0.015779
0.000000
0.000000
0.000000
0.015779
0.000000
0.000000
0.000000
0.007015
0.00000
0.00000
0.00000
Rosen-Wolff, A.
Roesler, J.
Romanowski, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
63.377
63.377
142.547
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C H3 F
34.033
fluoromethane
Fluoro methyl group
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H7 Cl O2
170.593
benzyl chlorocarbonate
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
F
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
R
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
S
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
Y
147
N
C
Y
148
N
N
Y
149
N
C
Y
150
N
C
Y
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
S
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
S
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
C
N
279
N
O
N
280
N
O
N
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
N
288
N
CL
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
R
C
N
332
N
O
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
N
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
doub
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
Y
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
Y
252
N
doub
Y
253
N
sing
Y
254
N
sing
N
255
N
sing
Y
256
N
doub
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
Y
339
N
doub
Y
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
To be Published
0353
Mutated, structurally altered caspase-1 with decreased enzymatic and increased RIP2-meditated inflammatory activity leads to a new type of periodic fever (ICE fever).
2008
10.2210/pdb3d6h/pdb
pdb_00003d6h
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
160
1
Vertically collimating premirror, LN2 cooled double-crystal silicon (111) monochromator, toroidal focusing M2 mirror
CCD
2006-08-28
ADSC QUANTUM 315
iquid Nitrogen cooled Dual Crystal; crystal type S(111)
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
5.0.2
ALS
0.98
SYNCHROTRON
ALS BEAMLINE 5.0.2
19974.010
Caspase-1
3.4.22.36
Caspase-1 subunit p20
N263S
1
man
polymer
10389.950
Caspase-1 precursor
3.4.22.36
Caspase-1 subunit p10
1
man
polymer
471.907
N-[(benzyloxy)carbonyl]-L-valyl-N-[(2S)-1-carboxy-4-fluoro-3-oxobutan-2-yl]-L-alaninamide
1
syn
polymer
18.015
water
180
nat
water
CASP-1, Interleukin-1 beta convertase, IL-1BC, IL-1 beta-converting enzyme, ICE, Interleukin-1 beta-converting enzyme, p45, Caspase-1 subunit p20, Caspase-1 subunit p10
CASP-1, Interleukin-1 beta convertase, IL-1BC, IL-1 beta-converting enzyme, ICE, Interleukin-1 beta-converting enzyme, p45, Caspase-1 subunit p20, Caspase-1 subunit p10
no
no
MNPAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY
SVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFSMLNTKNCPSLKDKPK
VIIIQACRGDSPGVVWFKD
MNPAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY
SVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFSMLNTKNCPSLKDKPK
VIIIQACRGDSPGVVWFKD
A
polypeptide(L)
no
no
MAIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTERVTLT
RCFYLFPGH
MAIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTERVTLT
RCFYLFPGH
B
polypeptide(L)
no
yes
(PHQ)VAD(CF0)
XVADX
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
CASP1, IL1BC, IL1BCE
9606
Homo sapiens
562
Escherichia coli
BL21(DE3) Codon+
PLASMID
pRSET B
human
sample
CASP1, IL1BC, IL1BCE
9606
Homo sapiens
562
Escherichia coli
BL21(DE3) Codon+
PLASMID
pRSET B
1
2.36
47.82
VAPOR DIFFUSION, HANGING DROP
6
Crystals obtained by hanging-drop vapor diffusion at 4 C (277K) against a reservoir of 0.1 M PIPES pH 6.0, 75-175 mM (NH4)2SO4, 25% PEG 2000 MME, 10 mM DTT, 3 mM NaN3, and 2 mM MgCl2. All crystals cryoprotected in mother liquors supplemented with 20% (v/v) glycerol for 30-90 sec and immersion in liquid nitrogen. , VAPOR DIFFUSION, HANGING DROP
277
database_2
pdbx_struct_special_symmetry
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Advisory
Atomic model
Database references
Derived calculations
Non-polymer description
Refinement description
Structure summary
Version format compliance
Other
Database references
Derived calculations
Data collection
Refinement description
1
0
2010-03-02
1
1
2011-07-13
1
2
2012-12-12
1
3
2021-10-20
1
4
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2008-05-19
REL
REL
HOH
water
1SC3
PDB
experimental model
Inhibitor
N-[(benzyloxy)carbonyl]-L-valyl-N-[(1S)-1-(carboxymethyl)-3-fluoro-2-oxopropyl]-L-alaninamide
Peptide-like
HOH
298
4
HOH
HOH
298
A
HOH
299
4
HOH
HOH
299
A
HOH
300
4
HOH
HOH
300
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
321
4
HOH
HOH
321
A
HOH
322
4
HOH
HOH
322
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
326
4
HOH
HOH
326
A
HOH
327
4
HOH
HOH
327
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
332
4
HOH
HOH
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
401
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
2
B
HOH
3
4
HOH
HOH
3
B
HOH
5
4
HOH
HOH
5
B
HOH
7
4
HOH
HOH
7
B
HOH
8
4
HOH
HOH
8
B
HOH
9
4
HOH
HOH
9
B
HOH
11
4
HOH
HOH
11
B
HOH
15
4
HOH
HOH
15
B
HOH
20
4
HOH
HOH
20
B
HOH
22
4
HOH
HOH
22
B
HOH
25
4
HOH
HOH
25
B
HOH
29
4
HOH
HOH
29
B
HOH
30
4
HOH
HOH
30
B
HOH
32
4
HOH
HOH
32
B
HOH
34
4
HOH
HOH
34
B
HOH
35
4
HOH
HOH
35
B
HOH
38
4
HOH
HOH
38
B
HOH
39
4
HOH
HOH
39
B
HOH
41
4
HOH
HOH
41
B
HOH
46
4
HOH
HOH
46
B
HOH
51
4
HOH
HOH
51
B
HOH
55
4
HOH
HOH
55
B
HOH
61
4
HOH
HOH
61
B
HOH
62
4
HOH
HOH
62
B
HOH
65
4
HOH
HOH
65
B
HOH
67
4
HOH
HOH
67
B
HOH
69
4
HOH
HOH
69
B
HOH
70
4
HOH
HOH
70
B
HOH
72
4
HOH
HOH
72
B
HOH
77
4
HOH
HOH
77
B
HOH
78
4
HOH
HOH
78
B
HOH
81
4
HOH
HOH
81
B
HOH
82
4
HOH
HOH
82
B
HOH
84
4
HOH
HOH
84
B
HOH
85
4
HOH
HOH
85
B
HOH
88
4
HOH
HOH
88
B
HOH
92
4
HOH
HOH
92
B
HOH
94
4
HOH
HOH
94
B
HOH
95
4
HOH
HOH
95
B
HOH
99
4
HOH
HOH
99
B
HOH
101
4
HOH
HOH
101
B
HOH
103
4
HOH
HOH
103
B
HOH
105
4
HOH
HOH
105
B
HOH
108
4
HOH
HOH
108
B
HOH
110
4
HOH
HOH
110
B
HOH
112
4
HOH
HOH
112
B
HOH
114
4
HOH
HOH
114
B
HOH
115
4
HOH
HOH
115
B
HOH
119
4
HOH
HOH
119
B
HOH
120
4
HOH
HOH
120
B
HOH
123
4
HOH
HOH
123
B
HOH
125
4
HOH
HOH
125
B
HOH
126
4
HOH
HOH
126
B
HOH
127
4
HOH
HOH
127
B
HOH
129
4
HOH
HOH
129
B
HOH
134
4
HOH
HOH
134
B
HOH
135
4
HOH
HOH
135
B
HOH
137
4
HOH
HOH
137
B
HOH
138
4
HOH
HOH
138
B
HOH
142
4
HOH
HOH
142
B
HOH
143
4
HOH
HOH
143
B
HOH
144
4
HOH
HOH
144
B
HOH
148
4
HOH
HOH
148
B
HOH
149
4
HOH
HOH
149
B
HOH
151
4
HOH
HOH
151
B
HOH
153
4
HOH
HOH
153
B
HOH
155
4
HOH
HOH
155
B
HOH
160
4
HOH
HOH
160
B
HOH
161
4
HOH
HOH
161
B
HOH
163
4
HOH
HOH
163
B
HOH
165
4
HOH
HOH
165
B
HOH
168
4
HOH
HOH
168
B
HOH
173
4
HOH
HOH
173
B
HOH
178
4
HOH
HOH
178
B
HOH
180
4
HOH
HOH
180
B
HOH
181
4
HOH
HOH
181
B
HOH
400
4
HOH
HOH
400
C
n
1
119
A
n
2
120
A
n
3
121
A
n
4
122
A
n
5
123
A
n
6
124
A
n
7
125
A
n
8
126
A
n
9
127
A
n
10
128
A
n
11
129
A
n
12
130
A
n
13
131
A
ASN
132
n
14
ASN
132
A
VAL
133
n
15
VAL
133
A
LYS
134
n
16
LYS
134
A
LEU
135
n
17
LEU
135
A
CYS
136
n
18
CYS
136
A
SER
137
n
19
SER
137
A
LEU
138
n
20
LEU
138
A
GLU
139
n
21
GLU
139
A
GLU
140
n
22
GLU
140
A
ALA
141
n
23
ALA
141
A
GLN
142
n
24
GLN
142
A
ARG
143
n
25
ARG
143
A
ILE
144
n
26
ILE
144
A
TRP
145
n
27
TRP
145
A
LYS
146
n
28
LYS
146
A
GLN
147
n
29
GLN
147
A
LYS
148
n
30
LYS
148
A
SER
149
n
31
SER
149
A
ALA
150
n
32
ALA
150
A
GLU
151
n
33
GLU
151
A
ILE
152
n
34
ILE
152
A
TYR
153
n
35
TYR
153
A
PRO
154
n
36
PRO
154
A
ILE
155
n
37
ILE
155
A
MET
156
n
38
MET
156
A
ASP
157
n
39
ASP
157
A
LYS
158
n
40
LYS
158
A
SER
159
n
41
SER
159
A
SER
160
n
42
SER
160
A
ARG
161
n
43
ARG
161
A
THR
162
n
44
THR
162
A
ARG
163
n
45
ARG
163
A
LEU
164
n
46
LEU
164
A
ALA
165
n
47
ALA
165
A
LEU
166
n
48
LEU
166
A
ILE
167
n
49
ILE
167
A
ILE
168
n
50
ILE
168
A
CYS
169
n
51
CYS
169
A
ASN
170
n
52
ASN
170
A
GLU
171
n
53
GLU
171
A
GLU
172
n
54
GLU
172
A
PHE
173
n
55
PHE
173
A
ASP
174
n
56
ASP
174
A
SER
175
n
57
SER
175
A
ILE
176
n
58
ILE
176
A
PRO
177
n
59
PRO
177
A
ARG
178
n
60
ARG
178
A
ARG
179
n
61
ARG
179
A
THR
180
n
62
THR
180
A
GLY
181
n
63
GLY
181
A
ALA
182
n
64
ALA
182
A
GLU
183
n
65
GLU
183
A
VAL
184
n
66
VAL
184
A
ASP
185
n
67
ASP
185
A
ILE
186
n
68
ILE
186
A
THR
187
n
69
THR
187
A
GLY
188
n
70
GLY
188
A
MET
189
n
71
MET
189
A
THR
190
n
72
THR
190
A
MET
191
n
73
MET
191
A
LEU
192
n
74
LEU
192
A
LEU
193
n
75
LEU
193
A
GLN
194
n
76
GLN
194
A
ASN
195
n
77
ASN
195
A
LEU
196
n
78
LEU
196
A
GLY
197
n
79
GLY
197
A
TYR
198
n
80
TYR
198
A
SER
199
n
81
SER
199
A
VAL
200
n
82
VAL
200
A
ASP
201
n
83
ASP
201
A
VAL
202
n
84
VAL
202
A
LYS
203
n
85
LYS
203
A
LYS
204
n
86
LYS
204
A
ASN
205
n
87
ASN
205
A
LEU
206
n
88
LEU
206
A
THR
207
n
89
THR
207
A
ALA
208
n
90
ALA
208
A
SER
209
n
91
SER
209
A
ASP
210
n
92
ASP
210
A
MET
211
n
93
MET
211
A
THR
212
n
94
THR
212
A
THR
213
n
95
THR
213
A
GLU
214
n
96
GLU
214
A
LEU
215
n
97
LEU
215
A
GLU
216
n
98
GLU
216
A
ALA
217
n
99
ALA
217
A
PHE
218
n
100
PHE
218
A
ALA
219
n
101
ALA
219
A
HIS
220
n
102
HIS
220
A
ARG
221
n
103
ARG
221
A
PRO
222
n
104
PRO
222
A
GLU
223
n
105
GLU
223
A
HIS
224
n
106
HIS
224
A
LYS
225
n
107
LYS
225
A
THR
226
n
108
THR
226
A
SER
227
n
109
SER
227
A
ASP
228
n
110
ASP
228
A
SER
229
n
111
SER
229
A
THR
230
n
112
THR
230
A
PHE
231
n
113
PHE
231
A
LEU
232
n
114
LEU
232
A
VAL
233
n
115
VAL
233
A
PHE
234
n
116
PHE
234
A
MET
235
n
117
MET
235
A
SER
236
n
118
SER
236
A
HIS
237
n
119
HIS
237
A
GLY
238
n
120
GLY
238
A
ILE
239
n
121
ILE
239
A
ARG
240
n
122
ARG
240
A
GLU
241
n
123
GLU
241
A
GLY
242
n
124
GLY
242
A
ILE
243
n
125
ILE
243
A
CYS
244
n
126
CYS
244
A
GLY
245
n
127
GLY
245
A
LYS
246
n
128
LYS
246
A
LYS
247
n
129
LYS
247
A
HIS
248
n
130
HIS
248
A
SER
249
n
131
SER
249
A
GLU
250
n
132
GLU
250
A
GLN
251
n
133
GLN
251
A
VAL
252
n
134
VAL
252
A
PRO
253
n
135
PRO
253
A
ASP
254
n
136
ASP
254
A
ILE
255
n
137
ILE
255
A
LEU
256
n
138
LEU
256
A
GLN
257
n
139
GLN
257
A
LEU
258
n
140
LEU
258
A
ASN
259
n
141
ASN
259
A
ALA
260
n
142
ALA
260
A
ILE
261
n
143
ILE
261
A
PHE
262
n
144
PHE
262
A
SER
263
n
145
SER
263
A
MET
264
n
146
MET
264
A
LEU
265
n
147
LEU
265
A
ASN
266
n
148
ASN
266
A
THR
267
n
149
THR
267
A
LYS
268
n
150
LYS
268
A
ASN
269
n
151
ASN
269
A
CYS
270
n
152
CYS
270
A
PRO
271
n
153
PRO
271
A
SER
272
n
154
SER
272
A
LEU
273
n
155
LEU
273
A
LYS
274
n
156
LYS
274
A
ASP
275
n
157
ASP
275
A
LYS
276
n
158
LYS
276
A
PRO
277
n
159
PRO
277
A
LYS
278
n
160
LYS
278
A
VAL
279
n
161
VAL
279
A
ILE
280
n
162
ILE
280
A
ILE
281
n
163
ILE
281
A
ILE
282
n
164
ILE
282
A
GLN
283
n
165
GLN
283
A
ALA
284
n
166
ALA
284
A
CYS
285
n
167
CYS
285
A
ARG
286
n
168
ARG
286
A
GLY
287
n
169
GLY
287
A
ASP
288
n
170
ASP
288
A
SER
289
n
171
SER
289
A
PRO
290
n
172
PRO
290
A
GLY
291
n
173
GLY
291
A
VAL
292
n
174
VAL
292
A
VAL
293
n
175
VAL
293
A
TRP
294
n
176
TRP
294
A
PHE
295
n
177
PHE
295
A
LYS
296
n
178
LYS
296
A
ASP
297
n
179
ASP
297
A
n
1
316
B
ALA
317
n
2
ALA
317
B
ILE
318
n
3
ILE
318
B
LYS
319
n
4
LYS
319
B
LYS
320
n
5
LYS
320
B
ALA
321
n
6
ALA
321
B
HIS
322
n
7
HIS
322
B
ILE
323
n
8
ILE
323
B
GLU
324
n
9
GLU
324
B
LYS
325
n
10
LYS
325
B
ASP
326
n
11
ASP
326
B
PHE
327
n
12
PHE
327
B
ILE
328
n
13
ILE
328
B
ALA
329
n
14
ALA
329
B
PHE
330
n
15
PHE
330
B
CYS
331
n
16
CYS
331
B
SER
332
n
17
SER
332
B
SER
333
n
18
SER
333
B
THR
334
n
19
THR
334
B
PRO
335
n
20
PRO
335
B
ASP
336
n
21
ASP
336
B
ASN
337
n
22
ASN
337
B
VAL
338
n
23
VAL
338
B
SER
339
n
24
SER
339
B
TRP
340
n
25
TRP
340
B
ARG
341
n
26
ARG
341
B
HIS
342
n
27
HIS
342
B
PRO
343
n
28
PRO
343
B
THR
344
n
29
THR
344
B
MET
345
n
30
MET
345
B
GLY
346
n
31
GLY
346
B
SER
347
n
32
SER
347
B
VAL
348
n
33
VAL
348
B
PHE
349
n
34
PHE
349
B
ILE
350
n
35
ILE
350
B
GLY
351
n
36
GLY
351
B
ARG
352
n
37
ARG
352
B
LEU
353
n
38
LEU
353
B
ILE
354
n
39
ILE
354
B
GLU
355
n
40
GLU
355
B
HIS
356
n
41
HIS
356
B
MET
357
n
42
MET
357
B
GLN
358
n
43
GLN
358
B
GLU
359
n
44
GLU
359
B
TYR
360
n
45
TYR
360
B
ALA
361
n
46
ALA
361
B
CYS
362
n
47
CYS
362
B
SER
363
n
48
SER
363
B
CYS
364
n
49
CYS
364
B
ASP
365
n
50
ASP
365
B
VAL
366
n
51
VAL
366
B
GLU
367
n
52
GLU
367
B
GLU
368
n
53
GLU
368
B
ILE
369
n
54
ILE
369
B
PHE
370
n
55
PHE
370
B
ARG
371
n
56
ARG
371
B
LYS
372
n
57
LYS
372
B
VAL
373
n
58
VAL
373
B
ARG
374
n
59
ARG
374
B
PHE
375
n
60
PHE
375
B
SER
376
n
61
SER
376
B
PHE
377
n
62
PHE
377
B
GLU
378
n
63
GLU
378
B
GLN
379
n
64
GLN
379
B
PRO
380
n
65
PRO
380
B
ASP
381
n
66
ASP
381
B
GLY
382
n
67
GLY
382
B
ARG
383
n
68
ARG
383
B
ALA
384
n
69
ALA
384
B
GLN
385
n
70
GLN
385
B
MET
386
n
71
MET
386
B
PRO
387
n
72
PRO
387
B
THR
388
n
73
THR
388
B
THR
389
n
74
THR
389
B
GLU
390
n
75
GLU
390
B
ARG
391
n
76
ARG
391
B
VAL
392
n
77
VAL
392
B
THR
393
n
78
THR
393
B
LEU
394
n
79
LEU
394
B
THR
395
n
80
THR
395
B
ARG
396
n
81
ARG
396
B
CYS
397
n
82
CYS
397
B
PHE
398
n
83
PHE
398
B
TYR
399
n
84
TYR
399
B
LEU
400
n
85
LEU
400
B
PHE
401
n
86
PHE
401
B
PRO
402
n
87
PRO
402
B
GLY
403
n
88
GLY
403
B
HIS
404
n
89
HIS
404
B
PHQ
1
n
1
PHQ
1
C
VAL
2
n
2
VAL
2
C
ALA
3
n
3
ALA
3
C
ASP
4
n
4
ASP
4
C
CF0
5
n
5
CF0
5
C
22.3879
2.6880
-8.7156
2.0494
-9.7047
46.8092
1.1386
2.2594
-0.2678
1.7010
0.3204
0.3856
-1.4271
0.5024
-1.4591
0.0791
0.0231
-0.0419
0.0848
0.0435
-0.1596
refined
31.0324
9.3696
41.0698
X-RAY DIFFRACTION
B
317
B
317
X-RAY DIFFRACTION
1
A
1
A
1
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
6
hexameric
18000
-97
20260
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
63.3770000000
63.3770000000
71.2735000000
A
O
ASP
201
A
O
ASP
83
A
N
ILE
167
A
N
ILE
49
A
N
LEU
166
A
N
LEU
48
A
O
VAL
233
A
O
VAL
115
A
N
PHE
234
A
N
PHE
116
A
O
GLN
283
A
O
GLN
165
A
N
ILE
280
A
N
ILE
162
B
O
PHE
330
B
O
PHE
15
B
N
CYS
331
B
N
CYS
16
B
O
THR
388
B
O
THR
73
A
N
ILE
243
A
N
ILE
125
A
O
LEU
256
A
O
LEU
138
B
N
HIS
342
B
N
HIS
27
B
O
GLY
346
B
O
GLY
31
1
B
HOH
110
E
HOH
1
A
MET
119
A
MET
1
1
Y
1
A
ASN
120
A
ASN
2
1
Y
1
A
PRO
121
A
PRO
3
1
Y
1
A
ALA
122
A
ALA
4
1
Y
1
A
MET
123
A
MET
5
1
Y
1
A
PRO
124
A
PRO
6
1
Y
1
A
THR
125
A
THR
7
1
Y
1
A
SER
126
A
SER
8
1
Y
1
A
SER
127
A
SER
9
1
Y
1
A
GLY
128
A
GLY
10
1
Y
1
A
SER
129
A
SER
11
1
Y
1
A
GLU
130
A
GLU
12
1
Y
1
A
GLY
131
A
GLY
13
1
Y
1
B
MET
316
B
MET
1
1
Y
1
B
B
N
CA
ALA
ALA
317
317
0.258
0.020
1.459
1.717
N
1
C
C
C
O
ASP
ASP
4
4
0.200
0.019
1.229
1.429
N
1
A
SER
149
-74.16
-96.05
1
A
ALA
150
-105.27
50.41
1
A
ASN
205
49.60
72.34
1
A
SER
229
178.55
166.88
1
B
ASP
336
88.65
-16.54
1
B
ASP
381
-69.74
-135.34
1
B
ARG
383
-115.92
73.52
1
B
PHE
401
35.95
63.16
27.630
-1.54
0.00
0.00
-1.54
0.00
3.08
0.932
0.904
0.23659
0.19987
0.20174
2.00
20.00
1011
18630
5.1
96.37
4.060
0.116
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.199
0.169
0.80
0.80
1.40
1sc3
MAXIMUM LIKELIHOOD
MASK
2.00
20.00
180
2236
0
0
2056
0.011
0.022
2110
1.183
1.968
2842
5.891
5.000
252
38.304
23.617
94
14.968
15.000
385
15.764
15.000
15
0.082
0.200
317
0.003
0.020
1561
0.189
0.200
920
0.299
0.200
1406
0.133
0.200
165
0.178
0.200
52
0.107
0.200
22
2.679
2.500
1322
3.909
5.000
2070
2.898
2.500
887
4.353
5.000
772
0.271
0.206
2.069
81
1582
15
86.57
2
20
3D6H
19651
0.074
1
7.9
3.8
96.8
0.276
2
2.11
1.6
1
87.4
refinement
REFMAC
5.2.0005
Crystal structure of human caspase-1 with a naturally-occurring Asn263->Ser substitution in complex with 3-[2-(2-benzyloxycarbonylamino-3-methyl-butyrylamino)-propionylamino]-4-oxo-pentanoic acid (z-VAD-FMK)
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
Dimer of the p20/p10 dimer
A
SER
137
A
SER
19
HELX_P
A
LYS
148
A
LYS
30
1
1
12
A
GLY
181
A
GLY
63
HELX_P
A
LEU
196
A
LEU
78
1
2
16
A
THR
207
A
THR
89
HELX_P
A
ARG
221
A
ARG
103
1
3
15
A
PRO
222
A
PRO
104
HELX_P
A
SER
227
A
SER
109
5
4
6
A
GLN
257
A
GLN
139
HELX_P
A
LEU
265
A
LEU
147
1
5
9
A
CYS
270
A
CYS
152
HELX_P
A
LYS
274
A
LYS
156
5
6
5
B
VAL
348
B
VAL
33
HELX_P
B
ALA
361
B
ALA
46
1
7
14
B
ASP
365
B
ASP
50
HELX_P
B
SER
376
B
SER
61
1
8
12
covale
1.813
one
A
CYS
285
A
SG
CYS
167
1_555
C
CF0
5
C
C1
CF0
5
1_555
covale
1.327
both
C
PHQ
1
C
C1
PHQ
1
1_555
C
VAL
2
C
N
VAL
2
1_555
covale
1.526
both
C
ASP
4
C
C
ASP
4
1_555
C
CF0
5
C
C1
CF0
5
1_555
HYDROLASE/HYDROLASE INHIBITOR
catalytic domain, naturally-occurring mutation, Apoptosis, Hydrolase, Protease, Thiol protease, Zymogen, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
CASP1_HUMAN
UNP
1
120
P29466
NPAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYS
VDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKV
IIIQACRGDSPGVVWFKD
CASP1_HUMAN
UNP
2
317
P29466
AIKKAHIEKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPDGRAQMPTTERVTLTR
CFYLFPGH
3D6H
PDB
3
1
3D6H
XVADX
120
297
3D6H
120
297
P29466
A
1
2
179
317
404
3D6H
317
404
P29466
B
2
2
89
1
5
3D6H
1
5
3D6H
C
3
1
5
1
expression tag
MET
119
3D6H
A
P29466
UNP
1
1
ASN
engineered mutation
SER
263
3D6H
A
P29466
UNP
263
145
2
expression tag
MET
316
3D6H
B
P29466
UNP
1
6
2
2
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
199
A
SER
81
A
LYS
204
A
LYS
86
A
LEU
164
A
LEU
46
A
CYS
169
A
CYS
51
A
THR
230
A
THR
112
A
MET
235
A
MET
117
A
LYS
278
A
LYS
160
A
GLN
283
A
GLN
165
B
PHE
327
B
PHE
12
B
CYS
331
B
CYS
16
B
THR
388
B
THR
73
B
GLU
390
B
GLU
75
A
ILE
243
A
ILE
125
A
CYS
244
A
CYS
126
A
ILE
255
A
ILE
137
A
LEU
256
A
LEU
138
B
ARG
341
B
ARG
26
B
HIS
342
B
HIS
27
B
GLY
346
B
GLY
31
B
SER
347
B
SER
32
BINDING SITE FOR CHAIN C OF N-[(BENZYLOXY)CARBONYL]-L-VALYL-N-[(2S)-1-CARBOXY-4-FLUORO- 3-OXOBUTAN-2-YL]-L-ALANINAMIDE
Software
12
A
ARG
179
A
ARG
61
12
1_555
A
HIS
237
A
HIS
119
12
1_555
A
GLY
238
A
GLY
120
12
1_555
A
GLN
283
A
GLN
165
12
1_555
A
CYS
285
A
CYS
167
12
1_555
B
HOH
168
E
HOH
12
1_555
B
SER
339
B
SER
24
12
1_555
B
TRP
340
B
TRP
25
12
1_555
B
ARG
341
B
ARG
26
12
1_555
B
HIS
342
B
HIS
27
12
1_555
B
ARG
383
B
ARG
68
12
1_555
C
HOH
400
F
HOH
12
1_555
96
P 43 21 2