0.015969
0.000000
0.000000
0.000000
0.015969
0.000000
0.000000
0.000000
0.007468
0.00000
0.00000
0.00000
Chang, C.
Wu, R.
Cobb, G.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
62.620
62.620
133.913
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal structure of Putative haloacid dehalogenase-like hydrolase from Bacteroides fragilis
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-04-07
CUSTOM-MADE
double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.97857
1.0
19-BM
APS
0.97857
SYNCHROTRON
APS BEAMLINE 19-BM
25315.854
Putative haloacid dehalogenase-like hydrolase
1
man
polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
222
nat
water
no
yes
SNA(MSE)KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDD(MSE)IKRTIGKTLEESFSILTGITDADQLESF
RQEYSKEADIY(MSE)NANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNH(MSE)PDDWFDIIIGGEDVTHH
KPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSG(MSE)TTAQEFQAYPYDRIISTLGQLISVPEDK
SGCPL
SNAMKYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGITDADQLESFRQEYSKEA
DIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKA
CPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSGCPL
A
APC60104
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
sample
BF0931
272559
Bacteroides fragilis NCTC 9343
Escherichia coli
BL21(DE3)magic
plasmid
pMCSG19b
1
2.59
52.56
VAPOR DIFFUSION, SITTING DROP
5.0
1.0 M Sodium phosphate pH5.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
repository
Initial release
Advisory
Version format compliance
1
0
2008-07-15
1
1
2011-07-13
Y
RCSB
Y
RCSB
2008-05-19
REL
REL
PO4
PHOSPHATE ION
GOL
GLYCEROL
HOH
water
PO4
251
2
PO4
PO4
251
A
PO4
252
2
PO4
PO4
252
A
GOL
253
3
GOL
GOL
253
A
HOH
1
4
HOH
HOH
254
A
HOH
2
4
HOH
HOH
255
A
HOH
3
4
HOH
HOH
256
A
HOH
4
4
HOH
HOH
257
A
HOH
5
4
HOH
HOH
258
A
HOH
6
4
HOH
HOH
259
A
HOH
7
4
HOH
HOH
260
A
HOH
8
4
HOH
HOH
261
A
HOH
9
4
HOH
HOH
262
A
HOH
10
4
HOH
HOH
263
A
HOH
11
4
HOH
HOH
264
A
HOH
12
4
HOH
HOH
265
A
HOH
13
4
HOH
HOH
266
A
HOH
14
4
HOH
HOH
267
A
HOH
15
4
HOH
HOH
268
A
HOH
16
4
HOH
HOH
269
A
HOH
17
4
HOH
HOH
270
A
HOH
18
4
HOH
HOH
271
A
HOH
19
4
HOH
HOH
272
A
HOH
20
4
HOH
HOH
273
A
HOH
21
4
HOH
HOH
274
A
HOH
22
4
HOH
HOH
275
A
HOH
23
4
HOH
HOH
276
A
HOH
24
4
HOH
HOH
277
A
HOH
25
4
HOH
HOH
278
A
HOH
26
4
HOH
HOH
279
A
HOH
27
4
HOH
HOH
280
A
HOH
28
4
HOH
HOH
281
A
HOH
29
4
HOH
HOH
282
A
HOH
30
4
HOH
HOH
283
A
HOH
31
4
HOH
HOH
284
A
HOH
32
4
HOH
HOH
285
A
HOH
33
4
HOH
HOH
286
A
HOH
34
4
HOH
HOH
287
A
HOH
35
4
HOH
HOH
288
A
HOH
36
4
HOH
HOH
289
A
HOH
37
4
HOH
HOH
290
A
HOH
38
4
HOH
HOH
291
A
HOH
39
4
HOH
HOH
292
A
HOH
40
4
HOH
HOH
293
A
HOH
41
4
HOH
HOH
294
A
HOH
42
4
HOH
HOH
295
A
HOH
43
4
HOH
HOH
296
A
HOH
44
4
HOH
HOH
297
A
HOH
45
4
HOH
HOH
298
A
HOH
46
4
HOH
HOH
299
A
HOH
47
4
HOH
HOH
300
A
HOH
48
4
HOH
HOH
301
A
HOH
49
4
HOH
HOH
302
A
HOH
50
4
HOH
HOH
303
A
HOH
51
4
HOH
HOH
304
A
HOH
52
4
HOH
HOH
305
A
HOH
53
4
HOH
HOH
306
A
HOH
54
4
HOH
HOH
307
A
HOH
55
4
HOH
HOH
308
A
HOH
56
4
HOH
HOH
309
A
HOH
57
4
HOH
HOH
310
A
HOH
58
4
HOH
HOH
311
A
HOH
59
4
HOH
HOH
312
A
HOH
60
4
HOH
HOH
313
A
HOH
61
4
HOH
HOH
314
A
HOH
62
4
HOH
HOH
315
A
HOH
63
4
HOH
HOH
316
A
HOH
64
4
HOH
HOH
317
A
HOH
65
4
HOH
HOH
318
A
HOH
66
4
HOH
HOH
319
A
HOH
67
4
HOH
HOH
320
A
HOH
68
4
HOH
HOH
321
A
HOH
69
4
HOH
HOH
322
A
HOH
70
4
HOH
HOH
323
A
HOH
71
4
HOH
HOH
324
A
HOH
72
4
HOH
HOH
325
A
HOH
73
4
HOH
HOH
326
A
HOH
74
4
HOH
HOH
327
A
HOH
75
4
HOH
HOH
328
A
HOH
76
4
HOH
HOH
329
A
HOH
77
4
HOH
HOH
330
A
HOH
78
4
HOH
HOH
331
A
HOH
79
4
HOH
HOH
332
A
HOH
80
4
HOH
HOH
333
A
HOH
81
4
HOH
HOH
334
A
HOH
82
4
HOH
HOH
335
A
HOH
83
4
HOH
HOH
336
A
HOH
84
4
HOH
HOH
337
A
HOH
85
4
HOH
HOH
338
A
HOH
86
4
HOH
HOH
339
A
HOH
87
4
HOH
HOH
340
A
HOH
88
4
HOH
HOH
341
A
HOH
89
4
HOH
HOH
342
A
HOH
90
4
HOH
HOH
343
A
HOH
91
4
HOH
HOH
344
A
HOH
92
4
HOH
HOH
345
A
HOH
93
4
HOH
HOH
346
A
HOH
94
4
HOH
HOH
347
A
HOH
95
4
HOH
HOH
348
A
HOH
96
4
HOH
HOH
349
A
HOH
97
4
HOH
HOH
350
A
HOH
98
4
HOH
HOH
351
A
HOH
99
4
HOH
HOH
352
A
HOH
100
4
HOH
HOH
353
A
HOH
101
4
HOH
HOH
354
A
HOH
102
4
HOH
HOH
355
A
HOH
103
4
HOH
HOH
356
A
HOH
104
4
HOH
HOH
357
A
HOH
105
4
HOH
HOH
358
A
HOH
106
4
HOH
HOH
359
A
HOH
107
4
HOH
HOH
360
A
HOH
108
4
HOH
HOH
361
A
HOH
109
4
HOH
HOH
362
A
HOH
110
4
HOH
HOH
363
A
HOH
111
4
HOH
HOH
364
A
HOH
112
4
HOH
HOH
365
A
HOH
113
4
HOH
HOH
366
A
HOH
114
4
HOH
HOH
367
A
HOH
115
4
HOH
HOH
368
A
HOH
116
4
HOH
HOH
369
A
HOH
117
4
HOH
HOH
370
A
HOH
118
4
HOH
HOH
371
A
HOH
119
4
HOH
HOH
372
A
HOH
120
4
HOH
HOH
373
A
HOH
121
4
HOH
HOH
374
A
HOH
122
4
HOH
HOH
375
A
HOH
123
4
HOH
HOH
376
A
HOH
124
4
HOH
HOH
377
A
HOH
125
4
HOH
HOH
378
A
HOH
126
4
HOH
HOH
379
A
HOH
127
4
HOH
HOH
380
A
HOH
128
4
HOH
HOH
381
A
HOH
129
4
HOH
HOH
382
A
HOH
130
4
HOH
HOH
383
A
HOH
131
4
HOH
HOH
384
A
HOH
132
4
HOH
HOH
385
A
HOH
133
4
HOH
HOH
386
A
HOH
134
4
HOH
HOH
387
A
HOH
135
4
HOH
HOH
388
A
HOH
136
4
HOH
HOH
389
A
HOH
137
4
HOH
HOH
390
A
HOH
138
4
HOH
HOH
391
A
HOH
139
4
HOH
HOH
392
A
HOH
140
4
HOH
HOH
393
A
HOH
141
4
HOH
HOH
394
A
HOH
142
4
HOH
HOH
395
A
HOH
143
4
HOH
HOH
396
A
HOH
144
4
HOH
HOH
397
A
HOH
145
4
HOH
HOH
398
A
HOH
146
4
HOH
HOH
399
A
HOH
147
4
HOH
HOH
400
A
HOH
148
4
HOH
HOH
401
A
HOH
149
4
HOH
HOH
402
A
HOH
150
4
HOH
HOH
403
A
HOH
151
4
HOH
HOH
404
A
HOH
152
4
HOH
HOH
405
A
HOH
153
4
HOH
HOH
406
A
HOH
154
4
HOH
HOH
407
A
HOH
155
4
HOH
HOH
408
A
HOH
156
4
HOH
HOH
409
A
HOH
157
4
HOH
HOH
410
A
HOH
158
4
HOH
HOH
411
A
HOH
159
4
HOH
HOH
412
A
HOH
160
4
HOH
HOH
413
A
HOH
161
4
HOH
HOH
414
A
HOH
162
4
HOH
HOH
415
A
HOH
163
4
HOH
HOH
416
A
HOH
164
4
HOH
HOH
417
A
HOH
165
4
HOH
HOH
418
A
HOH
166
4
HOH
HOH
419
A
HOH
167
4
HOH
HOH
420
A
HOH
168
4
HOH
HOH
421
A
HOH
169
4
HOH
HOH
422
A
HOH
170
4
HOH
HOH
423
A
HOH
171
4
HOH
HOH
424
A
HOH
172
4
HOH
HOH
425
A
HOH
173
4
HOH
HOH
426
A
HOH
174
4
HOH
HOH
427
A
HOH
175
4
HOH
HOH
428
A
HOH
176
4
HOH
HOH
429
A
HOH
177
4
HOH
HOH
430
A
HOH
178
4
HOH
HOH
431
A
HOH
179
4
HOH
HOH
432
A
HOH
180
4
HOH
HOH
433
A
HOH
181
4
HOH
HOH
434
A
HOH
182
4
HOH
HOH
435
A
HOH
183
4
HOH
HOH
436
A
HOH
184
4
HOH
HOH
437
A
HOH
185
4
HOH
HOH
438
A
HOH
186
4
HOH
HOH
439
A
HOH
187
4
HOH
HOH
440
A
HOH
188
4
HOH
HOH
441
A
HOH
189
4
HOH
HOH
442
A
HOH
190
4
HOH
HOH
443
A
HOH
191
4
HOH
HOH
444
A
HOH
192
4
HOH
HOH
445
A
HOH
193
4
HOH
HOH
446
A
HOH
194
4
HOH
HOH
447
A
HOH
195
4
HOH
HOH
448
A
HOH
196
4
HOH
HOH
449
A
HOH
197
4
HOH
HOH
450
A
HOH
198
4
HOH
HOH
451
A
HOH
199
4
HOH
HOH
452
A
HOH
200
4
HOH
HOH
453
A
HOH
201
4
HOH
HOH
454
A
HOH
202
4
HOH
HOH
455
A
HOH
203
4
HOH
HOH
456
A
HOH
204
4
HOH
HOH
457
A
HOH
205
4
HOH
HOH
458
A
HOH
206
4
HOH
HOH
459
A
HOH
207
4
HOH
HOH
460
A
HOH
208
4
HOH
HOH
461
A
HOH
209
4
HOH
HOH
462
A
HOH
210
4
HOH
HOH
463
A
HOH
211
4
HOH
HOH
464
A
HOH
212
4
HOH
HOH
465
A
HOH
213
4
HOH
HOH
466
A
HOH
214
4
HOH
HOH
467
A
HOH
215
4
HOH
HOH
468
A
HOH
216
4
HOH
HOH
469
A
HOH
217
4
HOH
HOH
470
A
HOH
218
4
HOH
HOH
471
A
HOH
219
4
HOH
HOH
472
A
HOH
220
4
HOH
HOH
473
A
HOH
221
4
HOH
HOH
474
A
HOH
222
4
HOH
HOH
475
A
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
LYS
2
n
5
LYS
2
A
TYR
3
n
6
TYR
3
A
THR
4
n
7
THR
4
A
VAL
5
n
8
VAL
5
A
TYR
6
n
9
TYR
6
A
LEU
7
n
10
LEU
7
A
PHE
8
n
11
PHE
8
A
ASP
9
n
12
ASP
9
A
PHE
10
n
13
PHE
10
A
ASP
11
n
14
ASP
11
A
TYR
12
n
15
TYR
12
A
THR
13
n
16
THR
13
A
LEU
14
n
17
LEU
14
A
ALA
15
n
18
ALA
15
A
ASP
16
n
19
ASP
16
A
SER
17
n
20
SER
17
A
SER
18
n
21
SER
18
A
ARG
19
n
22
ARG
19
A
GLY
20
n
23
GLY
20
A
ILE
21
n
24
ILE
21
A
VAL
22
n
25
VAL
22
A
THR
23
n
26
THR
23
A
CYS
24
n
27
CYS
24
A
PHE
25
n
28
PHE
25
A
ARG
26
n
29
ARG
26
A
SER
27
n
30
SER
27
A
VAL
28
n
31
VAL
28
A
LEU
29
n
32
LEU
29
A
GLU
30
n
33
GLU
30
A
ARG
31
n
34
ARG
31
A
HIS
32
n
35
HIS
32
A
GLY
33
n
36
GLY
33
A
TYR
34
n
37
TYR
34
A
THR
35
n
38
THR
35
A
GLY
36
n
39
GLY
36
A
ILE
37
n
40
ILE
37
A
THR
38
n
41
THR
38
A
ASP
39
n
42
ASP
39
A
ASP
40
n
43
ASP
40
A
MSE
41
n
44
MSE
41
A
ILE
42
n
45
ILE
42
A
LYS
43
n
46
LYS
43
A
ARG
44
n
47
ARG
44
A
THR
45
n
48
THR
45
A
ILE
46
n
49
ILE
46
A
GLY
47
n
50
GLY
47
A
LYS
48
n
51
LYS
48
A
THR
49
n
52
THR
49
A
LEU
50
n
53
LEU
50
A
GLU
51
n
54
GLU
51
A
GLU
52
n
55
GLU
52
A
SER
53
n
56
SER
53
A
PHE
54
n
57
PHE
54
A
SER
55
n
58
SER
55
A
ILE
56
n
59
ILE
56
A
LEU
57
n
60
LEU
57
A
THR
58
n
61
THR
58
A
GLY
59
n
62
GLY
59
A
ILE
60
n
63
ILE
60
A
THR
61
n
64
THR
61
A
ASP
62
n
65
ASP
62
A
ALA
63
n
66
ALA
63
A
ASP
64
n
67
ASP
64
A
GLN
65
n
68
GLN
65
A
LEU
66
n
69
LEU
66
A
GLU
67
n
70
GLU
67
A
SER
68
n
71
SER
68
A
PHE
69
n
72
PHE
69
A
ARG
70
n
73
ARG
70
A
GLN
71
n
74
GLN
71
A
GLU
72
n
75
GLU
72
A
TYR
73
n
76
TYR
73
A
SER
74
n
77
SER
74
A
LYS
75
n
78
LYS
75
A
GLU
76
n
79
GLU
76
A
ALA
77
n
80
ALA
77
A
ASP
78
n
81
ASP
78
A
ILE
79
n
82
ILE
79
A
TYR
80
n
83
TYR
80
A
MSE
81
n
84
MSE
81
A
ASN
82
n
85
ASN
82
A
ALA
83
n
86
ALA
83
A
ASN
84
n
87
ASN
84
A
THR
85
n
88
THR
85
A
ILE
86
n
89
ILE
86
A
LEU
87
n
90
LEU
87
A
PHE
88
n
91
PHE
88
A
PRO
89
n
92
PRO
89
A
ASP
90
n
93
ASP
90
A
THR
91
n
94
THR
91
A
LEU
92
n
95
LEU
92
A
PRO
93
n
96
PRO
93
A
THR
94
n
97
THR
94
A
LEU
95
n
98
LEU
95
A
THR
96
n
99
THR
96
A
HIS
97
n
100
HIS
97
A
LEU
98
n
101
LEU
98
A
LYS
99
n
102
LYS
99
A
LYS
100
n
103
LYS
100
A
GLN
101
n
104
GLN
101
A
GLY
102
n
105
GLY
102
A
ILE
103
n
106
ILE
103
A
ARG
104
n
107
ARG
104
A
ILE
105
n
108
ILE
105
A
GLY
106
n
109
GLY
106
A
ILE
107
n
110
ILE
107
A
ILE
108
n
111
ILE
108
A
SER
109
n
112
SER
109
A
THR
110
n
113
THR
110
A
LYS
111
n
114
LYS
111
A
TYR
112
n
115
TYR
112
A
ARG
113
n
116
ARG
113
A
PHE
114
n
117
PHE
114
A
ARG
115
n
118
ARG
115
A
ILE
116
n
119
ILE
116
A
LEU
117
n
120
LEU
117
A
SER
118
n
121
SER
118
A
PHE
119
n
122
PHE
119
A
LEU
120
n
123
LEU
120
A
ARG
121
n
124
ARG
121
A
ASN
122
n
125
ASN
122
A
HIS
123
n
126
HIS
123
A
MSE
124
n
127
MSE
124
A
PRO
125
n
128
PRO
125
A
ASP
126
n
129
ASP
126
A
ASP
127
n
130
ASP
127
A
TRP
128
n
131
TRP
128
A
PHE
129
n
132
PHE
129
A
ASP
130
n
133
ASP
130
A
ILE
131
n
134
ILE
131
A
ILE
132
n
135
ILE
132
A
ILE
133
n
136
ILE
133
A
GLY
134
n
137
GLY
134
A
GLY
135
n
138
GLY
135
A
GLU
136
n
139
GLU
136
A
ASP
137
n
140
ASP
137
A
VAL
138
n
141
VAL
138
A
THR
139
n
142
THR
139
A
HIS
140
n
143
HIS
140
A
HIS
141
n
144
HIS
141
A
LYS
142
n
145
LYS
142
A
PRO
143
n
146
PRO
143
A
ASP
144
n
147
ASP
144
A
PRO
145
n
148
PRO
145
A
GLU
146
n
149
GLU
146
A
GLY
147
n
150
GLY
147
A
LEU
148
n
151
LEU
148
A
LEU
149
n
152
LEU
149
A
LEU
150
n
153
LEU
150
A
ALA
151
n
154
ALA
151
A
ILE
152
n
155
ILE
152
A
ASP
153
n
156
ASP
153
A
ARG
154
n
157
ARG
154
A
LEU
155
n
158
LEU
155
A
LYS
156
n
159
LYS
156
A
ALA
157
n
160
ALA
157
A
CYS
158
n
161
CYS
158
A
PRO
159
n
162
PRO
159
A
GLU
160
n
163
GLU
160
A
GLU
161
n
164
GLU
161
A
VAL
162
n
165
VAL
162
A
LEU
163
n
166
LEU
163
A
TYR
164
n
167
TYR
164
A
ILE
165
n
168
ILE
165
A
GLY
166
n
169
GLY
166
A
ASP
167
n
170
ASP
167
A
SER
168
n
171
SER
168
A
THR
169
n
172
THR
169
A
VAL
170
n
173
VAL
170
A
ASP
171
n
174
ASP
171
A
ALA
172
n
175
ALA
172
A
GLY
173
n
176
GLY
173
A
THR
174
n
177
THR
174
A
ALA
175
n
178
ALA
175
A
ALA
176
n
179
ALA
176
A
ALA
177
n
180
ALA
177
A
ALA
178
n
181
ALA
178
A
GLY
179
n
182
GLY
179
A
VAL
180
n
183
VAL
180
A
SER
181
n
184
SER
181
A
PHE
182
n
185
PHE
182
A
THR
183
n
186
THR
183
A
GLY
184
n
187
GLY
184
A
VAL
185
n
188
VAL
185
A
THR
186
n
189
THR
186
A
SER
187
n
190
SER
187
A
GLY
188
n
191
GLY
188
A
MSE
189
n
192
MSE
189
A
THR
190
n
193
THR
190
A
THR
191
n
194
THR
191
A
ALA
192
n
195
ALA
192
A
GLN
193
n
196
GLN
193
A
GLU
194
n
197
GLU
194
A
PHE
195
n
198
PHE
195
A
GLN
196
n
199
GLN
196
A
ALA
197
n
200
ALA
197
A
TYR
198
n
201
TYR
198
A
PRO
199
n
202
PRO
199
A
TYR
200
n
203
TYR
200
A
ASP
201
n
204
ASP
201
A
ARG
202
n
205
ARG
202
A
ILE
203
n
206
ILE
203
A
ILE
204
n
207
ILE
204
A
SER
205
n
208
SER
205
A
THR
206
n
209
THR
206
A
LEU
207
n
210
LEU
207
A
GLY
208
n
211
GLY
208
A
GLN
209
n
212
GLN
209
A
LEU
210
n
213
LEU
210
A
ILE
211
n
214
ILE
211
A
n
215
212
A
n
216
213
A
n
217
214
A
n
218
215
A
n
219
216
A
n
220
217
A
n
221
218
A
n
222
219
A
n
223
220
A
n
224
221
A
n
225
222
A
1.8490
0.0997
0.0885
2.6804
0.3828
2.7259
-0.0449
0.0559
0.3375
-0.1319
-0.1091
0.5282
-0.5110
-0.1753
0.1540
-0.0139
0.0352
-0.0385
0.0035
-0.0467
0.0658
refined
0.6269
43.4623
81.4372
X-RAY DIFFRACTION
0.8721
-0.9724
-0.1680
3.8098
-0.2157
2.0011
-0.0774
-0.0244
0.0404
0.2041
0.0214
-0.1027
-0.0071
0.0715
0.0560
-0.0980
-0.0185
-0.0243
-0.0694
-0.0201
-0.0927
refined
18.1141
32.2150
91.1474
X-RAY DIFFRACTION
0.9117
0.2158
0.3860
2.0009
0.8975
2.6228
-0.0042
0.0095
-0.0550
-0.0638
-0.2388
0.4155
0.0296
-0.2114
0.2431
-0.1529
0.0095
-0.0310
-0.0276
-0.0962
-0.0389
refined
-0.5692
31.0200
77.0962
X-RAY DIFFRACTION
A
2
A
5
A
16
A
19
X-RAY DIFFRACTION
1
A
88
A
91
A
136
A
139
X-RAY DIFFRACTION
1
A
17
A
20
A
87
A
90
X-RAY DIFFRACTION
2
A
137
A
140
A
211
A
214
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
1
monomeric
A
MSE
41
SELENOMETHIONINE
A
MSE
44
MET
A
MSE
81
SELENOMETHIONINE
A
MSE
84
MET
A
MSE
124
SELENOMETHIONINE
A
MSE
127
MET
A
MSE
189
SELENOMETHIONINE
A
MSE
192
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
133
A
O
ILE
136
A
N
ILE
107
A
N
ILE
110
A
O
GLY
106
A
O
GLY
109
A
N
PHE
8
A
N
PHE
11
A
N
LEU
7
A
N
LEU
10
A
O
LEU
163
A
O
LEU
166
A
N
TYR
164
A
N
TYR
167
A
O
SER
181
A
O
SER
184
A
N
GLY
184
A
N
GLY
187
A
O
ILE
204
A
O
ILE
207
A
N
ASP
16
A
N
ASP
19
A
O
ILE
86
A
O
ILE
89
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
MSE
1
A
MSE
4
1
Y
1
A
SER
212
A
SER
215
1
Y
1
A
VAL
213
A
VAL
216
1
Y
1
A
PRO
214
A
PRO
217
1
Y
1
A
GLU
215
A
GLU
218
1
Y
1
A
ASP
216
A
ASP
219
1
Y
1
A
LYS
217
A
LYS
220
1
Y
1
A
SER
218
A
SER
221
1
Y
1
A
GLY
219
A
GLY
222
1
Y
1
A
CYS
220
A
CYS
223
1
Y
1
A
PRO
221
A
PRO
224
1
Y
1
A
LEU
222
A
LEU
225
1
Y
1
A
A
O
O
MSE
HOH
124
475
2.14
1
A
A
OE1
O
GLU
HOH
72
470
2.19
1
A
A
TRP
PHE
128
129
-96.76
1
-17.94
2.70
111.00
93.06
A
A
A
N
CA
C
PHE
PHE
PHE
129
129
129
N
1
A
PHE
10
-102.76
-71.02
1
A
THR
13
-120.40
-59.05
1
A
HIS
123
-128.63
-72.91
1
A
THR
186
-79.99
44.35
29.087
1.44
0.00
0.00
1.44
0.00
-2.87
0.945
0.927
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.235
0.19786
0.19975
0.19975
2.00
50
940
18404
18404
5.1
98.18
8.272
0.126
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
SAD
0.182
0.161
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.00
50
222
1896
16
0
1658
0.015
0.022
1762
1.525
1.972
2400
8.750
5.000
226
35.542
23.205
78
14.759
15.000
306
17.862
15.000
13
0.120
0.200
276
0.006
0.020
1318
0.209
0.200
847
0.306
0.200
1216
0.180
0.200
207
0.215
0.200
29
0.174
0.200
20
0.740
1.500
1103
1.138
2.000
1749
2.021
3.000
743
2.931
4.500
643
0.31
0.243
2.052
80
1220
1300
20
97.16
24.0
2
50
3D6J
8776
18723
-3
0.103
1
27.52
9.6
99.7
0.428
2.0
2.02
3.17
465
1
6.5
100.0
refinement
REFMAC
5.2.0019
data collection
SBC-Collect
data reduction
HKL-3000
data scaling
HKL-3000
phasing
HKL-3000
Y
Putative haloacid dehalogenase-like hydrolase
Crystal structure of Putative haloacid dehalogenase-like hydrolase from Bacteroides fragilis
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
SER
17
A
SER
20
HELX_P
A
HIS
32
A
HIS
35
1
1
16
A
THR
38
A
THR
41
HELX_P
A
ARG
44
A
ARG
47
1
2
7
A
THR
49
A
THR
52
HELX_P
A
GLY
59
A
GLY
62
1
3
11
A
ASP
62
A
ASP
65
HELX_P
A
MSE
81
A
MSE
84
1
4
20
A
ASN
82
A
ASN
85
HELX_P
A
THR
85
A
THR
88
5
5
4
A
ASP
90
A
ASP
93
HELX_P
A
GLY
102
A
GLY
105
1
6
13
A
TYR
112
A
TYR
115
HELX_P
A
ASN
122
A
ASN
125
1
7
11
A
GLY
134
A
GLY
137
HELX_P
A
VAL
138
A
VAL
141
5
8
5
A
PRO
145
A
PRO
148
HELX_P
A
LEU
155
A
LEU
158
1
9
11
A
CYS
158
A
CYS
161
HELX_P
A
GLU
160
A
GLU
163
5
10
3
A
SER
168
A
SER
171
HELX_P
A
GLY
179
A
GLY
182
1
11
12
A
GLN
193
A
GLN
196
HELX_P
A
TYR
198
A
TYR
201
5
12
6
A
THR
206
A
THR
209
HELX_P
A
ILE
211
A
ILE
214
5
13
6
covale
1.337
A
ASP
40
A
C
ASP
43
1_555
A
MSE
41
A
N
MSE
44
1_555
covale
1.318
A
MSE
41
A
C
MSE
44
1_555
A
ILE
42
A
N
ILE
45
1_555
covale
1.322
A
TYR
80
A
C
TYR
83
1_555
A
MSE
81
A
N
MSE
84
1_555
covale
1.328
A
MSE
81
A
C
MSE
84
1_555
A
ASN
82
A
N
ASN
85
1_555
covale
1.343
A
HIS
123
A
C
HIS
126
1_555
A
MSE
124
A
N
MSE
127
1_555
covale
1.350
A
MSE
124
A
C
MSE
127
1_555
A
PRO
125
A
N
PRO
128
1_555
covale
1.334
A
GLY
188
A
C
GLY
191
1_555
A
MSE
189
A
N
MSE
192
1_555
covale
1.329
A
MSE
189
A
C
MSE
192
1_555
A
THR
190
A
N
THR
193
1_555
HYDROLASE
Bacteroides fragilis, haloacid dehalogenase-like hydrolase, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, Hydrolase
A
ASP
126
A
ASP
129
1
A
ASP
127
A
ASP
130
-15.81
A
LYS
142
A
LYS
145
1
A
PRO
143
A
PRO
146
7.51
Q5LGR4_BACFN
UNP
1
1
Q5LGR4
MKYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGITDADQLESFRQEYSKEADIY
MNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPE
EVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSGCPL
1
222
3D6J
1
222
Q5LGR4
A
1
4
225
1
EXPRESSION TAG
SER
-2
3D6J
A
Q5LGR4
UNP
1
1
EXPRESSION TAG
ASN
-1
3D6J
A
Q5LGR4
UNP
2
1
EXPRESSION TAG
ALA
0
3D6J
A
Q5LGR4
UNP
3
6
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
ILE
131
A
ILE
134
A
ILE
133
A
ILE
136
A
ARG
104
A
ARG
107
A
ILE
108
A
ILE
111
A
VAL
5
A
VAL
8
A
PHE
8
A
PHE
11
A
VAL
162
A
VAL
165
A
GLY
166
A
GLY
169
A
SER
181
A
SER
184
A
VAL
185
A
VAL
188
A
ARG
202
A
ARG
205
A
ILE
204
A
ILE
207
A
ALA
15
A
ALA
18
A
ASP
16
A
ASP
19
A
ILE
86
A
ILE
89
A
LEU
87
A
LEU
90
BINDING SITE FOR RESIDUE PO4 A 251
Software
8
BINDING SITE FOR RESIDUE PO4 A 252
Software
9
BINDING SITE FOR RESIDUE GOL A 253
Software
6
A
ASP
9
A
ASP
12
8
1_555
A
PHE
10
A
PHE
13
8
1_555
A
ASP
11
A
ASP
14
8
1_555
A
SER
109
A
SER
112
8
1_555
A
THR
110
A
THR
113
8
1_555
A
LYS
142
A
LYS
145
8
1_555
A
HOH
261
E
HOH
8
1_555
A
HOH
401
E
HOH
8
1_555
A
GLU
52
A
GLU
55
9
1_555
A
THR
139
A
THR
142
9
1_555
A
HIS
140
A
HIS
143
9
1_555
A
HIS
141
A
HIS
144
9
1_555
A
HOH
297
E
HOH
9
1_555
A
HOH
337
E
HOH
9
1_555
A
HOH
355
E
HOH
9
1_555
A
HOH
370
E
HOH
9
1_555
A
HOH
405
E
HOH
9
1_555
A
ASN
82
A
ASN
85
6
1_555
A
SER
118
A
SER
121
6
1_555
A
ASN
122
A
ASN
125
6
1_555
A
HOH
267
E
HOH
6
1_555
A
HOH
369
E
HOH
6
1_555
A
HOH
385
E
HOH
6
1_555
92
P 41 21 2