0.022441 0.000000 0.001690 0.000000 0.018123 0.000000 0.000000 0.000000 0.021284 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 94.310 90.000 44.562 55.179 47.116 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of Domain of Unknown Function with an Immunoglobulin-like Beta-sandwich Fold (YP_001297618.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution 10.2210/pdb3d33/pdb pdb_00003d33 100 1 Flat mirror (vertical focusing) CCD 2008-04-11 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) SINGLE WAVELENGTH M x-ray 1 1.0 BL11-1 SSRL SYNCHROTRON SSRL BEAMLINE BL11-1 11948.939 Domain of Unknown Function with an Immunoglobulin-like Beta-sandwich Fold 2 man polymer 18.015 water 283 nat water no yes GANTTETPVKDVELDGRWDDPIRSAATNCPITVFTDGYLLTLKNASPDRD(MSE)TIRITD(MSE)AKGGVVYENDIPEV QSAYITISIANFPAEEYKLEITGTPSGHLTGYFTKE GANTTETPVKDVELDGRWDDPIRSAATNCPITVFTDGYLLTLKNASPDRDMTIRITDMAKGGVVYENDIPEVQSAYITIS IANFPAEEYKLEITGTPSGHLTGYFTKE A,B 390198 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample YP_001297618.1, BVU_0276 435590 Bacteroides vulgatus ATCC 8482 Escherichia Coli HK100 Plasmid SpeedET 1 2.42 49.11 VAPOR DIFFUSION, SITTING DROP 5.9 0.2000M MgFormate, 20.0000% PEG-3350, No Buffer pH 5.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative pdbx_struct_assembly_auth_evidence software software struct_conn database_2 struct_ref_seq_dif repository Initial release Advisory Version format compliance Author supporting evidence Refinement description Data collection Derived calculations Refinement description Database references 1 0 2008-05-27 1 1 2011-07-13 1 2 2017-10-25 1 3 2019-07-24 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Y RCSB Y RCSB 2008-05-09 REL REL HOH water THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS RESIDUES 28-134 OF THE FULL LENGTH PROTEIN. THIS REMOVED THE PUTATIVE SIGNAL PEPTIDE WHOSE PREDICTED CLEAVAGE SITE IS BETWEEN RESIDUES 28-29. HOH 1 2 HOH HOH 135 A HOH 3 2 HOH HOH 136 A HOH 5 2 HOH HOH 137 A HOH 13 2 HOH HOH 138 A HOH 17 2 HOH HOH 139 A HOH 18 2 HOH HOH 140 A HOH 21 2 HOH HOH 141 A HOH 23 2 HOH HOH 142 A HOH 24 2 HOH HOH 143 A HOH 25 2 HOH HOH 144 A HOH 26 2 HOH HOH 145 A HOH 28 2 HOH HOH 146 A HOH 30 2 HOH HOH 147 A HOH 32 2 HOH HOH 148 A HOH 33 2 HOH HOH 149 A HOH 35 2 HOH HOH 150 A HOH 36 2 HOH HOH 151 A HOH 41 2 HOH HOH 152 A HOH 46 2 HOH HOH 153 A HOH 47 2 HOH HOH 154 A HOH 48 2 HOH HOH 155 A HOH 49 2 HOH HOH 156 A HOH 53 2 HOH HOH 157 A HOH 54 2 HOH HOH 158 A HOH 55 2 HOH HOH 159 A HOH 56 2 HOH HOH 160 A HOH 60 2 HOH HOH 161 A HOH 61 2 HOH HOH 162 A HOH 62 2 HOH HOH 163 A HOH 63 2 HOH HOH 164 A HOH 64 2 HOH HOH 165 A HOH 65 2 HOH HOH 166 A HOH 66 2 HOH HOH 167 A HOH 67 2 HOH HOH 168 A HOH 68 2 HOH HOH 169 A HOH 69 2 HOH HOH 170 A HOH 75 2 HOH HOH 171 A HOH 76 2 HOH HOH 172 A HOH 82 2 HOH HOH 173 A HOH 84 2 HOH HOH 174 A HOH 88 2 HOH HOH 175 A HOH 89 2 HOH HOH 176 A HOH 90 2 HOH HOH 177 A HOH 93 2 HOH HOH 178 A HOH 95 2 HOH HOH 179 A HOH 97 2 HOH HOH 180 A HOH 101 2 HOH HOH 181 A HOH 102 2 HOH HOH 182 A HOH 103 2 HOH HOH 183 A HOH 104 2 HOH HOH 184 A HOH 106 2 HOH HOH 185 A HOH 109 2 HOH HOH 186 A HOH 110 2 HOH HOH 187 A HOH 111 2 HOH HOH 188 A HOH 116 2 HOH HOH 189 A HOH 117 2 HOH HOH 190 A HOH 118 2 HOH HOH 191 A HOH 119 2 HOH HOH 192 A HOH 121 2 HOH HOH 193 A HOH 122 2 HOH HOH 194 A HOH 124 2 HOH HOH 195 A HOH 126 2 HOH HOH 196 A HOH 127 2 HOH HOH 197 A HOH 128 2 HOH HOH 198 A HOH 129 2 HOH HOH 199 A HOH 132 2 HOH HOH 200 A HOH 133 2 HOH HOH 201 A HOH 135 2 HOH HOH 202 A HOH 136 2 HOH HOH 203 A HOH 146 2 HOH HOH 204 A HOH 150 2 HOH HOH 205 A HOH 151 2 HOH HOH 206 A HOH 153 2 HOH HOH 207 A HOH 155 2 HOH HOH 208 A HOH 158 2 HOH HOH 209 A HOH 159 2 HOH HOH 210 A HOH 163 2 HOH HOH 211 A HOH 164 2 HOH HOH 212 A HOH 166 2 HOH HOH 213 A HOH 167 2 HOH HOH 214 A HOH 170 2 HOH HOH 215 A HOH 172 2 HOH HOH 216 A HOH 176 2 HOH HOH 217 A HOH 179 2 HOH HOH 218 A HOH 181 2 HOH HOH 219 A HOH 183 2 HOH HOH 220 A HOH 187 2 HOH HOH 221 A HOH 188 2 HOH HOH 222 A HOH 190 2 HOH HOH 223 A HOH 191 2 HOH HOH 224 A HOH 194 2 HOH HOH 225 A HOH 196 2 HOH HOH 226 A HOH 198 2 HOH HOH 227 A HOH 204 2 HOH HOH 228 A HOH 205 2 HOH HOH 229 A HOH 209 2 HOH HOH 230 A HOH 212 2 HOH HOH 231 A HOH 215 2 HOH HOH 232 A HOH 216 2 HOH HOH 233 A HOH 224 2 HOH HOH 234 A HOH 225 2 HOH HOH 235 A HOH 226 2 HOH HOH 236 A HOH 227 2 HOH HOH 237 A HOH 228 2 HOH HOH 238 A HOH 229 2 HOH HOH 239 A HOH 230 2 HOH HOH 240 A HOH 231 2 HOH HOH 241 A HOH 237 2 HOH HOH 242 A HOH 238 2 HOH HOH 243 A HOH 240 2 HOH HOH 244 A HOH 241 2 HOH HOH 245 A HOH 242 2 HOH HOH 246 A HOH 244 2 HOH HOH 247 A HOH 246 2 HOH HOH 248 A HOH 247 2 HOH HOH 249 A HOH 248 2 HOH HOH 250 A HOH 255 2 HOH HOH 251 A HOH 261 2 HOH HOH 252 A HOH 262 2 HOH HOH 253 A HOH 264 2 HOH HOH 254 A HOH 265 2 HOH HOH 255 A HOH 267 2 HOH HOH 256 A HOH 269 2 HOH HOH 257 A HOH 270 2 HOH HOH 258 A HOH 272 2 HOH HOH 259 A HOH 273 2 HOH HOH 260 A HOH 274 2 HOH HOH 261 A HOH 276 2 HOH HOH 262 A HOH 280 2 HOH HOH 263 A HOH 281 2 HOH HOH 264 A HOH 2 2 HOH HOH 135 B HOH 4 2 HOH HOH 136 B HOH 6 2 HOH HOH 137 B HOH 7 2 HOH HOH 138 B HOH 8 2 HOH HOH 139 B HOH 9 2 HOH HOH 140 B HOH 10 2 HOH HOH 141 B HOH 11 2 HOH HOH 142 B HOH 12 2 HOH HOH 143 B HOH 14 2 HOH HOH 144 B HOH 15 2 HOH HOH 145 B HOH 16 2 HOH HOH 146 B HOH 19 2 HOH HOH 147 B HOH 20 2 HOH HOH 148 B HOH 22 2 HOH HOH 149 B HOH 27 2 HOH HOH 150 B HOH 29 2 HOH HOH 151 B HOH 31 2 HOH HOH 152 B HOH 34 2 HOH HOH 153 B HOH 37 2 HOH HOH 154 B HOH 38 2 HOH HOH 155 B HOH 39 2 HOH HOH 156 B HOH 40 2 HOH HOH 157 B HOH 42 2 HOH HOH 158 B HOH 43 2 HOH HOH 159 B HOH 44 2 HOH HOH 160 B HOH 45 2 HOH HOH 161 B HOH 50 2 HOH HOH 162 B HOH 51 2 HOH HOH 163 B HOH 52 2 HOH HOH 164 B HOH 57 2 HOH HOH 165 B HOH 58 2 HOH HOH 166 B HOH 59 2 HOH HOH 167 B HOH 70 2 HOH HOH 168 B HOH 71 2 HOH HOH 169 B HOH 72 2 HOH HOH 170 B HOH 73 2 HOH HOH 171 B HOH 74 2 HOH HOH 172 B HOH 77 2 HOH HOH 173 B HOH 78 2 HOH HOH 174 B HOH 79 2 HOH HOH 175 B HOH 80 2 HOH HOH 176 B HOH 81 2 HOH HOH 177 B HOH 83 2 HOH HOH 178 B HOH 85 2 HOH HOH 179 B HOH 86 2 HOH HOH 180 B HOH 87 2 HOH HOH 181 B HOH 91 2 HOH HOH 182 B HOH 92 2 HOH HOH 183 B HOH 94 2 HOH HOH 184 B HOH 96 2 HOH HOH 185 B HOH 98 2 HOH HOH 186 B HOH 99 2 HOH HOH 187 B HOH 100 2 HOH HOH 188 B HOH 105 2 HOH HOH 189 B HOH 107 2 HOH HOH 190 B HOH 108 2 HOH HOH 191 B HOH 112 2 HOH HOH 192 B HOH 113 2 HOH HOH 193 B HOH 114 2 HOH HOH 194 B HOH 115 2 HOH HOH 195 B HOH 120 2 HOH HOH 196 B HOH 123 2 HOH HOH 197 B HOH 125 2 HOH HOH 198 B HOH 130 2 HOH HOH 199 B HOH 131 2 HOH HOH 200 B HOH 134 2 HOH HOH 201 B HOH 137 2 HOH HOH 202 B HOH 138 2 HOH HOH 203 B HOH 139 2 HOH HOH 204 B HOH 140 2 HOH HOH 205 B HOH 141 2 HOH HOH 206 B HOH 142 2 HOH HOH 207 B HOH 143 2 HOH HOH 208 B HOH 144 2 HOH HOH 209 B HOH 145 2 HOH HOH 210 B HOH 147 2 HOH HOH 211 B HOH 148 2 HOH HOH 212 B HOH 149 2 HOH HOH 213 B HOH 152 2 HOH HOH 214 B HOH 154 2 HOH HOH 215 B HOH 156 2 HOH HOH 216 B HOH 157 2 HOH HOH 217 B HOH 160 2 HOH HOH 218 B HOH 161 2 HOH HOH 219 B HOH 162 2 HOH HOH 220 B HOH 165 2 HOH HOH 221 B HOH 168 2 HOH HOH 222 B HOH 169 2 HOH HOH 223 B HOH 171 2 HOH HOH 224 B HOH 173 2 HOH HOH 225 B HOH 174 2 HOH HOH 226 B HOH 175 2 HOH HOH 227 B HOH 177 2 HOH HOH 228 B HOH 178 2 HOH HOH 229 B HOH 180 2 HOH HOH 230 B HOH 182 2 HOH HOH 231 B HOH 184 2 HOH HOH 232 B HOH 185 2 HOH HOH 233 B HOH 186 2 HOH HOH 234 B HOH 189 2 HOH HOH 235 B HOH 192 2 HOH HOH 236 B HOH 193 2 HOH HOH 237 B HOH 195 2 HOH HOH 238 B HOH 197 2 HOH HOH 239 B HOH 199 2 HOH HOH 240 B HOH 200 2 HOH HOH 241 B HOH 201 2 HOH HOH 242 B HOH 202 2 HOH HOH 243 B HOH 203 2 HOH HOH 244 B HOH 206 2 HOH HOH 245 B HOH 207 2 HOH HOH 246 B HOH 208 2 HOH HOH 247 B HOH 210 2 HOH HOH 248 B HOH 211 2 HOH HOH 249 B HOH 213 2 HOH HOH 250 B HOH 214 2 HOH HOH 251 B HOH 217 2 HOH HOH 252 B HOH 218 2 HOH HOH 253 B HOH 219 2 HOH HOH 254 B HOH 220 2 HOH HOH 255 B HOH 221 2 HOH HOH 256 B HOH 222 2 HOH HOH 257 B HOH 223 2 HOH HOH 258 B HOH 232 2 HOH HOH 259 B HOH 233 2 HOH HOH 260 B HOH 234 2 HOH HOH 261 B HOH 235 2 HOH HOH 262 B HOH 236 2 HOH HOH 263 B HOH 239 2 HOH HOH 264 B HOH 243 2 HOH HOH 265 B HOH 245 2 HOH HOH 266 B HOH 249 2 HOH HOH 267 B HOH 250 2 HOH HOH 268 B HOH 251 2 HOH HOH 269 B HOH 252 2 HOH HOH 270 B HOH 253 2 HOH HOH 271 B HOH 254 2 HOH HOH 272 B HOH 256 2 HOH HOH 273 B HOH 257 2 HOH HOH 274 B HOH 258 2 HOH HOH 275 B HOH 259 2 HOH HOH 276 B HOH 260 2 HOH HOH 277 B HOH 263 2 HOH HOH 278 B HOH 266 2 HOH HOH 279 B HOH 268 2 HOH HOH 280 B HOH 271 2 HOH HOH 281 B HOH 275 2 HOH HOH 282 B HOH 277 2 HOH HOH 283 B HOH 278 2 HOH HOH 284 B HOH 279 2 HOH HOH 285 B HOH 282 2 HOH HOH 286 B HOH 283 2 HOH HOH 287 B n 1 27 A n 2 28 A n 3 29 A n 4 30 A n 5 31 A n 6 32 A n 7 33 A PRO 34 n 8 PRO 34 A VAL 35 n 9 VAL 35 A LYS 36 n 10 LYS 36 A ASP 37 n 11 ASP 37 A VAL 38 n 12 VAL 38 A GLU 39 n 13 GLU 39 A LEU 40 n 14 LEU 40 A ASP 41 n 15 ASP 41 A GLY 42 n 16 GLY 42 A ARG 43 n 17 ARG 43 A TRP 44 n 18 TRP 44 A ASP 45 n 19 ASP 45 A ASP 46 n 20 ASP 46 A n 21 47 A n 22 48 A n 23 49 A n 24 50 A n 25 51 A n 26 52 A n 27 53 A ASN 54 n 28 ASN 54 A CYS 55 n 29 CYS 55 A PRO 56 n 30 PRO 56 A ILE 57 n 31 ILE 57 A THR 58 n 32 THR 58 A VAL 59 n 33 VAL 59 A PHE 60 n 34 PHE 60 A THR 61 n 35 THR 61 A ASP 62 n 36 ASP 62 A GLY 63 n 37 GLY 63 A TYR 64 n 38 TYR 64 A LEU 65 n 39 LEU 65 A LEU 66 n 40 LEU 66 A THR 67 n 41 THR 67 A LEU 68 n 42 LEU 68 A LYS 69 n 43 LYS 69 A ASN 70 n 44 ASN 70 A ALA 71 n 45 ALA 71 A SER 72 n 46 SER 72 A PRO 73 n 47 PRO 73 A ASP 74 n 48 ASP 74 A ARG 75 n 49 ARG 75 A ASP 76 n 50 ASP 76 A MSE 77 n 51 MSE 77 A THR 78 n 52 THR 78 A ILE 79 n 53 ILE 79 A ARG 80 n 54 ARG 80 A ILE 81 n 55 ILE 81 A THR 82 n 56 THR 82 A ASP 83 n 57 ASP 83 A MSE 84 n 58 MSE 84 A ALA 85 n 59 ALA 85 A LYS 86 n 60 LYS 86 A GLY 87 n 61 GLY 87 A GLY 88 n 62 GLY 88 A VAL 89 n 63 VAL 89 A VAL 90 n 64 VAL 90 A TYR 91 n 65 TYR 91 A GLU 92 n 66 GLU 92 A ASN 93 n 67 ASN 93 A ASP 94 n 68 ASP 94 A ILE 95 n 69 ILE 95 A PRO 96 n 70 PRO 96 A GLU 97 n 71 GLU 97 A VAL 98 n 72 VAL 98 A GLN 99 n 73 GLN 99 A SER 100 n 74 SER 100 A ALA 101 n 75 ALA 101 A TYR 102 n 76 TYR 102 A ILE 103 n 77 ILE 103 A THR 104 n 78 THR 104 A ILE 105 n 79 ILE 105 A SER 106 n 80 SER 106 A ILE 107 n 81 ILE 107 A ALA 108 n 82 ALA 108 A ASN 109 n 83 ASN 109 A PHE 110 n 84 PHE 110 A PRO 111 n 85 PRO 111 A ALA 112 n 86 ALA 112 A GLU 113 n 87 GLU 113 A GLU 114 n 88 GLU 114 A TYR 115 n 89 TYR 115 A LYS 116 n 90 LYS 116 A LEU 117 n 91 LEU 117 A GLU 118 n 92 GLU 118 A ILE 119 n 93 ILE 119 A THR 120 n 94 THR 120 A GLY 121 n 95 GLY 121 A THR 122 n 96 THR 122 A PRO 123 n 97 PRO 123 A SER 124 n 98 SER 124 A GLY 125 n 99 GLY 125 A HIS 126 n 100 HIS 126 A LEU 127 n 101 LEU 127 A THR 128 n 102 THR 128 A GLY 129 n 103 GLY 129 A TYR 130 n 104 TYR 130 A PHE 131 n 105 PHE 131 A THR 132 n 106 THR 132 A LYS 133 n 107 LYS 133 A GLU 134 n 108 GLU 134 A n 1 27 B n 2 28 B n 3 29 B n 4 30 B n 5 31 B n 6 32 B n 7 33 B PRO 34 n 8 PRO 34 B VAL 35 n 9 VAL 35 B LYS 36 n 10 LYS 36 B ASP 37 n 11 ASP 37 B VAL 38 n 12 VAL 38 B GLU 39 n 13 GLU 39 B LEU 40 n 14 LEU 40 B ASP 41 n 15 ASP 41 B GLY 42 n 16 GLY 42 B ARG 43 n 17 ARG 43 B TRP 44 n 18 TRP 44 B ASP 45 n 19 ASP 45 B n 20 46 B n 21 47 B n 22 48 B n 23 49 B n 24 50 B n 25 51 B n 26 52 B n 27 53 B ASN 54 n 28 ASN 54 B CYS 55 n 29 CYS 55 B PRO 56 n 30 PRO 56 B ILE 57 n 31 ILE 57 B THR 58 n 32 THR 58 B VAL 59 n 33 VAL 59 B PHE 60 n 34 PHE 60 B THR 61 n 35 THR 61 B ASP 62 n 36 ASP 62 B GLY 63 n 37 GLY 63 B TYR 64 n 38 TYR 64 B LEU 65 n 39 LEU 65 B LEU 66 n 40 LEU 66 B THR 67 n 41 THR 67 B LEU 68 n 42 LEU 68 B LYS 69 n 43 LYS 69 B ASN 70 n 44 ASN 70 B ALA 71 n 45 ALA 71 B SER 72 n 46 SER 72 B PRO 73 n 47 PRO 73 B ASP 74 n 48 ASP 74 B ARG 75 n 49 ARG 75 B ASP 76 n 50 ASP 76 B MSE 77 n 51 MSE 77 B THR 78 n 52 THR 78 B ILE 79 n 53 ILE 79 B ARG 80 n 54 ARG 80 B ILE 81 n 55 ILE 81 B THR 82 n 56 THR 82 B ASP 83 n 57 ASP 83 B MSE 84 n 58 MSE 84 B ALA 85 n 59 ALA 85 B LYS 86 n 60 LYS 86 B GLY 87 n 61 GLY 87 B GLY 88 n 62 GLY 88 B VAL 89 n 63 VAL 89 B VAL 90 n 64 VAL 90 B TYR 91 n 65 TYR 91 B GLU 92 n 66 GLU 92 B ASN 93 n 67 ASN 93 B ASP 94 n 68 ASP 94 B ILE 95 n 69 ILE 95 B PRO 96 n 70 PRO 96 B GLU 97 n 71 GLU 97 B VAL 98 n 72 VAL 98 B GLN 99 n 73 GLN 99 B SER 100 n 74 SER 100 B ALA 101 n 75 ALA 101 B TYR 102 n 76 TYR 102 B ILE 103 n 77 ILE 103 B THR 104 n 78 THR 104 B ILE 105 n 79 ILE 105 B SER 106 n 80 SER 106 B ILE 107 n 81 ILE 107 B ALA 108 n 82 ALA 108 B ASN 109 n 83 ASN 109 B PHE 110 n 84 PHE 110 B PRO 111 n 85 PRO 111 B ALA 112 n 86 ALA 112 B GLU 113 n 87 GLU 113 B GLU 114 n 88 GLU 114 B TYR 115 n 89 TYR 115 B LYS 116 n 90 LYS 116 B LEU 117 n 91 LEU 117 B GLU 118 n 92 GLU 118 B ILE 119 n 93 ILE 119 B THR 120 n 94 THR 120 B GLY 121 n 95 GLY 121 B THR 122 n 96 THR 122 B PRO 123 n 97 PRO 123 B SER 124 n 98 SER 124 B GLY 125 n 99 GLY 125 B HIS 126 n 100 HIS 126 B LEU 127 n 101 LEU 127 B THR 128 n 102 THR 128 B GLY 129 n 103 GLY 129 B TYR 130 n 104 TYR 130 B PHE 131 n 105 PHE 131 B THR 132 n 106 THR 132 B LYS 133 n 107 LYS 133 B GLU 134 n 108 GLU 134 B 1.1627 0.3124 0.0569 1.7736 0.0921 2.3912 0.0150 -0.0750 0.0047 0.0108 -0.0250 0.0761 -0.0036 0.0341 0.0100 -0.0637 0.0074 -0.0065 -0.0470 -0.0074 -0.0435 refined 9.2825 11.7246 10.8684 X-RAY DIFFRACTION 1.2694 -0.6028 -0.4287 1.6648 -0.1177 1.9261 -0.0035 0.0804 0.0129 -0.0030 -0.0244 0.0670 0.0434 0.0573 0.0278 -0.0578 -0.0095 0.0037 -0.0388 -0.0125 -0.0292 refined 10.6125 22.0998 -9.3901 X-RAY DIFFRACTION A 34 A 8 A 134 A 108 X-RAY DIFFRACTION 1 B 34 B 8 B 134 B 108 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric gel filtration gel filtration A MSE 77 SELENOMETHIONINE A MSE 51 MET A MSE 84 SELENOMETHIONINE A MSE 58 MET B MSE 77 SELENOMETHIONINE B MSE 51 MET B MSE 84 SELENOMETHIONINE B MSE 58 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 36 A N LYS 10 A O THR 61 A O THR 35 A N PHE 60 A N PHE 34 A O THR 67 A O THR 41 A N LEU 66 A N LEU 40 A O ILE 105 A O ILE 79 A N ARG 43 A N ARG 17 A O HIS 126 A O HIS 100 A O GLY 129 A O GLY 103 A N LEU 117 A N LEU 91 A O LYS 116 A O LYS 90 A N THR 82 A N THR 56 A N MSE 77 A N MSE 51 A O ILE 95 A O ILE 69 B N VAL 38 B N VAL 12 B O VAL 59 B O VAL 33 B N PHE 60 B N PHE 34 B O THR 67 B O THR 41 B N LEU 66 B N LEU 40 B O ILE 105 B O ILE 79 B N ARG 43 B N ARG 17 B O HIS 126 B O HIS 100 B O PHE 131 B O PHE 105 B N TYR 115 B N TYR 89 B O LYS 116 B O LYS 90 B N THR 82 B N THR 56 B N ILE 81 B N ILE 55 B O TYR 91 B O TYR 65 1 A CD LYS 36 A CD LYS 10 1 Y 1 A CE LYS 36 A CE LYS 10 1 Y 1 A NZ LYS 36 A NZ LYS 10 1 Y 1 A CG ASN 54 A CG ASN 28 1 Y 1 A OD1 ASN 54 A OD1 ASN 28 1 Y 1 A ND2 ASN 54 A ND2 ASN 28 1 Y 1 A CG GLU 134 A CG GLU 108 1 Y 1 A CD GLU 134 A CD GLU 108 1 Y 1 A OE1 GLU 134 A OE1 GLU 108 1 Y 1 A OE2 GLU 134 A OE2 GLU 108 1 Y 1 B CG LYS 36 B CG LYS 10 1 Y 1 B CD LYS 36 B CD LYS 10 1 Y 1 B CE LYS 36 B CE LYS 10 1 Y 1 B NZ LYS 36 B NZ LYS 10 1 Y 1 B CD GLU 39 B CD GLU 13 1 Y 1 B OE1 GLU 39 B OE1 GLU 13 1 Y 1 B OE2 GLU 39 B OE2 GLU 13 1 Y 1 B CG ASN 54 B CG ASN 28 1 Y 1 B OD1 ASN 54 B OD1 ASN 28 1 Y 1 B ND2 ASN 54 B ND2 ASN 28 1 Y 1 B CG TYR 64 B CG TYR 38 1 Y 1 B CD1 TYR 64 B CD1 TYR 38 1 Y 1 B CD2 TYR 64 B CD2 TYR 38 1 Y 1 B CE1 TYR 64 B CE1 TYR 38 1 Y 1 B CE2 TYR 64 B CE2 TYR 38 1 Y 1 B CZ TYR 64 B CZ TYR 38 1 Y 1 B OH TYR 64 B OH TYR 38 1 Y 1 A GLY 27 A GLY 1 1 Y 1 A ALA 28 A ALA 2 1 Y 1 A ASN 29 A ASN 3 1 Y 1 A THR 30 A THR 4 1 Y 1 A THR 31 A THR 5 1 Y 1 A GLU 32 A GLU 6 1 Y 1 A THR 33 A THR 7 1 Y 1 A PRO 47 A PRO 21 1 Y 1 A ILE 48 A ILE 22 1 Y 1 A ARG 49 A ARG 23 1 Y 1 A SER 50 A SER 24 1 Y 1 A ALA 51 A ALA 25 1 Y 1 A ALA 52 A ALA 26 1 Y 1 A THR 53 A THR 27 1 Y 1 B GLY 27 B GLY 1 1 Y 1 B ALA 28 B ALA 2 1 Y 1 B ASN 29 B ASN 3 1 Y 1 B THR 30 B THR 4 1 Y 1 B THR 31 B THR 5 1 Y 1 B GLU 32 B GLU 6 1 Y 1 B THR 33 B THR 7 1 Y 1 B ASP 46 B ASP 20 1 Y 1 B PRO 47 B PRO 21 1 Y 1 B ILE 48 B ILE 22 1 Y 1 B ARG 49 B ARG 23 1 Y 1 B SER 50 B SER 24 1 Y 1 B ALA 51 B ALA 25 1 Y 1 B ALA 52 B ALA 26 1 Y 1 B THR 53 B THR 27 1 Y 1 A ASP 74 -159.09 5.85 1 B ASP 74 -153.23 6.03 18.342 0.370 0.000 -0.050 0.320 0.000 -0.700 0.965 0.947 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. THE FOLLOWING REGIONS ARE DISORDERED: A/B0, A/B28-33, A47-53, B46-53. 0.220 0.174 0.176 1.700 28.677 1283 25099 5.100 99.630 3.951 0.068 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 SAD 0.098 0.104 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.700 28.677 283 1722 0 0 1439 0.015 0.022 1532 0.001 0.020 1019 1.494 1.977 2099 0.845 3.000 2516 6.224 5.000 205 41.188 25.156 64 12.758 15.000 259 16.805 15.000 6 0.087 0.200 244 0.006 0.020 1708 0.001 0.020 288 0.193 0.200 235 0.210 0.200 1061 0.175 0.200 712 0.089 0.200 876 0.116 0.200 191 0.134 0.200 10 0.180 0.200 21 0.171 0.200 19 1.914 3.000 1033 0.552 3.000 391 2.717 5.000 1579 4.374 8.000 625 5.982 11.000 509 1 A 1 553 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.120 0.500 1 A 1 664 X-RAY DIFFRACTION LOOSE POSITIONAL 0.360 5.000 1 A 1 553 X-RAY DIFFRACTION MEDIUM THERMAL 0.580 2.000 1 A 1 664 X-RAY DIFFRACTION LOOSE THERMAL 1.150 10.000 0.365 0.270 1.744 74 1685 1759 20 95.440 24.306 1.70 28.677 3D33 25116 0.098 0.098 1 4.600 7.400 99.600 0.871 1.70 1.74 0.9 12323 1763 0.871 1 7.00 95.70 0.696 1.74 1.79 1.1 13415 1803 0.696 1 7.40 100.00 0.550 1.79 1.84 1.4 13163 1769 0.550 1 7.40 100.00 0.432 1.84 1.90 1.8 12677 1698 0.432 1 7.50 100.00 0.335 1.90 1.96 2.2 12476 1675 0.335 1 7.40 100.00 0.250 1.96 2.03 2.9 11840 1594 0.250 1 7.40 100.00 0.203 2.03 2.11 3.6 11366 1530 0.203 1 7.40 100.00 0.177 2.11 2.19 4.1 11136 1495 0.177 1 7.40 100.00 0.157 2.19 2.29 4.5 10606 1425 0.157 1 7.40 100.00 0.139 2.29 2.40 5.0 10194 1370 0.139 1 7.40 100.00 0.123 2.40 2.53 5.5 9715 1303 0.123 1 7.50 100.00 0.105 2.53 2.69 6.3 9233 1240 0.105 1 7.40 100.00 0.095 2.69 2.87 6.6 8635 1156 0.095 1 7.50 100.00 0.084 2.87 3.10 7.6 8099 1083 0.084 1 7.50 100.00 0.073 3.10 3.40 8.3 7440 996 0.073 1 7.50 100.00 0.067 3.40 3.80 8.7 6694 896 0.067 1 7.50 100.00 0.066 3.80 4.39 8.8 6017 809 0.066 1 7.40 100.00 0.068 4.39 5.38 8.6 5004 681 0.068 1 7.30 100.00 0.072 5.38 7.60 8.7 3807 534 0.072 1 7.10 100.00 0.063 7.60 28.68 9.4 1979 296 0.063 1 6.70 97.20 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 data reduction MOSFLM Crystal structure of a duf3244 family protein with an immunoglobulin-like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc 8482 at 1.70 A resolution 1 N N 1 N N 2 N N 2 N N AUTHORS STATE THAT ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY (anSEC) SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. A PRO 96 A PRO 70 HELX_P A SER 100 A SER 74 5 1 5 B PRO 96 B PRO 70 HELX_P B SER 100 B SER 74 5 2 5 covale 1.339 both A ASP 76 A C ASP 50 1_555 A MSE 77 A N MSE 51 1_555 covale 1.324 both A MSE 77 A C MSE 51 1_555 A THR 78 A N THR 52 1_555 covale 1.324 both A ASP 83 A C ASP 57 1_555 A MSE 84 A N MSE 58 1_555 covale 1.328 both A MSE 84 A C MSE 58 1_555 A ALA 85 A N ALA 59 1_555 covale 1.332 both B ASP 76 B C ASP 50 1_555 B MSE 77 B N MSE 51 1_555 covale 1.324 both B MSE 77 B C MSE 51 1_555 B THR 78 B N THR 52 1_555 covale 1.331 both B ASP 83 B C ASP 57 1_555 B MSE 84 B N MSE 58 1_555 covale 1.334 both B MSE 84 B C MSE 58 1_555 B ALA 85 B N ALA 59 1_555 UNKNOWN FUNCTION Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function A THR 122 A THR 96 1 A PRO 123 A PRO 97 3.66 B THR 122 B THR 96 1 B PRO 123 B PRO 97 0.49 A B A 34 A PRO 8 A 134 A GLU 108 5 B 34 B PRO 8 B 134 B GLU 108 5 A6KX32_BACV8 UNP 1 28 A6KX32 ANTTETPVKDVELDGRWDDPIRSAATNCPITVFTDGYLLTLKNASPDRDMTIRITDMAKGGVVYENDIPEVQSAYITISI ANFPAEEYKLEITGTPSGHLTGYFTKE 28 134 3D33 28 134 A6KX32 A 1 2 108 28 134 3D33 28 134 A6KX32 B 1 2 108 1 expression tag GLY 27 3D33 A A6KX32 UNP 1 2 expression tag GLY 27 3D33 B A6KX32 UNP 1 4 5 4 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 36 A LYS 10 A ASP 37 A ASP 11 A ILE 57 A ILE 31 A ASP 62 A ASP 36 A LEU 65 A LEU 39 A ASN 70 A ASN 44 A TYR 102 A TYR 76 A SER 106 A SER 80 A ASP 41 A ASP 15 A ARG 43 A ARG 17 A HIS 126 A HIS 100 A LYS 133 A LYS 107 A GLU 113 A GLU 87 A THR 122 A THR 96 A ASP 76 A ASP 50 A ASP 83 A ASP 57 A VAL 89 A VAL 63 A ILE 95 A ILE 69 B LYS 36 B LYS 10 B VAL 38 B VAL 12 B ILE 57 B ILE 31 B ASP 62 B ASP 36 B LEU 65 B LEU 39 B ASN 70 B ASN 44 B TYR 102 B TYR 76 B SER 106 B SER 80 B ASP 41 B ASP 15 B ARG 43 B ARG 17 B HIS 126 B HIS 100 B LYS 133 B LYS 107 B GLU 113 B GLU 87 B THR 122 B THR 96 B ASP 76 B ASP 50 B ASP 83 B ASP 57 B VAL 89 B VAL 63 B ILE 95 B ILE 69 4 P 1 21 1