0.019542
0.000000
0.000000
0.000000
0.014361
0.000000
0.000000
0.000000
0.008288
0.00000
0.00000
0.00000
Lee, E.F.
Czabotar, P.E.
Colman, P.M.
Fairlie, W.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
51.171
69.635
120.654
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Cell Biol.
JCLBA3
2019
0021-9525
180
341
355
10.1083/jcb.200708096
18209102
A novel BH3 ligand that selectively targets Mcl-1 reveals that apoptosis can proceed without Mcl-1 degradation.
2008
10.2210/pdb3d7v/pdb
pdb_00003d7v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Capillary optics (AXCO)
IMAGE PLATE
2006-03-24
RIGAKU RAXIS IV++
Ni FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
FUSION PROTEIN CONSISTS OF THE N-TERMINAL EXPRESSION TAGS (GPLGS), RESIDUES 171-208 (UNIPROT RESIDUES 152-189) FROM INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG (MOUSE) AND RESIDUES 209-327 FROM INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 (HUMAN)
18227.592
Induced myeloid leukemia cell differentiation protein Mcl-1
Bcl-2 like domain, Myeloid Cell Leukemia 1
1
man
polymer
3156.515
Bcl-2-like protein 11
Bim BH3
L62A, F69A
1
syn
polymer
65.409
ZINC ION
4
syn
non-polymer
18.015
water
120
nat
water
Bcl-2-related protein EAT/mcl1, mcl1/EAT
Bcl2-interacting mediator of cell death
no
no
GPLGSEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKS
LSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLE
GG
GPLGSEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKS
LSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLE
GG
A
polypeptide(L)
no
no
DMRPEIWIAQEARRIGDEANAYYARR
DMRPEIWIAQEARRIGDEANAYYARR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse, human
sample
6
43
MCL1
10090
Mus musculus
511693
Escherichia coli
BL21
Plasmid
pGEX6P-3
mouse, human
sample
44
162
MCL1
9606
Homo sapiens
511693
Escherichia coli
BL21
Plasmid
pGEX6P-3
1
2.51
51.06
VAPOR DIFFUSION, HANGING DROP
5.75
0.2M Zinc Acetate, 0.2M Imidazole, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
entity_src_gen
database_2
entity_src_gen
pdbx_entity_src_syn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Source and taxonomy
Database references
Derived calculations
Source and taxonomy
Data collection
Refinement description
1
0
2008-06-24
1
1
2011-07-13
1
2
2017-08-23
1
3
2021-11-10
1
4
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
_pdbx_entity_src_syn.details
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_scientific
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2008-05-22
REL
REL
ZN
ZINC ION
HOH
water
32630
synthetic construct
sample
FUSION PROTEIN CONSISTS OF THE N-TERMINAL EXPRESSION TAGS (GPLGS), RESIDUES 171-208 (UNIPROT RESIDUES 152-189) FROM INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG (MOUSE) AND RESIDUES 209-327 FROM INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 (HUMAN)
2NL9
PDB
experimental model
ZN
1
3
ZN
ZN
1
A
ZN
2
3
ZN
ZN
2
A
ZN
3
3
ZN
ZN
3
A
ZN
4
3
ZN
ZN
4
A
HOH
2
4
HOH
HOH
328
A
HOH
3
4
HOH
HOH
329
A
HOH
4
4
HOH
HOH
330
A
HOH
6
4
HOH
HOH
331
A
HOH
7
4
HOH
HOH
332
A
HOH
8
4
HOH
HOH
333
A
HOH
9
4
HOH
HOH
334
A
HOH
11
4
HOH
HOH
335
A
HOH
12
4
HOH
HOH
336
A
HOH
13
4
HOH
HOH
337
A
HOH
14
4
HOH
HOH
338
A
HOH
15
4
HOH
HOH
339
A
HOH
18
4
HOH
HOH
340
A
HOH
19
4
HOH
HOH
341
A
HOH
21
4
HOH
HOH
342
A
HOH
23
4
HOH
HOH
343
A
HOH
25
4
HOH
HOH
344
A
HOH
28
4
HOH
HOH
345
A
HOH
29
4
HOH
HOH
346
A
HOH
30
4
HOH
HOH
347
A
HOH
31
4
HOH
HOH
348
A
HOH
33
4
HOH
HOH
349
A
HOH
34
4
HOH
HOH
350
A
HOH
35
4
HOH
HOH
351
A
HOH
36
4
HOH
HOH
352
A
HOH
38
4
HOH
HOH
353
A
HOH
39
4
HOH
HOH
354
A
HOH
40
4
HOH
HOH
355
A
HOH
41
4
HOH
HOH
356
A
HOH
42
4
HOH
HOH
357
A
HOH
43
4
HOH
HOH
358
A
HOH
46
4
HOH
HOH
359
A
HOH
47
4
HOH
HOH
360
A
HOH
50
4
HOH
HOH
361
A
HOH
51
4
HOH
HOH
362
A
HOH
53
4
HOH
HOH
363
A
HOH
54
4
HOH
HOH
364
A
HOH
55
4
HOH
HOH
365
A
HOH
56
4
HOH
HOH
366
A
HOH
58
4
HOH
HOH
367
A
HOH
59
4
HOH
HOH
368
A
HOH
60
4
HOH
HOH
369
A
HOH
61
4
HOH
HOH
370
A
HOH
62
4
HOH
HOH
371
A
HOH
63
4
HOH
HOH
372
A
HOH
64
4
HOH
HOH
373
A
HOH
65
4
HOH
HOH
374
A
HOH
66
4
HOH
HOH
375
A
HOH
67
4
HOH
HOH
376
A
HOH
69
4
HOH
HOH
377
A
HOH
70
4
HOH
HOH
378
A
HOH
71
4
HOH
HOH
379
A
HOH
72
4
HOH
HOH
380
A
HOH
73
4
HOH
HOH
381
A
HOH
74
4
HOH
HOH
382
A
HOH
75
4
HOH
HOH
383
A
HOH
76
4
HOH
HOH
384
A
HOH
77
4
HOH
HOH
385
A
HOH
78
4
HOH
HOH
386
A
HOH
79
4
HOH
HOH
387
A
HOH
80
4
HOH
HOH
388
A
HOH
81
4
HOH
HOH
389
A
HOH
82
4
HOH
HOH
390
A
HOH
83
4
HOH
HOH
391
A
HOH
84
4
HOH
HOH
392
A
HOH
86
4
HOH
HOH
393
A
HOH
87
4
HOH
HOH
394
A
HOH
88
4
HOH
HOH
395
A
HOH
89
4
HOH
HOH
396
A
HOH
90
4
HOH
HOH
397
A
HOH
91
4
HOH
HOH
398
A
HOH
92
4
HOH
HOH
399
A
HOH
94
4
HOH
HOH
400
A
HOH
95
4
HOH
HOH
401
A
HOH
96
4
HOH
HOH
402
A
HOH
97
4
HOH
HOH
403
A
HOH
98
4
HOH
HOH
404
A
HOH
99
4
HOH
HOH
405
A
HOH
100
4
HOH
HOH
406
A
HOH
101
4
HOH
HOH
407
A
HOH
102
4
HOH
HOH
408
A
HOH
103
4
HOH
HOH
409
A
HOH
104
4
HOH
HOH
410
A
HOH
105
4
HOH
HOH
411
A
HOH
107
4
HOH
HOH
412
A
HOH
108
4
HOH
HOH
413
A
HOH
109
4
HOH
HOH
414
A
HOH
111
4
HOH
HOH
415
A
HOH
114
4
HOH
HOH
416
A
HOH
115
4
HOH
HOH
417
A
HOH
118
4
HOH
HOH
418
A
HOH
119
4
HOH
HOH
419
A
HOH
120
4
HOH
HOH
420
A
HOH
1
4
HOH
HOH
77
B
HOH
5
4
HOH
HOH
78
B
HOH
10
4
HOH
HOH
79
B
HOH
16
4
HOH
HOH
80
B
HOH
17
4
HOH
HOH
81
B
HOH
20
4
HOH
HOH
82
B
HOH
22
4
HOH
HOH
83
B
HOH
24
4
HOH
HOH
84
B
HOH
26
4
HOH
HOH
85
B
HOH
27
4
HOH
HOH
86
B
HOH
32
4
HOH
HOH
87
B
HOH
37
4
HOH
HOH
88
B
HOH
44
4
HOH
HOH
89
B
HOH
45
4
HOH
HOH
90
B
HOH
48
4
HOH
HOH
91
B
HOH
49
4
HOH
HOH
92
B
HOH
52
4
HOH
HOH
93
B
HOH
57
4
HOH
HOH
94
B
HOH
68
4
HOH
HOH
95
B
HOH
85
4
HOH
HOH
96
B
HOH
93
4
HOH
HOH
97
B
HOH
106
4
HOH
HOH
98
B
HOH
110
4
HOH
HOH
99
B
HOH
112
4
HOH
HOH
100
B
HOH
113
4
HOH
HOH
101
B
HOH
116
4
HOH
HOH
102
B
HOH
117
4
HOH
HOH
103
B
n
1
166
A
n
2
167
A
n
3
168
A
n
4
169
A
n
5
170
A
n
6
171
A
ASP
172
n
7
ASP
172
A
ASP
173
n
8
ASP
173
A
LEU
174
n
9
LEU
174
A
TYR
175
n
10
TYR
175
A
ARG
176
n
11
ARG
176
A
GLN
177
n
12
GLN
177
A
SER
178
n
13
SER
178
A
LEU
179
n
14
LEU
179
A
GLU
180
n
15
GLU
180
A
ILE
181
n
16
ILE
181
A
ILE
182
n
17
ILE
182
A
SER
183
n
18
SER
183
A
ARG
184
n
19
ARG
184
A
TYR
185
n
20
TYR
185
A
LEU
186
n
21
LEU
186
A
ARG
187
n
22
ARG
187
A
GLU
188
n
23
GLU
188
A
GLN
189
n
24
GLN
189
A
ALA
190
n
25
ALA
190
A
THR
191
n
26
THR
191
A
GLY
192
n
27
GLY
192
A
SER
193
n
28
SER
193
A
LYS
194
n
29
LYS
194
A
ASP
195
n
30
ASP
195
A
n
31
196
A
n
32
197
A
n
33
198
A
n
34
199
A
n
35
200
A
n
36
201
A
n
37
202
A
GLY
203
n
38
GLY
203
A
ALA
204
n
39
ALA
204
A
ALA
205
n
40
ALA
205
A
GLY
206
n
41
GLY
206
A
ARG
207
n
42
ARG
207
A
ARG
208
n
43
ARG
208
A
ALA
209
n
44
ALA
209
A
LEU
210
n
45
LEU
210
A
GLU
211
n
46
GLU
211
A
THR
212
n
47
THR
212
A
LEU
213
n
48
LEU
213
A
ARG
214
n
49
ARG
214
A
ARG
215
n
50
ARG
215
A
VAL
216
n
51
VAL
216
A
GLY
217
n
52
GLY
217
A
ASP
218
n
53
ASP
218
A
GLY
219
n
54
GLY
219
A
VAL
220
n
55
VAL
220
A
GLN
221
n
56
GLN
221
A
ARG
222
n
57
ARG
222
A
ASN
223
n
58
ASN
223
A
HIS
224
n
59
HIS
224
A
GLU
225
n
60
GLU
225
A
THR
226
n
61
THR
226
A
ALA
227
n
62
ALA
227
A
PHE
228
n
63
PHE
228
A
GLN
229
n
64
GLN
229
A
GLY
230
n
65
GLY
230
A
MET
231
n
66
MET
231
A
LEU
232
n
67
LEU
232
A
ARG
233
n
68
ARG
233
A
LYS
234
n
69
LYS
234
A
LEU
235
n
70
LEU
235
A
ASP
236
n
71
ASP
236
A
ILE
237
n
72
ILE
237
A
LYS
238
n
73
LYS
238
A
ASN
239
n
74
ASN
239
A
GLU
240
n
75
GLU
240
A
ASP
241
n
76
ASP
241
A
ASP
242
n
77
ASP
242
A
VAL
243
n
78
VAL
243
A
LYS
244
n
79
LYS
244
A
SER
245
n
80
SER
245
A
LEU
246
n
81
LEU
246
A
SER
247
n
82
SER
247
A
ARG
248
n
83
ARG
248
A
VAL
249
n
84
VAL
249
A
MET
250
n
85
MET
250
A
ILE
251
n
86
ILE
251
A
HIS
252
n
87
HIS
252
A
VAL
253
n
88
VAL
253
A
PHE
254
n
89
PHE
254
A
SER
255
n
90
SER
255
A
ASP
256
n
91
ASP
256
A
GLY
257
n
92
GLY
257
A
VAL
258
n
93
VAL
258
A
THR
259
n
94
THR
259
A
ASN
260
n
95
ASN
260
A
TRP
261
n
96
TRP
261
A
GLY
262
n
97
GLY
262
A
ARG
263
n
98
ARG
263
A
ILE
264
n
99
ILE
264
A
VAL
265
n
100
VAL
265
A
THR
266
n
101
THR
266
A
LEU
267
n
102
LEU
267
A
ILE
268
n
103
ILE
268
A
SER
269
n
104
SER
269
A
PHE
270
n
105
PHE
270
A
GLY
271
n
106
GLY
271
A
ALA
272
n
107
ALA
272
A
PHE
273
n
108
PHE
273
A
VAL
274
n
109
VAL
274
A
ALA
275
n
110
ALA
275
A
LYS
276
n
111
LYS
276
A
HIS
277
n
112
HIS
277
A
LEU
278
n
113
LEU
278
A
LYS
279
n
114
LYS
279
A
THR
280
n
115
THR
280
A
ILE
281
n
116
ILE
281
A
ASN
282
n
117
ASN
282
A
GLN
283
n
118
GLN
283
A
GLU
284
n
119
GLU
284
A
SER
285
n
120
SER
285
A
CYS
286
n
121
CYS
286
A
ILE
287
n
122
ILE
287
A
GLU
288
n
123
GLU
288
A
PRO
289
n
124
PRO
289
A
LEU
290
n
125
LEU
290
A
ALA
291
n
126
ALA
291
A
GLU
292
n
127
GLU
292
A
SER
293
n
128
SER
293
A
ILE
294
n
129
ILE
294
A
THR
295
n
130
THR
295
A
ASP
296
n
131
ASP
296
A
VAL
297
n
132
VAL
297
A
LEU
298
n
133
LEU
298
A
VAL
299
n
134
VAL
299
A
ARG
300
n
135
ARG
300
A
THR
301
n
136
THR
301
A
LYS
302
n
137
LYS
302
A
ARG
303
n
138
ARG
303
A
ASP
304
n
139
ASP
304
A
TRP
305
n
140
TRP
305
A
LEU
306
n
141
LEU
306
A
VAL
307
n
142
VAL
307
A
LYS
308
n
143
LYS
308
A
GLN
309
n
144
GLN
309
A
ARG
310
n
145
ARG
310
A
GLY
311
n
146
GLY
311
A
TRP
312
n
147
TRP
312
A
ASP
313
n
148
ASP
313
A
GLY
314
n
149
GLY
314
A
PHE
315
n
150
PHE
315
A
VAL
316
n
151
VAL
316
A
GLU
317
n
152
GLU
317
A
PHE
318
n
153
PHE
318
A
PHE
319
n
154
PHE
319
A
HIS
320
n
155
HIS
320
A
VAL
321
n
156
VAL
321
A
GLU
322
n
157
GLU
322
A
n
158
323
A
n
159
324
A
n
160
325
A
n
161
326
A
n
162
327
A
n
1
51
B
n
2
52
B
ARG
53
n
3
ARG
53
B
PRO
54
n
4
PRO
54
B
GLU
55
n
5
GLU
55
B
ILE
56
n
6
ILE
56
B
TRP
57
n
7
TRP
57
B
ILE
58
n
8
ILE
58
B
ALA
59
n
9
ALA
59
B
GLN
60
n
10
GLN
60
B
GLU
61
n
11
GLU
61
B
ALA
62
n
12
ALA
62
B
ARG
63
n
13
ARG
63
B
ARG
64
n
14
ARG
64
B
ILE
65
n
15
ILE
65
B
GLY
66
n
16
GLY
66
B
ASP
67
n
17
ASP
67
B
GLU
68
n
18
GLU
68
B
ALA
69
n
19
ALA
69
B
ASN
70
n
20
ASN
70
B
ALA
71
n
21
ALA
71
B
TYR
72
n
22
TYR
72
B
TYR
73
n
23
TYR
73
B
ALA
74
n
24
ALA
74
B
ARG
75
n
25
ARG
75
B
n
26
76
B
author_and_software_defined_assembly
PISA
2
dimeric
2270
-96
8800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
384
G
HOH
1
A
GLY
166
A
GLY
1
1
Y
1
A
PRO
167
A
PRO
2
1
Y
1
A
LEU
168
A
LEU
3
1
Y
1
A
GLY
169
A
GLY
4
1
Y
1
A
SER
170
A
SER
5
1
Y
1
A
GLU
171
A
GLU
6
1
Y
1
A
SER
196
A
SER
31
1
Y
1
A
LYS
197
A
LYS
32
1
Y
1
A
PRO
198
A
PRO
33
1
Y
1
A
LEU
199
A
LEU
34
1
Y
1
A
GLY
200
A
GLY
35
1
Y
1
A
GLU
201
A
GLU
36
1
Y
1
A
ALA
202
A
ALA
37
1
Y
1
A
ASP
323
A
ASP
158
1
Y
1
A
LEU
324
A
LEU
159
1
Y
1
A
GLU
325
A
GLU
160
1
Y
1
A
GLY
326
A
GLY
161
1
Y
1
A
GLY
327
A
GLY
162
1
Y
1
B
ASP
51
B
ASP
1
1
Y
1
B
MET
52
B
MET
2
1
Y
1
B
ARG
76
B
ARG
26
1
Y
1
A
A
OE1
O
GLU
HOH
240
420
1.94
1
A
A
OE1
O
GLU
HOH
288
420
1.87
1_555
3_555
1
A
A
O
O
HOH
HOH
405
405
2.05
1_555
2_545
27.253
-0.47
0.00
0.00
-0.51
0.00
0.99
0.943
0.916
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24108
0.19201
0.19441
2.03
50.00
710
13365
5.0
98.71
3.474
0.099
RANDOM
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
0.178
0.167
0.80
0.80
1.40
2NL9
MAXIMUM LIKELIHOOD
MASK
2.03
50.00
120
1481
4
0
1357
0.015
0.022
1375
1.194
1.933
1849
4.209
5.000
164
34.358
22.740
73
15.074
15.000
248
18.131
15.000
17
0.086
0.200
201
0.006
0.020
1042
0.200
0.200
649
0.296
0.200
963
0.198
0.200
100
0.089
0.200
2
0.235
0.200
29
0.362
0.200
15
0.967
1.500
856
1.624
2.000
1317
2.363
3.000
602
3.658
4.500
532
0.255
0.214
2.086
49
965
1014
20
98.54
2.03
60.30
3D7V
13365
5.6
0.044
1
3.2
98.71
0.204
2.03
2.10
3.1
1357
3.1
96.1
refinement
REFMAC
5.2.0019
data collection
CrystalClear
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Crystal structure of Mcl-1 in complex with an Mcl-1 selective BH3 ligand
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
ASP
172
A
ASP
7
HELX_P
A
GLY
192
A
GLY
27
1
1
21
A
GLY
203
A
GLY
38
HELX_P
A
HIS
224
A
HIS
59
1
2
22
A
HIS
224
A
HIS
59
HELX_P
A
ASP
236
A
ASP
71
1
3
13
A
VAL
243
A
VAL
78
HELX_P
A
SER
255
A
SER
90
1
4
13
A
ASN
260
A
ASN
95
HELX_P
A
ASN
282
A
ASN
117
1
5
23
A
ILE
287
A
ILE
122
HELX_P
A
GLN
309
A
GLN
144
1
6
23
A
GLY
311
A
GLY
146
HELX_P
A
PHE
319
A
PHE
154
1
7
9
B
ARG
53
B
ARG
3
HELX_P
B
ARG
75
B
ARG
25
1
8
23
APOPTOSIS
helical bundle, amphipathic helix, Alternative splicing, Apoptosis, Cytoplasm, Developmental protein, Differentiation, Membrane, Mitochondrion, Nucleus, Phosphoprotein, Polymorphism, Transmembrane, Ubl conjugation
MCL1_MOUSE
UNP
1
152
P97287
EDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRR
MCL1_HUMAN
UNP
1
209
Q07820
ALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIE
PLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEGG
BIM_HUMAN
UNP
2
141
O43521
DMRPEIWIAQELRRIGDEFNAYYARR
152
189
3D7V
171
208
P97287
A
1
6
43
209
327
3D7V
209
327
Q07820
A
2
44
162
141
166
3D7V
51
76
O43521
B
3
1
26
1
expression tag
GLY
166
3D7V
A
P97287
UNP
1
1
expression tag
PRO
167
3D7V
A
P97287
UNP
2
1
expression tag
LEU
168
3D7V
A
P97287
UNP
3
1
expression tag
GLY
169
3D7V
A
P97287
UNP
4
1
expression tag
SER
170
3D7V
A
P97287
UNP
5
3
LEU
engineered mutation
ALA
62
3D7V
B
O43521
UNP
152
12
3
PHE
engineered mutation
ALA
69
3D7V
B
O43521
UNP
159
19
BINDING SITE FOR RESIDUE ZN A 1
A
ZN
1
Software
2
BINDING SITE FOR RESIDUE ZN A 2
A
ZN
2
Software
2
BINDING SITE FOR RESIDUE ZN A 3
A
ZN
3
Software
2
BINDING SITE FOR RESIDUE ZN A 4
A
ZN
4
Software
3
A
HIS
252
A
HIS
87
2
1_555
A
ASP
304
A
ASP
139
2
2_545
A
HIS
224
A
HIS
59
2
1_555
B
GLU
68
B
GLU
18
2
1_555
A
CYS
286
A
CYS
121
2
3_555
A
GLU
288
A
GLU
123
2
1_555
A
HIS
320
A
HIS
155
3
1_555
A
GLU
322
A
GLU
157
3
1_555
B
GLU
61
B
GLU
11
3
8_445
23
I 2 2 2