0.008621
0.000000
0.000000
0.000000
0.007385
0.000000
0.000000
0.000000
0.007186
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.000
90.000
90.000
115.998
135.416
139.164
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
UNKNOWN LIGAND
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of ketosteroid isomerase-like protein (YP_049581.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 2.40 A resolution
10.2210/pdb3d9r/pdb
pdb_00003d9r
100
1
Flat mirror (vertical focusing)
CCD
2008-03-04
MARMOSAIC 325 mm CCD
Single crystal Si(111) bent monochromator (horizontal focusing)
MAD
M
x-ray
1
0.91837
1.0
0.97879
1.0
0.97932
1.0
BL11-1
SSRL
0.91837,0.97879,0.97932
SYNCHROTRON
SSRL BEAMLINE BL11-1
14678.043
ketosteroid isomerase-like protein
4
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
UNKNOWN LIGAND
4
syn
non-polymer
92.094
GLYCEROL
4
syn
non-polymer
18.015
water
215
nat
water
no
yes
G(MSE)SKIFNEELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVL(MSE)GPGRPAAVGKDELAEVYLSVFETVGFD
(MSE)AYEIKEVVQTSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKISP
GMSKIFNEELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQ
TSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKISP
A,B,C,D
378184
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
YP_049581.1, ECA1476
29471
Pectobacterium atrosepticum
Escherichia coli
HK100
Plasmid
SpeedET
1
4.65
73.57
VAPOR DIFFUSION, SITTING DROP
4.6
2.0000M NaCl, 0.1M Acetate pH 4., NANODROP, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_struct_assembly_auth_evidence
software
software
struct_conn
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Advisory
Version format compliance
Author supporting evidence
Refinement description
Data collection
Derived calculations
Refinement description
Database references
Derived calculations
1
0
2008-07-01
1
1
2011-07-13
1
2
2017-10-25
1
3
2019-07-24
1
4
2023-02-01
_software.classification
_software.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_software.version
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2008-05-27
REL
REL
NA
SODIUM ION
UNL
UNKNOWN LIGAND
GOL
GLYCEROL
HOH
water
SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
NA
5
2
NA
NA
135
A
UNL
1
3
UNL
UNL
136
A
GOL
9
4
GOL
GOL
137
A
UNL
2
3
UNL
UNL
135
B
GOL
7
4
GOL
GOL
136
B
GOL
8
4
GOL
GOL
137
B
UNL
3
3
UNL
UNL
135
C
UNL
4
3
UNL
UNL
135
D
GOL
6
4
GOL
GOL
136
D
HOH
11
5
HOH
HOH
138
A
HOH
13
5
HOH
HOH
139
A
HOH
14
5
HOH
HOH
140
A
HOH
22
5
HOH
HOH
141
A
HOH
28
5
HOH
HOH
142
A
HOH
30
5
HOH
HOH
143
A
HOH
33
5
HOH
HOH
144
A
HOH
46
5
HOH
HOH
145
A
HOH
48
5
HOH
HOH
146
A
HOH
50
5
HOH
HOH
147
A
HOH
54
5
HOH
HOH
148
A
HOH
55
5
HOH
HOH
149
A
HOH
56
5
HOH
HOH
150
A
HOH
58
5
HOH
HOH
151
A
HOH
61
5
HOH
HOH
152
A
HOH
64
5
HOH
HOH
153
A
HOH
66
5
HOH
HOH
154
A
HOH
70
5
HOH
HOH
155
A
HOH
79
5
HOH
HOH
156
A
HOH
85
5
HOH
HOH
157
A
HOH
88
5
HOH
HOH
158
A
HOH
92
5
HOH
HOH
159
A
HOH
93
5
HOH
HOH
160
A
HOH
96
5
HOH
HOH
161
A
HOH
99
5
HOH
HOH
162
A
HOH
100
5
HOH
HOH
163
A
HOH
102
5
HOH
HOH
164
A
HOH
103
5
HOH
HOH
165
A
HOH
106
5
HOH
HOH
166
A
HOH
111
5
HOH
HOH
167
A
HOH
120
5
HOH
HOH
168
A
HOH
125
5
HOH
HOH
169
A
HOH
131
5
HOH
HOH
170
A
HOH
142
5
HOH
HOH
171
A
HOH
143
5
HOH
HOH
172
A
HOH
144
5
HOH
HOH
173
A
HOH
148
5
HOH
HOH
174
A
HOH
150
5
HOH
HOH
175
A
HOH
151
5
HOH
HOH
176
A
HOH
152
5
HOH
HOH
177
A
HOH
153
5
HOH
HOH
178
A
HOH
154
5
HOH
HOH
179
A
HOH
155
5
HOH
HOH
180
A
HOH
156
5
HOH
HOH
181
A
HOH
157
5
HOH
HOH
182
A
HOH
158
5
HOH
HOH
183
A
HOH
159
5
HOH
HOH
184
A
HOH
160
5
HOH
HOH
185
A
HOH
187
5
HOH
HOH
186
A
HOH
194
5
HOH
HOH
187
A
HOH
195
5
HOH
HOH
188
A
HOH
196
5
HOH
HOH
189
A
HOH
197
5
HOH
HOH
190
A
HOH
198
5
HOH
HOH
191
A
HOH
199
5
HOH
HOH
192
A
HOH
200
5
HOH
HOH
193
A
HOH
201
5
HOH
HOH
194
A
HOH
202
5
HOH
HOH
195
A
HOH
203
5
HOH
HOH
196
A
HOH
204
5
HOH
HOH
197
A
HOH
207
5
HOH
HOH
198
A
HOH
18
5
HOH
HOH
138
B
HOH
23
5
HOH
HOH
139
B
HOH
25
5
HOH
HOH
140
B
HOH
26
5
HOH
HOH
141
B
HOH
31
5
HOH
HOH
142
B
HOH
34
5
HOH
HOH
143
B
HOH
36
5
HOH
HOH
144
B
HOH
38
5
HOH
HOH
145
B
HOH
40
5
HOH
HOH
146
B
HOH
43
5
HOH
HOH
147
B
HOH
51
5
HOH
HOH
148
B
HOH
62
5
HOH
HOH
149
B
HOH
74
5
HOH
HOH
150
B
HOH
76
5
HOH
HOH
151
B
HOH
77
5
HOH
HOH
152
B
HOH
81
5
HOH
HOH
153
B
HOH
90
5
HOH
HOH
154
B
HOH
94
5
HOH
HOH
155
B
HOH
95
5
HOH
HOH
156
B
HOH
97
5
HOH
HOH
157
B
HOH
98
5
HOH
HOH
158
B
HOH
109
5
HOH
HOH
159
B
HOH
114
5
HOH
HOH
160
B
HOH
115
5
HOH
HOH
161
B
HOH
118
5
HOH
HOH
162
B
HOH
119
5
HOH
HOH
163
B
HOH
122
5
HOH
HOH
164
B
HOH
123
5
HOH
HOH
165
B
HOH
133
5
HOH
HOH
166
B
HOH
137
5
HOH
HOH
167
B
HOH
139
5
HOH
HOH
168
B
HOH
145
5
HOH
HOH
169
B
HOH
146
5
HOH
HOH
170
B
HOH
161
5
HOH
HOH
171
B
HOH
162
5
HOH
HOH
172
B
HOH
163
5
HOH
HOH
173
B
HOH
164
5
HOH
HOH
174
B
HOH
165
5
HOH
HOH
175
B
HOH
166
5
HOH
HOH
176
B
HOH
167
5
HOH
HOH
177
B
HOH
168
5
HOH
HOH
178
B
HOH
169
5
HOH
HOH
179
B
HOH
170
5
HOH
HOH
180
B
HOH
171
5
HOH
HOH
181
B
HOH
172
5
HOH
HOH
182
B
HOH
173
5
HOH
HOH
183
B
HOH
186
5
HOH
HOH
184
B
HOH
188
5
HOH
HOH
185
B
HOH
189
5
HOH
HOH
186
B
HOH
190
5
HOH
HOH
187
B
HOH
191
5
HOH
HOH
188
B
HOH
193
5
HOH
HOH
189
B
HOH
205
5
HOH
HOH
190
B
HOH
206
5
HOH
HOH
191
B
HOH
208
5
HOH
HOH
192
B
HOH
209
5
HOH
HOH
193
B
HOH
210
5
HOH
HOH
194
B
HOH
211
5
HOH
HOH
195
B
HOH
212
5
HOH
HOH
196
B
HOH
214
5
HOH
HOH
197
B
HOH
215
5
HOH
HOH
198
B
HOH
216
5
HOH
HOH
199
B
HOH
10
5
HOH
HOH
136
C
HOH
12
5
HOH
HOH
137
C
HOH
16
5
HOH
HOH
138
C
HOH
17
5
HOH
HOH
139
C
HOH
20
5
HOH
HOH
140
C
HOH
21
5
HOH
HOH
141
C
HOH
29
5
HOH
HOH
142
C
HOH
37
5
HOH
HOH
143
C
HOH
39
5
HOH
HOH
144
C
HOH
41
5
HOH
HOH
145
C
HOH
42
5
HOH
HOH
146
C
HOH
49
5
HOH
HOH
147
C
HOH
53
5
HOH
HOH
148
C
HOH
57
5
HOH
HOH
149
C
HOH
59
5
HOH
HOH
150
C
HOH
67
5
HOH
HOH
151
C
HOH
69
5
HOH
HOH
152
C
HOH
71
5
HOH
HOH
153
C
HOH
75
5
HOH
HOH
154
C
HOH
83
5
HOH
HOH
155
C
HOH
84
5
HOH
HOH
156
C
HOH
87
5
HOH
HOH
157
C
HOH
91
5
HOH
HOH
158
C
HOH
104
5
HOH
HOH
159
C
HOH
112
5
HOH
HOH
160
C
HOH
117
5
HOH
HOH
161
C
HOH
121
5
HOH
HOH
162
C
HOH
124
5
HOH
HOH
163
C
HOH
128
5
HOH
HOH
164
C
HOH
129
5
HOH
HOH
165
C
HOH
132
5
HOH
HOH
166
C
HOH
136
5
HOH
HOH
167
C
HOH
138
5
HOH
HOH
168
C
HOH
140
5
HOH
HOH
169
C
HOH
141
5
HOH
HOH
170
C
HOH
147
5
HOH
HOH
171
C
HOH
149
5
HOH
HOH
172
C
HOH
174
5
HOH
HOH
173
C
HOH
175
5
HOH
HOH
174
C
HOH
176
5
HOH
HOH
175
C
HOH
177
5
HOH
HOH
176
C
HOH
178
5
HOH
HOH
177
C
HOH
179
5
HOH
HOH
178
C
HOH
180
5
HOH
HOH
179
C
HOH
181
5
HOH
HOH
180
C
HOH
182
5
HOH
HOH
181
C
HOH
183
5
HOH
HOH
182
C
HOH
192
5
HOH
HOH
183
C
HOH
213
5
HOH
HOH
184
C
HOH
217
5
HOH
HOH
185
C
HOH
218
5
HOH
HOH
186
C
HOH
219
5
HOH
HOH
187
C
HOH
220
5
HOH
HOH
188
C
HOH
225
5
HOH
HOH
189
C
HOH
15
5
HOH
HOH
137
D
HOH
19
5
HOH
HOH
138
D
HOH
24
5
HOH
HOH
139
D
HOH
27
5
HOH
HOH
140
D
HOH
32
5
HOH
HOH
141
D
HOH
35
5
HOH
HOH
142
D
HOH
44
5
HOH
HOH
143
D
HOH
45
5
HOH
HOH
144
D
HOH
47
5
HOH
HOH
145
D
HOH
52
5
HOH
HOH
146
D
HOH
60
5
HOH
HOH
147
D
HOH
63
5
HOH
HOH
148
D
HOH
65
5
HOH
HOH
149
D
HOH
68
5
HOH
HOH
150
D
HOH
72
5
HOH
HOH
151
D
HOH
73
5
HOH
HOH
152
D
HOH
78
5
HOH
HOH
153
D
HOH
80
5
HOH
HOH
154
D
HOH
82
5
HOH
HOH
155
D
HOH
86
5
HOH
HOH
156
D
HOH
89
5
HOH
HOH
157
D
HOH
101
5
HOH
HOH
158
D
HOH
105
5
HOH
HOH
159
D
HOH
107
5
HOH
HOH
160
D
HOH
108
5
HOH
HOH
161
D
HOH
110
5
HOH
HOH
162
D
HOH
113
5
HOH
HOH
163
D
HOH
116
5
HOH
HOH
164
D
HOH
126
5
HOH
HOH
165
D
HOH
127
5
HOH
HOH
166
D
HOH
130
5
HOH
HOH
167
D
HOH
134
5
HOH
HOH
168
D
HOH
135
5
HOH
HOH
169
D
HOH
184
5
HOH
HOH
170
D
HOH
185
5
HOH
HOH
171
D
HOH
222
5
HOH
HOH
172
D
HOH
223
5
HOH
HOH
173
D
HOH
224
5
HOH
HOH
174
D
n
1
0
A
n
2
1
A
n
3
2
A
LYS
3
n
4
LYS
3
A
ILE
4
n
5
ILE
4
A
PHE
5
n
6
PHE
5
A
ASN
6
n
7
ASN
6
A
GLU
7
n
8
GLU
7
A
GLU
8
n
9
GLU
8
A
LEU
9
n
10
LEU
9
A
ALA
10
n
11
ALA
10
A
VAL
11
n
12
VAL
11
A
ILE
12
n
13
ILE
12
A
GLU
13
n
14
GLU
13
A
ALA
14
n
15
ALA
14
A
ALA
15
n
16
ALA
15
A
ALA
16
n
17
ALA
16
A
ILE
17
n
18
ILE
17
A
ALA
18
n
19
ALA
18
A
TYR
19
n
20
TYR
19
A
LEU
20
n
21
LEU
20
A
THR
21
n
22
THR
21
A
ALA
22
n
23
ALA
22
A
PHE
23
n
24
PHE
23
A
ASN
24
n
25
ASN
24
A
ARG
25
n
26
ARG
25
A
ALA
26
n
27
ALA
26
A
ASP
27
n
28
ASP
27
A
ILE
28
n
29
ILE
28
A
PRO
29
n
30
PRO
29
A
ALA
30
n
31
ALA
30
A
VAL
31
n
32
VAL
31
A
ILE
32
n
33
ILE
32
A
ALA
33
n
34
ALA
33
A
THR
34
n
35
THR
34
A
TYR
35
n
36
TYR
35
A
THR
36
n
37
THR
36
A
ASP
37
n
38
ASP
37
A
ASP
38
n
39
ASP
38
A
GLY
39
n
40
GLY
39
A
VAL
40
n
41
VAL
40
A
LEU
41
n
42
LEU
41
A
MSE
42
n
43
MSE
42
A
GLY
43
n
44
GLY
43
A
PRO
44
n
45
PRO
44
A
GLY
45
n
46
GLY
45
A
ARG
46
n
47
ARG
46
A
PRO
47
n
48
PRO
47
A
ALA
48
n
49
ALA
48
A
ALA
49
n
50
ALA
49
A
VAL
50
n
51
VAL
50
A
GLY
51
n
52
GLY
51
A
LYS
52
n
53
LYS
52
A
ASP
53
n
54
ASP
53
A
GLU
54
n
55
GLU
54
A
LEU
55
n
56
LEU
55
A
ALA
56
n
57
ALA
56
A
GLU
57
n
58
GLU
57
A
VAL
58
n
59
VAL
58
A
TYR
59
n
60
TYR
59
A
LEU
60
n
61
LEU
60
A
SER
61
n
62
SER
61
A
VAL
62
n
63
VAL
62
A
PHE
63
n
64
PHE
63
A
GLU
64
n
65
GLU
64
A
THR
65
n
66
THR
65
A
VAL
66
n
67
VAL
66
A
GLY
67
n
68
GLY
67
A
PHE
68
n
69
PHE
68
A
ASP
69
n
70
ASP
69
A
MSE
70
n
71
MSE
70
A
ALA
71
n
72
ALA
71
A
TYR
72
n
73
TYR
72
A
GLU
73
n
74
GLU
73
A
ILE
74
n
75
ILE
74
A
LYS
75
n
76
LYS
75
A
GLU
76
n
77
GLU
76
A
VAL
77
n
78
VAL
77
A
VAL
78
n
79
VAL
78
A
GLN
79
n
80
GLN
79
A
THR
80
n
81
THR
80
A
SER
81
n
82
SER
81
A
ALA
82
n
83
ALA
82
A
ASP
83
n
84
ASP
83
A
TRP
84
n
85
TRP
84
A
ALA
85
n
86
ALA
85
A
PHE
86
n
87
PHE
86
A
VAL
87
n
88
VAL
87
A
ARG
88
n
89
ARG
88
A
SER
89
n
90
SER
89
A
ALA
90
n
91
ALA
90
A
THR
91
n
92
THR
91
A
GLU
92
n
93
GLU
92
A
GLY
93
n
94
GLY
93
A
THR
94
n
95
THR
94
A
GLU
95
n
96
GLU
95
A
THR
96
n
97
THR
96
A
ASN
97
n
98
ASN
97
A
LYS
98
n
99
LYS
98
A
ALA
99
n
100
ALA
99
A
THR
100
n
101
THR
100
A
GLY
101
n
102
GLY
101
A
VAL
102
n
103
VAL
102
A
VAL
103
n
104
VAL
103
A
THR
104
n
105
THR
104
A
PRO
105
n
106
PRO
105
A
ALA
106
n
107
ALA
106
A
ALA
107
n
108
ALA
107
A
TYR
108
n
109
TYR
108
A
GLN
109
n
110
GLN
109
A
GLU
110
n
111
GLU
110
A
LEU
111
n
112
LEU
111
A
PHE
112
n
113
PHE
112
A
LEU
113
n
114
LEU
113
A
LEU
114
n
115
LEU
114
A
ARG
115
n
116
ARG
115
A
LYS
116
n
117
LYS
116
A
SER
117
n
118
SER
117
A
ALA
118
n
119
ALA
118
A
THR
119
n
120
THR
119
A
GLY
120
n
121
GLY
120
A
SER
121
n
122
SER
121
A
TRP
122
n
123
TRP
122
A
GLN
123
n
124
GLN
123
A
THR
124
n
125
THR
124
A
ALA
125
n
126
ALA
125
A
ARG
126
n
127
ARG
126
A
TYR
127
n
128
TYR
127
A
CYS
128
n
129
CYS
128
A
THR
129
n
130
THR
129
A
SER
130
n
131
SER
130
A
LYS
131
n
132
LYS
131
A
ILE
132
n
133
ILE
132
A
SER
133
n
134
SER
133
A
PRO
134
n
135
PRO
134
A
n
1
0
B
MSE
1
n
2
MSE
1
B
SER
2
n
3
SER
2
B
LYS
3
n
4
LYS
3
B
ILE
4
n
5
ILE
4
B
PHE
5
n
6
PHE
5
B
ASN
6
n
7
ASN
6
B
GLU
7
n
8
GLU
7
B
GLU
8
n
9
GLU
8
B
LEU
9
n
10
LEU
9
B
ALA
10
n
11
ALA
10
B
VAL
11
n
12
VAL
11
B
ILE
12
n
13
ILE
12
B
GLU
13
n
14
GLU
13
B
ALA
14
n
15
ALA
14
B
ALA
15
n
16
ALA
15
B
ALA
16
n
17
ALA
16
B
ILE
17
n
18
ILE
17
B
ALA
18
n
19
ALA
18
B
TYR
19
n
20
TYR
19
B
LEU
20
n
21
LEU
20
B
THR
21
n
22
THR
21
B
ALA
22
n
23
ALA
22
B
PHE
23
n
24
PHE
23
B
ASN
24
n
25
ASN
24
B
ARG
25
n
26
ARG
25
B
ALA
26
n
27
ALA
26
B
ASP
27
n
28
ASP
27
B
ILE
28
n
29
ILE
28
B
PRO
29
n
30
PRO
29
B
ALA
30
n
31
ALA
30
B
VAL
31
n
32
VAL
31
B
ILE
32
n
33
ILE
32
B
ALA
33
n
34
ALA
33
B
THR
34
n
35
THR
34
B
TYR
35
n
36
TYR
35
B
THR
36
n
37
THR
36
B
ASP
37
n
38
ASP
37
B
ASP
38
n
39
ASP
38
B
GLY
39
n
40
GLY
39
B
VAL
40
n
41
VAL
40
B
LEU
41
n
42
LEU
41
B
MSE
42
n
43
MSE
42
B
GLY
43
n
44
GLY
43
B
PRO
44
n
45
PRO
44
B
GLY
45
n
46
GLY
45
B
ARG
46
n
47
ARG
46
B
PRO
47
n
48
PRO
47
B
ALA
48
n
49
ALA
48
B
ALA
49
n
50
ALA
49
B
VAL
50
n
51
VAL
50
B
GLY
51
n
52
GLY
51
B
LYS
52
n
53
LYS
52
B
ASP
53
n
54
ASP
53
B
GLU
54
n
55
GLU
54
B
LEU
55
n
56
LEU
55
B
ALA
56
n
57
ALA
56
B
GLU
57
n
58
GLU
57
B
VAL
58
n
59
VAL
58
B
TYR
59
n
60
TYR
59
B
LEU
60
n
61
LEU
60
B
SER
61
n
62
SER
61
B
VAL
62
n
63
VAL
62
B
PHE
63
n
64
PHE
63
B
GLU
64
n
65
GLU
64
B
THR
65
n
66
THR
65
B
VAL
66
n
67
VAL
66
B
GLY
67
n
68
GLY
67
B
PHE
68
n
69
PHE
68
B
ASP
69
n
70
ASP
69
B
MSE
70
n
71
MSE
70
B
ALA
71
n
72
ALA
71
B
TYR
72
n
73
TYR
72
B
GLU
73
n
74
GLU
73
B
ILE
74
n
75
ILE
74
B
LYS
75
n
76
LYS
75
B
GLU
76
n
77
GLU
76
B
VAL
77
n
78
VAL
77
B
VAL
78
n
79
VAL
78
B
GLN
79
n
80
GLN
79
B
THR
80
n
81
THR
80
B
SER
81
n
82
SER
81
B
ALA
82
n
83
ALA
82
B
ASP
83
n
84
ASP
83
B
TRP
84
n
85
TRP
84
B
ALA
85
n
86
ALA
85
B
PHE
86
n
87
PHE
86
B
VAL
87
n
88
VAL
87
B
ARG
88
n
89
ARG
88
B
SER
89
n
90
SER
89
B
ALA
90
n
91
ALA
90
B
THR
91
n
92
THR
91
B
GLU
92
n
93
GLU
92
B
GLY
93
n
94
GLY
93
B
THR
94
n
95
THR
94
B
GLU
95
n
96
GLU
95
B
THR
96
n
97
THR
96
B
ASN
97
n
98
ASN
97
B
LYS
98
n
99
LYS
98
B
ALA
99
n
100
ALA
99
B
THR
100
n
101
THR
100
B
GLY
101
n
102
GLY
101
B
VAL
102
n
103
VAL
102
B
VAL
103
n
104
VAL
103
B
THR
104
n
105
THR
104
B
PRO
105
n
106
PRO
105
B
ALA
106
n
107
ALA
106
B
ALA
107
n
108
ALA
107
B
TYR
108
n
109
TYR
108
B
GLN
109
n
110
GLN
109
B
GLU
110
n
111
GLU
110
B
LEU
111
n
112
LEU
111
B
PHE
112
n
113
PHE
112
B
LEU
113
n
114
LEU
113
B
LEU
114
n
115
LEU
114
B
ARG
115
n
116
ARG
115
B
LYS
116
n
117
LYS
116
B
SER
117
n
118
SER
117
B
ALA
118
n
119
ALA
118
B
THR
119
n
120
THR
119
B
GLY
120
n
121
GLY
120
B
SER
121
n
122
SER
121
B
TRP
122
n
123
TRP
122
B
GLN
123
n
124
GLN
123
B
THR
124
n
125
THR
124
B
ALA
125
n
126
ALA
125
B
ARG
126
n
127
ARG
126
B
TYR
127
n
128
TYR
127
B
CYS
128
n
129
CYS
128
B
THR
129
n
130
THR
129
B
SER
130
n
131
SER
130
B
LYS
131
n
132
LYS
131
B
ILE
132
n
133
ILE
132
B
SER
133
n
134
SER
133
B
PRO
134
n
135
PRO
134
B
n
1
0
C
MSE
1
n
2
MSE
1
C
SER
2
n
3
SER
2
C
LYS
3
n
4
LYS
3
C
ILE
4
n
5
ILE
4
C
PHE
5
n
6
PHE
5
C
ASN
6
n
7
ASN
6
C
GLU
7
n
8
GLU
7
C
GLU
8
n
9
GLU
8
C
LEU
9
n
10
LEU
9
C
ALA
10
n
11
ALA
10
C
VAL
11
n
12
VAL
11
C
ILE
12
n
13
ILE
12
C
GLU
13
n
14
GLU
13
C
ALA
14
n
15
ALA
14
C
ALA
15
n
16
ALA
15
C
ALA
16
n
17
ALA
16
C
ILE
17
n
18
ILE
17
C
ALA
18
n
19
ALA
18
C
TYR
19
n
20
TYR
19
C
LEU
20
n
21
LEU
20
C
THR
21
n
22
THR
21
C
ALA
22
n
23
ALA
22
C
PHE
23
n
24
PHE
23
C
ASN
24
n
25
ASN
24
C
ARG
25
n
26
ARG
25
C
ALA
26
n
27
ALA
26
C
ASP
27
n
28
ASP
27
C
ILE
28
n
29
ILE
28
C
PRO
29
n
30
PRO
29
C
ALA
30
n
31
ALA
30
C
VAL
31
n
32
VAL
31
C
ILE
32
n
33
ILE
32
C
ALA
33
n
34
ALA
33
C
THR
34
n
35
THR
34
C
TYR
35
n
36
TYR
35
C
THR
36
n
37
THR
36
C
ASP
37
n
38
ASP
37
C
ASP
38
n
39
ASP
38
C
GLY
39
n
40
GLY
39
C
VAL
40
n
41
VAL
40
C
LEU
41
n
42
LEU
41
C
MSE
42
n
43
MSE
42
C
GLY
43
n
44
GLY
43
C
PRO
44
n
45
PRO
44
C
GLY
45
n
46
GLY
45
C
ARG
46
n
47
ARG
46
C
PRO
47
n
48
PRO
47
C
ALA
48
n
49
ALA
48
C
ALA
49
n
50
ALA
49
C
VAL
50
n
51
VAL
50
C
GLY
51
n
52
GLY
51
C
LYS
52
n
53
LYS
52
C
ASP
53
n
54
ASP
53
C
GLU
54
n
55
GLU
54
C
LEU
55
n
56
LEU
55
C
ALA
56
n
57
ALA
56
C
GLU
57
n
58
GLU
57
C
VAL
58
n
59
VAL
58
C
TYR
59
n
60
TYR
59
C
LEU
60
n
61
LEU
60
C
SER
61
n
62
SER
61
C
VAL
62
n
63
VAL
62
C
PHE
63
n
64
PHE
63
C
GLU
64
n
65
GLU
64
C
THR
65
n
66
THR
65
C
VAL
66
n
67
VAL
66
C
GLY
67
n
68
GLY
67
C
PHE
68
n
69
PHE
68
C
ASP
69
n
70
ASP
69
C
MSE
70
n
71
MSE
70
C
ALA
71
n
72
ALA
71
C
TYR
72
n
73
TYR
72
C
GLU
73
n
74
GLU
73
C
ILE
74
n
75
ILE
74
C
LYS
75
n
76
LYS
75
C
GLU
76
n
77
GLU
76
C
VAL
77
n
78
VAL
77
C
VAL
78
n
79
VAL
78
C
GLN
79
n
80
GLN
79
C
THR
80
n
81
THR
80
C
SER
81
n
82
SER
81
C
ALA
82
n
83
ALA
82
C
ASP
83
n
84
ASP
83
C
TRP
84
n
85
TRP
84
C
ALA
85
n
86
ALA
85
C
PHE
86
n
87
PHE
86
C
VAL
87
n
88
VAL
87
C
ARG
88
n
89
ARG
88
C
SER
89
n
90
SER
89
C
ALA
90
n
91
ALA
90
C
THR
91
n
92
THR
91
C
GLU
92
n
93
GLU
92
C
GLY
93
n
94
GLY
93
C
THR
94
n
95
THR
94
C
GLU
95
n
96
GLU
95
C
THR
96
n
97
THR
96
C
ASN
97
n
98
ASN
97
C
LYS
98
n
99
LYS
98
C
ALA
99
n
100
ALA
99
C
THR
100
n
101
THR
100
C
GLY
101
n
102
GLY
101
C
VAL
102
n
103
VAL
102
C
VAL
103
n
104
VAL
103
C
THR
104
n
105
THR
104
C
PRO
105
n
106
PRO
105
C
ALA
106
n
107
ALA
106
C
ALA
107
n
108
ALA
107
C
TYR
108
n
109
TYR
108
C
GLN
109
n
110
GLN
109
C
GLU
110
n
111
GLU
110
C
LEU
111
n
112
LEU
111
C
PHE
112
n
113
PHE
112
C
LEU
113
n
114
LEU
113
C
LEU
114
n
115
LEU
114
C
ARG
115
n
116
ARG
115
C
LYS
116
n
117
LYS
116
C
SER
117
n
118
SER
117
C
ALA
118
n
119
ALA
118
C
THR
119
n
120
THR
119
C
GLY
120
n
121
GLY
120
C
SER
121
n
122
SER
121
C
TRP
122
n
123
TRP
122
C
GLN
123
n
124
GLN
123
C
THR
124
n
125
THR
124
C
ALA
125
n
126
ALA
125
C
ARG
126
n
127
ARG
126
C
TYR
127
n
128
TYR
127
C
CYS
128
n
129
CYS
128
C
THR
129
n
130
THR
129
C
SER
130
n
131
SER
130
C
LYS
131
n
132
LYS
131
C
ILE
132
n
133
ILE
132
C
SER
133
n
134
SER
133
C
PRO
134
n
135
PRO
134
C
n
1
0
D
n
2
1
D
n
3
2
D
n
4
3
D
n
5
4
D
PHE
5
n
6
PHE
5
D
ASN
6
n
7
ASN
6
D
GLU
7
n
8
GLU
7
D
GLU
8
n
9
GLU
8
D
LEU
9
n
10
LEU
9
D
ALA
10
n
11
ALA
10
D
VAL
11
n
12
VAL
11
D
ILE
12
n
13
ILE
12
D
GLU
13
n
14
GLU
13
D
ALA
14
n
15
ALA
14
D
ALA
15
n
16
ALA
15
D
ALA
16
n
17
ALA
16
D
ILE
17
n
18
ILE
17
D
ALA
18
n
19
ALA
18
D
TYR
19
n
20
TYR
19
D
LEU
20
n
21
LEU
20
D
THR
21
n
22
THR
21
D
ALA
22
n
23
ALA
22
D
PHE
23
n
24
PHE
23
D
ASN
24
n
25
ASN
24
D
ARG
25
n
26
ARG
25
D
ALA
26
n
27
ALA
26
D
ASP
27
n
28
ASP
27
D
ILE
28
n
29
ILE
28
D
PRO
29
n
30
PRO
29
D
ALA
30
n
31
ALA
30
D
VAL
31
n
32
VAL
31
D
ILE
32
n
33
ILE
32
D
ALA
33
n
34
ALA
33
D
THR
34
n
35
THR
34
D
TYR
35
n
36
TYR
35
D
THR
36
n
37
THR
36
D
ASP
37
n
38
ASP
37
D
ASP
38
n
39
ASP
38
D
GLY
39
n
40
GLY
39
D
VAL
40
n
41
VAL
40
D
LEU
41
n
42
LEU
41
D
MSE
42
n
43
MSE
42
D
GLY
43
n
44
GLY
43
D
PRO
44
n
45
PRO
44
D
GLY
45
n
46
GLY
45
D
ARG
46
n
47
ARG
46
D
PRO
47
n
48
PRO
47
D
ALA
48
n
49
ALA
48
D
ALA
49
n
50
ALA
49
D
VAL
50
n
51
VAL
50
D
GLY
51
n
52
GLY
51
D
LYS
52
n
53
LYS
52
D
ASP
53
n
54
ASP
53
D
GLU
54
n
55
GLU
54
D
LEU
55
n
56
LEU
55
D
ALA
56
n
57
ALA
56
D
GLU
57
n
58
GLU
57
D
VAL
58
n
59
VAL
58
D
TYR
59
n
60
TYR
59
D
LEU
60
n
61
LEU
60
D
SER
61
n
62
SER
61
D
VAL
62
n
63
VAL
62
D
PHE
63
n
64
PHE
63
D
GLU
64
n
65
GLU
64
D
THR
65
n
66
THR
65
D
VAL
66
n
67
VAL
66
D
GLY
67
n
68
GLY
67
D
PHE
68
n
69
PHE
68
D
ASP
69
n
70
ASP
69
D
MSE
70
n
71
MSE
70
D
ALA
71
n
72
ALA
71
D
TYR
72
n
73
TYR
72
D
GLU
73
n
74
GLU
73
D
ILE
74
n
75
ILE
74
D
LYS
75
n
76
LYS
75
D
GLU
76
n
77
GLU
76
D
VAL
77
n
78
VAL
77
D
VAL
78
n
79
VAL
78
D
GLN
79
n
80
GLN
79
D
THR
80
n
81
THR
80
D
SER
81
n
82
SER
81
D
ALA
82
n
83
ALA
82
D
ASP
83
n
84
ASP
83
D
TRP
84
n
85
TRP
84
D
ALA
85
n
86
ALA
85
D
PHE
86
n
87
PHE
86
D
VAL
87
n
88
VAL
87
D
ARG
88
n
89
ARG
88
D
SER
89
n
90
SER
89
D
ALA
90
n
91
ALA
90
D
THR
91
n
92
THR
91
D
GLU
92
n
93
GLU
92
D
GLY
93
n
94
GLY
93
D
THR
94
n
95
THR
94
D
GLU
95
n
96
GLU
95
D
THR
96
n
97
THR
96
D
ASN
97
n
98
ASN
97
D
LYS
98
n
99
LYS
98
D
ALA
99
n
100
ALA
99
D
THR
100
n
101
THR
100
D
GLY
101
n
102
GLY
101
D
VAL
102
n
103
VAL
102
D
VAL
103
n
104
VAL
103
D
THR
104
n
105
THR
104
D
PRO
105
n
106
PRO
105
D
ALA
106
n
107
ALA
106
D
ALA
107
n
108
ALA
107
D
TYR
108
n
109
TYR
108
D
GLN
109
n
110
GLN
109
D
GLU
110
n
111
GLU
110
D
LEU
111
n
112
LEU
111
D
PHE
112
n
113
PHE
112
D
LEU
113
n
114
LEU
113
D
LEU
114
n
115
LEU
114
D
ARG
115
n
116
ARG
115
D
LYS
116
n
117
LYS
116
D
SER
117
n
118
SER
117
D
ALA
118
n
119
ALA
118
D
THR
119
n
120
THR
119
D
GLY
120
n
121
GLY
120
D
SER
121
n
122
SER
121
D
TRP
122
n
123
TRP
122
D
GLN
123
n
124
GLN
123
D
THR
124
n
125
THR
124
D
ALA
125
n
126
ALA
125
D
ARG
126
n
127
ARG
126
D
TYR
127
n
128
TYR
127
D
CYS
128
n
129
CYS
128
D
THR
129
n
130
THR
129
D
SER
130
n
131
SER
130
D
LYS
131
n
132
LYS
131
D
ILE
132
n
133
ILE
132
D
SER
133
n
134
SER
133
D
PRO
134
n
135
PRO
134
D
4.2026
0.5046
1.2448
1.8443
0.3427
4.0078
0.1757
0.2192
-0.1044
-0.0897
-0.0668
0.2072
0.0318
-0.0804
-0.1088
-0.0986
-0.0430
-0.0013
-0.1551
-0.0755
-0.2044
refined
15.8714
39.4144
-23.5833
X-RAY DIFFRACTION
2.8925
1.1044
0.7444
4.1976
0.4154
2.8971
-0.1854
0.1196
0.3595
-0.0874
0.2236
0.3303
-0.1730
0.1190
-0.0382
-0.1361
-0.0595
-0.0606
-0.1656
0.0318
-0.1665
refined
26.5783
52.1112
-10.8400
X-RAY DIFFRACTION
3.2140
-0.4176
0.7701
3.6815
-0.0522
3.3655
-0.1600
-0.0899
0.4192
0.0366
0.1874
-0.2283
-0.1086
-0.0884
-0.0274
-0.1637
0.0583
-0.0374
-0.2021
-0.0128
-0.1645
refined
34.8095
52.2965
10.9275
X-RAY DIFFRACTION
5.0706
-0.1236
-0.0724
2.5724
-0.7613
3.5358
0.0985
-0.4531
-0.0062
0.0039
-0.1541
-0.3303
0.1254
0.2618
0.0556
-0.1360
0.0812
0.0110
-0.0798
0.0916
-0.2033
refined
45.6974
40.2395
23.5278
X-RAY DIFFRACTION
A
3
A
4
A
134
A
135
X-RAY DIFFRACTION
1
B
1
B
2
B
134
B
135
X-RAY DIFFRACTION
2
C
1
C
2
C
134
C
135
X-RAY DIFFRACTION
3
D
5
D
6
D
134
D
135
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
gel filtration
3600
-31
12260
3320
-20
12200
A
ASN
24
A
O
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
ASN
24
A
OD1
ASN
25
1_555
84.2
A
ASN
24
A
O
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
PHE
68
A
O
PHE
69
1_555
165.2
A
ASN
24
A
OD1
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
PHE
68
A
O
PHE
69
1_555
101.2
A
ASN
24
A
O
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
159
N
O
HOH
1_555
80.4
A
ASN
24
A
OD1
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
159
N
O
HOH
1_555
96.0
A
PHE
68
A
O
PHE
69
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
159
N
O
HOH
1_555
85.3
A
ASN
24
A
O
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
176
N
O
HOH
1_555
98.6
A
ASN
24
A
OD1
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
176
N
O
HOH
1_555
92.4
A
PHE
68
A
O
PHE
69
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
176
N
O
HOH
1_555
95.0
A
HOH
159
N
O
HOH
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
176
N
O
HOH
1_555
171.4
A
ASN
24
A
O
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
190
N
O
HOH
1_555
84.6
A
ASN
24
A
OD1
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
190
N
O
HOH
1_555
166.0
A
PHE
68
A
O
PHE
69
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
190
N
O
HOH
1_555
91.7
A
HOH
159
N
O
HOH
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
190
N
O
HOH
1_555
90.3
A
HOH
176
N
O
HOH
1_555
A
NA
135
E
NA
NA
1_555
A
HOH
190
N
O
HOH
1_555
81.2
A
MSE
42
SELENOMETHIONINE
A
MSE
43
MET
A
MSE
70
SELENOMETHIONINE
A
MSE
71
MET
B
MSE
1
SELENOMETHIONINE
B
MSE
2
MET
B
MSE
42
SELENOMETHIONINE
B
MSE
43
MET
B
MSE
70
SELENOMETHIONINE
B
MSE
71
MET
C
MSE
1
SELENOMETHIONINE
C
MSE
2
MET
C
MSE
42
SELENOMETHIONINE
C
MSE
43
MET
C
MSE
70
SELENOMETHIONINE
C
MSE
71
MET
D
MSE
42
SELENOMETHIONINE
D
MSE
43
MET
D
MSE
70
SELENOMETHIONINE
D
MSE
71
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
49
A
O
ALA
50
A
N
LEU
41
A
N
LEU
42
A
N
MSE
42
A
N
MSE
43
A
O
TYR
127
A
O
TYR
128
A
O
ALA
125
A
O
ALA
126
A
N
LEU
113
A
N
LEU
114
A
O
THR
104
A
O
THR
105
A
N
GLU
95
A
N
GLU
96
A
O
PHE
86
A
O
PHE
87
A
N
VAL
78
A
N
VAL
79
B
N
LYS
3
B
N
LYS
4
C
O
GLN
79
C
O
GLN
80
C
N
VAL
78
C
N
VAL
79
C
O
PHE
86
C
O
PHE
87
C
N
GLU
95
C
N
GLU
96
C
O
THR
104
C
O
THR
105
C
N
LEU
113
C
N
LEU
114
C
O
ARG
126
C
O
ARG
127
C
O
THR
124
C
O
THR
125
C
N
THR
36
C
N
THR
37
C
N
LEU
41
C
N
LEU
42
C
O
ALA
49
C
O
ALA
50
B
O
ALA
49
B
O
ALA
50
B
N
LEU
41
B
N
LEU
42
B
N
MSE
42
B
N
MSE
43
B
O
THR
129
B
O
THR
130
B
O
ALA
125
B
O
ALA
126
B
N
LEU
113
B
N
LEU
114
B
O
ALA
106
B
O
ALA
107
B
N
GLY
93
B
N
GLY
94
B
O
ARG
88
B
O
ARG
89
B
N
LYS
75
B
N
LYS
76
B
N
GLN
79
B
N
GLN
80
C
O
LYS
3
C
O
LYS
4
D
O
ALA
49
D
O
ALA
50
D
N
LEU
41
D
N
LEU
42
D
N
MSE
42
D
N
MSE
43
D
O
THR
129
D
O
THR
130
D
O
ALA
125
D
O
ALA
126
D
N
LEU
113
D
N
LEU
114
D
O
THR
104
D
O
THR
105
D
N
GLU
95
D
N
GLU
96
D
O
PHE
86
D
O
PHE
87
D
N
VAL
78
D
N
VAL
79
1
A
CG
LYS
3
A
CG
LYS
4
1
Y
1
A
CD
LYS
3
A
CD
LYS
4
1
Y
1
A
CE
LYS
3
A
CE
LYS
4
1
Y
1
A
NZ
LYS
3
A
NZ
LYS
4
1
Y
1
B
CB
PHE
5
B
CB
PHE
6
1
Y
1
B
CG
PHE
5
B
CG
PHE
6
1
Y
1
B
CD1
PHE
5
B
CD1
PHE
6
1
Y
1
B
CD2
PHE
5
B
CD2
PHE
6
1
Y
1
B
CE1
PHE
5
B
CE1
PHE
6
1
Y
1
B
CE2
PHE
5
B
CE2
PHE
6
1
Y
1
B
CZ
PHE
5
B
CZ
PHE
6
1
Y
1
B
CG
GLU
57
B
CG
GLU
58
1
Y
1
B
CD
GLU
57
B
CD
GLU
58
1
Y
1
B
OE1
GLU
57
B
OE1
GLU
58
1
Y
1
B
OE2
GLU
57
B
OE2
GLU
58
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
SER
2
A
SER
3
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
C
GLY
0
C
GLY
1
1
Y
1
D
GLY
0
D
GLY
1
1
Y
1
D
MSE
1
D
MSE
2
1
Y
1
D
SER
2
D
SER
3
1
Y
1
D
LYS
3
D
LYS
4
1
Y
1
D
ILE
4
D
ILE
5
1
Y
1
D
D
SER
PRO
133
134
-136.09
1
-13.89
2.20
98.90
85.01
B
B
B
CG
SE
CE
MSE
MSE
MSE
1
1
1
N
1
B
B
SE
CE
MSE
MSE
1
1
0.686
0.059
1.950
2.636
N
1
B
ASN
6
-37.38
128.42
38.537
1.280
0.000
0.000
0.490
0.000
-1.770
0.968
0.950
1. HYDROGENS HAVE BEEN ADDED IN THE
RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS
ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR
SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE
OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO
0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO
PARTIAL S-MET INCORPORATION. 4. AN UNKNOWN LIGAND (UNL) WAS
MODELED AT THE PUTATIVE ACTIVE SITE ON EACH SUBUNIT IN THE
CRYSTALLOGRAPHIC ASYMMETRIC UNIT. 5. GLYCEROL MOLECULES USED
AS A CRYOPROTECTANT WERE MODELED INTO THE STRUCTURE.
UNEXPLAINED ELECTRON DENSITY AT THE N-TERMINAL REGION OF
SUBUNIT B WAS NOT MODELED.
0.219
0.182
0.184
2.400
29.841
2140
42374
5.100
98.300
10.661
0.129
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.195
0.176
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
2.400
29.841
215
4283
52
0
4016
0.017
0.022
4186
0.002
0.020
2719
1.370
1.959
5719
0.903
3.000
6659
6.489
5.000
552
30.878
24.142
169
14.934
15.000
655
14.456
15.000
22
0.081
0.200
669
0.005
0.020
4720
0.001
0.020
858
0.196
0.200
764
0.193
0.200
2756
0.179
0.200
1981
0.084
0.200
2330
0.224
0.200
243
0.146
0.200
3
0.233
0.200
6
0.165
0.200
19
0.033
0.200
2
1.328
3.000
2676
0.408
3.000
1081
2.456
5.000
4316
4.256
8.000
1570
6.057
11.000
1390
1
A
1
1553
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.730
0.500
2
B
1
1553
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.360
0.500
3
C
1
1553
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.370
0.500
4
D
1
1553
X-RAY DIFFRACTION
MEDIUM POSITIONAL
0.540
0.500
1
A
1
1553
X-RAY DIFFRACTION
MEDIUM THERMAL
0.670
2.000
2
B
1
1553
X-RAY DIFFRACTION
MEDIUM THERMAL
0.670
2.000
3
C
1
1553
X-RAY DIFFRACTION
MEDIUM THERMAL
0.680
2.000
4
D
1
1553
X-RAY DIFFRACTION
MEDIUM THERMAL
0.730
2.000
0.344
0.280
2.462
156
2959
3115
20
99.680
54.294
2.40
29.841
3D9R
42374
0.078
0.078
1
6.900
3.700
98.700
0.658
2.40
2.46
1.2
11641
3119
0.658
1
3.70
99.80
0.569
2.46
2.53
1.3
11354
3052
0.569
1
3.70
99.60
0.463
2.53
2.60
1.7
11190
2989
0.463
1
3.70
99.70
0.359
2.60
2.68
2.1
10705
2879
0.359
1
3.70
99.60
0.271
2.68
2.77
2.8
10463
2795
0.271
1
3.70
99.30
0.224
2.77
2.87
3.4
10164
2715
0.224
1
3.70
99.50
0.185
2.87
2.98
4.1
9838
2620
0.185
1
3.80
99.10
0.132
2.98
3.10
5.7
9345
2500
0.132
1
3.70
99.40
0.101
3.10
3.24
7.1
9112
2430
0.101
1
3.70
99.00
0.084
3.24
3.39
8.1
8641
2293
0.084
1
3.80
99.10
0.073
3.39
3.58
8.6
8272
2195
0.073
1
3.80
98.80
0.065
3.58
3.79
8.6
7644
2039
0.065
1
3.70
98.40
0.062
3.79
4.06
9.2
7444
1971
0.062
1
3.80
98.30
0.053
4.06
4.38
10.4
6771
1789
0.053
1
3.80
97.70
0.043
4.38
4.80
12.2
6281
1660
0.043
1
3.80
97.40
0.037
4.80
5.37
13.8
5728
1510
0.037
1
3.80
97.20
0.046
5.37
6.20
12.1
4977
1324
0.046
1
3.80
97.00
0.051
6.20
7.59
10.2
4273
1139
0.051
1
3.80
97.10
0.038
7.59
10.73
14.7
3252
876
0.038
1
3.70
95.50
0.042
10.73
29.84
9.5
1687
479
0.042
1
3.50
90.40
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
5.2.0019
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
package
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.004
data reduction
MOSFLM
Crystal structure of ketosteroid isomerase-like protein (YP_049581.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 2.40 A resolution
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
4
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
AUTHORS STATE THAT SIZE EXCLUSION CHROMATOGRAPHY INDICATES THAT THE DIMER IS A SIGNIFICANT OLIGOMERIZATION STATE.
A
GLU
7
A
GLU
8
HELX_P
A
ARG
25
A
ARG
26
1
1
19
A
ASP
27
A
ASP
28
HELX_P
A
THR
34
A
THR
35
1
2
8
A
GLY
51
A
GLY
52
HELX_P
A
THR
65
A
THR
66
1
3
15
B
ASN
6
B
ASN
7
HELX_P
B
ARG
25
B
ARG
26
1
4
20
B
ASP
27
B
ASP
28
HELX_P
B
THR
34
B
THR
35
1
5
8
B
GLY
51
B
GLY
52
HELX_P
B
THR
65
B
THR
66
1
6
15
C
ASN
6
C
ASN
7
HELX_P
C
ARG
25
C
ARG
26
1
7
20
C
ASP
27
C
ASP
28
HELX_P
C
THR
34
C
THR
35
1
8
8
C
GLY
51
C
GLY
52
HELX_P
C
THR
65
C
THR
66
1
9
15
D
GLU
8
D
GLU
9
HELX_P
D
ARG
25
D
ARG
26
1
10
18
D
ASP
27
D
ASP
28
HELX_P
D
THR
34
D
THR
35
1
11
8
D
GLY
51
D
GLY
52
HELX_P
D
THR
65
D
THR
66
1
12
15
covale
1.329
both
A
LEU
41
A
C
LEU
42
1_555
A
MSE
42
A
N
MSE
43
1_555
covale
1.330
both
A
MSE
42
A
C
MSE
43
1_555
A
GLY
43
A
N
GLY
44
1_555
covale
1.328
both
A
ASP
69
A
C
ASP
70
1_555
A
MSE
70
A
N
MSE
71
1_555
covale
1.332
both
A
MSE
70
A
C
MSE
71
1_555
A
ALA
71
A
N
ALA
72
1_555
covale
1.336
both
B
MSE
1
B
C
MSE
2
1_555
B
SER
2
B
N
SER
3
1_555
covale
1.323
both
B
LEU
41
B
C
LEU
42
1_555
B
MSE
42
B
N
MSE
43
1_555
covale
1.325
both
B
MSE
42
B
C
MSE
43
1_555
B
GLY
43
B
N
GLY
44
1_555
covale
1.333
both
B
ASP
69
B
C
ASP
70
1_555
B
MSE
70
B
N
MSE
71
1_555
covale
1.333
both
B
MSE
70
B
C
MSE
71
1_555
B
ALA
71
B
N
ALA
72
1_555
covale
1.338
both
C
MSE
1
C
C
MSE
2
1_555
C
SER
2
C
N
SER
3
1_555
covale
1.322
both
C
LEU
41
C
C
LEU
42
1_555
C
MSE
42
C
N
MSE
43
1_555
covale
1.325
both
C
MSE
42
C
C
MSE
43
1_555
C
GLY
43
C
N
GLY
44
1_555
covale
1.332
both
C
ASP
69
C
C
ASP
70
1_555
C
MSE
70
C
N
MSE
71
1_555
covale
1.339
both
C
MSE
70
C
C
MSE
71
1_555
C
ALA
71
C
N
ALA
72
1_555
covale
1.328
both
D
LEU
41
D
C
LEU
42
1_555
D
MSE
42
D
N
MSE
43
1_555
covale
1.330
both
D
MSE
42
D
C
MSE
43
1_555
D
GLY
43
D
N
GLY
44
1_555
covale
1.333
both
D
ASP
69
D
C
ASP
70
1_555
D
MSE
70
D
N
MSE
71
1_555
covale
1.336
both
D
MSE
70
D
C
MSE
71
1_555
D
ALA
71
D
N
ALA
72
1_555
metalc
2.254
A
ASN
24
A
O
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
metalc
2.792
A
ASN
24
A
OD1
ASN
25
1_555
A
NA
135
E
NA
NA
1_555
metalc
2.258
A
PHE
68
A
O
PHE
69
1_555
A
NA
135
E
NA
NA
1_555
metalc
2.654
A
NA
135
E
NA
NA
1_555
A
HOH
159
N
O
HOH
1_555
metalc
2.617
A
NA
135
E
NA
NA
1_555
A
HOH
176
N
O
HOH
1_555
metalc
2.281
A
NA
135
E
NA
NA
1_555
A
HOH
190
N
O
HOH
1_555
ISOMERASE
YP_049581.1, ketosteroid isomerase-like protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, ISOMERASE
A
SER
133
A
SER
134
1
A
PRO
134
A
PRO
135
-7.80
B
SER
133
B
SER
134
1
B
PRO
134
B
PRO
135
5.08
C
SER
133
C
SER
134
1
C
PRO
134
C
PRO
135
0.15
A
B
C
D
A
1
A
1
A
134
A
134
4
B
1
B
1
B
134
B
134
4
C
1
C
1
C
134
C
134
4
D
1
D
1
D
134
D
134
4
Q6D750_ERWCT
UNP
1
1
Q6D750
MSKIFNEELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT
SADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKISP
1
134
3D9R
1
134
Q6D750
A
1
2
135
1
134
3D9R
1
134
Q6D750
B
1
2
135
1
134
3D9R
1
134
Q6D750
C
1
2
135
1
134
3D9R
1
134
Q6D750
D
1
2
135
1
expression tag
GLY
0
3D9R
A
Q6D750
UNP
1
2
expression tag
GLY
0
3D9R
B
Q6D750
UNP
1
3
expression tag
GLY
0
3D9R
C
Q6D750
UNP
1
4
expression tag
GLY
0
3D9R
D
Q6D750
UNP
1
6
7
7
6
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
49
A
ALA
50
A
VAL
50
A
VAL
51
A
TYR
35
A
TYR
36
A
MSE
42
A
MSE
43
A
TRP
122
A
TRP
123
A
SER
133
A
SER
134
A
VAL
103
A
VAL
104
A
LYS
116
A
LYS
117
A
TRP
84
A
TRP
85
A
ASN
97
A
ASN
98
A
VAL
66
A
VAL
67
A
SER
81
A
SER
82
B
LYS
3
B
LYS
4
B
ILE
4
B
ILE
5
C
VAL
66
C
VAL
67
C
SER
81
C
SER
82
C
TRP
84
C
TRP
85
C
ASN
97
C
ASN
98
C
VAL
103
C
VAL
104
C
LYS
116
C
LYS
117
C
TRP
122
C
TRP
123
C
SER
133
C
SER
134
C
TYR
35
C
TYR
36
C
MSE
42
C
MSE
43
C
ALA
49
C
ALA
50
C
VAL
50
C
VAL
51
B
ALA
49
B
ALA
50
B
VAL
50
B
VAL
51
B
TYR
35
B
TYR
36
B
MSE
42
B
MSE
43
B
TRP
122
B
TRP
123
B
SER
133
B
SER
134
B
VAL
103
B
VAL
104
B
LYS
116
B
LYS
117
B
TRP
84
B
TRP
85
B
ASN
97
B
ASN
98
B
VAL
66
B
VAL
67
B
SER
81
B
SER
82
C
LYS
3
C
LYS
4
C
ILE
4
C
ILE
5
D
ALA
49
D
ALA
50
D
VAL
50
D
VAL
51
D
TYR
35
D
TYR
36
D
MSE
42
D
MSE
43
D
TRP
122
D
TRP
123
D
SER
133
D
SER
134
D
VAL
103
D
VAL
104
D
LYS
116
D
LYS
117
D
TRP
84
D
TRP
85
D
ASN
97
D
ASN
98
D
VAL
66
D
VAL
67
D
SER
81
D
SER
82
BINDING SITE FOR RESIDUE NA A 135
A
NA
135
Software
5
BINDING SITE FOR RESIDUE UNL A 136
A
UNL
136
Software
6
BINDING SITE FOR RESIDUE UNL B 135
B
UNL
135
Software
6
BINDING SITE FOR RESIDUE UNL C 135
C
UNL
135
Software
6
BINDING SITE FOR RESIDUE UNL D 135
D
UNL
135
Software
7
BINDING SITE FOR RESIDUE GOL D 136
D
GOL
136
Software
6
BINDING SITE FOR RESIDUE GOL B 136
B
GOL
136
Software
3
BINDING SITE FOR RESIDUE GOL B 137
B
GOL
137
Software
4
BINDING SITE FOR RESIDUE GOL A 137
A
GOL
137
Software
5
A
ASN
24
A
ASN
25
5
1_555
A
PHE
68
A
PHE
69
5
1_555
A
HOH
159
N
HOH
5
1_555
A
HOH
176
N
HOH
5
1_555
A
HOH
190
N
HOH
5
1_555
A
TYR
19
A
TYR
20
6
1_555
A
PHE
23
A
PHE
24
6
1_555
A
THR
91
A
THR
92
6
1_555
A
GLU
110
A
GLU
111
6
1_555
A
TYR
127
A
TYR
128
6
1_555
A
THR
129
A
THR
130
6
1_555
B
TYR
19
B
TYR
20
6
1_555
B
THR
91
B
THR
92
6
1_555
B
GLU
110
B
GLU
111
6
1_555
B
TYR
127
B
TYR
128
6
1_555
B
THR
129
B
THR
130
6
1_555
B
HOH
189
O
HOH
6
1_555
C
TYR
19
C
TYR
20
6
1_555
C
PHE
23
C
PHE
24
6
1_555
C
THR
91
C
THR
92
6
1_555
C
GLU
110
C
GLU
111
6
1_555
C
TYR
127
C
TYR
128
6
1_555
C
THR
129
C
THR
130
6
1_555
D
TYR
19
D
TYR
20
7
1_555
D
PHE
23
D
PHE
24
7
1_555
D
THR
91
D
THR
92
7
1_555
D
GLU
110
D
GLU
111
7
1_555
D
TYR
127
D
TYR
128
7
1_555
D
THR
129
D
THR
130
7
1_555
D
HOH
165
Q
HOH
7
1_555
B
SER
2
B
SER
3
6
1_555
B
ILE
4
B
ILE
5
6
1_555
D
THR
36
D
THR
37
6
1_555
D
ASP
38
D
ASP
39
6
1_555
D
ARG
115
D
ARG
116
6
1_555
D
ARG
126
D
ARG
127
6
1_555
B
ARG
88
B
ARG
89
3
1_555
B
HOH
188
O
HOH
3
1_555
B
HOH
197
O
HOH
3
1_555
B
LYS
3
B
LYS
4
4
1_555
B
HOH
186
O
HOH
4
1_555
C
SER
81
C
SER
82
4
1_555
C
ALA
82
C
ALA
83
4
1_555
A
ASP
38
A
ASP
39
5
1_555
A
ARG
115
A
ARG
116
5
1_555
A
ALA
125
A
ALA
126
5
1_555
A
ARG
126
A
ARG
127
5
1_555
C
SER
2
C
SER
3
5
1_555
20
C 2 2 21