3.944
6.493
34.016
-4.453
0.317
2.979
92.092
A
A
47
48
4.030
A
A
68
66
2.883
5.791
2.378
-2.295
AA_U47G48:G66A68_AA
20
11.172
-7.774
91.421
-1.694
-1.459
0.738
-177.116
A
A
48
49
84.126
A
A
66
65
0.377
-167.828
2.591
1.740
AA_G48A49:C65G66_AA
21
27.935
14.003
-145.955
-0.788
1.310
0.828
-172.047
A
A
49
51
72.045
A
A
65
64
-1.426
-138.680
-3.321
-1.089
AA_A49C51:G64C65_AA
22
101.627
52.795
-19.413
0.342
-1.814
2.762
34.677
A
A
51
52
12.369
A
A
64
63
3.175
7.320
-0.105
-1.695
AA_C51A52:U63G64_AA
23
-0.311
0.526
33.918
-3.875
0.132
2.973
38.984
A
A
52
53
13.058
A
A
63
62
3.206
8.631
-0.856
-1.084
AA_A52G53:C62U63_AA
24
-4.262
6.448
37.822
-2.627
0.788
2.787
32.009
A
A
53
54
6.866
A
A
62
61
3.029
3.777
0.538
-2.085
AA_G53G54:C61C62_AA
25
1.209
-2.199
31.769
-4.390
-0.780
2.374
24.299
B
B
3
4
17.704
B
B
77
76
3.081
7.313
0.368
-1.622
BB_G3A4:U76C77_BB
26
-3.551
8.596
22.918
-5.834
-1.835
3.017
37.187
B
B
4
5
-0.537
B
B
76
75
3.082
-0.342
-0.529
-1.356
BB_A4C5:G75U76_BB
27
4.238
-6.660
36.952
-2.084
1.357
3.285
30.904
B
B
5
6
4.930
B
B
75
73
3.374
2.623
0.164
-0.982
BB_C5C6:G73G75_BB
28
1.734
-3.259
30.748
-2.362
0.035
3.247
46.354
B
B
6
7
10.085
B
B
73
39
3.367
7.902
1.447
-0.714
BB_C6A7:U39G73_BB
29
1.376
-1.755
45.693
-1.590
-1.719
3.264
24.662
B
B
7
8
8.291
B
B
39
38
3.521
3.527
1.249
-2.075
BB_A7G8:C38U39_BB
30
1.568
-3.686
24.362
-5.984
-2.424
3.163
35.279
B
B
8
9
4.838
B
B
38
37
3.340
2.929
-0.048
-2.064
BB_G8G9:C37C38_BB
31
-0.740
1.223
35.154
-3.837
-0.031
3.017
30.320
B
B
9
10
-1.174
B
B
37
36
2.958
-0.614
0.402
-1.943
BB_G9G10:C36C37_BB
32
2.236
-4.279
30.234
-3.602
-0.357
2.743
90.702
B
B
10
11
1.117
B
B
36
34
2.914
1.585
-1.179
-0.923
BB_G10G11:G34C36_BB
33
13.537
-9.536
89.894
-0.676
1.062
3.151
-15.008
B
B
11
12
-9.579
B
B
34
33
3.318
2.466
0.630
-0.797
BB_G11U12:A33G34_BB
34
3.653
14.192
-14.350
0.984
5.477
3.087
113.349
B
B
21
22
-1.328
B
B
19
17
3.016
-2.220
3.021
0.515
BB_A21C22:G17U19_BB
35
4.571
-2.736
113.275
0.332
-1.760
3.284
30.411
B
B
22
23
6.867
B
B
17
16
3.434
3.594
0.380
-1.144
BB_C22A23:U16G17_BB
36
0.444
-0.848
30.200
-2.923
-0.632
1.596
25.273
B
B
23
24
29.119
B
B
16
15
3.258
12.184
0.983
-2.332
BB_A23G24:U15U16_BB
37
-3.325
7.947
21.936
-8.155
-3.018
3.485
43.766
B
B
24
25
6.792
B
B
15
14
3.647
5.040
-0.410
-1.479
BB_G24G25:C14U15_BB
38
-5.469
7.369
43.160
-2.512
-0.023
2.882
35.677
B
B
25
26
12.243
B
B
14
13
3.410
7.449
-0.210
-2.240
BB_G25C26:G13C14_BB
39
0.621
-1.021
34.910
-4.706
0.431
2.356
71.969
B
B
26
27
5.489
B
B
13
31
2.743
6.434
-2.721
-1.343
BB_C26U27:A31G13_BB
40
7.984
-6.812
71.332
-1.312
2.525
2.705
-13.783
B
B
42
44
-11.580
B
B
72
71
2.793
2.758
-1.653
0.707
BB_G42A44:G71A72_BB
41
0.971
4.075
-13.471
-5.254
-6.077
3.582
66.813
B
B
44
45
8.730
B
B
71
70
3.677
9.587
1.645
-0.595
BB_A44C45:G70G71_BB
42
0.458
-0.417
66.200
-0.961
-1.474
2.217
33.900
B
B
45
46
26.692
B
B
70
69
3.243
14.963
-1.127
-1.974
BB_C45C46:G69G70_BB
43
-6.172
11.010
29.887
-5.529
1.049
2.850
34.166
B
B
46
47
20.080
B
B
69
68
3.606
11.569
-0.559
-1.765
BB_C46U47:A68G69_BB
44
-2.149
3.729
32.133
-4.869
0.605
3.110
94.698
B
B
47
48
1.133
B
B
68
66
2.959
1.666
2.438
-2.115
BB_U47G48:G66A68_BB
45
9.568
-6.511
94.317
-1.466
-1.498
0.459
-172.141
B
B
48
49
82.264
B
B
66
65
-0.143
-162.384
2.345
1.553
BB_G48A49:C65G66_BB
46
28.029
14.200
-117.652
-0.735
1.183
0.671
-174.833
B
B
49
51
73.567
B
B
65
64
-1.423
-143.838
-3.451
-1.089
BB_A49C51:G64C65_BB
47
99.086
50.678
-28.941
0.305
-1.892
2.517
33.366
B
B
51
52
16.754
B
B
64
63
3.115
9.492
-0.455
-1.760
BB_C51A52:U63G64_BB
48
-1.029
1.817
32.008
-4.452
0.643
3.002
38.376
B
B
52
53
14.037
B
B
63
62
3.299
9.144
-0.901
-0.850
BB_A52G53:C62U63_BB
49
0.577
-0.885
37.307
-2.410
1.440
2.775
34.246
B
B
53
54
7.329
B
B
62
61
3.098
4.296
0.324
-2.012
BB_G53G54:C61C62_BB
50
-3.888
6.632
33.767
-4.029
-1.103
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-07-01
1
1
2011-07-13
1
2
2011-11-16
1
3
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2008-05-08
REL
REL
MG
MAGNESIUM ION
TPP
THIAMINE DIPHOSPHATE
HOH
water
2CKY
PDB entry 2cky
PDB
experimental model
MG
78
2
MG
MG
78
A
MG
79
2
MG
MG
79
A
MG
80
2
MG
MG
80
A
MG
6
2
MG
MG
82
A
MG
81
2
MG
MG
81
A
TPP
82
3
TPP
TPP
83
A
MG
78
2
MG
MG
78
B
MG
79
2
MG
MG
79
B
MG
80
2
MG
MG
80
B
MG
81
2
MG
MG
81
B
MG
82
2
MG
MG
82
B
TPP
83
3
TPP
TPP
83
B
HOH
83
4
HOH
HOH
84
A
HOH
84
4
HOH
HOH
85
A
HOH
85
4
HOH
HOH
86
A
HOH
86
4
HOH
HOH
87
A
HOH
87
4
HOH
HOH
88
A
HOH
88
4
HOH
HOH
89
A
HOH
89
4
HOH
HOH
90
A
HOH
90
4
HOH
HOH
91
A
HOH
91
4
HOH
HOH
92
A
HOH
92
4
HOH
HOH
93
A
HOH
93
4
HOH
HOH
94
A
HOH
94
4
HOH
HOH
95
A
HOH
95
4
HOH
HOH
96
A
HOH
96
4
HOH
HOH
97
A
HOH
97
4
HOH
HOH
98
A
HOH
98
4
HOH
HOH
99
A
HOH
99
4
HOH
HOH
100
A
HOH
100
4
HOH
HOH
101
A
HOH
101
4
HOH
HOH
102
A
HOH
102
4
HOH
HOH
103
A
HOH
103
4
HOH
HOH
104
A
HOH
104
4
HOH
HOH
105
A
HOH
105
4
HOH
HOH
106
A
HOH
106
4
HOH
HOH
107
A
HOH
107
4
HOH
HOH
108
A
HOH
108
4
HOH
HOH
109
A
HOH
109
4
HOH
HOH
110
A
HOH
110
4
HOH
HOH
111
A
HOH
111
4
HOH
HOH
112
A
HOH
112
4
HOH
HOH
113
A
HOH
113
4
HOH
HOH
114
A
HOH
114
4
HOH
HOH
115
A
HOH
115
4
HOH
HOH
116
A
HOH
116
4
HOH
HOH
117
A
HOH
117
4
HOH
HOH
118
A
HOH
118
4
HOH
HOH
119
A
HOH
119
4
HOH
HOH
120
A
HOH
120
4
HOH
HOH
121
A
HOH
121
4
HOH
HOH
122
A
HOH
122
4
HOH
HOH
123
A
HOH
123
4
HOH
HOH
124
A
HOH
124
4
HOH
HOH
125
A
HOH
125
4
HOH
HOH
126
A
HOH
126
4
HOH
HOH
127
A
HOH
127
4
HOH
HOH
128
A
HOH
128
4
HOH
HOH
129
A
HOH
129
4
HOH
HOH
130
A
HOH
130
4
HOH
HOH
131
A
HOH
131
4
HOH
HOH
132
A
HOH
132
4
HOH
HOH
133
A
HOH
133
4
HOH
HOH
134
A
HOH
134
4
HOH
HOH
135
A
HOH
135
4
HOH
HOH
136
A
HOH
136
4
HOH
HOH
137
A
HOH
137
4
HOH
HOH
138
A
HOH
138
4
HOH
HOH
139
A
HOH
139
4
HOH
HOH
140
A
HOH
140
4
HOH
HOH
141
A
HOH
141
4
HOH
HOH
142
A
HOH
142
4
HOH
HOH
143
A
HOH
143
4
HOH
HOH
144
A
HOH
144
4
HOH
HOH
145
A
HOH
145
4
HOH
HOH
146
A
HOH
146
4
HOH
HOH
147
A
HOH
147
4
HOH
HOH
148
A
HOH
148
4
HOH
HOH
149
A
HOH
149
4
HOH
HOH
150
A
HOH
150
4
HOH
HOH
151
A
HOH
151
4
HOH
HOH
152
A
HOH
152
4
HOH
HOH
153
A
HOH
153
4
HOH
HOH
154
A
HOH
154
4
HOH
HOH
155
A
HOH
155
4
HOH
HOH
156
A
HOH
156
4
HOH
HOH
157
A
HOH
157
4
HOH
HOH
158
A
HOH
158
4
HOH
HOH
159
A
HOH
159
4
HOH
HOH
160
A
HOH
160
4
HOH
HOH
161
A
HOH
161
4
HOH
HOH
162
A
HOH
162
4
HOH
HOH
163
A
HOH
163
4
HOH
HOH
164
A
HOH
164
4
HOH
HOH
165
A
HOH
165
4
HOH
HOH
166
A
HOH
166
4
HOH
HOH
167
A
HOH
167
4
HOH
HOH
168
A
HOH
168
4
HOH
HOH
169
A
HOH
169
4
HOH
HOH
170
A
HOH
170
4
HOH
HOH
171
A
HOH
171
4
HOH
HOH
172
A
HOH
172
4
HOH
HOH
173
A
HOH
173
4
HOH
HOH
174
A
HOH
174
4
HOH
HOH
175
A
HOH
175
4
HOH
HOH
176
A
HOH
176
4
HOH
HOH
177
A
HOH
177
4
HOH
HOH
178
A
HOH
178
4
HOH
HOH
179
A
HOH
179
4
HOH
HOH
180
A
HOH
180
4
HOH
HOH
181
A
HOH
84
4
HOH
HOH
84
B
HOH
85
4
HOH
HOH
85
B
HOH
86
4
HOH
HOH
86
B
HOH
87
4
HOH
HOH
87
B
HOH
88
4
HOH
HOH
88
B
HOH
89
4
HOH
HOH
89
B
HOH
90
4
HOH
HOH
90
B
HOH
91
4
HOH
HOH
91
B
HOH
92
4
HOH
HOH
92
B
HOH
93
4
HOH
HOH
93
B
HOH
94
4
HOH
HOH
94
B
HOH
95
4
HOH
HOH
95
B
HOH
96
4
HOH
HOH
96
B
HOH
97
4
HOH
HOH
97
B
HOH
98
4
HOH
HOH
98
B
HOH
99
4
HOH
HOH
99
B
HOH
100
4
HOH
HOH
100
B
HOH
101
4
HOH
HOH
101
B
HOH
102
4
HOH
HOH
102
B
HOH
103
4
HOH
HOH
103
B
HOH
104
4
HOH
HOH
104
B
HOH
105
4
HOH
HOH
105
B
HOH
106
4
HOH
HOH
106
B
HOH
107
4
HOH
HOH
107
B
HOH
108
4
HOH
HOH
108
B
HOH
109
4
HOH
HOH
109
B
HOH
110
4
HOH
HOH
110
B
HOH
111
4
HOH
HOH
111
B
HOH
112
4
HOH
HOH
112
B
HOH
113
4
HOH
HOH
113
B
HOH
114
4
HOH
HOH
114
B
HOH
115
4
HOH
HOH
115
B
HOH
116
4
HOH
HOH
116
B
HOH
117
4
HOH
HOH
117
B
HOH
118
4
HOH
HOH
118
B
HOH
119
4
HOH
HOH
119
B
HOH
120
4
HOH
HOH
120
B
HOH
121
4
HOH
HOH
121
B
HOH
122
4
HOH
HOH
122
B
HOH
123
4
HOH
HOH
123
B
HOH
124
4
HOH
HOH
124
B
HOH
125
4
HOH
HOH
125
B
HOH
126
4
HOH
HOH
126
B
HOH
127
4
HOH
HOH
127
B
HOH
128
4
HOH
HOH
128
B
HOH
129
4
HOH
HOH
129
B
HOH
130
4
HOH
HOH
130
B
HOH
131
4
HOH
HOH
131
B
HOH
132
4
HOH
HOH
132
B
HOH
133
4
HOH
HOH
133
B
HOH
134
4
HOH
HOH
134
B
HOH
135
4
HOH
HOH
135
B
HOH
136
4
HOH
HOH
136
B
HOH
137
4
HOH
HOH
137
B
HOH
138
4
HOH
HOH
138
B
HOH
139
4
HOH
HOH
139
B
HOH
140
4
HOH
HOH
140
B
HOH
141
4
HOH
HOH
141
B
HOH
142
4
HOH
HOH
142
B
HOH
143
4
HOH
HOH
143
B
HOH
144
4
HOH
HOH
144
B
HOH
145
4
HOH
HOH
145
B
HOH
146
4
HOH
HOH
146
B
HOH
147
4
HOH
HOH
147
B
HOH
148
4
HOH
HOH
148
B
G
1
n
1
G
1
A
G
2
n
2
G
2
A
G
3
n
3
G
3
A
A
4
n
4
A
4
A
C
5
n
5
C
5
A
C
6
n
6
C
6
A
A
7
n
7
A
7
A
G
8
n
8
G
8
A
G
9
n
9
G
9
A
G
10
n
10
G
10
A
G
11
n
11
G
11
A
U
12
n
12
U
12
A
G
13
n
13
G
13
A
C
14
n
14
C
14
A
U
15
n
15
U
15
A
U
16
n
16
U
16
A
G
17
n
17
G
17
A
U
18
n
18
U
18
A
U
19
n
19
U
19
A
C
20
n
20
C
20
A
A
21
n
21
A
21
A
C
22
n
22
C
22
A
A
23
n
23
A
23
A
G
24
n
24
G
24
A
G
25
n
25
G
25
A
C
26
n
26
C
26
A
U
27
n
27
U
27
A
G
28
n
28
G
28
A
A
29
n
29
A
29
A
G
30
n
30
G
30
A
A
31
n
31
A
31
A
A
32
n
32
A
32
A
A
33
n
33
A
33
A
G
34
n
34
G
34
A
U
35
n
35
U
35
A
C
36
n
36
C
36
A
C
37
n
37
C
37
A
C
38
n
38
C
38
A
U
39
n
39
U
39
A
U
40
n
40
U
40
A
U
41
n
41
U
41
A
G
42
n
42
G
42
A
A
43
n
43
A
43
A
A
44
n
44
A
44
A
C
45
n
45
C
45
A
C
46
n
46
C
46
A
U
47
n
47
U
47
A
G
48
n
48
G
48
A
A
49
n
49
A
49
A
A
50
n
50
A
50
A
C
51
n
51
C
51
A
A
52
n
52
A
52
A
G
53
n
53
G
53
A
G
54
n
54
G
54
A
G
55
n
55
G
55
A
U
56
n
56
U
56
A
A
57
n
57
A
57
A
A
58
n
58
A
58
A
U
59
n
59
U
59
A
G
60
n
60
G
60
A
C
61
n
61
C
61
A
C
62
n
62
C
62
A
U
63
n
63
U
63
A
G
64
n
64
G
64
A
C
65
n
65
C
65
A
G
66
n
66
G
66
A
C
67
n
67
C
67
A
A
68
n
68
A
68
A
G
69
n
69
G
69
A
G
70
n
70
G
70
A
G
71
n
71
G
71
A
A
72
n
72
A
72
A
G
73
n
73
G
73
A
U
74
n
74
U
74
A
G
75
n
75
G
75
A
U
76
n
76
U
76
A
C
77
n
77
C
77
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
G
3
n
3
G
3
B
A
4
n
4
A
4
B
C
5
n
5
C
5
B
C
6
n
6
C
6
B
A
7
n
7
A
7
B
G
8
n
8
G
8
B
G
9
n
9
G
9
B
G
10
n
10
G
10
B
G
11
n
11
G
11
B
U
12
n
12
U
12
B
G
13
n
13
G
13
B
C
14
n
14
C
14
B
U
15
n
15
U
15
B
U
16
n
16
U
16
B
G
17
n
17
G
17
B
U
18
n
18
U
18
B
U
19
n
19
U
19
B
C
20
n
20
C
20
B
A
21
n
21
A
21
B
C
22
n
22
C
22
B
A
23
n
23
A
23
B
G
24
n
24
G
24
B
G
25
n
25
G
25
B
C
26
n
26
C
26
B
U
27
n
27
U
27
B
G
28
n
28
G
28
B
A
29
n
29
A
29
B
G
30
n
30
G
30
B
A
31
n
31
A
31
B
A
32
n
32
A
32
B
A
33
n
33
A
33
B
G
34
n
34
G
34
B
U
35
n
35
U
35
B
C
36
n
36
C
36
B
C
37
n
37
C
37
B
C
38
n
38
C
38
B
U
39
n
39
U
39
B
U
40
n
40
U
40
B
U
41
n
41
U
41
B
G
42
n
42
G
42
B
A
43
n
43
A
43
B
A
44
n
44
A
44
B
C
45
n
45
C
45
B
C
46
n
46
C
46
B
U
47
n
47
U
47
B
G
48
n
48
G
48
B
A
49
n
49
A
49
B
A
50
n
50
A
50
B
C
51
n
51
C
51
B
A
52
n
52
A
52
B
G
53
n
53
G
53
B
G
54
n
54
G
54
B
G
55
n
55
G
55
B
U
56
n
56
U
56
B
A
57
n
57
A
57
B
A
58
n
58
A
58
B
U
59
n
59
U
59
B
G
60
n
60
G
60
B
C
61
n
61
C
61
B
C
62
n
62
C
62
B
U
63
n
63
U
63
B
G
64
n
64
G
64
B
C
65
n
65
C
65
B
G
66
n
66
G
66
B
C
67
n
67
C
67
B
A
68
n
68
A
68
B
G
69
n
69
G
69
B
G
70
n
70
G
70
B
G
71
n
71
G
71
B
A
72
n
72
A
72
B
G
73
n
73
G
73
B
U
74
n
74
U
74
B
G
75
n
75
G
75
B
U
76
n
76
U
76
B
C
77
n
77
C
77
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
G
48
A
O6
G
48
1_555
A
MG
79
D
MG
MG
1_555
A
TPP
83
H
O2B
TPP
1_555
159.6
A
G
48
A
O6
G
48
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
93
O
O
HOH
1_555
79.7
A
TPP
83
H
O2B
TPP
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
93
O
O
HOH
1_555
88.4
A
G
48
A
O6
G
48
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
94
O
O
HOH
1_555
75.7
A
TPP
83
H
O2B
TPP
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
94
O
O
HOH
1_555
105.6
A
HOH
93
O
O
HOH
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
94
O
O
HOH
1_555
142.5
A
G
48
A
O6
G
48
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
95
O
O
HOH
1_555
97.1
A
TPP
83
H
O2B
TPP
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
95
O
O
HOH
1_555
102.2
A
HOH
93
O
O
HOH
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
95
O
O
HOH
1_555
106.4
A
HOH
94
O
O
HOH
1_555
A
MG
79
D
MG
MG
1_555
A
HOH
95
O
O
HOH
1_555
104.4
A
C
51
A
OP1
C
51
1_555
A
MG
80
E
MG
MG
1_555
A
A
52
A
OP2
A
52
1_555
63.5
A
C
51
A
OP1
C
51
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
96
O
O
HOH
1_555
74.5
A
A
52
A
OP2
A
52
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
96
O
O
HOH
1_555
68.1
A
C
51
A
OP1
C
51
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
97
O
O
HOH
1_555
68.1
A
A
52
A
OP2
A
52
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
97
O
O
HOH
1_555
73.5
A
HOH
96
O
O
HOH
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
97
O
O
HOH
1_555
135.2
A
C
51
A
OP1
C
51
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
98
O
O
HOH
1_555
151.0
A
A
52
A
OP2
A
52
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
98
O
O
HOH
1_555
89.6
A
HOH
96
O
O
HOH
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
98
O
O
HOH
1_555
106.8
A
HOH
97
O
O
HOH
1_555
A
MG
80
E
MG
MG
1_555
A
HOH
98
O
O
HOH
1_555
95.0
A
C
51
A
OP1
C
51
1_555
A
MG
80
E
MG
MG
1_555
B
HOH
90
P
O
HOH
1_555
94.4
A
A
52
A
OP2
A
52
1_555
A
MG
80
E
MG
MG
1_555
B
HOH
90
P
O
HOH
1_555
157.2
A
HOH
96
O
O
HOH
1_555
A
MG
80
E
MG
MG
1_555
B
HOH
90
P
O
HOH
1_555
102.2
A
HOH
97
O
O
HOH
1_555
A
MG
80
E
MG
MG
1_555
B
HOH
90
P
O
HOH
1_555
104.5
A
HOH
98
O
O
HOH
1_555
A
MG
80
E
MG
MG
1_555
B
HOH
90
P
O
HOH
1_555
113.1
A
TPP
83
H
O1A
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
TPP
83
H
O3B
TPP
1_555
80.1
A
TPP
83
H
O1A
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
89
O
O
HOH
1_555
145.7
A
TPP
83
H
O3B
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
89
O
O
HOH
1_555
72.2
A
TPP
83
H
O1A
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
90
O
O
HOH
1_555
119.8
A
TPP
83
H
O3B
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
90
O
O
HOH
1_555
157.7
A
HOH
89
O
O
HOH
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
90
O
O
HOH
1_555
85.6
A
TPP
83
H
O1A
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
91
O
O
HOH
1_555
115.1
A
TPP
83
H
O3B
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
91
O
O
HOH
1_555
78.5
A
HOH
89
O
O
HOH
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
91
O
O
HOH
1_555
79.1
A
HOH
90
O
O
HOH
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
91
O
O
HOH
1_555
99.4
A
TPP
83
H
O1A
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
92
O
O
HOH
1_555
88.0
A
TPP
83
H
O3B
TPP
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
92
O
O
HOH
1_555
65.5
A
HOH
89
O
O
HOH
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
92
O
O
HOH
1_555
62.5
A
HOH
90
O
O
HOH
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
92
O
O
HOH
1_555
102.9
A
HOH
91
O
O
HOH
1_555
A
MG
78
C
MG
MG
1_555
A
HOH
92
O
O
HOH
1_555
133.2
A
HOH
99
O
O
HOH
1_555
A
MG
81
G
MG
MG
1_555
A
HOH
100
O
O
HOH
1_555
129.8
A
HOH
99
O
O
HOH
1_555
A
MG
81
G
MG
MG
1_555
A
HOH
101
O
O
HOH
1_555
116.7
A
HOH
100
O
O
HOH
1_555
A
MG
81
G
MG
MG
1_555
A
HOH
101
O
O
HOH
1_555
113.4
A
HOH
99
O
O
HOH
1_555
A
MG
81
G
MG
MG
1_555
A
HOH
132
O
O
HOH
1_555
71.1
A
HOH
100
O
O
HOH
1_555
A
MG
81
G
MG
MG
1_555
A
HOH
132
O
O
HOH
1_555
86.0
A
HOH
101
O
O
HOH
1_555
A
MG
81
G
MG
MG
1_555
A
HOH
132
O
O
HOH
1_555
114.2
A
HOH
85
O
O
HOH
1_555
A
MG
82
F
MG
MG
1_555
A
HOH
86
O
O
HOH
1_555
71.9
A
HOH
85
O
O
HOH
1_555
A
MG
82
F
MG
MG
1_555
A
HOH
87
O
O
HOH
1_555
66.0
A
HOH
86
O
O
HOH
1_555
A
MG
82
F
MG
MG
1_555
A
HOH
87
O
O
HOH
1_555
127.8
A
HOH
85
O
O
HOH
1_555
A
MG
82
F
MG
MG
1_555
A
HOH
88
O
O
HOH
1_555
91.7
A
HOH
86
O
O
HOH
1_555
A
MG
82
F
MG
MG
1_555
A
HOH
88
O
O
HOH
1_555
110.0
A
HOH
87
O
O
HOH
1_555
A
MG
82
F
MG
MG
1_555
A
HOH
88
O
O
HOH
1_555
100.8
A
HOH
84
O
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
C
51
B
OP1
C
51
1_555
113.2
A
HOH
84
O
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
87
P
O
HOH
1_555
114.0
B
C
51
B
OP1
C
51
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
87
P
O
HOH
1_555
66.0
A
HOH
84
O
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
88
P
O
HOH
1_555
104.0
B
C
51
B
OP1
C
51
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
88
P
O
HOH
1_555
142.8
B
HOH
87
P
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
88
P
O
HOH
1_555
97.5
A
HOH
84
O
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
89
P
O
HOH
1_555
115.5
B
C
51
B
OP1
C
51
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
89
P
O
HOH
1_555
78.0
B
HOH
87
P
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
89
P
O
HOH
1_555
126.9
B
HOH
88
P
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
B
HOH
89
P
O
HOH
1_555
88.2
B
G
48
B
O6
G
48
1_555
B
MG
78
I
MG
MG
1_555
B
G
66
B
O6
G
66
1_555
71.1
B
G
48
B
O6
G
48
1_555
B
MG
78
I
MG
MG
1_555
B
TPP
83
N
O2B
TPP
1_555
163.2
B
G
66
B
O6
G
66
1_555
B
MG
78
I
MG
MG
1_555
B
TPP
83
N
O2B
TPP
1_555
99.6
B
G
48
B
O6
G
48
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
84
P
O
HOH
1_555
80.2
B
G
66
B
O6
G
66
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
84
P
O
HOH
1_555
64.9
B
TPP
83
N
O2B
TPP
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
84
P
O
HOH
1_555
83.2
B
G
48
B
O6
G
48
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
85
P
O
HOH
1_555
92.9
B
G
66
B
O6
G
66
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
85
P
O
HOH
1_555
159.8
B
TPP
83
N
O2B
TPP
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
85
P
O
HOH
1_555
92.6
B
HOH
84
P
O
HOH
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
85
P
O
HOH
1_555
101.1
B
G
48
B
O6
G
48
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
86
P
O
HOH
1_555
77.8
B
G
66
B
O6
G
66
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
86
P
O
HOH
1_555
81.8
B
TPP
83
N
O2B
TPP
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
86
P
O
HOH
1_555
115.4
B
HOH
84
P
O
HOH
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
86
P
O
HOH
1_555
144.6
B
HOH
85
P
O
HOH
1_555
B
MG
78
I
MG
MG
1_555
B
HOH
86
P
O
HOH
1_555
107.4
B
C
67
B
OP2
C
67
1_555
B
MG
82
M
MG
MG
1_555
B
HOH
95
P
O
HOH
1_555
75.8
B
C
67
B
OP2
C
67
1_555
B
MG
82
M
MG
MG
1_555
B
HOH
96
P
O
HOH
1_555
63.5
B
HOH
95
P
O
HOH
1_555
B
MG
82
M
MG
MG
1_555
B
HOH
96
P
O
HOH
1_555
90.6
B
TPP
83
N
O2A
TPP
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
91
P
O
HOH
1_555
96.7
B
TPP
83
N
O2A
TPP
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
92
P
O
HOH
1_555
154.6
B
HOH
91
P
O
HOH
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
92
P
O
HOH
1_555
108.7
B
TPP
83
N
O2A
TPP
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
93
P
O
HOH
1_555
77.5
B
HOH
91
P
O
HOH
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
93
P
O
HOH
1_555
108.0
B
HOH
92
P
O
HOH
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
93
P
O
HOH
1_555
93.7
B
TPP
83
N
O2A
TPP
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
94
P
O
HOH
1_555
69.4
B
HOH
91
P
O
HOH
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
94
P
O
HOH
1_555
108.3
B
HOH
92
P
O
HOH
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
94
P
O
HOH
1_555
102.0
B
HOH
93
P
O
HOH
1_555
B
MG
80
K
MG
MG
1_555
B
HOH
94
P
O
HOH
1_555
132.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
MG
82
M
MG
1
B
HOH
121
P
HOH
1
B
B
OP1
O
C
HOH
65
100
2.17
1
3.97
0.60
126.00
129.97
A
A
A
N3
C4
N9
G
G
G
1
1
1
N
1
4.67
0.70
108.50
113.17
A
A
A
O4'
C1'
N1
C
C
C
5
5
5
N
1
2.45
0.40
120.30
122.75
A
A
A
C6
N1
C2
C
C
C
6
6
6
N
1
5.05
0.70
108.50
113.55
A
A
A
O4'
C1'
N9
A
A
A
7
7
7
N
1
-3.83
0.60
128.60
124.77
A
A
A
C5
C6
O6
G
G
G
8
8
8
N
1
4.70
0.70
108.50
113.20
A
A
A
O4'
C1'
N9
G
G
G
9
9
9
N
1
4.23
0.50
111.50
115.73
A
A
A
C5
C6
N1
G
G
G
10
10
10
N
1
-5.07
0.60
127.00
121.93
A
A
A
C2
N3
C4
U
U
U
12
12
12
N
1
-5.97
0.70
122.80
116.83
A
A
A
N1
C2
O2
U
U
U
12
12
12
N
1
-8.32
1.10
112.00
103.68
A
A
A
N1
C1'
C2'
C
C
C
14
14
14
N
1
9.97
0.70
108.50
118.47
A
A
A
O4'
C1'
N1
C
C
C
14
14
14
N
1
-6.92
1.00
102.60
95.68
A
A
A
C4'
C3'
C2'
G
G
G
17
17
17
N
1
5.30
0.70
108.50
113.80
A
A
A
O4'
C1'
N9
A
A
A
23
23
23
N
1
-7.74
1.10
112.00
104.26
A
A
A
N9
C1'
C2'
G
G
G
25
25
25
N
1
7.47
0.70
108.50
115.97
A
A
A
O4'
C1'
N9
G
G
G
25
25
25
N
1
-11.25
1.10
112.00
100.75
A
A
A
N9
C1'
C2'
G
G
G
28
28
28
N
1
6.44
0.70
108.50
114.94
A
A
A
O4'
C1'
N9
G
G
G
28
28
28
N
1
-6.45
0.80
109.40
102.95
A
A
A
O5'
C5'
C4'
A
A
A
31
31
31
N
1
6.55
0.70
108.50
115.05
A
A
A
O4'
C1'
N9
A
A
A
31
31
31
N
1
5.20
0.60
118.60
123.80
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
1
-5.23
0.80
123.70
118.47
A
A
A
C5
C6
N6
A
A
A
31
31
31
N
1
-6.11
0.70
101.30
95.19
A
A
A
C3'
C2'
C1'
A
A
A
32
32
32
N
1
11.01
1.20
119.70
130.71
A
A
A
C3'
O3'
P
A
A
G
33
33
34
Y
1
-4.84
0.70
101.30
96.46
A
A
A
C3'
C2'
C1'
U
U
U
35
35
35
N
1
-4.89
0.80
109.40
104.51
A
A
A
O5'
C5'
C4'
C
C
C
36
36
36
N
1
2.81
0.40
120.30
123.11
A
A
A
C6
N1
C2
C
C
C
37
37
37
N
1
4.98
0.70
108.50
113.48
A
A
A
O4'
C1'
N1
C
C
C
38
38
38
N
1
-3.80
0.60
125.90
122.10
A
A
A
C5
C4
O4
U
U
U
39
39
39
N
1
-5.25
0.80
109.40
104.15
A
A
A
O5'
C5'
C4'
U
U
U
40
40
40
N
1
-6.03
1.00
105.80
99.77
A
A
A
O4'
C1'
C2'
U
U
U
40
40
40
N
1
-8.71
0.90
105.70
96.99
A
A
A
O5'
P
OP2
A
A
A
43
43
43
N
1
-6.35
0.80
109.40
103.05
A
A
A
O5'
C5'
C4'
A
A
A
43
43
43
N
1
-15.66
1.40
115.20
99.54
A
A
A
C5'
C4'
C3'
A
A
A
43
43
43
N
1
-4.79
0.60
118.60
113.81
A
A
A
N1
C6
N6
A
A
A
43
43
43
N
1
3.96
0.60
118.60
122.56
A
A
A
N1
C6
N6
A
A
A
44
44
44
N
1
-5.97
0.90
105.70
99.73
A
A
A
O5'
P
OP1
C
C
C
45
45
45
N
1
-15.72
1.40
115.20
99.48
A
A
A
C5'
C4'
C3'
C
C
C
45
45
45
N
1
-5.76
0.70
118.00
112.24
A
A
A
N3
C4
N4
C
C
C
45
45
45
N
1
7.27
0.70
120.20
127.47
A
A
A
C5
C4
N4
C
C
C
45
45
45
N
1
9.38
1.10
110.50
119.88
A
A
A
O3'
P
OP2
C
C
C
45
46
46
Y
1
-6.74
0.80
109.40
102.66
A
A
A
O5'
C5'
C4'
C
C
C
46
46
46
N
1
-2.61
0.40
121.90
119.29
A
A
A
N3
C4
C5
C
C
C
46
46
46
N
1
-5.47
0.60
118.90
113.43
A
A
A
N1
C2
O2
C
C
C
46
46
46
N
1
9.84
1.50
119.60
129.44
A
A
A
OP1
P
OP2
U
U
U
47
47
47
N
1
-4.94
0.80
108.20
103.26
A
A
A
O4'
C1'
N9
G
G
G
48
48
48
N
1
6.66
0.70
108.50
115.16
A
A
A
O4'
C1'
N9
A
A
A
49
49
49
N
1
-6.73
0.50
129.30
122.57
A
A
A
N1
C2
N3
A
A
A
49
49
49
N
1
8.14
0.50
110.60
118.74
A
A
A
C2
N3
C4
A
A
A
49
49
49
N
1
5.30
0.60
118.60
123.90
A
A
A
C6
N1
C2
A
A
A
50
50
50
N
1
-3.97
0.50
129.30
125.33
A
A
A
N1
C2
N3
A
A
A
50
50
50
N
1
7.39
0.70
108.50
115.89
A
A
A
O4'
C1'
N1
C
C
C
51
51
51
N
1
8.70
1.30
114.00
122.70
A
A
A
N9
C1'
C2'
A
A
A
52
52
52
N
1
-4.47
0.50
110.70
106.23
A
A
A
C4
C5
N7
A
A
A
52
52
52
N
1
3.55
0.50
103.90
107.45
A
A
A
C5
N7
C8
A
A
A
52
52
52
N
1
3.06
0.40
105.80
108.86
A
A
A
N9
C4
C5
A
A
A
52
52
52
N
1
5.10
0.70
132.30
137.40
A
A
A
C6
C5
N7
A
A
A
52
52
52
N
1
-5.66
0.60
118.60
112.94
A
A
A
N1
C6
N6
A
A
A
52
52
52
N
1
5.06
0.80
123.70
128.76
A
A
A
C5
C6
N6
A
A
A
52
52
52
N
1
-3.47
0.50
111.90
108.43
A
A
A
C2
N3
C4
G
G
G
53
53
53
N
1
-5.02
0.80
109.40
104.38
A
A
A
O5'
C5'
C4'
G
G
G
55
55
55
N
1
-4.05
0.60
127.00
122.95
A
A
A
C2
N3
C4
U
U
U
56
56
56
N
1
6.53
0.90
109.80
116.33
A
A
A
C5'
C4'
O4'
A
A
A
57
57
57
N
1
3.16
0.50
103.90
107.06
A
A
A
C5
N7
C8
A
A
A
57
57
57
N
1
-2.63
0.40
121.90
119.27
A
A
A
N3
C4
C5
C
C
C
61
61
61
N
1
5.41
0.50
117.40
122.81
A
A
A
C4
C5
C6
C
C
C
61
61
61
N
1
-4.27
0.50
121.00
116.73
A
A
A
C5
C6
N1
C
C
C
61
61
61
N
1
-5.24
0.60
118.90
113.66
A
A
A
N1
C2
O2
C
C
C
61
61
61
N
1
-10.98
1.40
115.20
104.22
A
A
A
C5'
C4'
C3'
C
C
C
62
62
62
N
1
4.25
0.60
118.90
123.15
A
A
A
N1
C2
O2
C
C
C
62
62
62
N
1
-7.49
1.00
104.00
96.51
A
A
A
O4'
C4'
C3'
U
U
U
63
63
63
N
1
-5.97
0.80
109.40
103.43
A
A
A
O5'
C5'
C4'
G
G
G
64
64
64
N
1
-15.35
1.40
115.20
99.85
A
A
A
C5'
C4'
C3'
G
G
G
64
64
64
N
1
9.65
1.50
119.60
129.25
A
A
A
OP1
P
OP2
C
C
C
65
65
65
N
1
-6.10
0.90
105.70
99.60
A
A
A
O5'
P
OP1
C
C
C
65
65
65
N
1
-4.86
0.70
118.00
113.14
A
A
A
N3
C4
N4
C
C
C
65
65
65
N
1
6.59
0.70
120.20
126.79
A
A
A
C5
C4
N4
C
C
C
65
65
65
N
1
-6.35
0.60
125.10
118.75
A
A
A
C6
N1
C2
G
G
G
66
66
66
N
1
-5.87
0.70
119.90
114.03
A
A
A
N3
C2
N2
G
G
G
66
66
66
N
1
6.28
0.60
119.90
126.18
A
A
A
N1
C6
O6
G
G
G
66
66
66
N
1
-8.97
0.60
128.60
119.63
A
A
A
C5
C6
O6
G
G
G
66
66
66
N
1
-5.55
0.60
125.10
119.55
A
A
A
C6
N1
C2
G
G
G
71
71
71
N
1
3.06
0.50
111.90
114.96
A
A
A
C2
N3
C4
G
G
G
71
71
71
N
1
3.55
0.50
111.50
115.05
A
A
A
C5
C6
N1
G
G
G
71
71
71
N
1
7.03
0.90
116.20
123.23
A
A
A
N1
C2
N2
G
G
G
71
71
71
N
1
-7.22
0.70
119.90
112.68
A
A
A
N3
C2
N2
G
G
G
71
71
71
N
1
-7.00
0.60
128.60
121.60
A
A
A
C5
C6
O6
G
G
G
71
71
71
N
1
-6.36
0.90
105.70
99.34
A
A
A
O5'
P
OP1
A
A
A
72
72
72
N
1
-9.61
1.60
120.90
111.29
A
A
A
P
O5'
C5'
A
A
A
72
72
72
N
1
10.58
1.60
120.90
131.48
A
A
A
P
O5'
C5'
G
G
G
73
73
73
N
1
-9.45
1.20
109.10
99.65
A
A
A
C5'
C4'
O4'
G
G
G
73
73
73
N
1
-7.33
0.80
108.20
100.87
A
A
A
O4'
C1'
N9
G
G
G
73
73
73
N
1
5.43
0.90
109.80
115.23
A
A
A
C5'
C4'
O4'
U
U
U
74
74
74
N
1
-8.10
0.70
109.70
101.60
A
A
A
C1'
O4'
C4'
U
U
U
74
74
74
N
1
6.69
0.70
108.50
115.19
A
A
A
O4'
C1'
N1
U
U
U
74
74
74
N
1
-11.29
1.10
112.00
100.71
B
B
B
N9
C1'
C2'
G
G
G
3
3
3
N
1
-7.55
1.00
102.60
95.05
B
B
B
C4'
C3'
C2'
C
C
C
5
5
5
N
1
7.82
1.20
119.70
127.52
B
B
B
C3'
O3'
P
C
C
C
5
5
6
Y
1
9.54
1.20
119.70
129.24
B
B
B
C3'
O3'
P
G
G
G
8
8
9
Y
1
-5.58
0.80
108.20
102.62
B
B
B
O4'
C1'
N9
G
G
G
11
11
11
N
1
5.16
0.80
101.50
106.66
B
B
B
C3'
C2'
C1'
U
U
U
12
12
12
N
1
9.19
1.20
119.70
128.89
B
B
B
C3'
O3'
P
U
U
G
12
12
13
Y
1
9.33
1.20
110.70
120.03
B
B
B
O5'
P
OP1
U
U
U
16
16
16
N
1
8.44
1.20
110.70
119.14
B
B
B
O5'
P
OP1
G
G
G
17
17
17
N
1
-2.43
0.40
110.80
108.37
B
B
B
C4
C5
N7
G
G
G
17
17
17
N
1
7.25
0.70
108.50
115.75
B
B
B
O4'
C1'
N1
U
U
U
18
18
18
N
1
-6.52
0.70
101.30
94.78
B
B
B
C3'
C2'
C1'
U
U
U
19
19
19
N
1
4.44
0.70
108.50
112.94
B
B
B
O4'
C1'
N9
A
A
A
23
23
23
N
1
-7.37
1.10
112.00
104.63
B
B
B
N9
C1'
C2'
G
G
G
25
25
25
N
1
6.99
0.70
108.50
115.49
B
B
B
O4'
C1'
N1
C
C
C
26
26
26
N
1
-3.66
0.60
128.60
124.94
B
B
B
C5
C6
O6
G
G
G
28
28
28
N
1
-7.39
0.70
109.70
102.31
B
B
B
C1'
O4'
C4'
A
A
A
31
31
31
N
1
-5.81
0.70
101.30
95.49
B
B
B
C3'
C2'
C1'
A
A
A
32
32
32
N
1
-4.80
0.70
109.70
104.90
B
B
B
C1'
O4'
C4'
U
U
U
35
35
35
N
1
7.28
0.70
108.50
115.78
B
B
B
O4'
C1'
N1
U
U
U
35
35
35
N
1
-5.56
0.70
101.30
95.74
B
B
B
C3'
C2'
C1'
U
U
U
40
40
40
N
1
4.21
0.70
108.50
112.71
B
B
B
O4'
C1'
N1
U
U
U
41
41
41
N
1
4.62
0.60
119.90
124.52
B
B
B
N1
C6
O6
G
G
G
42
42
42
N
1
-4.57
0.60
128.60
124.03
B
B
B
C5
C6
O6
G
G
G
42
42
42
N
1
-10.28
1.40
115.20
104.92
B
B
B
C5'
C4'
C3'
A
A
A
43
43
43
N
1
4.74
0.70
108.50
113.24
B
B
B
O4'
C1'
N9
A
A
A
43
43
43
N
1
-3.14
0.50
129.30
126.16
B
B
B
N1
C2
N3
A
A
A
44
44
44
N
1
3.49
0.50
110.70
114.19
B
B
B
C4
C5
N7
A
A
A
44
44
44
N
1
-11.85
1.40
115.20
103.35
B
B
B
C5'
C4'
C3'
C
C
C
45
45
45
N
1
-3.64
0.60
118.90
115.26
B
B
B
N1
C2
O2
C
C
C
45
45
45
N
1
2.58
0.40
120.30
122.88
B
B
B
C6
N1
C2
C
C
C
46
46
46
N
1
5.57
0.70
121.90
127.47
B
B
B
N3
C2
O2
C
C
C
46
46
46
N
1
-9.47
0.90
105.70
96.23
B
B
B
O5'
P
OP2
U
U
U
47
47
47
N
1
11.64
1.60
120.90
132.54
B
B
B
P
O5'
C5'
U
U
U
47
47
47
N
1
3.93
0.60
118.60
122.53
B
B
B
N1
C6
N6
A
A
A
49
49
49
N
1
-3.00
0.50
129.30
126.30
B
B
B
N1
C2
N3
A
A
A
50
50
50
N
1
9.99
1.60
120.90
130.89
B
B
B
P
O5'
C5'
C
C
C
51
51
51
N
1
3.23
0.50
110.60
113.83
B
B
B
C2
N3
C4
A
A
A
52
52
52
N
1
4.34
0.70
132.30
136.64
B
B
B
C6
C5
N7
A
A
A
52
52
52
N
1
5.06
0.70
108.50
113.56
B
B
B
O4'
C1'
N9
G
G
G
54
54
54
N
1
8.68
1.20
119.70
128.38
B
B
B
C3'
O3'
P
G
G
G
54
54
55
Y
1
-5.89
0.80
109.40
103.51
B
B
B
O5'
C5'
C4'
U
U
U
56
56
56
N
1
8.10
0.70
108.50
116.60
B
B
B
O4'
C1'
N1
U
U
U
56
56
56
N
1
12.84
1.30
114.00
126.84
B
B
B
N9
C1'
C2'
A
A
A
57
57
57
N
1
-3.92
0.50
129.30
125.38
B
B
B
N1
C2
N3
A
A
A
57
57
57
N
1
4.38
0.50
110.60
114.98
B
B
B
C2
N3
C4
A
A
A
57
57
57
N
1
-3.18
0.50
117.00
113.82
B
B
B
C4
C5
C6
A
A
A
57
57
57
N
1
4.37
0.70
132.30
136.67
B
B
B
C6
C5
N7
A
A
A
57
57
57
N
1
4.74
0.70
108.50
113.24
B
B
B
O4'
C1'
N9
G
G
G
60
60
60
N
1
5.99
0.70
108.50
114.49
B
B
B
O4'
C1'
N1
C
C
C
61
61
61
N
1
3.01
0.50
117.40
120.41
B
B
B
C4
C5
C6
C
C
C
61
61
61
N
1
7.33
1.10
110.50
117.83
B
B
B
O3'
P
OP2
C
U
U
62
63
63
Y
1
-5.55
0.80
109.40
103.85
B
B
B
O5'
C5'
C4'
U
U
U
63
63
63
N
1
-3.91
0.50
104.30
100.39
B
B
B
C5
N7
C8
G
G
G
64
64
64
N
1
4.39
0.50
113.10
117.49
B
B
B
N7
C8
N9
G
G
G
64
64
64
N
1
-2.46
0.40
106.40
103.94
B
B
B
C8
N9
C4
G
G
G
64
64
64
N
1
4.86
0.70
108.50
113.36
B
B
B
O4'
C1'
N1
C
C
C
65
65
65
N
1
4.61
0.50
119.90
124.51
B
B
B
C2
N3
C4
C
C
C
65
65
65
N
1
4.88
0.70
120.20
125.08
B
B
B
C5
C4
N4
C
C
C
65
65
65
N
1
-3.68
0.60
123.90
120.22
B
B
B
N1
C2
N3
G
G
G
66
66
66
N
1
7.69
0.50
111.90
119.59
B
B
B
C2
N3
C4
G
G
G
66
66
66
N
1
-3.06
0.50
128.60
125.54
B
B
B
N3
C4
C5
G
G
G
66
66
66
N
1
3.66
0.50
111.50
115.16
B
B
B
C5
C6
N1
G
G
G
66
66
66
N
1
6.09
0.90
116.20
122.29
B
B
B
N1
C2
N2
G
G
G
66
66
66
N
1
-5.90
0.60
128.60
122.70
B
B
B
C5
C6
O6
G
G
G
66
66
66
N
1
12.36
1.50
119.60
131.96
B
B
B
OP1
P
OP2
C
C
C
67
67
67
N
1
-6.79
0.90
105.70
98.91
B
B
B
O5'
P
OP2
C
C
C
67
67
67
N
1
-13.20
1.40
115.20
102.00
B
B
B
C5'
C4'
C3'
C
C
C
67
67
67
N
1
7.48
0.90
109.80
117.28
B
B
B
C5'
C4'
O4'
C
C
C
67
67
67
N
1
3.63
0.50
119.90
123.53
B
B
B
C2
N3
C4
C
C
C
67
67
67
N
1
5.61
0.90
109.80
115.41
B
B
B
C5'
C4'
O4'
A
A
A
68
68
68
N
1
3.17
0.50
111.90
115.07
B
B
B
C2
N3
C4
G
G
G
69
69
69
N
1
4.23
0.70
108.50
112.73
B
B
B
O4'
C1'
N9
G
G
G
70
70
70
N
1
4.35
0.70
108.50
112.85
B
B
B
O4'
C1'
N9
A
A
A
72
72
72
N
1
7.63
1.20
119.70
127.33
B
B
B
C3'
O3'
P
U
U
G
74
74
75
Y
1
5.01
0.70
108.50
113.51
B
B
B
O4'
C1'
N1
U
U
U
76
76
76
N
1
8.01
1.30
114.00
122.01
B
B
B
N1
C1'
C2'
C
C
C
77
77
77
N
1
A
A
O3'
C3'
C
C
26
26
0.089
0.012
1.427
1.516
N
1
A
A
N7
C8
A
A
29
29
0.049
0.007
1.311
1.360
N
1
A
A
O5'
C5'
A
A
43
43
-0.160
0.009
1.420
1.260
N
1
A
A
C8
N9
A
A
43
43
0.056
0.008
1.373
1.429
N
1
A
A
O5'
C5'
C
C
45
45
-0.114
0.009
1.420
1.306
N
1
A
A
N7
C8
G
G
48
48
-0.039
0.006
1.305
1.266
N
1
A
A
O3'
C3'
C
C
51
51
0.073
0.012
1.427
1.500
N
1
A
A
C6
N1
G
G
53
53
-0.043
0.007
1.391
1.348
N
1
A
A
O5'
C5'
G
G
60
60
-0.084
0.009
1.420
1.336
N
1
A
A
O5'
C5'
G
G
64
64
-0.124
0.009
1.420
1.296
N
1
A
A
C5
N7
G
G
64
64
0.048
0.006
1.388
1.436
N
1
A
A
C4
C5
G
G
66
66
-0.063
0.007
1.379
1.316
N
1
A
A
C4
C5
C
C
67
67
0.050
0.008
1.425
1.475
N
1
A
A
C4
C5
G
G
71
71
-0.060
0.007
1.379
1.319
N
1
A
A
N7
C8
G
G
71
71
-0.045
0.006
1.305
1.260
N
1
B
B
O3'
C3'
U
U
27
27
0.088
0.012
1.427
1.515
N
1
B
B
O5'
C5'
C
C
45
45
-0.087
0.009
1.420
1.333
N
1
B
B
N7
C8
G
G
48
48
-0.040
0.006
1.305
1.265
N
32.5744
-10.8821
-12.7815
0.2568
0.2093
0.238
0.235
2.25
15.0
1721
22992
22939
7.50
99.7
RANDOM
1
anisotropic
THROUGHOUT
1.33
0
MOLECULAR REPLACEMENT
PDB entry 2cky
Engh & Huber
0.35
2.25
15.0
163
3535
62
3310
0
66.6
2.25
15.0
3D2G
22992
0.0
-3.0
0.075
1
23.45
7.1
100.0
0.972
2.25
2.31
2.0
2256
7.2
100.0
refinement
PHENIX
(phenix.refine)
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASES
Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
metalc
2.316
A
G
48
A
O6
G
48
1_555
A
MG
79
D
MG
MG
1_555
metalc
2.426
A
C
51
A
OP1
C
51
1_555
A
MG
80
E
MG
MG
1_555
metalc
2.392
A
A
52
A
OP2
A
52
1_555
A
MG
80
E
MG
MG
1_555
metalc
1.945
A
MG
78
C
MG
MG
1_555
A
TPP
83
H
O1A
TPP
1_555
metalc
2.392
A
MG
78
C
MG
MG
1_555
A
TPP
83
H
O3B
TPP
1_555
metalc
2.164
A
MG
78
C
MG
MG
1_555
A
HOH
89
O
O
HOH
1_555
metalc
2.213
A
MG
78
C
MG
MG
1_555
A
HOH
90
O
O
HOH
1_555
metalc
2.194
A
MG
78
C
MG
MG
1_555
A
HOH
91
O
O
HOH
1_555
metalc
2.171
A
MG
78
C
MG
MG
1_555
A
HOH
92
O
O
HOH
1_555
metalc
2.008
A
MG
79
D
MG
MG
1_555
A
TPP
83
H
O2B
TPP
1_555
metalc
2.147
A
MG
79
D
MG
MG
1_555
A
HOH
93
O
O
HOH
1_555
metalc
2.132
A
MG
79
D
MG
MG
1_555
A
HOH
94
O
O
HOH
1_555
metalc
2.173
A
MG
79
D
MG
MG
1_555
A
HOH
95
O
O
HOH
1_555
metalc
2.239
A
MG
80
E
MG
MG
1_555
A
HOH
96
O
O
HOH
1_555
metalc
2.179
A
MG
80
E
MG
MG
1_555
A
HOH
97
O
O
HOH
1_555
metalc
2.142
A
MG
80
E
MG
MG
1_555
A
HOH
98
O
O
HOH
1_555
metalc
2.134
A
MG
80
E
MG
MG
1_555
B
HOH
90
P
O
HOH
1_555
metalc
2.202
A
MG
81
G
MG
MG
1_555
A
HOH
99
O
O
HOH
1_555
metalc
2.174
A
MG
81
G
MG
MG
1_555
A
HOH
100
O
O
HOH
1_555
metalc
2.169
A
MG
81
G
MG
MG
1_555
A
HOH
101
O
O
HOH
1_555
metalc
2.438
A
MG
81
G
MG
MG
1_555
A
HOH
132
O
O
HOH
1_555
metalc
2.198
A
MG
82
F
MG
MG
1_555
A
HOH
85
O
O
HOH
1_555
metalc
2.215
A
MG
82
F
MG
MG
1_555
A
HOH
86
O
O
HOH
1_555
metalc
2.202
A
MG
82
F
MG
MG
1_555
A
HOH
87
O
O
HOH
1_555
metalc
2.209
A
MG
82
F
MG
MG
1_555
A
HOH
88
O
O
HOH
1_555
metalc
2.130
A
HOH
84
O
O
HOH
1_555
B
MG
79
J
MG
MG
1_555
metalc
2.488
B
A
29
B
N7
A
29
1_555
B
MG
81
L
MG
MG
1_555
metalc
2.414
B
G
48
B
O6
G
48
1_555
B
MG
78
I
MG
MG
1_555
metalc
2.217
B
C
51
B
OP1
C
51
1_555
B
MG
79
J
MG
MG
1_555
metalc
2.465
B
G
66
B
O6
G
66
1_555
B
MG
78
I
MG
MG
1_555
metalc
2.486
B
C
67
B
OP2
C
67
1_555
B
MG
82
M
MG
MG
1_555
metalc
1.968
B
MG
78
I
MG
MG
1_555
B
TPP
83
N
O2B
TPP
1_555
metalc
2.155
B
MG
78
I
MG
MG
1_555
B
HOH
84
P
O
HOH
1_555
metalc
2.186
B
MG
78
I
MG
MG
1_555
B
HOH
85
P
O
HOH
1_555
metalc
2.123
B
MG
78
I
MG
MG
1_555
B
HOH
86
P
O
HOH
1_555
metalc
2.177
B
MG
79
J
MG
MG
1_555
B
HOH
87
P
O
HOH
1_555
metalc
2.119
B
MG
79
J
MG
MG
1_555
B
HOH
88
P
O
HOH
1_555
metalc
2.179
B
MG
79
J
MG
MG
1_555
B
HOH
89
P
O
HOH
1_555
metalc
2.318
B
MG
80
K
MG
MG
1_555
B
TPP
83
N
O2A
TPP
1_555
metalc
2.130
B
MG
80
K
MG
MG
1_555
B
HOH
91
P
O
HOH
1_555
metalc
2.189
B
MG
80
K
MG
MG
1_555
B
HOH
92
P
O
HOH
1_555
metalc
2.205
B
MG
80
K
MG
MG
1_555
B
HOH
93
P
O
HOH
1_555
metalc
2.209
B
MG
80
K
MG
MG
1_555
B
HOH
94
P
O
HOH
1_555
metalc
2.116
B
MG
82
M
MG
MG
1_555
B
HOH
95
P
O
HOH
1_555
metalc
2.497
B
MG
82
M
MG
MG
1_555
B
HOH
96
P
O
HOH
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
77
A
N3
C
77
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
77
A
O2
C
77
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
77
A
N4
C
77
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
A
U
76
A
N3
U
76
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
A
U
76
A
O4
U
76
1_555
hydrog
WATSON-CRICK
A
C
5
A
N3
C
5
1_555
A
G
75
A
N1
G
75
1_555
hydrog
WATSON-CRICK
A
C
5
A
N4
C
5
1_555
A
G
75
A
O6
G
75
1_555
hydrog
WATSON-CRICK
A
C
5
A
O2
C
5
1_555
A
G
75
A
N2
G
75
1_555
hydrog
WATSON-CRICK
A
C
6
A
N3
C
6
1_555
A
G
73
A
N1
G
73
1_555
hydrog
WATSON-CRICK
A
C
6
A
N4
C
6
1_555
A
G
73
A
O6
G
73
1_555
hydrog
WATSON-CRICK
A
C
6
A
O2
C
6
1_555
A
G
73
A
N2
G
73
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
A
U
39
A
N3
U
39
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
A
U
39
A
O4
U
39
1_555
hydrog
WATSON-CRICK
A
G
8
A
N1
G
8
1_555
A
C
38
A
N3
C
38
1_555
hydrog
WATSON-CRICK
A
G
8
A
N2
G
8
1_555
A
C
38
A
O2
C
38
1_555
hydrog
WATSON-CRICK
A
G
8
A
O6
G
8
1_555
A
C
38
A
N4
C
38
1_555
hydrog
G-A MISPAIR
A
G
8
A
N2
G
8
1_555
A
A
72
A
N3
A
72
1_555
hydrog
WATSON-CRICK
A
G
9
A
N1
G
9
1_555
A
C
37
A
N3
C
37
1_555
hydrog
WATSON-CRICK
A
G
9
A
N2
G
9
1_555
A
C
37
A
O2
C
37
1_555
hydrog
WATSON-CRICK
A
G
9
A
O6
G
9
1_555
A
C
37
A
N4
C
37
1_555
hydrog
G-A MISPAIR
A
G
9
A
N2
G
9
1_555
A
A
44
A
N3
A
44
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
A
C
36
A
N3
C
36
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
A
C
36
A
O2
C
36
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
A
C
36
A
N4
C
36
1_555
hydrog
TYPE_4_PAIR
A
G
11
A
N2
G
11
1_555
A
G
30
A
N3
G
30
1_555
hydrog
TYPE_4_PAIR
A
G
11
A
N3
G
11
1_555
A
G
30
A
N2
G
30
1_555
hydrog
G-G MISPAIR
A
G
11
A
N1
G
11
1_555
A
G
34
A
O6
G
34
1_555
hydrog
HOOGSTEEN
A
U
12
A
N3
U
12
1_555
A
A
33
A
N7
A
33
1_555
hydrog
HOOGSTEEN
A
U
12
A
O4
U
12
1_555
A
A
33
A
N6
A
33
1_555
hydrog
WATSON-CRICK
A
G
13
A
N1
G
13
1_555
A
C
26
A
N3
C
26
1_555
hydrog
WATSON-CRICK
A
G
13
A
N2
G
13
1_555
A
C
26
A
O2
C
26
1_555
hydrog
WATSON-CRICK
A
G
13
A
O6
G
13
1_555
A
C
26
A
N4
C
26
1_555
hydrog
G-U MISPAIR
A
G
13
A
N2
G
13
1_555
A
U
59
A
O2
U
59
1_555
hydrog
WATSON-CRICK
A
C
14
A
N3
C
14
1_555
A
G
25
A
N1
G
25
1_555
hydrog
WATSON-CRICK
A
C
14
A
N4
C
14
1_555
A
G
25
A
O6
G
25
1_555
hydrog
WATSON-CRICK
A
C
14
A
O2
C
14
1_555
A
G
25
A
N2
G
25
1_555
hydrog
TYPE_28_PAIR
A
U
15
A
N3
U
15
1_555
A
G
24
A
O6
G
24
1_555
hydrog
TYPE_28_PAIR
A
U
15
A
O2
U
15
1_555
A
G
24
A
N1
G
24
1_555
hydrog
WATSON-CRICK
A
U
16
A
N3
U
16
1_555
A
A
23
A
N1
A
23
1_555
hydrog
WATSON-CRICK
A
U
16
A
O4
U
16
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
G
17
A
N1
G
17
1_555
A
C
22
A
N3
C
22
1_555
hydrog
WATSON-CRICK
A
G
17
A
N2
G
17
1_555
A
C
22
A
O2
C
22
1_555
hydrog
WATSON-CRICK
A
G
17
A
O6
G
17
1_555
A
C
22
A
N4
C
22
1_555
hydrog
HOOGSTEEN
A
U
19
A
N3
U
19
1_555
A
A
21
A
N7
A
21
1_555
hydrog
HOOGSTEEN
A
U
19
A
O4
U
19
1_555
A
A
21
A
N6
A
21
1_555
hydrog
G-A MISPAIR
A
G
25
A
N2
G
25
1_555
A
A
57
A
N1
A
57
1_555
hydrog
REVERSED HOOGSTEEN
A
U
27
A
N3
U
27
1_555
A
A
31
A
N7
A
31
1_555
hydrog
REVERSED HOOGSTEEN
A
U
27
A
O2
U
27
1_555
A
A
31
A
N6
A
31
1_555
hydrog
TYPE_11_PAIR
A
G
42
A
N2
G
42
1_555
A
A
72
A
N7
A
72
1_555
hydrog
TYPE_11_PAIR
A
G
42
A
N3
G
42
1_555
A
A
72
A
N6
A
72
1_555
hydrog
TYPE_5_PAIR
A
A
43
A
N1
A
43
1_555
A
A
68
A
N6
A
68
1_555
hydrog
TYPE_5_PAIR
A
A
43
A
N6
A
43
1_555
A
A
68
A
N7
A
68
1_555
hydrog
TYPE_11_PAIR
A
A
44
A
N6
A
44
1_555
A
G
71
A
N3
G
71
1_555
hydrog
TYPE_11_PAIR
A
A
44
A
N7
A
44
1_555
A
G
71
A
N2
G
71
1_555
hydrog
WATSON-CRICK
A
C
45
A
N3
C
45
1_555
A
G
70
A
N1
G
70
1_555
hydrog
WATSON-CRICK
A
C
45
A
N4
C
45
1_555
A
G
70
A
O6
G
70
1_555
hydrog
WATSON-CRICK
A
C
45
A
O2
C
45
1_555
A
G
70
A
N2
G
70
1_555
hydrog
WATSON-CRICK
A
C
46
A
N3
C
46
1_555
A
G
69
A
N1
G
69
1_555
hydrog
WATSON-CRICK
A
C
46
A
N4
C
46
1_555
A
G
69
A
O6
G
69
1_555
hydrog
WATSON-CRICK
A
C
46
A
O2
C
46
1_555
A
G
69
A
N2
G
69
1_555
hydrog
WATSON-CRICK
A
U
47
A
N3
U
47
1_555
A
A
68
A
N1
A
68
1_555
hydrog
WATSON-CRICK
A
U
47
A
O4
U
47
1_555
A
A
68
A
N6
A
68
1_555
hydrog
TYPE_6_PAIR
A
G
48
A
N1
G
48
1_555
A
G
66
A
O6
G
66
1_555
hydrog
TYPE_6_PAIR
A
G
48
A
N2
G
48
1_555
A
G
66
A
N7
G
66
1_555
hydrog
A-C MISPAIR
A
A
49
A
N6
A
49
1_555
A
C
65
A
O2
C
65
1_555
hydrog
WATSON-CRICK
A
C
51
A
N3
C
51
1_555
A
G
64
A
N1
G
64
1_555
hydrog
WATSON-CRICK
A
C
51
A
N4
C
51
1_555
A
G
64
A
O6
G
64
1_555
hydrog
WATSON-CRICK
A
C
51
A
O2
C
51
1_555
A
G
64
A
N2
G
64
1_555
hydrog
WATSON-CRICK
A
A
52
A
N1
A
52
1_555
A
U
63
A
N3
U
63
1_555
hydrog
WATSON-CRICK
A
A
52
A
N6
A
52
1_555
A
U
63
A
O4
U
63
1_555
hydrog
WATSON-CRICK
A
G
53
A
N1
G
53
1_555
A
C
62
A
N3
C
62
1_555
hydrog
WATSON-CRICK
A
G
53
A
N2
G
53
1_555
A
C
62
A
O2
C
62
1_555
hydrog
WATSON-CRICK
A
G
53
A
O6
G
53
1_555
A
C
62
A
N4
C
62
1_555
hydrog
WATSON-CRICK
A
G
54
A
N1
G
54
1_555
A
C
61
A
N3
C
61
1_555
hydrog
WATSON-CRICK
A
G
54
A
N2
G
54
1_555
A
C
61
A
O2
C
61
1_555
hydrog
WATSON-CRICK
A
G
54
A
O6
G
54
1_555
A
C
61
A
N4
C
61
1_555
hydrog
G-C PAIR
B
G
3
B
N2
G
3
1_555
B
C
77
B
N3
C
77
1_555
hydrog
WATSON-CRICK
B
A
4
B
N1
A
4
1_555
B
U
76
B
N3
U
76
1_555
hydrog
WATSON-CRICK
B
A
4
B
N6
A
4
1_555
B
U
76
B
O4
U
76
1_555
hydrog
C-G PAIR
B
C
5
B
O2
C
5
1_555
B
G
75
B
N2
G
75
1_555
hydrog
WATSON-CRICK
B
C
6
B
N3
C
6
1_555
B
G
73
B
N1
G
73
1_555
hydrog
WATSON-CRICK
B
C
6
B
N4
C
6
1_555
B
G
73
B
O6
G
73
1_555
hydrog
WATSON-CRICK
B
C
6
B
O2
C
6
1_555
B
G
73
B
N2
G
73
1_555
hydrog
WATSON-CRICK
B
A
7
B
N1
A
7
1_555
B
U
39
B
N3
U
39
1_555
hydrog
WATSON-CRICK
B
A
7
B
N6
A
7
1_555
B
U
39
B
O4
U
39
1_555
hydrog
WATSON-CRICK
B
G
8
B
N1
G
8
1_555
B
C
38
B
N3
C
38
1_555
hydrog
WATSON-CRICK
B
G
8
B
N2
G
8
1_555
B
C
38
B
O2
C
38
1_555
hydrog
WATSON-CRICK
B
G
8
B
O6
G
8
1_555
B
C
38
B
N4
C
38
1_555
hydrog
G-A MISPAIR
B
G
8
B
N2
G
8
1_555
B
A
72
B
N3
A
72
1_555
hydrog
WATSON-CRICK
B
G
9
B
N1
G
9
1_555
B
C
37
B
N3
C
37
1_555
hydrog
WATSON-CRICK
B
G
9
B
N2
G
9
1_555
B
C
37
B
O2
C
37
1_555
hydrog
WATSON-CRICK
B
G
9
B
O6
G
9
1_555
B
C
37
B
N4
C
37
1_555
hydrog
G-A MISPAIR
B
G
9
B
N2
G
9
1_555
B
A
44
B
N3
A
44
1_555
hydrog
WATSON-CRICK
B
G
10
B
N1
G
10
1_555
B
C
36
B
N3
C
36
1_555
hydrog
WATSON-CRICK
B
G
10
B
N2
G
10
1_555
B
C
36
B
O2
C
36
1_555
hydrog
WATSON-CRICK
B
G
10
B
O6
G
10
1_555
B
C
36
B
N4
C
36
1_555
hydrog
TYPE_4_PAIR
B
G
11
B
N2
G
11
1_555
B
G
30
B
N3
G
30
1_555
hydrog
TYPE_4_PAIR
B
G
11
B
N3
G
11
1_555
B
G
30
B
N2
G
30
1_555
hydrog
G-G MISPAIR
B
G
11
B
N1
G
11
1_555
B
G
34
B
O6
G
34
1_555
hydrog
HOOGSTEEN
B
U
12
B
N3
U
12
1_555
B
A
33
B
N7
A
33
1_555
hydrog
HOOGSTEEN
B
U
12
B
O4
U
12
1_555
B
A
33
B
N6
A
33
1_555
hydrog
WATSON-CRICK
B
G
13
B
N1
G
13
1_555
B
C
26
B
N3
C
26
1_555
hydrog
WATSON-CRICK
B
G
13
B
N2
G
13
1_555
B
C
26
B
O2
C
26
1_555
hydrog
WATSON-CRICK
B
G
13
B
O6
G
13
1_555
B
C
26
B
N4
C
26
1_555
hydrog
G-U MISPAIR
B
G
13
B
N2
G
13
1_555
B
U
59
B
O2
U
59
1_555
hydrog
WATSON-CRICK
B
C
14
B
N3
C
14
1_555
B
G
25
B
N1
G
25
1_555
hydrog
WATSON-CRICK
B
C
14
B
N4
C
14
1_555
B
G
25
B
O6
G
25
1_555
hydrog
WATSON-CRICK
B
C
14
B
O2
C
14
1_555
B
G
25
B
N2
G
25
1_555
hydrog
TYPE_28_PAIR
B
U
15
B
N3
U
15
1_555
B
G
24
B
O6
G
24
1_555
hydrog
TYPE_28_PAIR
B
U
15
B
O2
U
15
1_555
B
G
24
B
N1
G
24
1_555
hydrog
WATSON-CRICK
B
U
16
B
N3
U
16
1_555
B
A
23
B
N1
A
23
1_555
hydrog
WATSON-CRICK
B
U
16
B
O4
U
16
1_555
B
A
23
B
N6
A
23
1_555
hydrog
WATSON-CRICK
B
G
17
B
N1
G
17
1_555
B
C
22
B
N3
C
22
1_555
hydrog
WATSON-CRICK
B
G
17
B
N2
G
17
1_555
B
C
22
B
O2
C
22
1_555
hydrog
WATSON-CRICK
B
G
17
B
O6
G
17
1_555
B
C
22
B
N4
C
22
1_555
hydrog
HOOGSTEEN
B
U
19
B
N3
U
19
1_555
B
A
21
B
N7
A
21
1_555
hydrog
HOOGSTEEN
B
U
19
B
O4
U
19
1_555
B
A
21
B
N6
A
21
1_555
hydrog
U-C MISPAIR
B
U
19
B
O2
U
19
1_555
B
C
22
B
N4
C
22
1_555
hydrog
G-A MISPAIR
B
G
25
B
N2
G
25
1_555
B
A
57
B
N1
A
57
1_555
hydrog
REVERSED HOOGSTEEN
B
U
27
B
N3
U
27
1_555
B
A
31
B
N7
A
31
1_555
hydrog
REVERSED HOOGSTEEN
B
U
27
B
O2
U
27
1_555
B
A
31
B
N6
A
31
1_555
hydrog
TYPE_11_PAIR
B
G
42
B
N2
G
42
1_555
B
A
72
B
N7
A
72
1_555
hydrog
TYPE_11_PAIR
B
G
42
B
N3
G
42
1_555
B
A
72
B
N6
A
72
1_555
hydrog
TYPE_5_PAIR
B
A
43
B
N1
A
43
1_555
B
A
68
B
N6
A
68
1_555
hydrog
TYPE_5_PAIR
B
A
43
B
N6
A
43
1_555
B
A
68
B
N7
A
68
1_555
hydrog
TYPE_11_PAIR
B
A
44
B
N6
A
44
1_555
B
G
71
B
N3
G
71
1_555
hydrog
TYPE_11_PAIR
B
A
44
B
N7
A
44
1_555
B
G
71
B
N2
G
71
1_555
hydrog
WATSON-CRICK
B
C
45
B
N3
C
45
1_555
B
G
70
B
N1
G
70
1_555
hydrog
WATSON-CRICK
B
C
45
B
N4
C
45
1_555
B
G
70
B
O6
G
70
1_555
hydrog
WATSON-CRICK
B
C
45
B
O2
C
45
1_555
B
G
70
B
N2
G
70
1_555
hydrog
WATSON-CRICK
B
C
46
B
N3
C
46
1_555
B
G
69
B
N1
G
69
1_555
hydrog
WATSON-CRICK
B
C
46
B
N4
C
46
1_555
B
G
69
B
O6
G
69
1_555
hydrog
WATSON-CRICK
B
C
46
B
O2
C
46
1_555
B
G
69
B
N2
G
69
1_555
hydrog
WATSON-CRICK
B
U
47
B
N3
U
47
1_555
B
A
68
B
N1
A
68
1_555
hydrog
WATSON-CRICK
B
U
47
B
O4
U
47
1_555
B
A
68
B
N6
A
68
1_555
hydrog
TYPE_6_PAIR
B
G
48
B
N1
G
48
1_555
B
G
66
B
O6
G
66
1_555
hydrog
TYPE_6_PAIR
B
G
48
B
N2
G
48
1_555
B
G
66
B
N7
G
66
1_555
hydrog
A-C MISPAIR
B
A
49
B
N6
A
49
1_555
B
C
65
B
O2
C
65
1_555
hydrog
WATSON-CRICK
B
C
51
B
N3
C
51
1_555
B
G
64
B
N1
G
64
1_555
hydrog
WATSON-CRICK
B
C
51
B
N4
C
51
1_555
B
G
64
B
O6
G
64
1_555
hydrog
WATSON-CRICK
B
C
51
B
O2
C
51
1_555
B
G
64
B
N2
G
64
1_555
hydrog
WATSON-CRICK
B
A
52
B
N1
A
52
1_555
B
U
63
B
N3
U
63
1_555
hydrog
WATSON-CRICK
B
A
52
B
N6
A
52
1_555
B
U
63
B
O4
U
63
1_555
hydrog
WATSON-CRICK
B
G
53
B
N1
G
53
1_555
B
C
62
B
N3
C
62
1_555
hydrog
WATSON-CRICK
B
G
53
B
N2
G
53
1_555
B
C
62
B
O2
C
62
1_555
hydrog
WATSON-CRICK
B
G
53
B
O6
G
53
1_555
B
C
62
B
N4
C
62
1_555
hydrog
WATSON-CRICK
B
G
54
B
N1
G
54
1_555
B
C
61
B
N3
C
61
1_555
hydrog
WATSON-CRICK
B
G
54
B
N2
G
54
1_555
B
C
61
B
O2
C
61
1_555
hydrog
WATSON-CRICK
B
G
54
B
O6
G
54
1_555
B
C
61
B
N4
C
61
1_555
RNA
RNA, riboswitch, TPP, thiamine analogues, antibiotics, Arabidopsis thaliana, eukaryote
3D2G
PDB
1
1
3D2G
GGGACCAGGGGUGCUUGUUCACAGGCUGAGAAAGUCCCUUUGAACCUGAACAGGGUAAUGCCUGCGCAGGGAGUGUC
1
77
3D2G
1
77
3D2G
A
1
1
77
1
77
3D2G
1
77
3D2G
B
1
1
77
BINDING SITE FOR RESIDUE MG B 78
B
MG
78
Software
6
BINDING SITE FOR RESIDUE MG B 79
B
MG
79
Software
6
BINDING SITE FOR RESIDUE MG A 78
A
MG
78
Software
5
BINDING SITE FOR RESIDUE MG A 79
A
MG
79
Software
6
BINDING SITE FOR RESIDUE MG A 80
A
MG
80
Software
6
BINDING SITE FOR RESIDUE MG B 80
B
MG
80
Software
6
BINDING SITE FOR RESIDUE MG A 82
A
MG
82
Software
7
BINDING SITE FOR RESIDUE MG A 81
A
MG
81
Software
6
BINDING SITE FOR RESIDUE MG B 81
B
MG
81
Software
3
BINDING SITE FOR RESIDUE MG B 82
B
MG
82
Software
6
BINDING SITE FOR RESIDUE TPP A 83
A
TPP
83
Software
17
BINDING SITE FOR RESIDUE TPP B 83
B
TPP
83
Software
18
B
G
48
B
G
48
6
1_555
B
G
66
B
G
66
6
1_555
B
TPP
83
N
TPP
6
1_555
B
HOH
84
P
HOH
6
1_555
B
HOH
85
P
HOH
6
1_555
B
HOH
86
P
HOH
6
1_555
A
HOH
84
O
HOH
6
1_555
B
C
51
B
C
51
6
1_555
B
A
52
B
A
52
6
1_555
B
HOH
87
P
HOH
6
1_555
B
HOH
88
P
HOH
6
1_555
B
HOH
89
P
HOH
6
1_555
A
TPP
83
H
TPP
5
1_555
A
HOH
89
O
HOH
5
1_555
A
HOH
90
O
HOH
5
1_555
A
HOH
91
O
HOH
5
1_555
A
HOH
92
O
HOH
5
1_555
A
G
48
A
G
48
6
1_555
A
G
66
A
G
66
6
1_555
A
TPP
83
H
TPP
6
1_555
A
HOH
93
O
HOH
6
1_555
A
HOH
94
O
HOH
6
1_555
A
HOH
95
O
HOH
6
1_555
A
C
51
A
C
51
6
1_555
A
A
52
A
A
52
6
1_555
A
HOH
96
O
HOH
6
1_555
A
HOH
97
O
HOH
6
1_555
A
HOH
98
O
HOH
6
1_555
B
HOH
90
P
HOH
6
1_555
B
U
63
B
U
63
6
1_555
B
TPP
83
N
TPP
6
1_555
B
HOH
91
P
HOH
6
1_555
B
HOH
92
P
HOH
6
1_555
B
HOH
93
P
HOH
6
1_555
B
HOH
94
P
HOH
6
1_555
A
G
42
A
G
42
7
1_555
A
C
65
A
C
65
7
2_555
A
C
67
A
C
67
7
2_555
A
HOH
85
O
HOH
7
1_555
A
HOH
86
O
HOH
7
1_555
A
HOH
87
O
HOH
7
1_555
A
HOH
88
O
HOH
7
1_555
A
A
29
A
A
29
6
1_555
A
HOH
99
O
HOH
6
1_555
A
HOH
100
O
HOH
6
1_555
A
HOH
101
O
HOH
6
1_555
A
HOH
132
O
HOH
6
1_555
A
HOH
158
O
HOH
6
1_555
B
A
29
B
A
29
3
1_555
B
HOH
102
P
HOH
3
1_555
B
HOH
104
P
HOH
3
1_555
B
C
67
B
C
67
6
1_555
B
C
67
B
C
67
6
2_545
B
HOH
95
P
HOH
6
2_545
B
HOH
95
P
HOH
6
1_555
B
HOH
96
P
HOH
6
1_555
B
HOH
96
P
HOH
6
2_545
A
G
11
A
G
11
17
1_555
A
G
28
A
G
28
17
1_555
A
G
30
A
G
30
17
1_555
A
A
31
A
A
31
17
1_555
A
C
45
A
C
45
17
1_555
A
G
60
A
G
60
17
1_555
A
C
61
A
C
61
17
1_555
A
C
65
A
C
65
17
1_555
A
G
66
A
G
66
17
1_555
A
MG
78
C
MG
17
1_555
A
MG
79
D
MG
17
1_555
A
HOH
89
O
HOH
17
1_555
A
HOH
91
O
HOH
17
1_555
A
HOH
92
O
HOH
17
1_555
A
HOH
93
O
HOH
17
1_555
A
HOH
95
O
HOH
17
1_555
A
HOH
119
O
HOH
17
1_555
B
G
11
B
G
11
18
1_555
B
U
12
B
U
12
18
1_555
B
G
28
B
G
28
18
1_555
B
G
30
B
G
30
18
1_555
B
A
31
B
A
31
18
1_555
B
C
45
B
C
45
18
1_555
B
G
60
B
G
60
18
1_555
B
C
61
B
C
61
18
1_555
B
C
65
B
C
65
18
1_555
B
G
66
B
G
66
18
1_555
B
MG
78
I
MG
18
1_555
B
MG
80
K
MG
18
1_555
B
HOH
84
P
HOH
18
1_555
B
HOH
85
P
HOH
18
1_555
B
HOH
93
P
HOH
18
1_555
B
HOH
94
P
HOH
18
1_555
B
HOH
98
P
HOH
18
1_555
B
HOH
112
P
HOH
18
1_555
18
P 21 21 2