0.008621 0.000000 0.000000 0.000000 0.007385 0.000000 0.000000 0.000000 0.007186 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.000 90.000 90.000 115.998 135.416 139.164 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN LIGAND non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of ketosteroid isomerase-like protein (YP_049581.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 2.40 A resolution 10.2210/pdb3d9r/pdb pdb_00003d9r 100 1 Flat mirror (vertical focusing) CCD 2008-03-04 MARMOSAIC 325 mm CCD Single crystal Si(111) bent monochromator (horizontal focusing) MAD M x-ray 1 0.91837 1.0 0.97879 1.0 0.97932 1.0 BL11-1 SSRL 0.91837,0.97879,0.97932 SYNCHROTRON SSRL BEAMLINE BL11-1 14678.043 ketosteroid isomerase-like protein 4 man polymer 22.990 SODIUM ION 1 syn non-polymer UNKNOWN LIGAND 4 syn non-polymer 92.094 GLYCEROL 4 syn non-polymer 18.015 water 215 nat water no yes G(MSE)SKIFNEELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVL(MSE)GPGRPAAVGKDELAEVYLSVFETVGFD (MSE)AYEIKEVVQTSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKISP GMSKIFNEELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQ TSADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKISP A,B,C,D 378184 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample YP_049581.1, ECA1476 29471 Pectobacterium atrosepticum Escherichia coli HK100 Plasmid SpeedET 1 4.65 73.57 VAPOR DIFFUSION, SITTING DROP 4.6 2.0000M NaCl, 0.1M Acetate pH 4., NANODROP, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative pdbx_struct_assembly_auth_evidence software software struct_conn database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Advisory Version format compliance Author supporting evidence Refinement description Data collection Derived calculations Refinement description Database references Derived calculations 1 0 2008-07-01 1 1 2011-07-13 1 2 2017-10-25 1 3 2019-07-24 1 4 2023-02-01 _software.classification _software.name _software.classification _software.contact_author _software.contact_author_email _software.language _software.location _software.name _software.type _software.version _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2008-05-27 REL REL NA SODIUM ION UNL UNKNOWN LIGAND GOL GLYCEROL HOH water SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. NA 5 2 NA NA 135 A UNL 1 3 UNL UNL 136 A GOL 9 4 GOL GOL 137 A UNL 2 3 UNL UNL 135 B GOL 7 4 GOL GOL 136 B GOL 8 4 GOL GOL 137 B UNL 3 3 UNL UNL 135 C UNL 4 3 UNL UNL 135 D GOL 6 4 GOL GOL 136 D HOH 11 5 HOH HOH 138 A HOH 13 5 HOH HOH 139 A HOH 14 5 HOH HOH 140 A HOH 22 5 HOH HOH 141 A HOH 28 5 HOH HOH 142 A HOH 30 5 HOH HOH 143 A HOH 33 5 HOH HOH 144 A HOH 46 5 HOH HOH 145 A HOH 48 5 HOH HOH 146 A HOH 50 5 HOH HOH 147 A HOH 54 5 HOH HOH 148 A HOH 55 5 HOH HOH 149 A HOH 56 5 HOH HOH 150 A HOH 58 5 HOH HOH 151 A HOH 61 5 HOH HOH 152 A HOH 64 5 HOH HOH 153 A HOH 66 5 HOH HOH 154 A HOH 70 5 HOH HOH 155 A HOH 79 5 HOH HOH 156 A HOH 85 5 HOH HOH 157 A HOH 88 5 HOH HOH 158 A HOH 92 5 HOH HOH 159 A HOH 93 5 HOH HOH 160 A HOH 96 5 HOH HOH 161 A HOH 99 5 HOH HOH 162 A HOH 100 5 HOH HOH 163 A HOH 102 5 HOH HOH 164 A HOH 103 5 HOH HOH 165 A HOH 106 5 HOH HOH 166 A HOH 111 5 HOH HOH 167 A HOH 120 5 HOH HOH 168 A HOH 125 5 HOH HOH 169 A HOH 131 5 HOH HOH 170 A HOH 142 5 HOH HOH 171 A HOH 143 5 HOH HOH 172 A HOH 144 5 HOH HOH 173 A HOH 148 5 HOH HOH 174 A HOH 150 5 HOH HOH 175 A HOH 151 5 HOH HOH 176 A HOH 152 5 HOH HOH 177 A HOH 153 5 HOH HOH 178 A HOH 154 5 HOH HOH 179 A HOH 155 5 HOH HOH 180 A HOH 156 5 HOH HOH 181 A HOH 157 5 HOH HOH 182 A HOH 158 5 HOH HOH 183 A HOH 159 5 HOH HOH 184 A HOH 160 5 HOH HOH 185 A HOH 187 5 HOH HOH 186 A HOH 194 5 HOH HOH 187 A HOH 195 5 HOH HOH 188 A HOH 196 5 HOH HOH 189 A HOH 197 5 HOH HOH 190 A HOH 198 5 HOH HOH 191 A HOH 199 5 HOH HOH 192 A HOH 200 5 HOH HOH 193 A HOH 201 5 HOH HOH 194 A HOH 202 5 HOH HOH 195 A HOH 203 5 HOH HOH 196 A HOH 204 5 HOH HOH 197 A HOH 207 5 HOH HOH 198 A HOH 18 5 HOH HOH 138 B HOH 23 5 HOH HOH 139 B HOH 25 5 HOH HOH 140 B HOH 26 5 HOH HOH 141 B HOH 31 5 HOH HOH 142 B HOH 34 5 HOH HOH 143 B HOH 36 5 HOH HOH 144 B HOH 38 5 HOH HOH 145 B HOH 40 5 HOH HOH 146 B HOH 43 5 HOH HOH 147 B HOH 51 5 HOH HOH 148 B HOH 62 5 HOH HOH 149 B HOH 74 5 HOH HOH 150 B HOH 76 5 HOH HOH 151 B HOH 77 5 HOH HOH 152 B HOH 81 5 HOH HOH 153 B HOH 90 5 HOH HOH 154 B HOH 94 5 HOH HOH 155 B HOH 95 5 HOH HOH 156 B HOH 97 5 HOH HOH 157 B HOH 98 5 HOH HOH 158 B HOH 109 5 HOH HOH 159 B HOH 114 5 HOH HOH 160 B HOH 115 5 HOH HOH 161 B HOH 118 5 HOH HOH 162 B HOH 119 5 HOH HOH 163 B HOH 122 5 HOH HOH 164 B HOH 123 5 HOH HOH 165 B HOH 133 5 HOH HOH 166 B HOH 137 5 HOH HOH 167 B HOH 139 5 HOH HOH 168 B HOH 145 5 HOH HOH 169 B HOH 146 5 HOH HOH 170 B HOH 161 5 HOH HOH 171 B HOH 162 5 HOH HOH 172 B HOH 163 5 HOH HOH 173 B HOH 164 5 HOH HOH 174 B HOH 165 5 HOH HOH 175 B HOH 166 5 HOH HOH 176 B HOH 167 5 HOH HOH 177 B HOH 168 5 HOH HOH 178 B HOH 169 5 HOH HOH 179 B HOH 170 5 HOH HOH 180 B HOH 171 5 HOH HOH 181 B HOH 172 5 HOH HOH 182 B HOH 173 5 HOH HOH 183 B HOH 186 5 HOH HOH 184 B HOH 188 5 HOH HOH 185 B HOH 189 5 HOH HOH 186 B HOH 190 5 HOH HOH 187 B HOH 191 5 HOH HOH 188 B HOH 193 5 HOH HOH 189 B HOH 205 5 HOH HOH 190 B HOH 206 5 HOH HOH 191 B HOH 208 5 HOH HOH 192 B HOH 209 5 HOH HOH 193 B HOH 210 5 HOH HOH 194 B HOH 211 5 HOH HOH 195 B HOH 212 5 HOH HOH 196 B HOH 214 5 HOH HOH 197 B HOH 215 5 HOH HOH 198 B HOH 216 5 HOH HOH 199 B HOH 10 5 HOH HOH 136 C HOH 12 5 HOH HOH 137 C HOH 16 5 HOH HOH 138 C HOH 17 5 HOH HOH 139 C HOH 20 5 HOH HOH 140 C HOH 21 5 HOH HOH 141 C HOH 29 5 HOH HOH 142 C HOH 37 5 HOH HOH 143 C HOH 39 5 HOH HOH 144 C HOH 41 5 HOH HOH 145 C HOH 42 5 HOH HOH 146 C HOH 49 5 HOH HOH 147 C HOH 53 5 HOH HOH 148 C HOH 57 5 HOH HOH 149 C HOH 59 5 HOH HOH 150 C HOH 67 5 HOH HOH 151 C HOH 69 5 HOH HOH 152 C HOH 71 5 HOH HOH 153 C HOH 75 5 HOH HOH 154 C HOH 83 5 HOH HOH 155 C HOH 84 5 HOH HOH 156 C HOH 87 5 HOH HOH 157 C HOH 91 5 HOH HOH 158 C HOH 104 5 HOH HOH 159 C HOH 112 5 HOH HOH 160 C HOH 117 5 HOH HOH 161 C HOH 121 5 HOH HOH 162 C HOH 124 5 HOH HOH 163 C HOH 128 5 HOH HOH 164 C HOH 129 5 HOH HOH 165 C HOH 132 5 HOH HOH 166 C HOH 136 5 HOH HOH 167 C HOH 138 5 HOH HOH 168 C HOH 140 5 HOH HOH 169 C HOH 141 5 HOH HOH 170 C HOH 147 5 HOH HOH 171 C HOH 149 5 HOH HOH 172 C HOH 174 5 HOH HOH 173 C HOH 175 5 HOH HOH 174 C HOH 176 5 HOH HOH 175 C HOH 177 5 HOH HOH 176 C HOH 178 5 HOH HOH 177 C HOH 179 5 HOH HOH 178 C HOH 180 5 HOH HOH 179 C HOH 181 5 HOH HOH 180 C HOH 182 5 HOH HOH 181 C HOH 183 5 HOH HOH 182 C HOH 192 5 HOH HOH 183 C HOH 213 5 HOH HOH 184 C HOH 217 5 HOH HOH 185 C HOH 218 5 HOH HOH 186 C HOH 219 5 HOH HOH 187 C HOH 220 5 HOH HOH 188 C HOH 225 5 HOH HOH 189 C HOH 15 5 HOH HOH 137 D HOH 19 5 HOH HOH 138 D HOH 24 5 HOH HOH 139 D HOH 27 5 HOH HOH 140 D HOH 32 5 HOH HOH 141 D HOH 35 5 HOH HOH 142 D HOH 44 5 HOH HOH 143 D HOH 45 5 HOH HOH 144 D HOH 47 5 HOH HOH 145 D HOH 52 5 HOH HOH 146 D HOH 60 5 HOH HOH 147 D HOH 63 5 HOH HOH 148 D HOH 65 5 HOH HOH 149 D HOH 68 5 HOH HOH 150 D HOH 72 5 HOH HOH 151 D HOH 73 5 HOH HOH 152 D HOH 78 5 HOH HOH 153 D HOH 80 5 HOH HOH 154 D HOH 82 5 HOH HOH 155 D HOH 86 5 HOH HOH 156 D HOH 89 5 HOH HOH 157 D HOH 101 5 HOH HOH 158 D HOH 105 5 HOH HOH 159 D HOH 107 5 HOH HOH 160 D HOH 108 5 HOH HOH 161 D HOH 110 5 HOH HOH 162 D HOH 113 5 HOH HOH 163 D HOH 116 5 HOH HOH 164 D HOH 126 5 HOH HOH 165 D HOH 127 5 HOH HOH 166 D HOH 130 5 HOH HOH 167 D HOH 134 5 HOH HOH 168 D HOH 135 5 HOH HOH 169 D HOH 184 5 HOH HOH 170 D HOH 185 5 HOH HOH 171 D HOH 222 5 HOH HOH 172 D HOH 223 5 HOH HOH 173 D HOH 224 5 HOH HOH 174 D n 1 0 A n 2 1 A n 3 2 A LYS 3 n 4 LYS 3 A ILE 4 n 5 ILE 4 A PHE 5 n 6 PHE 5 A ASN 6 n 7 ASN 6 A GLU 7 n 8 GLU 7 A GLU 8 n 9 GLU 8 A LEU 9 n 10 LEU 9 A ALA 10 n 11 ALA 10 A VAL 11 n 12 VAL 11 A ILE 12 n 13 ILE 12 A GLU 13 n 14 GLU 13 A ALA 14 n 15 ALA 14 A ALA 15 n 16 ALA 15 A ALA 16 n 17 ALA 16 A ILE 17 n 18 ILE 17 A ALA 18 n 19 ALA 18 A TYR 19 n 20 TYR 19 A LEU 20 n 21 LEU 20 A THR 21 n 22 THR 21 A ALA 22 n 23 ALA 22 A PHE 23 n 24 PHE 23 A ASN 24 n 25 ASN 24 A ARG 25 n 26 ARG 25 A ALA 26 n 27 ALA 26 A ASP 27 n 28 ASP 27 A ILE 28 n 29 ILE 28 A PRO 29 n 30 PRO 29 A ALA 30 n 31 ALA 30 A VAL 31 n 32 VAL 31 A ILE 32 n 33 ILE 32 A ALA 33 n 34 ALA 33 A THR 34 n 35 THR 34 A TYR 35 n 36 TYR 35 A THR 36 n 37 THR 36 A ASP 37 n 38 ASP 37 A ASP 38 n 39 ASP 38 A GLY 39 n 40 GLY 39 A VAL 40 n 41 VAL 40 A LEU 41 n 42 LEU 41 A MSE 42 n 43 MSE 42 A GLY 43 n 44 GLY 43 A PRO 44 n 45 PRO 44 A GLY 45 n 46 GLY 45 A ARG 46 n 47 ARG 46 A PRO 47 n 48 PRO 47 A ALA 48 n 49 ALA 48 A ALA 49 n 50 ALA 49 A VAL 50 n 51 VAL 50 A GLY 51 n 52 GLY 51 A LYS 52 n 53 LYS 52 A ASP 53 n 54 ASP 53 A GLU 54 n 55 GLU 54 A LEU 55 n 56 LEU 55 A ALA 56 n 57 ALA 56 A GLU 57 n 58 GLU 57 A VAL 58 n 59 VAL 58 A TYR 59 n 60 TYR 59 A LEU 60 n 61 LEU 60 A SER 61 n 62 SER 61 A VAL 62 n 63 VAL 62 A PHE 63 n 64 PHE 63 A GLU 64 n 65 GLU 64 A THR 65 n 66 THR 65 A VAL 66 n 67 VAL 66 A GLY 67 n 68 GLY 67 A PHE 68 n 69 PHE 68 A ASP 69 n 70 ASP 69 A MSE 70 n 71 MSE 70 A ALA 71 n 72 ALA 71 A TYR 72 n 73 TYR 72 A GLU 73 n 74 GLU 73 A ILE 74 n 75 ILE 74 A LYS 75 n 76 LYS 75 A GLU 76 n 77 GLU 76 A VAL 77 n 78 VAL 77 A VAL 78 n 79 VAL 78 A GLN 79 n 80 GLN 79 A THR 80 n 81 THR 80 A SER 81 n 82 SER 81 A ALA 82 n 83 ALA 82 A ASP 83 n 84 ASP 83 A TRP 84 n 85 TRP 84 A ALA 85 n 86 ALA 85 A PHE 86 n 87 PHE 86 A VAL 87 n 88 VAL 87 A ARG 88 n 89 ARG 88 A SER 89 n 90 SER 89 A ALA 90 n 91 ALA 90 A THR 91 n 92 THR 91 A GLU 92 n 93 GLU 92 A GLY 93 n 94 GLY 93 A THR 94 n 95 THR 94 A GLU 95 n 96 GLU 95 A THR 96 n 97 THR 96 A ASN 97 n 98 ASN 97 A LYS 98 n 99 LYS 98 A ALA 99 n 100 ALA 99 A THR 100 n 101 THR 100 A GLY 101 n 102 GLY 101 A VAL 102 n 103 VAL 102 A VAL 103 n 104 VAL 103 A THR 104 n 105 THR 104 A PRO 105 n 106 PRO 105 A ALA 106 n 107 ALA 106 A ALA 107 n 108 ALA 107 A TYR 108 n 109 TYR 108 A GLN 109 n 110 GLN 109 A GLU 110 n 111 GLU 110 A LEU 111 n 112 LEU 111 A PHE 112 n 113 PHE 112 A LEU 113 n 114 LEU 113 A LEU 114 n 115 LEU 114 A ARG 115 n 116 ARG 115 A LYS 116 n 117 LYS 116 A SER 117 n 118 SER 117 A ALA 118 n 119 ALA 118 A THR 119 n 120 THR 119 A GLY 120 n 121 GLY 120 A SER 121 n 122 SER 121 A TRP 122 n 123 TRP 122 A GLN 123 n 124 GLN 123 A THR 124 n 125 THR 124 A ALA 125 n 126 ALA 125 A ARG 126 n 127 ARG 126 A TYR 127 n 128 TYR 127 A CYS 128 n 129 CYS 128 A THR 129 n 130 THR 129 A SER 130 n 131 SER 130 A LYS 131 n 132 LYS 131 A ILE 132 n 133 ILE 132 A SER 133 n 134 SER 133 A PRO 134 n 135 PRO 134 A n 1 0 B MSE 1 n 2 MSE 1 B SER 2 n 3 SER 2 B LYS 3 n 4 LYS 3 B ILE 4 n 5 ILE 4 B PHE 5 n 6 PHE 5 B ASN 6 n 7 ASN 6 B GLU 7 n 8 GLU 7 B GLU 8 n 9 GLU 8 B LEU 9 n 10 LEU 9 B ALA 10 n 11 ALA 10 B VAL 11 n 12 VAL 11 B ILE 12 n 13 ILE 12 B GLU 13 n 14 GLU 13 B ALA 14 n 15 ALA 14 B ALA 15 n 16 ALA 15 B ALA 16 n 17 ALA 16 B ILE 17 n 18 ILE 17 B ALA 18 n 19 ALA 18 B TYR 19 n 20 TYR 19 B LEU 20 n 21 LEU 20 B THR 21 n 22 THR 21 B ALA 22 n 23 ALA 22 B PHE 23 n 24 PHE 23 B ASN 24 n 25 ASN 24 B ARG 25 n 26 ARG 25 B ALA 26 n 27 ALA 26 B ASP 27 n 28 ASP 27 B ILE 28 n 29 ILE 28 B PRO 29 n 30 PRO 29 B ALA 30 n 31 ALA 30 B VAL 31 n 32 VAL 31 B ILE 32 n 33 ILE 32 B ALA 33 n 34 ALA 33 B THR 34 n 35 THR 34 B TYR 35 n 36 TYR 35 B THR 36 n 37 THR 36 B ASP 37 n 38 ASP 37 B ASP 38 n 39 ASP 38 B GLY 39 n 40 GLY 39 B VAL 40 n 41 VAL 40 B LEU 41 n 42 LEU 41 B MSE 42 n 43 MSE 42 B GLY 43 n 44 GLY 43 B PRO 44 n 45 PRO 44 B GLY 45 n 46 GLY 45 B ARG 46 n 47 ARG 46 B PRO 47 n 48 PRO 47 B ALA 48 n 49 ALA 48 B ALA 49 n 50 ALA 49 B VAL 50 n 51 VAL 50 B GLY 51 n 52 GLY 51 B LYS 52 n 53 LYS 52 B ASP 53 n 54 ASP 53 B GLU 54 n 55 GLU 54 B LEU 55 n 56 LEU 55 B ALA 56 n 57 ALA 56 B GLU 57 n 58 GLU 57 B VAL 58 n 59 VAL 58 B TYR 59 n 60 TYR 59 B LEU 60 n 61 LEU 60 B SER 61 n 62 SER 61 B VAL 62 n 63 VAL 62 B PHE 63 n 64 PHE 63 B GLU 64 n 65 GLU 64 B THR 65 n 66 THR 65 B VAL 66 n 67 VAL 66 B GLY 67 n 68 GLY 67 B PHE 68 n 69 PHE 68 B ASP 69 n 70 ASP 69 B MSE 70 n 71 MSE 70 B ALA 71 n 72 ALA 71 B TYR 72 n 73 TYR 72 B GLU 73 n 74 GLU 73 B ILE 74 n 75 ILE 74 B LYS 75 n 76 LYS 75 B GLU 76 n 77 GLU 76 B VAL 77 n 78 VAL 77 B VAL 78 n 79 VAL 78 B GLN 79 n 80 GLN 79 B THR 80 n 81 THR 80 B SER 81 n 82 SER 81 B ALA 82 n 83 ALA 82 B ASP 83 n 84 ASP 83 B TRP 84 n 85 TRP 84 B ALA 85 n 86 ALA 85 B PHE 86 n 87 PHE 86 B VAL 87 n 88 VAL 87 B ARG 88 n 89 ARG 88 B SER 89 n 90 SER 89 B ALA 90 n 91 ALA 90 B THR 91 n 92 THR 91 B GLU 92 n 93 GLU 92 B GLY 93 n 94 GLY 93 B THR 94 n 95 THR 94 B GLU 95 n 96 GLU 95 B THR 96 n 97 THR 96 B ASN 97 n 98 ASN 97 B LYS 98 n 99 LYS 98 B ALA 99 n 100 ALA 99 B THR 100 n 101 THR 100 B GLY 101 n 102 GLY 101 B VAL 102 n 103 VAL 102 B VAL 103 n 104 VAL 103 B THR 104 n 105 THR 104 B PRO 105 n 106 PRO 105 B ALA 106 n 107 ALA 106 B ALA 107 n 108 ALA 107 B TYR 108 n 109 TYR 108 B GLN 109 n 110 GLN 109 B GLU 110 n 111 GLU 110 B LEU 111 n 112 LEU 111 B PHE 112 n 113 PHE 112 B LEU 113 n 114 LEU 113 B LEU 114 n 115 LEU 114 B ARG 115 n 116 ARG 115 B LYS 116 n 117 LYS 116 B SER 117 n 118 SER 117 B ALA 118 n 119 ALA 118 B THR 119 n 120 THR 119 B GLY 120 n 121 GLY 120 B SER 121 n 122 SER 121 B TRP 122 n 123 TRP 122 B GLN 123 n 124 GLN 123 B THR 124 n 125 THR 124 B ALA 125 n 126 ALA 125 B ARG 126 n 127 ARG 126 B TYR 127 n 128 TYR 127 B CYS 128 n 129 CYS 128 B THR 129 n 130 THR 129 B SER 130 n 131 SER 130 B LYS 131 n 132 LYS 131 B ILE 132 n 133 ILE 132 B SER 133 n 134 SER 133 B PRO 134 n 135 PRO 134 B n 1 0 C MSE 1 n 2 MSE 1 C SER 2 n 3 SER 2 C LYS 3 n 4 LYS 3 C ILE 4 n 5 ILE 4 C PHE 5 n 6 PHE 5 C ASN 6 n 7 ASN 6 C GLU 7 n 8 GLU 7 C GLU 8 n 9 GLU 8 C LEU 9 n 10 LEU 9 C ALA 10 n 11 ALA 10 C VAL 11 n 12 VAL 11 C ILE 12 n 13 ILE 12 C GLU 13 n 14 GLU 13 C ALA 14 n 15 ALA 14 C ALA 15 n 16 ALA 15 C ALA 16 n 17 ALA 16 C ILE 17 n 18 ILE 17 C ALA 18 n 19 ALA 18 C TYR 19 n 20 TYR 19 C LEU 20 n 21 LEU 20 C THR 21 n 22 THR 21 C ALA 22 n 23 ALA 22 C PHE 23 n 24 PHE 23 C ASN 24 n 25 ASN 24 C ARG 25 n 26 ARG 25 C ALA 26 n 27 ALA 26 C ASP 27 n 28 ASP 27 C ILE 28 n 29 ILE 28 C PRO 29 n 30 PRO 29 C ALA 30 n 31 ALA 30 C VAL 31 n 32 VAL 31 C ILE 32 n 33 ILE 32 C ALA 33 n 34 ALA 33 C THR 34 n 35 THR 34 C TYR 35 n 36 TYR 35 C THR 36 n 37 THR 36 C ASP 37 n 38 ASP 37 C ASP 38 n 39 ASP 38 C GLY 39 n 40 GLY 39 C VAL 40 n 41 VAL 40 C LEU 41 n 42 LEU 41 C MSE 42 n 43 MSE 42 C GLY 43 n 44 GLY 43 C PRO 44 n 45 PRO 44 C GLY 45 n 46 GLY 45 C ARG 46 n 47 ARG 46 C PRO 47 n 48 PRO 47 C ALA 48 n 49 ALA 48 C ALA 49 n 50 ALA 49 C VAL 50 n 51 VAL 50 C GLY 51 n 52 GLY 51 C LYS 52 n 53 LYS 52 C ASP 53 n 54 ASP 53 C GLU 54 n 55 GLU 54 C LEU 55 n 56 LEU 55 C ALA 56 n 57 ALA 56 C GLU 57 n 58 GLU 57 C VAL 58 n 59 VAL 58 C TYR 59 n 60 TYR 59 C LEU 60 n 61 LEU 60 C SER 61 n 62 SER 61 C VAL 62 n 63 VAL 62 C PHE 63 n 64 PHE 63 C GLU 64 n 65 GLU 64 C THR 65 n 66 THR 65 C VAL 66 n 67 VAL 66 C GLY 67 n 68 GLY 67 C PHE 68 n 69 PHE 68 C ASP 69 n 70 ASP 69 C MSE 70 n 71 MSE 70 C ALA 71 n 72 ALA 71 C TYR 72 n 73 TYR 72 C GLU 73 n 74 GLU 73 C ILE 74 n 75 ILE 74 C LYS 75 n 76 LYS 75 C GLU 76 n 77 GLU 76 C VAL 77 n 78 VAL 77 C VAL 78 n 79 VAL 78 C GLN 79 n 80 GLN 79 C THR 80 n 81 THR 80 C SER 81 n 82 SER 81 C ALA 82 n 83 ALA 82 C ASP 83 n 84 ASP 83 C TRP 84 n 85 TRP 84 C ALA 85 n 86 ALA 85 C PHE 86 n 87 PHE 86 C VAL 87 n 88 VAL 87 C ARG 88 n 89 ARG 88 C SER 89 n 90 SER 89 C ALA 90 n 91 ALA 90 C THR 91 n 92 THR 91 C GLU 92 n 93 GLU 92 C GLY 93 n 94 GLY 93 C THR 94 n 95 THR 94 C GLU 95 n 96 GLU 95 C THR 96 n 97 THR 96 C ASN 97 n 98 ASN 97 C LYS 98 n 99 LYS 98 C ALA 99 n 100 ALA 99 C THR 100 n 101 THR 100 C GLY 101 n 102 GLY 101 C VAL 102 n 103 VAL 102 C VAL 103 n 104 VAL 103 C THR 104 n 105 THR 104 C PRO 105 n 106 PRO 105 C ALA 106 n 107 ALA 106 C ALA 107 n 108 ALA 107 C TYR 108 n 109 TYR 108 C GLN 109 n 110 GLN 109 C GLU 110 n 111 GLU 110 C LEU 111 n 112 LEU 111 C PHE 112 n 113 PHE 112 C LEU 113 n 114 LEU 113 C LEU 114 n 115 LEU 114 C ARG 115 n 116 ARG 115 C LYS 116 n 117 LYS 116 C SER 117 n 118 SER 117 C ALA 118 n 119 ALA 118 C THR 119 n 120 THR 119 C GLY 120 n 121 GLY 120 C SER 121 n 122 SER 121 C TRP 122 n 123 TRP 122 C GLN 123 n 124 GLN 123 C THR 124 n 125 THR 124 C ALA 125 n 126 ALA 125 C ARG 126 n 127 ARG 126 C TYR 127 n 128 TYR 127 C CYS 128 n 129 CYS 128 C THR 129 n 130 THR 129 C SER 130 n 131 SER 130 C LYS 131 n 132 LYS 131 C ILE 132 n 133 ILE 132 C SER 133 n 134 SER 133 C PRO 134 n 135 PRO 134 C n 1 0 D n 2 1 D n 3 2 D n 4 3 D n 5 4 D PHE 5 n 6 PHE 5 D ASN 6 n 7 ASN 6 D GLU 7 n 8 GLU 7 D GLU 8 n 9 GLU 8 D LEU 9 n 10 LEU 9 D ALA 10 n 11 ALA 10 D VAL 11 n 12 VAL 11 D ILE 12 n 13 ILE 12 D GLU 13 n 14 GLU 13 D ALA 14 n 15 ALA 14 D ALA 15 n 16 ALA 15 D ALA 16 n 17 ALA 16 D ILE 17 n 18 ILE 17 D ALA 18 n 19 ALA 18 D TYR 19 n 20 TYR 19 D LEU 20 n 21 LEU 20 D THR 21 n 22 THR 21 D ALA 22 n 23 ALA 22 D PHE 23 n 24 PHE 23 D ASN 24 n 25 ASN 24 D ARG 25 n 26 ARG 25 D ALA 26 n 27 ALA 26 D ASP 27 n 28 ASP 27 D ILE 28 n 29 ILE 28 D PRO 29 n 30 PRO 29 D ALA 30 n 31 ALA 30 D VAL 31 n 32 VAL 31 D ILE 32 n 33 ILE 32 D ALA 33 n 34 ALA 33 D THR 34 n 35 THR 34 D TYR 35 n 36 TYR 35 D THR 36 n 37 THR 36 D ASP 37 n 38 ASP 37 D ASP 38 n 39 ASP 38 D GLY 39 n 40 GLY 39 D VAL 40 n 41 VAL 40 D LEU 41 n 42 LEU 41 D MSE 42 n 43 MSE 42 D GLY 43 n 44 GLY 43 D PRO 44 n 45 PRO 44 D GLY 45 n 46 GLY 45 D ARG 46 n 47 ARG 46 D PRO 47 n 48 PRO 47 D ALA 48 n 49 ALA 48 D ALA 49 n 50 ALA 49 D VAL 50 n 51 VAL 50 D GLY 51 n 52 GLY 51 D LYS 52 n 53 LYS 52 D ASP 53 n 54 ASP 53 D GLU 54 n 55 GLU 54 D LEU 55 n 56 LEU 55 D ALA 56 n 57 ALA 56 D GLU 57 n 58 GLU 57 D VAL 58 n 59 VAL 58 D TYR 59 n 60 TYR 59 D LEU 60 n 61 LEU 60 D SER 61 n 62 SER 61 D VAL 62 n 63 VAL 62 D PHE 63 n 64 PHE 63 D GLU 64 n 65 GLU 64 D THR 65 n 66 THR 65 D VAL 66 n 67 VAL 66 D GLY 67 n 68 GLY 67 D PHE 68 n 69 PHE 68 D ASP 69 n 70 ASP 69 D MSE 70 n 71 MSE 70 D ALA 71 n 72 ALA 71 D TYR 72 n 73 TYR 72 D GLU 73 n 74 GLU 73 D ILE 74 n 75 ILE 74 D LYS 75 n 76 LYS 75 D GLU 76 n 77 GLU 76 D VAL 77 n 78 VAL 77 D VAL 78 n 79 VAL 78 D GLN 79 n 80 GLN 79 D THR 80 n 81 THR 80 D SER 81 n 82 SER 81 D ALA 82 n 83 ALA 82 D ASP 83 n 84 ASP 83 D TRP 84 n 85 TRP 84 D ALA 85 n 86 ALA 85 D PHE 86 n 87 PHE 86 D VAL 87 n 88 VAL 87 D ARG 88 n 89 ARG 88 D SER 89 n 90 SER 89 D ALA 90 n 91 ALA 90 D THR 91 n 92 THR 91 D GLU 92 n 93 GLU 92 D GLY 93 n 94 GLY 93 D THR 94 n 95 THR 94 D GLU 95 n 96 GLU 95 D THR 96 n 97 THR 96 D ASN 97 n 98 ASN 97 D LYS 98 n 99 LYS 98 D ALA 99 n 100 ALA 99 D THR 100 n 101 THR 100 D GLY 101 n 102 GLY 101 D VAL 102 n 103 VAL 102 D VAL 103 n 104 VAL 103 D THR 104 n 105 THR 104 D PRO 105 n 106 PRO 105 D ALA 106 n 107 ALA 106 D ALA 107 n 108 ALA 107 D TYR 108 n 109 TYR 108 D GLN 109 n 110 GLN 109 D GLU 110 n 111 GLU 110 D LEU 111 n 112 LEU 111 D PHE 112 n 113 PHE 112 D LEU 113 n 114 LEU 113 D LEU 114 n 115 LEU 114 D ARG 115 n 116 ARG 115 D LYS 116 n 117 LYS 116 D SER 117 n 118 SER 117 D ALA 118 n 119 ALA 118 D THR 119 n 120 THR 119 D GLY 120 n 121 GLY 120 D SER 121 n 122 SER 121 D TRP 122 n 123 TRP 122 D GLN 123 n 124 GLN 123 D THR 124 n 125 THR 124 D ALA 125 n 126 ALA 125 D ARG 126 n 127 ARG 126 D TYR 127 n 128 TYR 127 D CYS 128 n 129 CYS 128 D THR 129 n 130 THR 129 D SER 130 n 131 SER 130 D LYS 131 n 132 LYS 131 D ILE 132 n 133 ILE 132 D SER 133 n 134 SER 133 D PRO 134 n 135 PRO 134 D 4.2026 0.5046 1.2448 1.8443 0.3427 4.0078 0.1757 0.2192 -0.1044 -0.0897 -0.0668 0.2072 0.0318 -0.0804 -0.1088 -0.0986 -0.0430 -0.0013 -0.1551 -0.0755 -0.2044 refined 15.8714 39.4144 -23.5833 X-RAY DIFFRACTION 2.8925 1.1044 0.7444 4.1976 0.4154 2.8971 -0.1854 0.1196 0.3595 -0.0874 0.2236 0.3303 -0.1730 0.1190 -0.0382 -0.1361 -0.0595 -0.0606 -0.1656 0.0318 -0.1665 refined 26.5783 52.1112 -10.8400 X-RAY DIFFRACTION 3.2140 -0.4176 0.7701 3.6815 -0.0522 3.3655 -0.1600 -0.0899 0.4192 0.0366 0.1874 -0.2283 -0.1086 -0.0884 -0.0274 -0.1637 0.0583 -0.0374 -0.2021 -0.0128 -0.1645 refined 34.8095 52.2965 10.9275 X-RAY DIFFRACTION 5.0706 -0.1236 -0.0724 2.5724 -0.7613 3.5358 0.0985 -0.4531 -0.0062 0.0039 -0.1541 -0.3303 0.1254 0.2618 0.0556 -0.1360 0.0812 0.0110 -0.0798 0.0916 -0.2033 refined 45.6974 40.2395 23.5278 X-RAY DIFFRACTION A 3 A 4 A 134 A 135 X-RAY DIFFRACTION 1 B 1 B 2 B 134 B 135 X-RAY DIFFRACTION 2 C 1 C 2 C 134 C 135 X-RAY DIFFRACTION 3 D 5 D 6 D 134 D 135 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric gel filtration gel filtration 3600 -31 12260 3320 -20 12200 A ASN 24 A O ASN 25 1_555 A NA 135 E NA NA 1_555 A ASN 24 A OD1 ASN 25 1_555 84.2 A ASN 24 A O ASN 25 1_555 A NA 135 E NA NA 1_555 A PHE 68 A O PHE 69 1_555 165.2 A ASN 24 A OD1 ASN 25 1_555 A NA 135 E NA NA 1_555 A PHE 68 A O PHE 69 1_555 101.2 A ASN 24 A O ASN 25 1_555 A NA 135 E NA NA 1_555 A HOH 159 N O HOH 1_555 80.4 A ASN 24 A OD1 ASN 25 1_555 A NA 135 E NA NA 1_555 A HOH 159 N O HOH 1_555 96.0 A PHE 68 A O PHE 69 1_555 A NA 135 E NA NA 1_555 A HOH 159 N O HOH 1_555 85.3 A ASN 24 A O ASN 25 1_555 A NA 135 E NA NA 1_555 A HOH 176 N O HOH 1_555 98.6 A ASN 24 A OD1 ASN 25 1_555 A NA 135 E NA NA 1_555 A HOH 176 N O HOH 1_555 92.4 A PHE 68 A O PHE 69 1_555 A NA 135 E NA NA 1_555 A HOH 176 N O HOH 1_555 95.0 A HOH 159 N O HOH 1_555 A NA 135 E NA NA 1_555 A HOH 176 N O HOH 1_555 171.4 A ASN 24 A O ASN 25 1_555 A NA 135 E NA NA 1_555 A HOH 190 N O HOH 1_555 84.6 A ASN 24 A OD1 ASN 25 1_555 A NA 135 E NA NA 1_555 A HOH 190 N O HOH 1_555 166.0 A PHE 68 A O PHE 69 1_555 A NA 135 E NA NA 1_555 A HOH 190 N O HOH 1_555 91.7 A HOH 159 N O HOH 1_555 A NA 135 E NA NA 1_555 A HOH 190 N O HOH 1_555 90.3 A HOH 176 N O HOH 1_555 A NA 135 E NA NA 1_555 A HOH 190 N O HOH 1_555 81.2 A MSE 42 SELENOMETHIONINE A MSE 43 MET A MSE 70 SELENOMETHIONINE A MSE 71 MET B MSE 1 SELENOMETHIONINE B MSE 2 MET B MSE 42 SELENOMETHIONINE B MSE 43 MET B MSE 70 SELENOMETHIONINE B MSE 71 MET C MSE 1 SELENOMETHIONINE C MSE 2 MET C MSE 42 SELENOMETHIONINE C MSE 43 MET C MSE 70 SELENOMETHIONINE C MSE 71 MET D MSE 42 SELENOMETHIONINE D MSE 43 MET D MSE 70 SELENOMETHIONINE D MSE 71 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 49 A O ALA 50 A N LEU 41 A N LEU 42 A N MSE 42 A N MSE 43 A O TYR 127 A O TYR 128 A O ALA 125 A O ALA 126 A N LEU 113 A N LEU 114 A O THR 104 A O THR 105 A N GLU 95 A N GLU 96 A O PHE 86 A O PHE 87 A N VAL 78 A N VAL 79 B N LYS 3 B N LYS 4 C O GLN 79 C O GLN 80 C N VAL 78 C N VAL 79 C O PHE 86 C O PHE 87 C N GLU 95 C N GLU 96 C O THR 104 C O THR 105 C N LEU 113 C N LEU 114 C O ARG 126 C O ARG 127 C O THR 124 C O THR 125 C N THR 36 C N THR 37 C N LEU 41 C N LEU 42 C O ALA 49 C O ALA 50 B O ALA 49 B O ALA 50 B N LEU 41 B N LEU 42 B N MSE 42 B N MSE 43 B O THR 129 B O THR 130 B O ALA 125 B O ALA 126 B N LEU 113 B N LEU 114 B O ALA 106 B O ALA 107 B N GLY 93 B N GLY 94 B O ARG 88 B O ARG 89 B N LYS 75 B N LYS 76 B N GLN 79 B N GLN 80 C O LYS 3 C O LYS 4 D O ALA 49 D O ALA 50 D N LEU 41 D N LEU 42 D N MSE 42 D N MSE 43 D O THR 129 D O THR 130 D O ALA 125 D O ALA 126 D N LEU 113 D N LEU 114 D O THR 104 D O THR 105 D N GLU 95 D N GLU 96 D O PHE 86 D O PHE 87 D N VAL 78 D N VAL 79 1 A CG LYS 3 A CG LYS 4 1 Y 1 A CD LYS 3 A CD LYS 4 1 Y 1 A CE LYS 3 A CE LYS 4 1 Y 1 A NZ LYS 3 A NZ LYS 4 1 Y 1 B CB PHE 5 B CB PHE 6 1 Y 1 B CG PHE 5 B CG PHE 6 1 Y 1 B CD1 PHE 5 B CD1 PHE 6 1 Y 1 B CD2 PHE 5 B CD2 PHE 6 1 Y 1 B CE1 PHE 5 B CE1 PHE 6 1 Y 1 B CE2 PHE 5 B CE2 PHE 6 1 Y 1 B CZ PHE 5 B CZ PHE 6 1 Y 1 B CG GLU 57 B CG GLU 58 1 Y 1 B CD GLU 57 B CD GLU 58 1 Y 1 B OE1 GLU 57 B OE1 GLU 58 1 Y 1 B OE2 GLU 57 B OE2 GLU 58 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A MSE 1 A MSE 2 1 Y 1 A SER 2 A SER 3 1 Y 1 B GLY 0 B GLY 1 1 Y 1 C GLY 0 C GLY 1 1 Y 1 D GLY 0 D GLY 1 1 Y 1 D MSE 1 D MSE 2 1 Y 1 D SER 2 D SER 3 1 Y 1 D LYS 3 D LYS 4 1 Y 1 D ILE 4 D ILE 5 1 Y 1 D D SER PRO 133 134 -136.09 1 -13.89 2.20 98.90 85.01 B B B CG SE CE MSE MSE MSE 1 1 1 N 1 B B SE CE MSE MSE 1 1 0.686 0.059 1.950 2.636 N 1 B ASN 6 -37.38 128.42 38.537 1.280 0.000 0.000 0.490 0.000 -1.770 0.968 0.950 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. AN UNKNOWN LIGAND (UNL) WAS MODELED AT THE PUTATIVE ACTIVE SITE ON EACH SUBUNIT IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT. 5. GLYCEROL MOLECULES USED AS A CRYOPROTECTANT WERE MODELED INTO THE STRUCTURE. UNEXPLAINED ELECTRON DENSITY AT THE N-TERMINAL REGION OF SUBUNIT B WAS NOT MODELED. 0.219 0.182 0.184 2.400 29.841 2140 42374 5.100 98.300 10.661 0.129 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.195 0.176 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.400 29.841 215 4283 52 0 4016 0.017 0.022 4186 0.002 0.020 2719 1.370 1.959 5719 0.903 3.000 6659 6.489 5.000 552 30.878 24.142 169 14.934 15.000 655 14.456 15.000 22 0.081 0.200 669 0.005 0.020 4720 0.001 0.020 858 0.196 0.200 764 0.193 0.200 2756 0.179 0.200 1981 0.084 0.200 2330 0.224 0.200 243 0.146 0.200 3 0.233 0.200 6 0.165 0.200 19 0.033 0.200 2 1.328 3.000 2676 0.408 3.000 1081 2.456 5.000 4316 4.256 8.000 1570 6.057 11.000 1390 1 A 1 1553 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.730 0.500 2 B 1 1553 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.360 0.500 3 C 1 1553 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.370 0.500 4 D 1 1553 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.540 0.500 1 A 1 1553 X-RAY DIFFRACTION MEDIUM THERMAL 0.670 2.000 2 B 1 1553 X-RAY DIFFRACTION MEDIUM THERMAL 0.670 2.000 3 C 1 1553 X-RAY DIFFRACTION MEDIUM THERMAL 0.680 2.000 4 D 1 1553 X-RAY DIFFRACTION MEDIUM THERMAL 0.730 2.000 0.344 0.280 2.462 156 2959 3115 20 99.680 54.294 2.40 29.841 3D9R 42374 0.078 0.078 1 6.900 3.700 98.700 0.658 2.40 2.46 1.2 11641 3119 0.658 1 3.70 99.80 0.569 2.46 2.53 1.3 11354 3052 0.569 1 3.70 99.60 0.463 2.53 2.60 1.7 11190 2989 0.463 1 3.70 99.70 0.359 2.60 2.68 2.1 10705 2879 0.359 1 3.70 99.60 0.271 2.68 2.77 2.8 10463 2795 0.271 1 3.70 99.30 0.224 2.77 2.87 3.4 10164 2715 0.224 1 3.70 99.50 0.185 2.87 2.98 4.1 9838 2620 0.185 1 3.80 99.10 0.132 2.98 3.10 5.7 9345 2500 0.132 1 3.70 99.40 0.101 3.10 3.24 7.1 9112 2430 0.101 1 3.70 99.00 0.084 3.24 3.39 8.1 8641 2293 0.084 1 3.80 99.10 0.073 3.39 3.58 8.6 8272 2195 0.073 1 3.80 98.80 0.065 3.58 3.79 8.6 7644 2039 0.065 1 3.70 98.40 0.062 3.79 4.06 9.2 7444 1971 0.062 1 3.80 98.30 0.053 4.06 4.38 10.4 6771 1789 0.053 1 3.80 97.70 0.043 4.38 4.80 12.2 6281 1660 0.043 1 3.80 97.40 0.037 4.80 5.37 13.8 5728 1510 0.037 1 3.80 97.20 0.046 5.37 6.20 12.1 4977 1324 0.046 1 3.80 97.00 0.051 6.20 7.59 10.2 4273 1139 0.051 1 3.80 97.10 0.038 7.59 10.73 14.7 3252 876 0.038 1 3.70 95.50 0.042 10.73 29.84 9.5 1687 479 0.042 1 3.50 90.40 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0019 refinement P.D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package phasing Tom Terwilliger terwilliger@LANL.gov http://www.solve.lanl.gov/ SOLVE package model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other data extraction PDB sw-help@rcsb.rutgers.edu September 10, 2007 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 3.004 data reduction MOSFLM Crystal structure of ketosteroid isomerase-like protein (YP_049581.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 2.40 A resolution 1 N N 1 N N 1 N N 1 N N 2 N N 3 N N 4 N N 3 N N 4 N N 4 N N 3 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N AUTHORS STATE THAT SIZE EXCLUSION CHROMATOGRAPHY INDICATES THAT THE DIMER IS A SIGNIFICANT OLIGOMERIZATION STATE. A GLU 7 A GLU 8 HELX_P A ARG 25 A ARG 26 1 1 19 A ASP 27 A ASP 28 HELX_P A THR 34 A THR 35 1 2 8 A GLY 51 A GLY 52 HELX_P A THR 65 A THR 66 1 3 15 B ASN 6 B ASN 7 HELX_P B ARG 25 B ARG 26 1 4 20 B ASP 27 B ASP 28 HELX_P B THR 34 B THR 35 1 5 8 B GLY 51 B GLY 52 HELX_P B THR 65 B THR 66 1 6 15 C ASN 6 C ASN 7 HELX_P C ARG 25 C ARG 26 1 7 20 C ASP 27 C ASP 28 HELX_P C THR 34 C THR 35 1 8 8 C GLY 51 C GLY 52 HELX_P C THR 65 C THR 66 1 9 15 D GLU 8 D GLU 9 HELX_P D ARG 25 D ARG 26 1 10 18 D ASP 27 D ASP 28 HELX_P D THR 34 D THR 35 1 11 8 D GLY 51 D GLY 52 HELX_P D THR 65 D THR 66 1 12 15 covale 1.329 both A LEU 41 A C LEU 42 1_555 A MSE 42 A N MSE 43 1_555 covale 1.330 both A MSE 42 A C MSE 43 1_555 A GLY 43 A N GLY 44 1_555 covale 1.328 both A ASP 69 A C ASP 70 1_555 A MSE 70 A N MSE 71 1_555 covale 1.332 both A MSE 70 A C MSE 71 1_555 A ALA 71 A N ALA 72 1_555 covale 1.336 both B MSE 1 B C MSE 2 1_555 B SER 2 B N SER 3 1_555 covale 1.323 both B LEU 41 B C LEU 42 1_555 B MSE 42 B N MSE 43 1_555 covale 1.325 both B MSE 42 B C MSE 43 1_555 B GLY 43 B N GLY 44 1_555 covale 1.333 both B ASP 69 B C ASP 70 1_555 B MSE 70 B N MSE 71 1_555 covale 1.333 both B MSE 70 B C MSE 71 1_555 B ALA 71 B N ALA 72 1_555 covale 1.338 both C MSE 1 C C MSE 2 1_555 C SER 2 C N SER 3 1_555 covale 1.322 both C LEU 41 C C LEU 42 1_555 C MSE 42 C N MSE 43 1_555 covale 1.325 both C MSE 42 C C MSE 43 1_555 C GLY 43 C N GLY 44 1_555 covale 1.332 both C ASP 69 C C ASP 70 1_555 C MSE 70 C N MSE 71 1_555 covale 1.339 both C MSE 70 C C MSE 71 1_555 C ALA 71 C N ALA 72 1_555 covale 1.328 both D LEU 41 D C LEU 42 1_555 D MSE 42 D N MSE 43 1_555 covale 1.330 both D MSE 42 D C MSE 43 1_555 D GLY 43 D N GLY 44 1_555 covale 1.333 both D ASP 69 D C ASP 70 1_555 D MSE 70 D N MSE 71 1_555 covale 1.336 both D MSE 70 D C MSE 71 1_555 D ALA 71 D N ALA 72 1_555 metalc 2.254 A ASN 24 A O ASN 25 1_555 A NA 135 E NA NA 1_555 metalc 2.792 A ASN 24 A OD1 ASN 25 1_555 A NA 135 E NA NA 1_555 metalc 2.258 A PHE 68 A O PHE 69 1_555 A NA 135 E NA NA 1_555 metalc 2.654 A NA 135 E NA NA 1_555 A HOH 159 N O HOH 1_555 metalc 2.617 A NA 135 E NA NA 1_555 A HOH 176 N O HOH 1_555 metalc 2.281 A NA 135 E NA NA 1_555 A HOH 190 N O HOH 1_555 ISOMERASE YP_049581.1, ketosteroid isomerase-like protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, ISOMERASE A SER 133 A SER 134 1 A PRO 134 A PRO 135 -7.80 B SER 133 B SER 134 1 B PRO 134 B PRO 135 5.08 C SER 133 C SER 134 1 C PRO 134 C PRO 135 0.15 A B C D A 1 A 1 A 134 A 134 4 B 1 B 1 B 134 B 134 4 C 1 C 1 C 134 C 134 4 D 1 D 1 D 134 D 134 4 Q6D750_ERWCT UNP 1 1 Q6D750 MSKIFNEELAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT SADWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKISP 1 134 3D9R 1 134 Q6D750 A 1 2 135 1 134 3D9R 1 134 Q6D750 B 1 2 135 1 134 3D9R 1 134 Q6D750 C 1 2 135 1 134 3D9R 1 134 Q6D750 D 1 2 135 1 expression tag GLY 0 3D9R A Q6D750 UNP 1 2 expression tag GLY 0 3D9R B Q6D750 UNP 1 3 expression tag GLY 0 3D9R C Q6D750 UNP 1 4 expression tag GLY 0 3D9R D Q6D750 UNP 1 6 7 7 6 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ALA 49 A ALA 50 A VAL 50 A VAL 51 A TYR 35 A TYR 36 A MSE 42 A MSE 43 A TRP 122 A TRP 123 A SER 133 A SER 134 A VAL 103 A VAL 104 A LYS 116 A LYS 117 A TRP 84 A TRP 85 A ASN 97 A ASN 98 A VAL 66 A VAL 67 A SER 81 A SER 82 B LYS 3 B LYS 4 B ILE 4 B ILE 5 C VAL 66 C VAL 67 C SER 81 C SER 82 C TRP 84 C TRP 85 C ASN 97 C ASN 98 C VAL 103 C VAL 104 C LYS 116 C LYS 117 C TRP 122 C TRP 123 C SER 133 C SER 134 C TYR 35 C TYR 36 C MSE 42 C MSE 43 C ALA 49 C ALA 50 C VAL 50 C VAL 51 B ALA 49 B ALA 50 B VAL 50 B VAL 51 B TYR 35 B TYR 36 B MSE 42 B MSE 43 B TRP 122 B TRP 123 B SER 133 B SER 134 B VAL 103 B VAL 104 B LYS 116 B LYS 117 B TRP 84 B TRP 85 B ASN 97 B ASN 98 B VAL 66 B VAL 67 B SER 81 B SER 82 C LYS 3 C LYS 4 C ILE 4 C ILE 5 D ALA 49 D ALA 50 D VAL 50 D VAL 51 D TYR 35 D TYR 36 D MSE 42 D MSE 43 D TRP 122 D TRP 123 D SER 133 D SER 134 D VAL 103 D VAL 104 D LYS 116 D LYS 117 D TRP 84 D TRP 85 D ASN 97 D ASN 98 D VAL 66 D VAL 67 D SER 81 D SER 82 BINDING SITE FOR RESIDUE NA A 135 A NA 135 Software 5 BINDING SITE FOR RESIDUE UNL A 136 A UNL 136 Software 6 BINDING SITE FOR RESIDUE UNL B 135 B UNL 135 Software 6 BINDING SITE FOR RESIDUE UNL C 135 C UNL 135 Software 6 BINDING SITE FOR RESIDUE UNL D 135 D UNL 135 Software 7 BINDING SITE FOR RESIDUE GOL D 136 D GOL 136 Software 6 BINDING SITE FOR RESIDUE GOL B 136 B GOL 136 Software 3 BINDING SITE FOR RESIDUE GOL B 137 B GOL 137 Software 4 BINDING SITE FOR RESIDUE GOL A 137 A GOL 137 Software 5 A ASN 24 A ASN 25 5 1_555 A PHE 68 A PHE 69 5 1_555 A HOH 159 N HOH 5 1_555 A HOH 176 N HOH 5 1_555 A HOH 190 N HOH 5 1_555 A TYR 19 A TYR 20 6 1_555 A PHE 23 A PHE 24 6 1_555 A THR 91 A THR 92 6 1_555 A GLU 110 A GLU 111 6 1_555 A TYR 127 A TYR 128 6 1_555 A THR 129 A THR 130 6 1_555 B TYR 19 B TYR 20 6 1_555 B THR 91 B THR 92 6 1_555 B GLU 110 B GLU 111 6 1_555 B TYR 127 B TYR 128 6 1_555 B THR 129 B THR 130 6 1_555 B HOH 189 O HOH 6 1_555 C TYR 19 C TYR 20 6 1_555 C PHE 23 C PHE 24 6 1_555 C THR 91 C THR 92 6 1_555 C GLU 110 C GLU 111 6 1_555 C TYR 127 C TYR 128 6 1_555 C THR 129 C THR 130 6 1_555 D TYR 19 D TYR 20 7 1_555 D PHE 23 D PHE 24 7 1_555 D THR 91 D THR 92 7 1_555 D GLU 110 D GLU 111 7 1_555 D TYR 127 D TYR 128 7 1_555 D THR 129 D THR 130 7 1_555 D HOH 165 Q HOH 7 1_555 B SER 2 B SER 3 6 1_555 B ILE 4 B ILE 5 6 1_555 D THR 36 D THR 37 6 1_555 D ASP 38 D ASP 39 6 1_555 D ARG 115 D ARG 116 6 1_555 D ARG 126 D ARG 127 6 1_555 B ARG 88 B ARG 89 3 1_555 B HOH 188 O HOH 3 1_555 B HOH 197 O HOH 3 1_555 B LYS 3 B LYS 4 4 1_555 B HOH 186 O HOH 4 1_555 C SER 81 C SER 82 4 1_555 C ALA 82 C ALA 83 4 1_555 A ASP 38 A ASP 39 5 1_555 A ARG 115 A ARG 116 5 1_555 A ALA 125 A ALA 126 5 1_555 A ARG 126 A ARG 127 5 1_555 C SER 2 C SER 3 5 1_555 20 C 2 2 21